BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044308
         (645 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O14526|FCHO1_HUMAN FCH domain only protein 1 OS=Homo sapiens GN=FCHO1 PE=1 SV=2
          Length = 889

 Score = 43.5 bits (101), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 11/158 (6%)

Query: 492 ILRYSL-LPRLTPLPLRVRLIKRHSGTLLSVMVQYVSNPD---LPMPLNDVTFSLKLPVD 547
           +LRY    P    +PL++    +   TL  V V+Y   P    +P PL +V   L +   
Sbjct: 738 LLRYQFSRPGPQSVPLQLSAHWQCGATLTQVSVEYGYRPGATAVPTPLTNVQILLPVGEP 797

Query: 548 PTLLKVSPKAVLNRSDRELKWIVPEIPVKGAPGKLRVRMPVDSSEEDGGEEIDVVCHVKF 607
            T +++ P A  N  ++ L W +P++   G  G+L       S E   G         +F
Sbjct: 798 VTNVRLQPAATWNLEEKRLTWRLPDVSEAGGSGRLSA-----SWEPLSGPSTPSPVAAQF 852

Query: 608 ASQGMLSLSGVCLRPATEGKTDFYEVGHKYESGVYICN 645
            S+G  +LSGV L     G      V  ++ +G+Y+ +
Sbjct: 853 TSEGT-TLSGVDLELVGSG-YRMSLVKRRFATGMYLVS 888


>sp|Q8N1G0|ZN687_HUMAN Zinc finger protein 687 OS=Homo sapiens GN=ZNF687 PE=1 SV=1
          Length = 1237

 Score = 35.0 bits (79), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)

Query: 503 PLPLRVRLIKRHSGTLLSVMVQYVSNPDLPMPLNDVTFSLKLPVDPTLLKVSP 555
           PL +R++ IK   G +   + Q  S+PD P PL +  F      + +LLK+SP
Sbjct: 327 PLKVRIKTIKTSCGNITRTVTQVPSDPDPPAPLAEGAFL----AEASLLKLSP 375


>sp|Q3KHD6|RSMJ_PSEPF Ribosomal RNA small subunit methyltransferase J OS=Pseudomonas
           fluorescens (strain Pf0-1) GN=rsmJ PE=3 SV=2
          Length = 260

 Score = 34.7 bits (78), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 25/49 (51%)

Query: 341 TFEGFSDAWGGGLDASEFVGPKKIAKKEGLSGLELLQTGPDAPAPSSKD 389
           TFE  ++ W   L+    V   + A + G  GL+L Q GPDAP P   D
Sbjct: 18  TFEAQAEQWAQRLNLPLQVADGEFALQVGEQGLQLQQLGPDAPGPVRVD 66


>sp|Q3AEQ7|ILVC_CARHZ Ketol-acid reductoisomerase OS=Carboxydothermus hydrogenoformans
           (strain Z-2901 / DSM 6008) GN=ilvC PE=3 SV=1
          Length = 330

 Score = 34.3 bits (77), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 11/77 (14%)

Query: 354 DASEF----VGPKKIA---KKEGLSGLELLQTGPDAPAPSSKDGAGTPLDNLVKRTEMKG 406
           D +E+    VGP+ I    KKE    LE +Q G  A     ++ AG P+ N +KR E + 
Sbjct: 253 DTAEYGDYMVGPRIITEETKKEMKKVLEEIQNGTFAKNWILENMAGRPVYNAIKRREQE- 311

Query: 407 PEMYIVEQVNAEFRESL 423
              +++E+V AE R+ +
Sbjct: 312 ---HLIEKVGAELRQMM 325


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.131    0.372 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 236,763,358
Number of Sequences: 539616
Number of extensions: 10260756
Number of successful extensions: 22377
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 22355
Number of HSP's gapped (non-prelim): 42
length of query: 645
length of database: 191,569,459
effective HSP length: 124
effective length of query: 521
effective length of database: 124,657,075
effective search space: 64946336075
effective search space used: 64946336075
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)