BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044309
(259 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q46|A Chain A, Crystal Structure Of The Eif2 Alpha Subunit From
Saccharomyces Cerevisia
Length = 175
Score = 181 bits (459), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 88/146 (60%), Positives = 105/146 (71%)
Query: 77 CRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKV 136
CR YE +YPE+D VM+ V+ IA+MGAYV LLEY+NIEGMIL SE +V
Sbjct: 5 CRFYENKYPEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRV 64
Query: 137 GRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEE 196
G+ + +VLRVDKEKGYIDLSKRRVS EDI CEE+Y KSK VHSI+R+ AE I LEE
Sbjct: 65 GKNDVAVVLRVDKEKGYIDLSKRRVSSEDIIKCEEKYQKSKTVHSILRYCAEKFQIPLEE 124
Query: 197 LYVNIGWPLYWKYGHAFEAFKIIVTD 222
LY I WPL K+GHA+EAFK+ + D
Sbjct: 125 LYKTIAWPLSRKFGHAYEAFKLSIID 150
>pdb|2A19|A Chain A, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A1A|A Chain A, Pkr Kinase Domain-Eif2alpha Complex
Length = 175
Score = 180 bits (457), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 88/146 (60%), Positives = 105/146 (71%)
Query: 77 CRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKV 136
CR YE +YPE+D VM+ V+ IA+MGAYV LLEY+NIEGMIL SE +V
Sbjct: 5 CRFYENKYPEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRV 64
Query: 137 GRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEE 196
G+ + +VLRVDKEKGYIDLSKRRVS EDI CEE+Y KSK VHSI+R+ AE I LEE
Sbjct: 65 GKNDVAVVLRVDKEKGYIDLSKRRVSSEDIIKCEEKYQKSKTVHSILRYCAEKFQIPLEE 124
Query: 197 LYVNIGWPLYWKYGHAFEAFKIIVTD 222
LY I WPL K+GHA+EAFK+ + D
Sbjct: 125 LYKTIAWPLSRKFGHAYEAFKLSIID 150
>pdb|1Q8K|A Chain A, Solution Structure Of Alpha Subunit Of Human Eif2
Length = 308
Score = 152 bits (383), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/164 (50%), Positives = 107/164 (65%), Gaps = 9/164 (5%)
Query: 75 LECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXX 134
+ CR Y+ ++PEV+ VM+ V++I +MGAYVSLLEYNNIEGMI SE
Sbjct: 1 MSCRFYQHKFPEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLI 60
Query: 135 KVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI-- 192
++GR E V V+RVDKEKGYIDLSKRRVS E+ CE+++ KSK V+SI+RHVAE L
Sbjct: 61 RIGRNECVKVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTK 120
Query: 193 --DLEELYVNIGWPLYWKYGH----AFEAFKIIVTDPDSVLNSL 230
LE L+ W KY A++AFK V+DP S+L+SL
Sbjct: 121 DEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-SILDSL 163
>pdb|1KL9|A Chain A, Crystal Structure Of The N-Terminal Segment Of Human
Eukaryotic Initiation Factor 2alpha
Length = 182
Score = 143 bits (360), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/180 (48%), Positives = 114/180 (63%), Gaps = 14/180 (7%)
Query: 73 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXX 132
P L CR Y+ ++PEV+ V + V++IA+ GAYVSLLEYNNIEG IL SE
Sbjct: 1 PGLSCRFYQHKFPEVEDVVXVNVRSIAEXGAYVSLLEYNNIEGXILLSELSRRRIRSINK 60
Query: 133 XXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI 192
++GR E V+V+RVDKEKGYIDLSKRRVS E+ CE+++ KSK V+SI+RHVAE L
Sbjct: 61 LIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEY 120
Query: 193 ----DLEELYVNIGWPLYWKYGH----AFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEV 244
LE L+ W KY A++AFK V+DP S+L+SL ++ D +EV
Sbjct: 121 TKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-SILDSL-----DLNEDEREV 174
>pdb|3AEV|A Chain A, Crystal Structure Of AEIF2ALPHA-Adim2p-Rrna Complex From
Pyrococcus Horikoshii Ot3
Length = 275
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 72/146 (49%)
Query: 84 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVM 143
YPE V+ VK I + GA++ L EY E + SE K G+
Sbjct: 8 YPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAK 67
Query: 144 VLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGW 203
V+RVD KG+IDLS RRV+++ +A + + +++ +++R AE LG D E + +
Sbjct: 68 VIRVDPRKGHIDLSLRRVTQQQRKAKLQEFKRAQKAENLLRLAAEKLGKDFEAAWREVWV 127
Query: 204 PLYWKYGHAFEAFKIIVTDPDSVLNS 229
PL ++G + AF+ D VL
Sbjct: 128 PLEEEWGEVYAAFEDAAKDGIEVLKG 153
>pdb|1YZ6|A Chain A, Crystal Structure Of Intact Alpha Subunit Of Aif2 From
Pyrococcus Abyssi
Length = 274
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 72/146 (49%)
Query: 84 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVM 143
YPE V+ VK I + GA++ L EY E + SE K G+
Sbjct: 7 YPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAK 66
Query: 144 VLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGW 203
V+RVD KG+IDLS RRV+++ +A + + +++ ++++ AE LG D E + +
Sbjct: 67 VIRVDPRKGHIDLSLRRVTQQQRKAKLQEFKRAQKAENLLKLAAEKLGKDFETAWREVWV 126
Query: 204 PLYWKYGHAFEAFKIIVTDPDSVLNS 229
PL ++G + AF+ D VL
Sbjct: 127 PLEEEWGEVYAAFEDAAKDGIDVLKG 152
>pdb|2AHO|B Chain B, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|3CW2|C Chain C, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|D Chain D, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|G Chain G, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|H Chain H, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3V11|B Chain B, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 266
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 74/146 (50%)
Query: 82 ARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEP 141
++ P ++ VK + D G+YVSL EY ++ + +SE K R
Sbjct: 6 SKLPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVI 65
Query: 142 VMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNI 201
V V+RVD+ KG +D+S ++V++++ + ++ K + + I+ V++ L + ++ + +
Sbjct: 66 VKVIRVDRRKGTVDVSLKKVTDDERRKKNLQWKKIQRLDKILELVSQKLKLSEKDAWEQV 125
Query: 202 GWPLYWKYGHAFEAFKIIVTDPDSVL 227
W L KYG A + V + + +L
Sbjct: 126 AWKLEAKYGDPITAIEKAVKEGEKIL 151
>pdb|1LUZ|A Chain A, Crystal Structure Of The K3l Protein From Vaccinia Virus
(Wisconsin Strain)
pdb|1LUZ|B Chain B, Crystal Structure Of The K3l Protein From Vaccinia Virus
(Wisconsin Strain)
Length = 88
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 100 DMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKR 159
D Y+ L +Y + E ++ S VG+ V V+RVD KGYID++ +
Sbjct: 23 DYALYIYLFDYPHFEAILAESVKXHXDRYVEYRDKLVGKTVKVKVIRVDYTKGYIDVNYK 82
Query: 160 R 160
R
Sbjct: 83 R 83
>pdb|1YZ7|A Chain A, Crystal Structure Of A C-Terminal Segment Of The Alpha
Subunit Of Aif2 From Pyrococcus Abyssi
Length = 188
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 171 ERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYWKYGHAFEAFKIIVTDPDSVLNS 229
+ + +++ ++++ AE LG D E + + PL ++G + AF+ D VL
Sbjct: 8 QEFKRAQKAENLLKLAAEKLGKDFETAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKG 66
>pdb|3CDI|A Chain A, Crystal Structure Of E. Coli Pnpase
Length = 723
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 94 QVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGY 153
+V I D GA+V++ EG++ S+ ++G+ PV VL VD++ G
Sbjct: 634 KVTRIVDFGAFVAI--GGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ-GR 690
Query: 154 IDLSKRRVSEE 164
I LS + +E+
Sbjct: 691 IRLSIKEATEQ 701
>pdb|3EPS|A Chain A, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE From E. Coli
pdb|3EPS|B Chain B, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE From E. Coli
Length = 578
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 174 NKSKLVHSIMRHVAETLGI-DLEELYVNIGWPLYWKYGHAFEAFKIIV 220
NKS+ +H I+RH+ ETLG +L + ++ + L+++ A+ K+I
Sbjct: 168 NKSRDIHYIIRHLTETLGPENLSKSHLQVANELFYRNKAAWLVGKLIT 215
>pdb|3LC6|A Chain A, The Alternative Conformation Structure Of Isocitrate
Dehydrogenase Kinase/phosphatase From E. Coli
pdb|3LC6|B Chain B, The Alternative Conformation Structure Of Isocitrate
Dehydrogenase Kinase/phosphatase From E. Coli
pdb|3LCB|A Chain A, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|3LCB|B Chain B, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli
Length = 578
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 174 NKSKLVHSIMRHVAETLGI-DLEELYVNIGWPLYWKYGHAFEAFKIIV 220
NKS+ +H I+RH+ ETLG +L + ++ + L+++ A+ K+I
Sbjct: 168 NKSRDIHYIIRHLTETLGPENLSKSHLQVANELFYRNKAAWLVGKLIT 215
>pdb|2K4K|A Chain A, Solution Structure Of Gsp13 From Bacillus Subtilis
Length = 130
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 86 EVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVL 145
EV +V + GA+V+L E +G++ SE VG V VL
Sbjct: 6 EVGSVYTGKVTGLQAYGAFVALDE--ETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVL 63
Query: 146 RVDKEKGYIDLSKR 159
VD+EKG I LS R
Sbjct: 64 AVDEEKGKISLSIR 77
>pdb|3LMS|A Chain A, Structure Of Human Activated Thrombin-Activatable
Fibrinolys Inhibitor, Tafia, In Complex With
Tick-Derived Funnelin Inh Tci
Length = 309
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 56 NAKAKKLSEQPIMASHSPNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYN 111
N +K E+ +S C +Y PEV +NI + AY+S+ Y+
Sbjct: 144 NFASKHWCEEGASSSSCSETYCGLYPESEPEVKAVASFLRRNINQIKAYISMHSYS 199
>pdb|3D66|A Chain A, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3D66|B Chain B, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3D66|C Chain C, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|3D67|A Chain A, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi) In Complex With
2-Guanidino-Ethyl-Mercaptosuccinic Acid (Gemsa)
pdb|3D67|B Chain B, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi) In Complex With
2-Guanidino-Ethyl-Mercaptosuccinic Acid (Gemsa)
pdb|3D67|C Chain C, Crystal Structure Of Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi) In Complex With
2-Guanidino-Ethyl-Mercaptosuccinic Acid (Gemsa)
Length = 424
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 56 NAKAKKLSEQPIMASHSPNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYN 111
N +K E+ +S C +Y PEV +NI + AY+S+ Y+
Sbjct: 259 NFASKHWCEEGASSSSCSETYCGLYPESEPEVKAVASFLRRNINQIKAYISMHSYS 314
>pdb|3D68|A Chain A, Crystal Structure Of A T325i/t329i/h333y/h335q Mutant Of
Thrombin- Activatable Fibrinolysis Inhibitor (tafi-iiyq)
pdb|3D68|B Chain B, Crystal Structure Of A T325i/t329i/h333y/h335q Mutant Of
Thrombin- Activatable Fibrinolysis Inhibitor (tafi-iiyq)
pdb|3D68|C Chain C, Crystal Structure Of A T325i/t329i/h333y/h335q Mutant Of
Thrombin- Activatable Fibrinolysis Inhibitor (tafi-iiyq)
Length = 424
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 56 NAKAKKLSEQPIMASHSPNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYN 111
N +K E+ +S C +Y PEV +NI + AY+S+ Y+
Sbjct: 259 NFASKHWCEEGASSSSCSETYCGLYPESEPEVKAVASFLRRNINQIKAYISMHSYS 314
>pdb|1SRO|A Chain A, S1 Rna Binding Domain, Nmr, 20 Structures
Length = 76
Score = 28.1 bits (61), Expect = 5.1, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 86 EVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVL 145
EV +V I D GA+V++ EG++ S+ ++G+ PV VL
Sbjct: 4 EVGRVYTGKVTRIVDFGAFVAI--GGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVL 61
Query: 146 RVDKEKGYIDLS 157
VD++ G I LS
Sbjct: 62 EVDRQ-GRIRLS 72
>pdb|2I6L|A Chain A, Crystal Structure Of Human Mitogen Activated Protein
Kinase 6 (Mapk6)
pdb|2I6L|B Chain B, Crystal Structure Of Human Mitogen Activated Protein
Kinase 6 (Mapk6)
Length = 320
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 16/52 (30%)
Query: 217 KIIVTDPDSVLNSLTREVKEI---------------GPDGQEVTKVVPAVTE 253
KI++TDP SV ++L RE+K I GP G ++T V ++TE
Sbjct: 43 KIVLTDPQSVKHAL-REIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGSLTE 93
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 463
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 171 ERYNKSKLVHSIMRHVAETLGIDLEELY 198
E YN + VH ++ H ET ID E LY
Sbjct: 181 EPYNATLSVHQLVEHSDETFCIDNEALY 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,112,177
Number of Sequences: 62578
Number of extensions: 254817
Number of successful extensions: 796
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 779
Number of HSP's gapped (non-prelim): 22
length of query: 259
length of database: 14,973,337
effective HSP length: 97
effective length of query: 162
effective length of database: 8,903,271
effective search space: 1442329902
effective search space used: 1442329902
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)