Query 044308
Match_columns 645
No_of_seqs 48 out of 50
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 23:31:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044308.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044308hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g9h_A Suppressor of yeast pro 100.0 3.9E-42 1.3E-46 352.0 23.7 240 398-644 57-326 (328)
2 1w63_M Adaptor-related protein 99.5 6.7E-12 2.3E-16 130.3 31.4 225 408-644 172-420 (423)
3 2vgl_M AP-2 complex subunit MU 99.4 8E-11 2.7E-15 122.7 27.3 226 408-644 174-433 (435)
4 1i31_A Clathrin coat assembly 99.2 2.5E-09 8.5E-14 108.0 21.9 226 408-644 53-312 (314)
5 4en2_M AP-1 complex subunit MU 99.1 3.7E-09 1.3E-13 104.9 17.1 221 408-644 15-263 (266)
6 3ml6_A Chimeric complex betwee 99.0 2.5E-08 8.5E-13 103.9 22.7 230 400-644 119-383 (385)
7 3l81_A AP-4 complex subunit MU 98.8 3.5E-07 1.2E-11 92.5 22.4 223 408-644 36-299 (301)
8 2vgl_S AP-2 complex subunit si 96.8 0.0079 2.7E-07 54.1 10.4 69 93-167 53-121 (142)
9 1w63_Q Adapter-related protein 96.0 0.0047 1.6E-07 56.9 4.4 69 93-167 53-121 (158)
10 3tjz_C Coatomer subunit zeta-1 94.4 0.029 9.8E-07 51.9 4.0 71 93-168 63-133 (153)
11 4hpq_A ATG31, KLTH0C07942P; au 71.9 0.61 2.1E-05 39.2 -0.6 36 536-571 4-40 (69)
12 2khe_A Toxin RELE, toxin-like 60.1 13 0.00045 28.6 4.9 19 93-111 61-82 (89)
13 2otr_A Hypothetical protein HP 46.8 24 0.00081 28.8 4.6 29 83-111 53-84 (98)
14 2xzz_A Protein-glutamine gamma 46.6 1.2E+02 0.0042 26.2 9.3 75 516-618 19-93 (102)
15 1wmi_A RELE, hypothetical prot 38.4 30 0.001 26.6 3.8 21 94-116 63-86 (90)
16 3bpq_B Toxin RELE3; protein to 38.0 27 0.00093 27.1 3.5 18 94-111 60-78 (88)
17 1z8m_A Conserved hypothetical 26.8 44 0.0015 26.4 3.0 32 84-116 54-85 (88)
18 3kxe_A Toxin protein PARE-1; c 25.2 67 0.0023 27.4 4.1 25 93-117 81-105 (110)
19 3oei_C RELK (toxin RV3358); to 23.3 70 0.0024 27.6 3.8 28 79-106 59-87 (96)
20 4fxi_A MRNA interferase RELE; 23.2 60 0.0021 27.7 3.4 19 93-111 58-79 (95)
21 3g5o_B Uncharacterized protein 20.6 1.1E+02 0.0036 25.8 4.4 28 83-111 64-94 (102)
22 1vjj_A Protein-glutamine gluta 20.0 4.4E+02 0.015 30.2 10.3 76 516-618 607-682 (692)
No 1
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-42 Score=351.99 Aligned_cols=240 Identities=17% Similarity=0.283 Sum_probs=191.2
Q ss_pred ccccccc--cCCce--EEEEEEEEEEecceeEEEeeeeEEEEEecCCCCCCCCCceeEEEEEeccchhhhhccccccccc
Q 044308 398 LVKRTEM--KGPEM--YIVEQVNAEFRESLLARVGLMGAVYLRTMPKKTSGDDKDTEFSFRVEGTSAVKRFAVQSSKVSS 473 (645)
Q Consensus 398 lv~~~e~--~~p~~--afTE~inA~FkGs~LvRVG~~GiVrvfT~~P~pa~~~k~~vlSFRL~~tS~Vk~F~pns~l~~S 473 (645)
++|..|| ++|.+ +|+|+|||||||+++.||.+.|.|.+-..+...++......++|||+|++++|+++||.+++++
T Consensus 57 ~~kHpel~~~~pGLnASI~E~VNA~Fkgg~~tk~~v~GEiaLsy~~~~~s~~p~p~~l~fRL~N~~~Lekv~pN~~fv~~ 136 (328)
T 3g9h_A 57 LFQHSSLDTSQFGLNASIAEVLNASFKDGMLQNSQLIGEIALNYLPNSVMNSPLPIGINLRINNGAKFEKVILNQAFIER 136 (328)
T ss_dssp ----------CCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEECCSSSCCCCCSEEEEEEETGGGEEEEEECTTTEEE
T ss_pred cccCcccCCCCCceeEEEEEEEEEEEECCcEEEEEEEEEEEEecCCCccccCCCCccEEEEecCcchhheeeCCHHHhcc
Confidence 7899999 89998 9999999999999999999999999885443211112345999999999999999999999987
Q ss_pred CCCcceEEecCCC-CCCcceEEeeeCCCCCCCCcEEEEEEeecCceEEEEEEEEeCCCCCC-----CccceEEEeecCC-
Q 044308 474 LGDGMFHVRTAPS-DEPIPILRYSLLPRLTPLPLRVRLIKRHSGTLLSVMVQYVSNPDLPM-----PLNDVTFSLKLPV- 546 (645)
Q Consensus 474 ~~tgdF~vr~~aS-yynVpILKYql~pg~~p~PL~lr~~wk~~~tlt~V~VdY~yNP~lp~-----PLtnVq~iL~VPv- 546 (645)
..+++|||+...- .-.+++|||||.+ +.+||+|+.+|||+++.++|+|||+|||+.+. +|+||+|+|+|++
T Consensus 137 ~~~~eF~vn~~~L~sktv~~lKYqVs~--~~~PL~l~p~WK~E~~qtsliI~Yk~NP~~~~~~~~~~L~Nv~~~V~ldGa 214 (328)
T 3g9h_A 137 VAPEEFKVNPSFIDSRTLGAIKYSIKE--PIAPIVIHPVWRFESHQASVVLTVKMSPSLPDEISQIVIEDLVVFVNIDGA 214 (328)
T ss_dssp EETTEEEECTTTTBTCEEEEEEEEEES--CCCSEEEEEEEEECSSEEEEEEEEEECTTSCTTCCEEEEEEEEEEEEBCSS
T ss_pred CCCCCEEEchHHhcccceeeEEEEECC--CCCCeEEEeeeecCCCeeEEEEEEEECCCCcCcCCCceeeeEEEEEEeCCC
Confidence 6789999986542 3569999999976 99999999999999999999999999998776 8999999998877
Q ss_pred CCCccccccccccccccceeeEEccC-CCCC--CCCceEEEEeecCCCCCCCCCccceEEEEEEeecCCc--------cc
Q 044308 547 DPTLLKVSPKAVLNRSDRELKWIVPE-IPVK--GAPGKLRVRMPVDSSEEDGGEEIDVVCHVKFASQGML--------SL 615 (645)
Q Consensus 547 d~tlLqs~P~A~WN~eerrl~WkLPd-Is~~--gg~G~LrAr~~~~sgpad~ps~P~~~~aVQFsseGs~--------TL 615 (645)
..+++|++|.|+||+|++|++||||| |..+ |++|+|+|||++ +|+ +...|.. +.|||.++|.. .-
T Consensus 215 ~ats~qskP~gtwn~e~~ri~Wkl~e~l~l~~~g~~gkLiARf~~-~g~--~~~~~~g-V~akF~~~~~~~~~~~~~~~g 290 (328)
T 3g9h_A 215 NATSALSKPQGSFSKEKKRITWRFKEPVVLTRNGEGQRLIARFIT-DGL--AHESAKG-VITKFTISETDNVALPHSGAG 290 (328)
T ss_dssp CEEEEEESSSCCBCSSSCEEEEECSSCEEEETTCCCEEEEEEEEE-SSC--CCBCSSC-EEEEEEECCCSCSSCTTTTCS
T ss_pred ceeEEEecCCceeccccCEEEEECCCCcccccCCCCCeEEEEEEc-CCC--CCCCCCc-EEEEEEEeCCCcccccccccC
Confidence 35599999999999999999999999 5433 557999999999 553 1122333 89999999985 57
Q ss_pred cceeeeecCC--------Cccceeeccceeccceeec
Q 044308 616 SGVCLRPATE--------GKTDFYEVGHKYESGVYIC 644 (645)
Q Consensus 616 SGVdlEl~g~--------Gyr~fslVkkRFaTG~Yl~ 644 (645)
|||.++.... -+.+ -...|+.++|+|..
T Consensus 291 sgi~i~~~~~~~~dPF~~~W~~-v~~~r~l~~G~Y~~ 326 (328)
T 3g9h_A 291 SGITLTCQELDENNPFGGEWLD-VNTKRTLTTGNYHG 326 (328)
T ss_dssp CCCEEEEEEESSSCTTCCCCEE-CEEEEEEEEEEEEE
T ss_pred CceeEEecccccCCCCcCcccc-cceEEEEeeeEEEe
Confidence 7887764421 2333 35678999999974
No 2
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.54 E-value=6.7e-12 Score=130.32 Aligned_cols=225 Identities=18% Similarity=0.202 Sum_probs=146.0
Q ss_pred ceEEEEEEEEEEec-ceeEEEeeeeEEEEEecCCCCCCCCCceeEEEEEeccchhhh-------------h--ccccccc
Q 044308 408 EMYIVEQVNAEFRE-SLLARVGLMGAVYLRTMPKKTSGDDKDTEFSFRVEGTSAVKR-------------F--AVQSSKV 471 (645)
Q Consensus 408 ~~afTE~inA~FkG-s~LvRVG~~GiVrvfT~~P~pa~~~k~~vlSFRL~~tS~Vk~-------------F--~pns~l~ 471 (645)
-+-+.|.||+-+.- +.+.+.-+.|.|.++.-..--| .+++.|.+...++. + =|+..+-
T Consensus 172 ~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P------~~~l~Ln~~~~~~~~~~~~~~~v~l~d~~fHpcV~~~ 245 (423)
T 1w63_M 172 FLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMP------ELRLGLNDKVLFDNTGRGKSKSVELEDVKFHQCVRLS 245 (423)
T ss_dssp EEEEEEEEEEEEETTTEEEEEEEEEEEEEEEECSSCC------EEEEEECSCC-------------CEEEEEECTTEEES
T ss_pred EEEEEEEEEEEECCCCCEEEEEEEEEEEEEEEeCCCC------eEEEEECCccccccccccccCceEcccccccccccHH
Confidence 35578999999864 5688888999999998777766 78888887654331 1 0111000
Q ss_pred ccCCCcceEEecCCCCCCcceEEeeeCCCCCCCCcEEEEEEee-cCceEEEEEEEEeCCCCCCCccceEEEeecCCCCCc
Q 044308 472 SSLGDGMFHVRTAPSDEPIPILRYSLLPRLTPLPLRVRLIKRH-SGTLLSVMVQYVSNPDLPMPLNDVTFSLKLPVDPTL 550 (645)
Q Consensus 472 ~S~~tgdF~vr~~aSyynVpILKYql~pg~~p~PL~lr~~wk~-~~tlt~V~VdY~yNP~lp~PLtnVq~iL~VPvd~tl 550 (645)
.=..++ .+...|+.-++++|+|++... ..+|+++....+. +++.+.++|.-+.+-.....+.||.|.+|+|.+..+
T Consensus 246 ~f~~~r--~isf~PPdg~F~Lm~Yr~~~~-~~~P~~i~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~V~I~IP~P~~~~~ 322 (423)
T 1w63_M 246 RFENDR--TISFIPPDGEFELMSYRLNTH-VKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDADS 322 (423)
T ss_dssp SSSSCC--EEEECCCSEEEEEEEEEEECC-CCCTTCCEEEEEEETTTEEEEEEEEECCSCTTSEEESCEEEEECCTTCCC
T ss_pred HhCCCC--eEEEECCCCcEEEEEEEecCC-cCCCEEEEEEEEecCCCEEEEEEEEcccCCCcceeeEEEEEEeCCCCccc
Confidence 000111 223357777899999999865 4589988877654 445444443333221223458999999999987664
Q ss_pred cccc---cccccccccceeeEEccCCCCCCCCceEEEEeecCCCCCCCCCccceEEEEEEeecCCccccceeeeec---C
Q 044308 551 LKVS---PKAVLNRSDRELKWIVPEIPVKGAPGKLRVRMPVDSSEEDGGEEIDVVCHVKFASQGMLSLSGVCLRPA---T 624 (645)
Q Consensus 551 Lqs~---P~A~WN~eerrl~WkLPdIs~~gg~G~LrAr~~~~sgpad~ps~P~~~~aVQFsseGs~TLSGVdlEl~---g 624 (645)
.+.. =.+.++.+++.+.|+|+.|+. +....|++++.+.+.....+....+ +.|+|+..+. |+||+.++-. .
T Consensus 323 ~~~~~~~G~~~y~~~~~~l~W~I~~i~~-~~~~~l~~~~~l~~~~~~~~~~~~p-i~v~F~i~~~-t~Sgl~V~~l~v~~ 399 (423)
T 1w63_M 323 PKFKTTVGSVKWVPENSEIVWSVKSFPG-GKEYLMRAHFGLPSVEAEDKEGKPP-ISVKFEIPYF-TTSGIQVRYLKIIE 399 (423)
T ss_dssp CEEEESSSEEEEETGGGEEEEECSEEET-TCEEEEEEEEEC----------CCC-EEEEBCCSSC-CTTCCCEEEEEEEC
T ss_pred ceEEecCccEEEecCCCEEEEEeCcCCC-CCcEEEEEEEEccCCCcccccCCCc-EEEEEEECCE-eCCCCEEEEEEeEc
Confidence 4433 347788999999999999852 2235799999887653111233334 7999999987 9999876533 2
Q ss_pred -CCccceeeccceeccceeec
Q 044308 625 -EGKTDFYEVGHKYESGVYIC 644 (645)
Q Consensus 625 -~Gyr~fslVkkRFaTG~Yl~ 644 (645)
.||.-|.-||--=.+|.|-+
T Consensus 400 ~~~y~~~kwVrY~t~sg~y~~ 420 (423)
T 1w63_M 400 KSGYQAIPWVRYITQNGDYQL 420 (423)
T ss_dssp SSCCCCEEEEEEEEEBSCEEE
T ss_pred cCCCCCcCceEEEEeCCcEEE
Confidence 48988888877777788865
No 3
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=99.41 E-value=8e-11 Score=122.68 Aligned_cols=226 Identities=16% Similarity=0.202 Sum_probs=147.7
Q ss_pred ceEEEEEEEEEEec-ceeEEEeeeeEEEEEecCCCCCCCCCceeEEEEEeccchhhhhccc--ccccc----cCCCcceE
Q 044308 408 EMYIVEQVNAEFRE-SLLARVGLMGAVYLRTMPKKTSGDDKDTEFSFRVEGTSAVKRFAVQ--SSKVS----SLGDGMFH 480 (645)
Q Consensus 408 ~~afTE~inA~FkG-s~LvRVG~~GiVrvfT~~P~pa~~~k~~vlSFRL~~tS~Vk~F~pn--s~l~~----S~~tgdF~ 480 (645)
-+-+.|.||+-+.- +.+.+.-+.|.|.++.-..--| .+.+.|.+.-.++.=-.. ..... +-.-.|+.
T Consensus 174 ~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P------~~~l~ln~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~ 247 (435)
T 2vgl_M 174 FLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMP------ECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCT 247 (435)
T ss_dssp EEEEEEEEEEEECTTCCEEEEEEEEEEEEEEECSSCC------EEEEEECSSSCC-----------------CCCCCEEE
T ss_pred EEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEEeCCCC------eEEEEeCchhhcccccccccccccccccCceEccccc
Confidence 45678999999953 5588888999999998777766 788888764222100000 00000 00001221
Q ss_pred ---------------EecCCCCCCcceEEeeeCCCCCCCCcEEEEEEeec-CceEEEEEEEEeCCCCCCCccceEEEeec
Q 044308 481 ---------------VRTAPSDEPIPILRYSLLPRLTPLPLRVRLIKRHS-GTLLSVMVQYVSNPDLPMPLNDVTFSLKL 544 (645)
Q Consensus 481 ---------------vr~~aSyynVpILKYql~pg~~p~PL~lr~~wk~~-~tlt~V~VdY~yNP~lp~PLtnVq~iL~V 544 (645)
+...|+.-++++|+|++... ..+||++....+-. ++.+.++|.-+.+-.....+.||.|.+|+
T Consensus 248 fH~cV~~~~f~~~r~isF~PPdg~F~Lm~Yr~~~~-~~~P~~i~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~V~I~IP~ 326 (435)
T 2vgl_M 248 FHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKD-IILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPT 326 (435)
T ss_dssp ECTTEEEC-----CCEEECCCSEEEEEEEEEECSS-CCCSEEEEEEEECCTTTEEEEEEEEEECSCTTSEEEEEEEEEEC
T ss_pred cceeecHhHhccCceEEEECCCCcEEEEEEEecCC-cCCCeEEEEEEEecCCCEEEEEEEEeCCCCCCceeeEEEEEEEC
Confidence 22356777899999999864 46899998666533 34444444433322223458999999999
Q ss_pred CCCCCcccccc---ccccccccceeeEEccCCCCCCCCceEEEEeecCCCCCCCCCccceEEEEEEeecCCccccceeee
Q 044308 545 PVDPTLLKVSP---KAVLNRSDRELKWIVPEIPVKGAPGKLRVRMPVDSSEEDGGEEIDVVCHVKFASQGMLSLSGVCLR 621 (645)
Q Consensus 545 Pvd~tlLqs~P---~A~WN~eerrl~WkLPdIs~~gg~G~LrAr~~~~sgpad~ps~P~~~~aVQFsseGs~TLSGVdlE 621 (645)
|.+..+.+..+ .+.|+.+++.+.|+|+.|+. +....|++++.+.+.....+....+ +.|+|... . |+||+.++
T Consensus 327 P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~~~~~-~~~~~l~~~~~l~~~~~~~~~~~~p-i~v~F~i~-~-t~Sgl~V~ 402 (435)
T 2vgl_M 327 PLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG-MKESQISAEIELLPTNDKKKWARPP-ISMNFEVP-F-APSGLKVR 402 (435)
T ss_dssp CSSCCCEEEEESSSEEEEETTTTEEEEEEEEEET-TCEEEEEEEEECCCCSCSCCCCCCC-EEEEEEES-S-CTTCCCEE
T ss_pred CCCCCCceEEecceeEEEccCCCEEEEEeccCCC-CCCEEEEEEEEecCCCcCcccCCCc-EEEEEEEE-e-cccccEEE
Confidence 98876554433 47789999999999999852 2344899999987652111222345 79999999 6 99998754
Q ss_pred ---ecC-----CCccceeeccceeccceeec
Q 044308 622 ---PAT-----EGKTDFYEVGHKYESGVYIC 644 (645)
Q Consensus 622 ---l~g-----~Gyr~fslVkkRFaTG~Yl~ 644 (645)
+.. ++|.-|.-||--=.+|.|-|
T Consensus 403 ~l~v~~~~~~~~~y~~~kwVrY~t~sg~y~~ 433 (435)
T 2vgl_M 403 YLKVFEPKLNYSDHDVIKWVRYIGRSGIYET 433 (435)
T ss_dssp EEEEECSSSSCBGGGSEEEEEEEEEEEEEEE
T ss_pred EEEEeccccccCCCCCcCceEEEEeCCeEEE
Confidence 333 47888888876666788865
No 4
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A
Probab=99.17 E-value=2.5e-09 Score=108.00 Aligned_cols=226 Identities=16% Similarity=0.205 Sum_probs=148.2
Q ss_pred ceEEEEEEEEEEec-ceeEEEeeeeEEEEEecCCCCCCCCCceeEEEEEeccchhhhhcccc--cccc----cCCCcceE
Q 044308 408 EMYIVEQVNAEFRE-SLLARVGLMGAVYLRTMPKKTSGDDKDTEFSFRVEGTSAVKRFAVQS--SKVS----SLGDGMFH 480 (645)
Q Consensus 408 ~~afTE~inA~FkG-s~LvRVG~~GiVrvfT~~P~pa~~~k~~vlSFRL~~tS~Vk~F~pns--~l~~----S~~tgdF~ 480 (645)
-+-+.|.||+-+.- +.+++.=+.|.|.++.-..--+ .+.+.|.+.-.+++--... .... .-.-.|+.
T Consensus 53 ~vdV~E~v~~~i~~~G~v~~~eV~G~I~~~~~LsG~P------~l~l~Ln~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~ 126 (314)
T 1i31_A 53 FLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMP------ECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCT 126 (314)
T ss_dssp EEEEEEEEEEEECSSCCEEEEEEEEEEEEEEECSSSC------EEEEEESCCC-----------------CCCCCCSEEE
T ss_pred EEEEEEEEEEEECCCCCEEEEEEEEEEEEEEEcCCCC------eEEEEECCchhccccccccccccccccCCceEccccc
Confidence 45678999999954 4588888999999998777766 7888887653222100000 0000 00001222
Q ss_pred ---------------EecCCCCCCcceEEeeeCCCCCCCCcEEEEEEee-cCceEEEEEEEEeCCCCCCCccceEEEeec
Q 044308 481 ---------------VRTAPSDEPIPILRYSLLPRLTPLPLRVRLIKRH-SGTLLSVMVQYVSNPDLPMPLNDVTFSLKL 544 (645)
Q Consensus 481 ---------------vr~~aSyynVpILKYql~pg~~p~PL~lr~~wk~-~~tlt~V~VdY~yNP~lp~PLtnVq~iL~V 544 (645)
+...|+.-++.+|+|++... ..+||++....+. +++.+.++|.-+.+-.....+.||.|.+|+
T Consensus 127 FHpcV~l~~f~~~r~IsFiPPDG~F~Lm~Yr~~~~-~~lP~~v~~~~~~~g~~~iE~~l~~~~~~~~~~~~~nV~I~IP~ 205 (314)
T 1i31_A 127 FHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKD-IILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPT 205 (314)
T ss_dssp ECTTSBCC----CCCEEECCCSEEEEEEEEEECSS-CCCCEEEEEEEEEETTTEEEEEEEEEECSCTTCEEEEEEEEEEC
T ss_pred ccccccHHHcCCcceEEEECCCCCeEEEEEEecCC-cCCCEEEEEEEEecCCcEEEEEEEEccCCCCcceeeEEEEEEEC
Confidence 23356777899999999874 4689999866664 344444444443332233459999999999
Q ss_pred CCCCCcccccc---ccccccccceeeEEccCCCCCCCCceEEEEeecCCCCCCCCCccceEEEEEEeecCCccccceeee
Q 044308 545 PVDPTLLKVSP---KAVLNRSDRELKWIVPEIPVKGAPGKLRVRMPVDSSEEDGGEEIDVVCHVKFASQGMLSLSGVCLR 621 (645)
Q Consensus 545 Pvd~tlLqs~P---~A~WN~eerrl~WkLPdIs~~gg~G~LrAr~~~~sgpad~ps~P~~~~aVQFsseGs~TLSGVdlE 621 (645)
|.+..+.+..+ .+.|+.+++.+.|+|+.|+. +..-.|+++|.+.+.....+....+ +.|+|+.. . |+||+.++
T Consensus 206 P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~~i~g-~~e~~l~~~~~l~s~~~~~~~~~~p-i~v~F~ip-~-t~Sgl~V~ 281 (314)
T 1i31_A 206 PLNTSGVQVICMKGKAKYKASENAIVWKIKRMAG-MKESQISAEIELLPTNDKKKWARPP-ISMNFEVP-F-APSGLKVR 281 (314)
T ss_dssp CTTEEEEEEECSSSEEEEEGGGTEEEEEEEEEES-SEEEEEEEEEEECCCCSSSCCCCCC-EEEEEEES-S-CTTCCCEE
T ss_pred CCCcccceEEecCceEEEecCCCEEEEEeCcCCC-CCcEEEEEEEEecCCCcCCccCCCc-EEEEEEEe-e-cccCcEEE
Confidence 98766444433 57899999999999999952 1233899999987642111222344 79999999 6 99998765
Q ss_pred ec---C-----CCccceeeccceeccceeec
Q 044308 622 PA---T-----EGKTDFYEVGHKYESGVYIC 644 (645)
Q Consensus 622 l~---g-----~Gyr~fslVkkRFaTG~Yl~ 644 (645)
-+ . ++|.-|.-||--=.+|.|-|
T Consensus 282 ~l~v~e~~~~~~~y~~~kwVrYit~sg~y~~ 312 (314)
T 1i31_A 282 YLKVFEPKLNYSDHDVIKWVRYIGRSGIYET 312 (314)
T ss_dssp EEEEECSSSSCCGGGCEEEEEEEEEEEEEEE
T ss_pred EEEEeccccccCCCCccCceEEEEeCCeEEE
Confidence 33 3 47888888876667788865
No 5
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Probab=99.06 E-value=3.7e-09 Score=104.93 Aligned_cols=221 Identities=19% Similarity=0.230 Sum_probs=148.9
Q ss_pred ceEEEEEEEEEEec-ceeEEEeeeeEEEEEecCCCCCCCCCceeEEEEEeccchhhhhcccccccccC--CCcceEE---
Q 044308 408 EMYIVEQVNAEFRE-SLLARVGLMGAVYLRTMPKKTSGDDKDTEFSFRVEGTSAVKRFAVQSSKVSSL--GDGMFHV--- 481 (645)
Q Consensus 408 ~~afTE~inA~FkG-s~LvRVG~~GiVrvfT~~P~pa~~~k~~vlSFRL~~tS~Vk~F~pns~l~~S~--~tgdF~v--- 481 (645)
-+.+.|.|++-+.- +.+.+.-+.|.|.++.-..--+ .+.+.|.+...++.- ...... .-.|+.+
T Consensus 15 ~vdV~E~v~~~~~~~G~v~~~~v~G~i~~~~~lsG~p------~~~l~ln~~~~~~~~----~~~~~~~~~l~d~~fH~c 84 (266)
T 4en2_M 15 FLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMP------ELRLGLNDKVLFDNT----GRGKSKSVELEDVKFHQC 84 (266)
T ss_dssp EEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECCSCC------EEEEEECBHHHHHHT----TCTTSCCBCCEEEEECTT
T ss_pred EEEEEEEEEEEECCCCCEEEEEEEEEEEEEEECCCCC------EEEEEEcCccccccc----cccccCccCccccccccc
Confidence 46789999998864 5588888999999998776666 777777654322110 000000 0112322
Q ss_pred ------------ecCCCCCCcceEEeeeCCCCCCCCcEEEEEEe-ecCceEEEEEEEEeCCCCCCCccceEEEeecCCCC
Q 044308 482 ------------RTAPSDEPIPILRYSLLPRLTPLPLRVRLIKR-HSGTLLSVMVQYVSNPDLPMPLNDVTFSLKLPVDP 548 (645)
Q Consensus 482 ------------r~~aSyynVpILKYql~pg~~p~PL~lr~~wk-~~~tlt~V~VdY~yNP~lp~PLtnVq~iL~VPvd~ 548 (645)
+..|+.-.+.+|+|++.... .+|+.+..... .+.+.+.++|.++.+=.....++||.|.+|||.+.
T Consensus 85 V~~~~f~~~r~i~f~PPdg~F~Lm~yr~~~~~-~~Pi~i~~~~~~~~~~~vei~v~~k~~~~~~~~~~nV~I~IP~P~~~ 163 (266)
T 4en2_M 85 VRLSRFENDRTISFIPPDGEFELMSYRLNTHV-KPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDA 163 (266)
T ss_dssp BCHHHHHHHCCCEECCCSEEEEEEEEEECCCC-CCSEEEEEEEEEEETTEEEEEEEEEECBCTTCEEEEEEEEEECCTTC
T ss_pred cCHhHccccceEEEeCCCCceEEEEEEecCCC-CCCEEEEEEEecCCCEEEEEEEEEecCCCCCcEEEEEEEEECCCCCc
Confidence 33566778899999998754 57888765443 44567777777766544445799999999999876
Q ss_pred Cc--ccc-ccccccccccceeeEEccCCCCCCCC-ceEEEEeecCCCC-CCCCCccceEEEEEEeecCCccccceeeeec
Q 044308 549 TL--LKV-SPKAVLNRSDRELKWIVPEIPVKGAP-GKLRVRMPVDSSE-EDGGEEIDVVCHVKFASQGMLSLSGVCLRPA 623 (645)
Q Consensus 549 tl--Lqs-~P~A~WN~eerrl~WkLPdIs~~gg~-G~LrAr~~~~sgp-ad~ps~P~~~~aVQFsseGs~TLSGVdlEl~ 623 (645)
.. +++ .=.+.++.+++.|.|+|+.|+ |+. -.|++.+.+.+.. .+..+.| + +.|+|....- |+||+.++-.
T Consensus 164 ~~~~~~~~~G~~~y~~~~~~lvW~I~~~~--g~~e~~l~~~~~l~s~~~~~~~~~~-p-I~v~F~ip~~-t~SGl~V~~L 238 (266)
T 4en2_M 164 DSPKFKTTVGSVKWVPENSEIVWSVKSFP--GGKEYLMRAHFGLPSVEAEDKEGKP-P-ISVKFEIPYF-TTSGIQVRYL 238 (266)
T ss_dssp EEEEEEESSSEEEEETTTTEEEEEEEEEE--SSCEEEEEEEEEC----------CC-C-EEEEEEEESE-ESSCCCEEEE
T ss_pred CcceEEecCceEEEeccCCEEEEEEeeEC--CCcceEEEEEEEeCCCCCCCcccCC-c-EEEEEEeCCc-eeCCcEEEEE
Confidence 53 333 224788999999999999995 333 3799999887541 1222333 3 6999999987 9999987644
Q ss_pred C----CCccceeeccceeccceeec
Q 044308 624 T----EGKTDFYEVGHKYESGVYIC 644 (645)
Q Consensus 624 g----~Gyr~fslVkkRFaTG~Yl~ 644 (645)
. .+|.-|.-||--=.+|.|-|
T Consensus 239 ~v~e~~~y~~~kwVrY~T~sg~y~~ 263 (266)
T 4en2_M 239 KIIEKSGYQALPWVRYITQNGDYQL 263 (266)
T ss_dssp EEECSSCCCEEEEEEEEEECSSEEE
T ss_pred EeeccCCCCCCCCEEEEEeCCCEEE
Confidence 2 48888788877777888865
No 6
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=99.03 E-value=2.5e-08 Score=103.94 Aligned_cols=230 Identities=18% Similarity=0.256 Sum_probs=153.4
Q ss_pred ccccccCCceEEEEEEEEEEec-ceeEEEeeeeEEEEEecCCCCCCCCCceeEEEEEeccchhhh-------hcccccc-
Q 044308 400 KRTEMKGPEMYIVEQVNAEFRE-SLLARVGLMGAVYLRTMPKKTSGDDKDTEFSFRVEGTSAVKR-------FAVQSSK- 470 (645)
Q Consensus 400 ~~~e~~~p~~afTE~inA~FkG-s~LvRVG~~GiVrvfT~~P~pa~~~k~~vlSFRL~~tS~Vk~-------F~pns~l- 470 (645)
+|.|+ -+-+.|.||+-+.- +.+.+.-+.|.|.++.-..--| ++.+.|.+...++. +.++...
T Consensus 119 ~knEi---~vdV~E~v~~~~~~~G~v~~~eV~G~I~~k~~LsG~P------~~~l~LNd~~~~~~~~~~~~~~~~~~~~~ 189 (385)
T 3ml6_A 119 SRNEL---FLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMP------ECKFGMNDKIVIEKQGKGTADETSKSGKQ 189 (385)
T ss_dssp CCCEE---EEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSSCC------EEEEEECC---------------------
T ss_pred ccceE---EEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCC------eEEEEEcCccccccccccccccccccccC
Confidence 44444 56789999998864 5688888999999997776666 77787755422211 1111000
Q ss_pred --------cc-cCCCcce----EEecCCCCCCcceEEeeeCCCCCCCCcEEEEEEe-ecCceEEEEEEEEeCCCCCCCcc
Q 044308 471 --------VS-SLGDGMF----HVRTAPSDEPIPILRYSLLPRLTPLPLRVRLIKR-HSGTLLSVMVQYVSNPDLPMPLN 536 (645)
Q Consensus 471 --------~~-S~~tgdF----~vr~~aSyynVpILKYql~pg~~p~PL~lr~~wk-~~~tlt~V~VdY~yNP~lp~PLt 536 (645)
.+ +-+-..| .+...|+.-.+++|+|++... ..+|+++....+ .+.+.+.++|..+.+-.....++
T Consensus 190 ~i~l~d~~FH~CV~l~~f~~~r~IsFiPPDg~F~Lm~Yr~~~~-~~~Pf~i~~~v~~~~~~~vei~v~lk~~f~~~~~~~ 268 (385)
T 3ml6_A 190 SIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKD-IILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQ 268 (385)
T ss_dssp -CCCCEEEECTTBCCCCSSSCSEEEECCCSEEEEEEEEEECSS-CCCSEEEEEEEEEETTTEEEEEEEEEECSCTTCCEE
T ss_pred ceEccccccccccChhHccccceEEEeCCCCceEEEEEEcCCC-CCCCEEEEEEEEeCCCeEEEEEEEEeecCCCcceEE
Confidence 00 0011122 234467777999999999864 457999876555 44677777777776654455799
Q ss_pred ceEEEeecCCCCCcccc---ccccccccccceeeEEccCCCCCCC-CceEEEEeecCCCCCCCCCccceEEEEEEeecCC
Q 044308 537 DVTFSLKLPVDPTLLKV---SPKAVLNRSDRELKWIVPEIPVKGA-PGKLRVRMPVDSSEEDGGEEIDVVCHVKFASQGM 612 (645)
Q Consensus 537 nVq~iL~VPvd~tlLqs---~P~A~WN~eerrl~WkLPdIs~~gg-~G~LrAr~~~~sgpad~ps~P~~~~aVQFsseGs 612 (645)
||.|.+|+|.+....+. .=++.++.+++.+.|+|+.|+ |+ --.|++.|.+.+........-.+ +.|+|... -
T Consensus 269 nV~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~lvW~I~k~~--g~~e~~l~~~~~l~~~~~~~~~~~~P-I~v~F~Ip-~ 344 (385)
T 3ml6_A 269 KIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMA--GMKESQISAEIELLPTNDKKKWARPP-ISMNFEVP-F 344 (385)
T ss_dssp EEEEEEECCTTEEEEEEEESSSEEEEEGGGTEEEEEEEEEC--SSEEEEEEEEEEECCCSSCCSCCCCC-EEEEEEES-S
T ss_pred EEEEEecCCCCcccceEEecCceEEEeccCcEEEEEeeeEC--CCcceEEEEEEEECCCCCCccccCCC-EEEEEEEe-c
Confidence 99999999987654433 335778999999999999995 33 23699999886532112222334 69999999 5
Q ss_pred ccccceeeeecC--------CCccceeeccceeccceeec
Q 044308 613 LSLSGVCLRPAT--------EGKTDFYEVGHKYESGVYIC 644 (645)
Q Consensus 613 ~TLSGVdlEl~g--------~Gyr~fslVkkRFaTG~Yl~ 644 (645)
|+||+.++-.. ++|.-+.-||--=.+|.|-|
T Consensus 345 -t~SGl~Vr~L~v~e~~~~~~~y~~~kwVRYiT~sg~Y~~ 383 (385)
T 3ml6_A 345 -APSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYET 383 (385)
T ss_dssp -CTTCCCEEEEEEECSSSCCCGGGCEEEEEECEEEEEEEE
T ss_pred -cccCCEEEEEEEecccCcccCCCccccEEEEEECCCEEe
Confidence 99999875432 56888788877777888865
No 7
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens}
Probab=98.85 E-value=3.5e-07 Score=92.52 Aligned_cols=223 Identities=20% Similarity=0.239 Sum_probs=139.4
Q ss_pred ceEEEEEEEEEEec-ceeEEEeeeeEEEEEecCCCCCCCCCceeEEEEEeccchhh--------------hhcccccccc
Q 044308 408 EMYIVEQVNAEFRE-SLLARVGLMGAVYLRTMPKKTSGDDKDTEFSFRVEGTSAVK--------------RFAVQSSKVS 472 (645)
Q Consensus 408 ~~afTE~inA~FkG-s~LvRVG~~GiVrvfT~~P~pa~~~k~~vlSFRL~~tS~Vk--------------~F~pns~l~~ 472 (645)
-+-+.|.||+-+.- +.+.+.-+.|.|.++.-..--+ .+.+.|.....++ ++.--...
T Consensus 36 ~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P------~~~l~Lnd~~~~~~~~~~~~~~~~~l~d~~fH~cV-- 107 (301)
T 3l81_A 36 FLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGS------EMRIGLTEEFSVGKSELRGYGPGIRVDEVSFHSSV-- 107 (301)
T ss_dssp EEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCTTC------EEEEEECSSCEESCCTTTCCCSSSEESEEEEETTC--
T ss_pred EEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCC------eEEEEEcccccccccccccccCceEcccccccccc--
Confidence 46788999998853 5588888999999998777766 7888876432211 11000000
Q ss_pred cCCCcce----EEecCCCCCCcceEEeeeCCC-CCCCCcEEEEEEeecC--ceEEEEEEEEeCCCCCCCccceEEEeecC
Q 044308 473 SLGDGMF----HVRTAPSDEPIPILRYSLLPR-LTPLPLRVRLIKRHSG--TLLSVMVQYVSNPDLPMPLNDVTFSLKLP 545 (645)
Q Consensus 473 S~~tgdF----~vr~~aSyynVpILKYql~pg-~~p~PL~lr~~wk~~~--tlt~V~VdY~yNP~lp~PLtnVq~iL~VP 545 (645)
+-..| .+...|+.-.+.+|+|++... ...+||.+.....-.+ +.+.++|.-+.+=.....++||.|.+|||
T Consensus 108 --~~~~f~~~r~IsFiPPDg~F~Lm~Yr~~~~~~~~~P~~v~~~v~~~~~~~~ie~~l~l~~~f~~~~~~~nV~I~IPvP 185 (301)
T 3l81_A 108 --NLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPLPFRLFPSVQWDRGSGRLQVYLKLRCDLLSKSQALNVRLHLPLP 185 (301)
T ss_dssp --BCTTHHHHCEEEECCCSEEEEEEEEEECSCCSSCCSEEEEEEEEECTTTSEEEEEEEEEECSCTTCEEEEEEEEEECC
T ss_pred --ChhHccccceEEecCCCCeeEEEEEEecCCCccCCCEEEEEEEEECCCcEEEEEEEEEecCCCCCcEEEEEEEEEcCC
Confidence 11111 234467777899999999864 4579999986666544 44444443333323334689999999999
Q ss_pred CCCCccc--cc-cccccccccceeeEEccCCCCCCCCceEEEEeecCCCCC-C---------CCCccceEEEEEEeecCC
Q 044308 546 VDPTLLK--VS-PKAVLNRSDRELKWIVPEIPVKGAPGKLRVRMPVDSSEE-D---------GGEEIDVVCHVKFASQGM 612 (645)
Q Consensus 546 vd~tlLq--s~-P~A~WN~eerrl~WkLPdIs~~gg~G~LrAr~~~~sgpa-d---------~ps~P~~~~aVQFsseGs 612 (645)
.+....+ .+ ....|.-+++.|.|+|+.|+. +..-++++.+.+.+... + ..+.| + +.|+|....-
T Consensus 186 ~~~~~~~~~~~~~~G~~~y~~~~lvW~I~~~~g-~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~-P-I~v~F~ip~~ 262 (301)
T 3l81_A 186 RGVVSLSQELSSPEQKAELAEGALRWDLPRVQG-GSQLSGLFQMDVPGPPGPPSHGLSTSASPLGLG-P-ASLSFELPRH 262 (301)
T ss_dssp TTCEEEEEEESSTTCEEEEETTEEEEEECCEET-TCEEEEEEEEECCCCCC------------CCCC-C-EEEEEEEETC
T ss_pred CCcccceEEEeecCceEEEeCcEEEEEEeeECC-CcEEeEEEEEEecCCccccccccccccccccCC-C-EEEEEEeCCc
Confidence 8776444 43 333333388999999999962 11335556666543211 1 11234 3 5899999987
Q ss_pred ccccceeeeecC------CCccceeeccceeccceeec
Q 044308 613 LSLSGVCLRPAT------EGKTDFYEVGHKYESGVYIC 644 (645)
Q Consensus 613 ~TLSGVdlEl~g------~Gyr~fslVkkRFaTG~Yl~ 644 (645)
|+||+.++-.. .+|.-+.-||--=.+|.|-+
T Consensus 263 -t~SGl~Vr~L~v~e~~~~~y~~~kwVRYiT~sg~Y~~ 299 (301)
T 3l81_A 263 -TCSGLQVRFLRLAFRPSGNANPHKWVRHLSHSDAYVI 299 (301)
T ss_dssp -CSSCCCEEEEEEEC-------CEEEEEEEEEEEEEEE
T ss_pred -cccCcEEEEEEEecccccCCCCccceEEEEeCCcEEE
Confidence 99999876432 25666677766666788864
No 8
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=96.79 E-value=0.0079 Score=54.09 Aligned_cols=69 Identities=14% Similarity=0.292 Sum_probs=61.4
Q ss_pred ceeEEEEEEeceEEEEEEeecCCCCCCChhHHHHHHhhheeeEEeeccccccChhhhhhhhhHHHHHHHHhHhcc
Q 044308 93 SRYRVVYRLVNSIYVLGITNADHDNSINVFECINIVNQAVSVIVTACRGVDVTPEKLNRKYAEIYMALDIVLRGV 167 (645)
Q Consensus 93 ~~yrv~Yrlvn~iyvl~vt~a~~~~~~nvf~~~~~v~~av~V~v~~~rGvdvtp~kl~rky~evY~ald~vl~g~ 167 (645)
..++++||-.+++|+++++..+ .|....++++++-+.|+=.-++ .|+.+.|...|-.||++||-++-++
T Consensus 53 ~~~~~vy~~~~~Lyfv~~~~~~----~N~l~~le~L~~~ve~l~~yf~--~v~E~~I~~Nf~~vy~lLDE~id~G 121 (142)
T 2vgl_S 53 RNFKIIYRRYAGLYFCICVDVN----DNNLAYLEAIHNFVEVLNEYFH--NVCELDLVFNFYKVYTVVDEMFLAG 121 (142)
T ss_dssp TTEEEEEEEETTEEEEEEECTT----SCHHHHHHHHHHHHHHHHHHTT--SCCHHHHHHTHHHHHHHHHHHEETT
T ss_pred CCEEEEEEEECCEEEEEEeCCC----CCHHHHHHHHHHHHHHHHHHHc--cCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 4589999999999999999544 7999999999999999988887 6899999999999999998777654
No 9
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.05 E-value=0.0047 Score=56.91 Aligned_cols=69 Identities=19% Similarity=0.285 Sum_probs=61.4
Q ss_pred ceeEEEEEEeceEEEEEEeecCCCCCCChhHHHHHHhhheeeEEeeccccccChhhhhhhhhHHHHHHHHhHhcc
Q 044308 93 SRYRVVYRLVNSIYVLGITNADHDNSINVFECINIVNQAVSVIVTACRGVDVTPEKLNRKYAEIYMALDIVLRGV 167 (645)
Q Consensus 93 ~~yrv~Yrlvn~iyvl~vt~a~~~~~~nvf~~~~~v~~av~V~v~~~rGvdvtp~kl~rky~evY~ald~vl~g~ 167 (645)
..++++||-.+++|+++++..+ .|....++++.+-+.|+=.-++ .|+.+.|...|-.||++||-++-++
T Consensus 53 ~~~~~vy~~~~~Lyfv~~~~~~----~Nel~~le~L~~~vevl~~yf~--~v~E~~I~~Nf~~vy~lLDE~id~G 121 (158)
T 1w63_Q 53 RDLKVVYKRYASLYFCCAIEGQ----DNELITLELIHRYVELLDKYFG--SVCELDIIFNFEKAYFILDEFLMGG 121 (158)
T ss_dssp TTEEEEEEEETTEEEEEEECSS----SCHHHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHTTEETT
T ss_pred CCEEEEEEEECCEEEEEEecCC----CCHHHHHHHHHHHHHHHHHHHc--cCCHHHHHHhHHHHHHHHHHHHhCC
Confidence 5689999999999999999444 7999999999999999888887 6899999999999999999777654
No 10
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=94.38 E-value=0.029 Score=51.94 Aligned_cols=71 Identities=18% Similarity=0.278 Sum_probs=62.9
Q ss_pred ceeEEEEEEeceEEEEEEeecCCCCCCChhHHHHHHhhheeeEEeeccccccChhhhhhhhhHHHHHHHHhHhccc
Q 044308 93 SRYRVVYRLVNSIYVLGITNADHDNSINVFECINIVNQAVSVIVTACRGVDVTPEKLNRKYAEIYMALDIVLRGVS 168 (645)
Q Consensus 93 ~~yrv~Yrlvn~iyvl~vt~a~~~~~~nvf~~~~~v~~av~V~v~~~rGvdvtp~kl~rky~evY~ald~vl~g~~ 168 (645)
..+.++||--+++|++.++..+ .|....++++++-|.++=..+|| .|+.+.|...|--||+.||-++-++-
T Consensus 63 ~~~~~vy~~~~~Lyfv~~~~~~----eNel~ile~L~~~ve~l~~yf~~-~v~E~~I~~Nf~~vy~lLDE~id~G~ 133 (153)
T 3tjz_C 63 EGLTVVYKSSIDLYFYVIGSSY----ENELMLMTVLNCLFDSLSQMLRK-NVEKRALLENMEGLFLAVDEIVDGGV 133 (153)
T ss_dssp TTEEEEEEECSSCEEEEEEETT----SCHHHHHHHHHHHHHHHHHHHTS-CCCHHHHHHTHHHHHHHHHHHEETTE
T ss_pred CCEEEEEEEECCEEEEEEEcCC----CChHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHcCCE
Confidence 5688999999999999999544 79999999999999999988965 79999999999999999988876653
No 11
>4hpq_A ATG31, KLTH0C07942P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=71.93 E-value=0.61 Score=39.18 Aligned_cols=36 Identities=6% Similarity=-0.003 Sum_probs=31.8
Q ss_pred cceEEEeecCCCCC-ccccccccccccccceeeEEcc
Q 044308 536 NDVTFSLKLPVDPT-LLKVSPKAVLNRSDRELKWIVP 571 (645)
Q Consensus 536 tnVq~iL~VPvd~t-lLqs~P~A~WN~eerrl~WkLP 571 (645)
+|.+|.++||..-. ...-.|+..||.++-+.+|++-
T Consensus 4 ~NttVyVRlPg~Rp~gFVDPPp~~Wna~KD~~LW~II 40 (69)
T 4hpq_A 4 ENTIVYVRVAGRARNGFVDPLKFYWDLERDRSLWSSV 40 (69)
T ss_dssp SSCEEEEECSSCCCSCCCCCCCCCCHHHHHHHHHHHC
T ss_pred CCeEEEEEecCCCCCCCCCCCCCccChHHHHHHHHHH
Confidence 68999999998773 7788999999999999999874
No 12
>2khe_A Toxin RELE, toxin-like protein; toxin-antitoxin, RNAse, plasmid, hydrolase, structural genomics, NPPSFA; NMR {Thermus thermophilus}
Probab=60.09 E-value=13 Score=28.64 Aligned_cols=19 Identities=21% Similarity=0.569 Sum_probs=15.7
Q ss_pred ceeEEEEEEece---EEEEEEe
Q 044308 93 SRYRVVYRLVNS---IYVLGIT 111 (645)
Q Consensus 93 ~~yrv~Yrlvn~---iyvl~vt 111 (645)
+.|||.|++-++ |+|+.|.
T Consensus 61 ~~yriiY~i~~~~~~v~i~~i~ 82 (89)
T 2khe_A 61 GDYRLICHIQDREATVLVLRVG 82 (89)
T ss_dssp TTEEEEEEEEGGGTEEEEEEEE
T ss_pred CCEEEEEEEECCEEEEEEEEEc
Confidence 569999999876 7777776
No 13
>2otr_A Hypothetical protein HP0892; anti-parallel beta sheet, structural genomics, unknown funct; NMR {Helicobacter pylori}
Probab=46.77 E-value=24 Score=28.76 Aligned_cols=29 Identities=7% Similarity=0.219 Sum_probs=20.4
Q ss_pred ccceeEEeeeceeEEEEEEece---EEEEEEe
Q 044308 83 SSGQLIVGVESRYRVVYRLVNS---IYVLGIT 111 (645)
Q Consensus 83 ~sG~~vvgv~~~yrv~Yrlvn~---iyvl~vt 111 (645)
.+|.-.+=|.+.|||+|++-+. |+|+-|-
T Consensus 53 ~~g~~~~ri~~~yriiY~i~~~~~~V~i~~ig 84 (98)
T 2otr_A 53 LKDFRECHLKPDLLLVYQIKKQENTLFLVRLG 84 (98)
T ss_dssp CCSCEEEEEETTEEEEEEEETTTTEEEEEEEE
T ss_pred CCCeEEEEECCCEEEEEEEcCCceEEEEEEeC
Confidence 4564434456889999999875 7777665
No 14
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=46.59 E-value=1.2e+02 Score=26.23 Aligned_cols=75 Identities=25% Similarity=0.301 Sum_probs=45.9
Q ss_pred CceEEEEEEEEeCCCCCCCccceEEEeecCCCCCccccccccccccccceeeEEccCCCCCCCCceEEEEeecCCCCCCC
Q 044308 516 GTLLSVMVQYVSNPDLPMPLNDVTFSLKLPVDPTLLKVSPKAVLNRSDRELKWIVPEIPVKGAPGKLRVRMPVDSSEEDG 595 (645)
Q Consensus 516 ~tlt~V~VdY~yNP~lp~PLtnVq~iL~VPvd~tlLqs~P~A~WN~eerrl~WkLPdIs~~gg~G~LrAr~~~~sgpad~ 595 (645)
+..+.|.|.. .|| ||-||+|..|.+ ...+++ +...+++++|. +-++.+.++.+-.--
T Consensus 19 ~~~l~v~vsf-~NP-L~~~L~~c~~~v---EG~GL~------------~~~~~~~~~v~---pg~~~~~~~~~~P~~--- 75 (102)
T 2xzz_A 19 GQECEVQIVF-KNP-LPVTLTNVVFRL---EGSGLQ------------RPKILNVGDIG---GNETVTLRQSFVPVR--- 75 (102)
T ss_dssp SSCEEEEEEE-ECC-SSSCBCSEEEEE---EETTTE------------EEEEEEECCBC---TTCEEEEEEEECCCS---
T ss_pred CCeEEEEEEE-ECC-CCCcccCEEEEE---ECCCCC------------cceEEEcCcCC---CCCEEEEEEEEecCc---
Confidence 4556666666 455 899999999998 222332 22567788885 334677776555221
Q ss_pred CCccceEEEEEEeecCCccccce
Q 044308 596 GEEIDVVCHVKFASQGMLSLSGV 618 (645)
Q Consensus 596 ps~P~~~~aVQFsseGs~TLSGV 618 (645)
..+.. +.|.|+|. .|..|
T Consensus 76 -~G~~~-L~a~f~s~---~l~~v 93 (102)
T 2xzz_A 76 -PGPRQ-LIASLDSP---QLSQV 93 (102)
T ss_dssp -CSSCC-CEEEEECG---GGGSC
T ss_pred -ccceE-EEEEEECC---cccCC
Confidence 22223 68899987 45555
No 15
>1wmi_A RELE, hypothetical protein PHS013; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: d.298.1.2
Probab=38.35 E-value=30 Score=26.65 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=16.3
Q ss_pred eeEEEEEEece---EEEEEEeecCCC
Q 044308 94 RYRVVYRLVNS---IYVLGITNADHD 116 (645)
Q Consensus 94 ~yrv~Yrlvn~---iyvl~vt~a~~~ 116 (645)
.|||.|++-+. |+|+.|- +++
T Consensus 63 ~yriiY~i~~~~~~i~i~~i~--~~~ 86 (90)
T 1wmi_A 63 DYRVIYSVNWKDKVIKILKLK--PRG 86 (90)
T ss_dssp SSEEEEEEETTTTEEEEEEEE--CSC
T ss_pred CEEEEEEEECCceEEEEEEEe--ccc
Confidence 79999999875 7777776 553
No 16
>3bpq_B Toxin RELE3; protein toxin-antitoxin complex; 2.20A {Methanocaldococcus jannaschii}
Probab=38.02 E-value=27 Score=27.05 Aligned_cols=18 Identities=11% Similarity=0.185 Sum_probs=14.4
Q ss_pred eeEEEEEEece-EEEEEEe
Q 044308 94 RYRVVYRLVNS-IYVLGIT 111 (645)
Q Consensus 94 ~yrv~Yrlvn~-iyvl~vt 111 (645)
.|||.|++-+. |+|+.|-
T Consensus 60 ~yriiY~i~~~~v~i~~i~ 78 (88)
T 3bpq_B 60 NYSIGIEVNGDTIIFRRVL 78 (88)
T ss_dssp TEEEEEEEETTEEEEEEEE
T ss_pred CEEEEEEEECCEEEEEEEc
Confidence 89999999765 7777665
No 17
>1z8m_A Conserved hypothetical protein HP0894; structural genomics, helicobac pylori, unknown function; NMR {Helicobacter pylori} SCOP: d.298.1.2
Probab=26.78 E-value=44 Score=26.43 Aligned_cols=32 Identities=9% Similarity=0.079 Sum_probs=19.9
Q ss_pred cceeEEeeeceeEEEEEEeceEEEEEEeecCCC
Q 044308 84 SGQLIVGVESRYRVVYRLVNSIYVLGITNADHD 116 (645)
Q Consensus 84 sG~~vvgv~~~yrv~Yrlvn~iyvl~vt~a~~~ 116 (645)
+|.--.=|.+.|||+|++-+...+ .+...+|+
T Consensus 54 ~g~~~~ri~~dyrliY~i~~~~v~-i~~ig~h~ 85 (88)
T 1z8m_A 54 KPFRECHIKPDVLLVYLVKDDELI-LLRLGSHS 85 (88)
T ss_dssp TTSEECCSSTTCEEEEEEETTEEE-EEEEECTT
T ss_pred CCeEEEEECCCEEEEEEEeCCEEE-EEEcCChH
Confidence 453333356889999999876422 34444664
No 18
>3kxe_A Toxin protein PARE-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=25.25 E-value=67 Score=27.39 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=18.8
Q ss_pred ceeEEEEEEeceEEEEEEeecCCCC
Q 044308 93 SRYRVVYRLVNSIYVLGITNADHDN 117 (645)
Q Consensus 93 ~~yrv~Yrlvn~iyvl~vt~a~~~~ 117 (645)
++|+|+||-=+.|+|+.|--.-+|.
T Consensus 81 ~~Y~I~Y~~~~~V~IlrV~h~rrd~ 105 (110)
T 3kxe_A 81 GSHVVFYRVGVRVEIIRVLHQSMNA 105 (110)
T ss_dssp ETEEEEEEESSSEEEEEEEETTSCC
T ss_pred CCEEEEEEeCCEEEEEEEEECccCH
Confidence 4699999933479999998665543
No 19
>3oei_C RELK (toxin RV3358); toxin-antitoxin systems, protein-protein complex, tuberculos structural genomics consortium, protein binding; HET: MLZ FLC; 2.15A {Mycobacterium tuberculosis} SCOP: d.298.1.0
Probab=23.33 E-value=70 Score=27.62 Aligned_cols=28 Identities=29% Similarity=0.390 Sum_probs=19.5
Q ss_pred cccc-ccceeEEeeeceeEEEEEEeceEE
Q 044308 79 PLAA-SSGQLIVGVESRYRVVYRLVNSIY 106 (645)
Q Consensus 79 pla~-~sG~~vvgv~~~yrv~Yrlvn~iy 106 (645)
||-. ++|.--+-|-..|||+|++.++..
T Consensus 59 ~Lkg~l~g~~s~RI~~~yRivy~i~d~~i 87 (96)
T 3oei_C 59 PLQGELSGYWSRRIDDEHRLVYRAGDDEV 87 (96)
T ss_dssp ECCGGGTTCEEEESSSSCEEEEEECSSEE
T ss_pred hcCCCCCCcEEEECCCCEEEEEEEECCEE
Confidence 4444 567555556566999999987753
No 20
>4fxi_A MRNA interferase RELE; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, B-ME on Cys50; HET: CME; 1.80A {Escherichia coli} PDB: 4fxe_D 3kha_A* 4fxh_A* 2kc8_A 2kc9_A 3kiq_y* 3kis_y* 3kiu_y* 3kix_y*
Probab=23.23 E-value=60 Score=27.67 Aligned_cols=19 Identities=32% Similarity=0.917 Sum_probs=13.9
Q ss_pred ceeEEEEEEece---EEEEEEe
Q 044308 93 SRYRVVYRLVNS---IYVLGIT 111 (645)
Q Consensus 93 ~~yrv~Yrlvn~---iyvl~vt 111 (645)
+.|||+|.+-++ |+|+.|-
T Consensus 58 g~YRiiy~i~d~~~~I~Vi~IG 79 (95)
T 4fxi_A 58 SGYRLVYQVIDEKVVVFVISVG 79 (95)
T ss_dssp SCEEEEEEEEGGGTEEEEEEEE
T ss_pred CCeEEEEEEECCEEEEEEEEEE
Confidence 569999999887 5555553
No 21
>3g5o_B Uncharacterized protein RV2866; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=20.58 E-value=1.1e+02 Score=25.84 Aligned_cols=28 Identities=21% Similarity=0.539 Sum_probs=18.1
Q ss_pred ccceeEEeeeceeEEEEEEece---EEEEEEe
Q 044308 83 SSGQLIVGVESRYRVVYRLVNS---IYVLGIT 111 (645)
Q Consensus 83 ~sG~~vvgv~~~yrv~Yrlvn~---iyvl~vt 111 (645)
.+|.-.+=| +.|||+|++-+. |+|+.|-
T Consensus 64 ~~g~~r~Ri-g~yRiIY~i~~~~~~I~vv~Ig 94 (102)
T 3g5o_B 64 LAGTFSARR-GTYRLLYRIDDEHTTVVILRVD 94 (102)
T ss_dssp GTTCEEEEC-SSEEEEEEEETTTTEEEEEEEE
T ss_pred CceEEEEEe-CCEEEEEEEeCCeEEEEEEEEe
Confidence 455333334 589999999876 5566555
No 22
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=20.03 E-value=4.4e+02 Score=30.18 Aligned_cols=76 Identities=24% Similarity=0.348 Sum_probs=42.3
Q ss_pred CceEEEEEEEEeCCCCCCCccceEEEeecCCCCCccccccccccccccceeeEEccCCCCCCCCceEEEEeecCCCCCCC
Q 044308 516 GTLLSVMVQYVSNPDLPMPLNDVTFSLKLPVDPTLLKVSPKAVLNRSDRELKWIVPEIPVKGAPGKLRVRMPVDSSEEDG 595 (645)
Q Consensus 516 ~tlt~V~VdY~yNP~lp~PLtnVq~iL~VPvd~tlLqs~P~A~WN~eerrl~WkLPdIs~~gg~G~LrAr~~~~sgpad~ 595 (645)
+..+.|.|.. .|| ||.||+|..|.| ...+++ ++....++++|. +-++++.++.+..--
T Consensus 607 ~~~l~v~v~f-~NP-L~~~L~~c~~~v---EG~GL~-----------~~~~~~~~~~v~---pg~~~~~~~~~~P~~--- 664 (692)
T 1vjj_A 607 RKPVNVQMLF-SNP-LDEPVRDCVLMV---EGSGLL-----------LGNLKIDVPTLG---PKERSRVRFDILPSR--- 664 (692)
T ss_dssp TSCEEEEEEE-ECC-SSSCBCSEEEEE---ECTTTS-----------SSCEEEEECCBC---TTCEEEEEEEECCCS---
T ss_pred CCeEEEEEEE-ECC-CCCcccceEEEE---ECCCCC-----------CCceEEEcCccC---CCCEEEEEEEEEecc---
Confidence 3334444444 343 778888888887 222332 234566778885 234677776655221
Q ss_pred CCccceEEEEEEeecCCccccce
Q 044308 596 GEEIDVVCHVKFASQGMLSLSGV 618 (645)
Q Consensus 596 ps~P~~~~aVQFsseGs~TLSGV 618 (645)
..+.. +.|.|+|. -|+.|
T Consensus 665 -~G~r~-L~a~f~s~---~l~~v 682 (692)
T 1vjj_A 665 -SGTKQ-LLADFSCN---KFPAI 682 (692)
T ss_dssp -CEEEE-EEEEEECS---SSTTE
T ss_pred -ccceE-EEEEEECC---cccCc
Confidence 22333 78888877 44544
Done!