BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>044308
MSCLALSLQPVNGSDILLQTREWFPPTRALAALSAFRQTREVFAATKRLNPNPQHQSPAN
ISADSESALESIASLGDDPLAASSGQLIVGVESRYRVVYRLVNSIYVLGITNADHDNSIN
VFECINIVNQAVSVIVTACRGVDVTPEKLNRKYAEIYMALDIVLRGVSSIRLAAMLGSMH
GDGIAKMVHSALDTEAKIRGADQWNSLEIHSIEHQAAVDSFSHATFEVPAETLAAGDEVA
ATLVVQTAAEQDKEQEKSEESPTEKDPFAASEAINKEPELVGGFKKNKDSSNDLTVALAG
IEVTTLPPAEATQSTHINVEGFEGEYGGIEFSNDQATMEETFEGFSDAWGGGLDASEFVG
PKKIAKKEGLSGLELLQTGPDAPAPSSKDGAGTPLDNLVKRTEMKGPEMYIVEQVNAEFR
ESLLARVGLMGAVYLRTMPKKTSGDDKDTEFSFRVEGTSAVKRFAVQSSKVSSLGDGMFH
VRTAPSDEPIPILRYSLLPRLTPLPLRVRLIKRHSGTLLSVMVQYVSNPDLPMPLNDVTF
SLKLPVDPTLLKVSPKAVLNRSDRELKWIVPEIPVKGAPGKLRVRMPVDSSEEDGGEEID
VVCHVKFASQGMLSLSGVCLRPATEGKTDFYEVGHKYESGVYICN

High Scoring Gene Products

Symbol, full name Information P value
AT5G57460 protein from Arabidopsis thaliana 3.6e-224

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  044308
        (645 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2174592 - symbol:AT5G57460 "AT5G57460" species...  2164  3.6e-224  1


>TAIR|locus:2174592 [details] [associations]
            symbol:AT5G57460 "AT5G57460" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
            GO:GO:0005886 EMBL:CP002688 GO:GO:0009507 EMBL:AB011482
            InterPro:IPR018808 Pfam:PF10291 EMBL:BT011690 EMBL:BT020333
            EMBL:AK228959 IPI:IPI00548526 RefSeq:NP_200555.1 UniGene:At.29333
            ProteinModelPortal:Q9FKM4 PRIDE:Q9FKM4 EnsemblPlants:AT5G57460.1
            GeneID:835851 KEGG:ath:AT5G57460 TAIR:At5g57460
            HOGENOM:HOG000242651 InParanoid:Q9FKM4 OMA:SPKAVLN PhylomeDB:Q9FKM4
            ProtClustDB:CLSN2687416 Genevestigator:Q9FKM4 Uniprot:Q9FKM4
        Length = 646

 Score = 2164 (766.8 bits), Expect = 3.6e-224, P = 3.6e-224
 Identities = 436/654 (66%), Positives = 513/654 (78%)

Query:     1 MSCLALSLQPVNGSDILLQTREWFPPTRALAALSAFRQTREVFAATKRLNPNP--QHQSP 58
             MSCLAL+LQP NGSDILLQTREWFPP RAL ALS FRQ R+  A++K+ +     Q Q+ 
Sbjct:     1 MSCLALALQPANGSDILLQTREWFPPARALIALSYFRQMRQALASSKQQHQQQSNQKQNQ 60

Query:    59 ANISADSESAL----ESIAS--LGDDPLAASSGQLIVGVESRYRVVYRLVNSIYVLGITN 112
             A+ S+ S S++    ++ A+  +GDDPLAAS+GQ+IVGVES+YRVVYRLVNSIY+LG+T 
Sbjct:    61 ASSSSSSSSSVADPDDATAAEFVGDDPLAASNGQVIVGVESKYRVVYRLVNSIYILGVTV 120

Query:   113 ADHDNSINVFECINIVNQAVSVIVTACRGVDVTPEKLNRKYAEIYMALDIVLRGVSSIRL 172
             ADHDNSINVFECI+IVNQAVSVIVTACRGV+VTPEKL RKYAE+YMALDIVLRGVS+IRL
Sbjct:   121 ADHDNSINVFECIHIVNQAVSVIVTACRGVEVTPEKLGRKYAEVYMALDIVLRGVSNIRL 180

Query:   173 AAMLGSMHGDGIAKMVHSALDTEAKIRGADQWNSLEIHSIEHQAAVDSFSHATFEVPAET 232
             AAMLG+MHGDGIAKMVHSALDTE KIRGAD W ++E H+ EHQA+V++FS+A FE+P ET
Sbjct:   181 AAMLGAMHGDGIAKMVHSALDTENKIRGADSWMAVESHAAEHQASVNAFSNARFELPPET 240

Query:   233 LAAGDEVAATLVVQTXXXXXXXXXXXXXXPTEKDPFAASEAINKEPELVGGFKKNKD-SS 291
             +AAGDE AA+L                  P  KDPFAASE INKE ELVGGFKK KD SS
Sbjct:   241 VAAGDEFAASLAPVVPESEQLKEEPE---PENKDPFAASETINKEKELVGGFKKTKDPSS 297

Query:   292 NDLTVALAGIEVTTLPPAEATQSTHINVXXXXXXXXXXXXSNDQATMEETFEGFSDAWGG 351
              DLT+ALAG+EVTTLPPAEATQSTHINV            SN+QAT+ ETFE FSDAWGG
Sbjct:   298 TDLTLALAGLEVTTLPPAEATQSTHINVEGFEGQYGGIEFSNEQATIGETFESFSDAWGG 357

Query:   352 GLDASEFVGPKKIAKKEGLSGLELLQTGPDAPAPSSKDGAGTPLDNLVKRTEMKGPEMYI 411
             GLD SEF+GPKKI KKEGL GLELL T  D  A   KDG    +DNLVK+ EMKGPEMYI
Sbjct:   358 GLDPSEFMGPKKIQKKEGLGGLELLHTS-DPKAVEGKDGVN--IDNLVKKPEMKGPEMYI 414

Query:   412 VEQVNAEFRESLLARVGLMGAVYLRTMPKKTSGDDKDTEFSFRVEGTSAVKRFAVQSSKV 471
              E++  EFRESLLARVG+MG +YL+TMP K SG++K+TEFSFRVEGT+AVKRFA+QSS++
Sbjct:   415 SEEIRTEFRESLLARVGVMGVIYLKTMPPKGSGEEKETEFSFRVEGTTAVKRFAMQSSRI 474

Query:   472 SSLGDGMFHVRTAPSDEPIPIXXXXXXXXXXXXXXXXXXIKRHSGTLLSVMVQYVSNPDL 531
             SSLG+G+FHVRTAPS+EPIPI                  +KR SGTLLS+M+QYVSNPDL
Sbjct:   475 SSLGNGLFHVRTAPSEEPIPILKYSLQPKLTPLPLRVRMVKRISGTLLSLMIQYVSNPDL 534

Query:   532 PMPLNDVTFSLKLPVDPTLLKVSPKAVLNRSDRELKWIVPEIPVKGAPGKLRVRMPVXXX 591
             P PL +V F LKLPVDPTLLKVSPKA+LNR+DRELKW +PEIP+ G+PG+LR RMP+   
Sbjct:   535 PQPLKNVDFILKLPVDPTLLKVSPKAILNRTDRELKWQIPEIPLNGSPGRLRARMPIDSD 594

Query:   592 XXXXXXXIDVVCHVKFASQGMLSLSGVCLRPATEGKTDFYEVGHKYESGVYICN 645
                     D++C+VKF+ QG  SLSG+ LR A EG TDF+EV H+YE+GVY+CN
Sbjct:   595 NSEEEP--DIICYVKFSVQGNTSLSGISLRAAAEGNTDFFEVDHRYETGVYMCN 646


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.131   0.373    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      645       591   0.00084  120 3  11 23  0.43    34
                                                     36  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  617 (66 KB)
  Total size of DFA:  292 KB (2152 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  47.70u 0.14s 47.84t   Elapsed:  00:00:02
  Total cpu time:  47.70u 0.14s 47.84t   Elapsed:  00:00:02
  Start:  Tue May 21 03:43:37 2013   End:  Tue May 21 03:43:39 2013

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