BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044309
(259 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P56286|IF2A_SCHPO Eukaryotic translation initiation factor 2 subunit alpha
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tif211 PE=1 SV=1
Length = 306
Score = 224 bits (572), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 104/154 (67%), Positives = 124/154 (80%)
Query: 77 CRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKV 136
CRMYE R+PEVD V++ V+ I +MGAYV LLEY+NIEGM+L SELSRRRIRSV I+V
Sbjct: 6 CRMYENRFPEVDELVVVNVRQIQEMGAYVKLLEYDNIEGMVLLSELSRRRIRSVQKHIRV 65
Query: 137 GRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEE 196
GR E V+VLRVDKEKGYIDLSKRRVS ED+ CEER+NKSK VHSIMRH+AE + LE
Sbjct: 66 GRNEVVVVLRVDKEKGYIDLSKRRVSPEDVVKCEERFNKSKAVHSIMRHIAEKHNVPLET 125
Query: 197 LYVNIGWPLYWKYGHAFEAFKIIVTDPDSVLNSL 230
+Y IGWPLY KYGHA++AFK+ +++PD V L
Sbjct: 126 MYTTIGWPLYRKYGHAYDAFKLAISNPDHVFEGL 159
>sp|P20459|IF2A_YEAST Eukaryotic translation initiation factor 2 subunit alpha
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SUI2 PE=1 SV=1
Length = 304
Score = 207 bits (528), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 98/146 (67%), Positives = 116/146 (79%)
Query: 77 CRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKV 136
CR YE +YPE+D VM+ V+ IA+MGAYV LLEY+NIEGMIL SELSRRRIRS+ LI+V
Sbjct: 6 CRFYENKYPEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRV 65
Query: 137 GRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEE 196
G+ + +VLRVDKEKGYIDLSKRRVS EDI CEE+Y KSK VHSI+R+ AE I LEE
Sbjct: 66 GKNDVAVVLRVDKEKGYIDLSKRRVSSEDIIKCEEKYQKSKTVHSILRYCAEKFQIPLEE 125
Query: 197 LYVNIGWPLYWKYGHAFEAFKIIVTD 222
LY I WPL K+GHA+EAFK+ + D
Sbjct: 126 LYKTIAWPLSRKFGHAYEAFKLSIID 151
>sp|Q869N9|IF2A_DICDI Eukaryotic translation initiation factor 2 subunit 1
OS=Dictyostelium discoideum GN=eif2s1 PE=1 SV=1
Length = 341
Score = 189 bits (481), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/160 (58%), Positives = 123/160 (76%), Gaps = 6/160 (3%)
Query: 76 ECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIK 135
+CRMYE +YPE + VM+++++I DMG YVSLLEYNNIEGMIL SE+SRRRIRS++ L++
Sbjct: 6 DCRMYEKKYPEENELVMVRIESIGDMGVYVSLLEYNNIEGMILLSEISRRRIRSINKLVR 65
Query: 136 VGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLG---- 191
VG+ E V+V+RVDK+KGYIDLSKRRV+ E+ CEER++KSK VH I+R+VA L
Sbjct: 66 VGKTEAVVVVRVDKDKGYIDLSKRRVTPEEYAQCEERFHKSKAVHGIVRYVATKLSTEDN 125
Query: 192 -IDLEELYVNIGWPLYWKYGHAFEAFKIIVTDPDSVLNSL 230
+ + LY WPLY KYGHA+EAFK+ +T+P SV N
Sbjct: 126 VVKTKHLYTKFVWPLYTKYGHAYEAFKLSITEP-SVFNGF 164
>sp|Q6GL89|IF2A_XENTR Eukaryotic translation initiation factor 2 subunit 1 OS=Xenopus
tropicalis GN=eif2s1 PE=2 SV=1
Length = 315
Score = 187 bits (475), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 98/166 (59%), Positives = 122/166 (73%), Gaps = 9/166 (5%)
Query: 73 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSS 132
P L CR Y+ ++PEVD VM+ V++IA+MGAYVSLLEYNNIEGMIL SELSRRRIRS++
Sbjct: 2 PALSCRFYQHKFPEVDDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINK 61
Query: 133 LIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI 192
LI++GR E V+V+RVDK+KGYIDLSKRRVS E+ CE+++ KSK V+SI+RHVAE L
Sbjct: 62 LIRIGRNECVVVIRVDKDKGYIDLSKRRVSPEEALKCEDKFTKSKTVYSILRHVAEVLEY 121
Query: 193 ----DLEELYVNIGWPLYWKYGH----AFEAFKIIVTDPDSVLNSL 230
LE LY W KY A++AFK V+DPD VL+ L
Sbjct: 122 TKDEQLESLYQRTAWVFDEKYKKPGYGAYDAFKHAVSDPD-VLDGL 166
>sp|P41374|IF2A_DROME Eukaryotic translation initiation factor 2 subunit 1 OS=Drosophila
melanogaster GN=eIF-2alpha PE=2 SV=1
Length = 341
Score = 186 bits (473), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 126/172 (73%), Gaps = 10/172 (5%)
Query: 75 LECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLI 134
L R Y RYPE++ VM+ V +IA+MGAYV LLEYNNIEGMIL SELSRRRIRS++ LI
Sbjct: 3 LTSRFYNERYPEIEDVVMVNVLSIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLI 62
Query: 135 KVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGID- 193
+VG+ EPV+V+RVDKEKGYIDLSKRRVS ED++ C ER+ K+K ++S++RHVA+ LG +
Sbjct: 63 RVGKTEPVVVIRVDKEKGYIDLSKRRVSPEDVEKCTERFAKAKAINSLLRHVADILGFEG 122
Query: 194 ---LEELYVNIGWPLYWKYGH---AFEAFKIIVTDPDSVLN--SLTREVKEI 237
LE+LY W KY + A++ FK VTDP +V + +L E KE+
Sbjct: 123 NEKLEDLYQKTAWHFEKKYNNKTVAYDIFKQSVTDP-TVFDECNLEPETKEV 173
>sp|Q7ZTK4|IF2A_XENLA Eukaryotic translation initiation factor 2 subunit 1 OS=Xenopus
laevis GN=eif2s1 PE=2 SV=1
Length = 315
Score = 186 bits (472), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 95/166 (57%), Positives = 122/166 (73%), Gaps = 9/166 (5%)
Query: 73 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSS 132
P L CR Y+ ++PEVD VM+ V++IA+MGAYVSLLEYNNIEGMIL SELSRRRIRS++
Sbjct: 2 PGLNCRFYQHKFPEVDDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINK 61
Query: 133 LIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI 192
LI++GR E V+V+RVDK+KGYIDLSKRRVS E+ CE+++ KSK V+SI+RHVAE L
Sbjct: 62 LIRIGRNECVVVIRVDKDKGYIDLSKRRVSPEEALKCEDKFTKSKTVYSILRHVAEVLDY 121
Query: 193 ----DLEELYVNIGWPLYWKYGH----AFEAFKIIVTDPDSVLNSL 230
L+ L+ W KY A++AFK V+DPD +L+ L
Sbjct: 122 TKDEQLDSLFQRTAWVFDEKYKKPGYGAYDAFKNAVSDPD-ILDGL 166
>sp|Q5R493|IF2A_PONAB Eukaryotic translation initiation factor 2 subunit 1 OS=Pongo
abelii GN=EIF2S1 PE=2 SV=1
Length = 315
Score = 186 bits (472), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/166 (58%), Positives = 123/166 (74%), Gaps = 9/166 (5%)
Query: 73 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSS 132
P L CR Y+ ++PEV+ VM+ V++IA+MGAYVSLLEYNNIEGMIL SELSRRRIRS++
Sbjct: 2 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINK 61
Query: 133 LIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI 192
LI++GR E V+V+RVDKEKGYIDLSKRRVS E+ CE+++ KSK V+SI+RHVAE L
Sbjct: 62 LIRIGRNERVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEY 121
Query: 193 ----DLEELYVNIGWPLYWKYGH----AFEAFKIIVTDPDSVLNSL 230
LE L+ W KY A++AFK V+DP S+L+SL
Sbjct: 122 TKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-SILDSL 166
>sp|P68101|IF2A_RAT Eukaryotic translation initiation factor 2 subunit 1 OS=Rattus
norvegicus GN=Eif2s1 PE=1 SV=2
Length = 315
Score = 186 bits (471), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/166 (58%), Positives = 123/166 (74%), Gaps = 9/166 (5%)
Query: 73 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSS 132
P L CR Y+ ++PEV+ VM+ V++IA+MGAYVSLLEYNNIEGMIL SELSRRRIRS++
Sbjct: 2 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINK 61
Query: 133 LIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI 192
LI++GR E V+V+RVDKEKGYIDLSKRRVS E+ CE+++ KSK V+SI+RHVAE L
Sbjct: 62 LIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEY 121
Query: 193 ----DLEELYVNIGWPLYWKYGH----AFEAFKIIVTDPDSVLNSL 230
LE L+ W KY A++AFK V+DP S+L+SL
Sbjct: 122 TKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-SILDSL 166
>sp|Q6ZWX6|IF2A_MOUSE Eukaryotic translation initiation factor 2 subunit 1 OS=Mus
musculus GN=Eif2s1 PE=1 SV=3
Length = 315
Score = 186 bits (471), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/166 (58%), Positives = 123/166 (74%), Gaps = 9/166 (5%)
Query: 73 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSS 132
P L CR Y+ ++PEV+ VM+ V++IA+MGAYVSLLEYNNIEGMIL SELSRRRIRS++
Sbjct: 2 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINK 61
Query: 133 LIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI 192
LI++GR E V+V+RVDKEKGYIDLSKRRVS E+ CE+++ KSK V+SI+RHVAE L
Sbjct: 62 LIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEY 121
Query: 193 ----DLEELYVNIGWPLYWKYGH----AFEAFKIIVTDPDSVLNSL 230
LE L+ W KY A++AFK V+DP S+L+SL
Sbjct: 122 TKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-SILDSL 166
>sp|P68102|IF2A_BOVIN Eukaryotic translation initiation factor 2 subunit 1 OS=Bos taurus
GN=EIF2S1 PE=2 SV=2
Length = 315
Score = 186 bits (471), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/166 (58%), Positives = 123/166 (74%), Gaps = 9/166 (5%)
Query: 73 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSS 132
P L CR Y+ ++PEV+ VM+ V++IA+MGAYVSLLEYNNIEGMIL SELSRRRIRS++
Sbjct: 2 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINK 61
Query: 133 LIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI 192
LI++GR E V+V+RVDKEKGYIDLSKRRVS E+ CE+++ KSK V+SI+RHVAE L
Sbjct: 62 LIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEY 121
Query: 193 ----DLEELYVNIGWPLYWKYGH----AFEAFKIIVTDPDSVLNSL 230
LE L+ W KY A++AFK V+DP S+L+SL
Sbjct: 122 TKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-SILDSL 166
>sp|P05198|IF2A_HUMAN Eukaryotic translation initiation factor 2 subunit 1 OS=Homo
sapiens GN=EIF2S1 PE=1 SV=3
Length = 315
Score = 185 bits (470), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/166 (58%), Positives = 123/166 (74%), Gaps = 9/166 (5%)
Query: 73 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSS 132
P L CR Y+ ++PEV+ VM+ V++IA+MGAYVSLLEYNNIEGMIL SELSRRRIRS++
Sbjct: 2 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINK 61
Query: 133 LIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI 192
LI++GR E V+V+RVDKEKGYIDLSKRRVS E+ CE+++ KSK V+SI+RHVAE L
Sbjct: 62 LIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEY 121
Query: 193 ----DLEELYVNIGWPLYWKYGH----AFEAFKIIVTDPDSVLNSL 230
LE L+ W KY A++AFK V+DP S+L+SL
Sbjct: 122 TKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-SILDSL 166
>sp|Q5ZLX2|IF2A_CHICK Eukaryotic translation initiation factor 2 subunit 1 OS=Gallus
gallus GN=EIF2S1 PE=2 SV=2
Length = 315
Score = 184 bits (467), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 96/166 (57%), Positives = 123/166 (74%), Gaps = 9/166 (5%)
Query: 73 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSS 132
P L CR Y+ ++PEV+ VM+ V++IA+MGAYVSLLEYNNIEGMIL SELSRRRIRS++
Sbjct: 2 PALSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINK 61
Query: 133 LIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI 192
LI++GR E V+V+RVDKEKGYIDLSKRRVS E+ CE+++ KSK V+SI+RHVAE L
Sbjct: 62 LIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEY 121
Query: 193 ----DLEELYVNIGWPLYWKYGH----AFEAFKIIVTDPDSVLNSL 230
LE L+ W KY A++AFK V+DP ++L+SL
Sbjct: 122 TKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-AILDSL 166
>sp|P20460|IF2A_PIG Eukaryotic translation initiation factor 2 subunit 1 (Fragment)
OS=Sus scrofa GN=EIF2S1 PE=1 SV=2
Length = 70
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 57/66 (86%)
Query: 73 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSS 132
P L CR Y+ ++PEV+ VM+ V++IA+MGAYVSLLEYNNIEGMIL SELSRRRIRS++
Sbjct: 2 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINK 61
Query: 133 LIKVGR 138
LI++GR
Sbjct: 62 LIRIGR 67
>sp|Q57581|IF2A_METJA Translation initiation factor 2 subunit alpha OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=eif2a PE=3 SV=1
Length = 266
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 87/147 (59%)
Query: 84 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVM 143
+PE V+ VK++ GA+V LLEY EGMI SE++ ++++ +KVG+
Sbjct: 8 FPEEGDIVIGTVKDVKPYGAFVELLEYPGKEGMIHISEVTSGWVKNIRDHVKVGQRVVAK 67
Query: 144 VLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGW 203
VLRVD+ KG+IDLS +RV+E+ +A + + + + ++ AE LG LEE + +G+
Sbjct: 68 VLRVDERKGHIDLSLKRVTEQQKRAKVQEWKRFQRASKMLERAAEKLGKSLEEAWEEVGY 127
Query: 204 PLYWKYGHAFEAFKIIVTDPDSVLNSL 230
L ++G + AF+ +V + VL+ L
Sbjct: 128 LLEDEFGELYNAFETMVIEGKEVLDDL 154
>sp|Q973G0|IF2A_SULTO Translation initiation factor 2 subunit alpha OS=Sulfolobus
tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 /
7) GN=eif2a PE=3 SV=1
Length = 263
Score = 88.6 bits (218), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 83/135 (61%)
Query: 95 VKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYI 154
VK I D G+YV+L EY N++ + +SE+S R ++++ +IK GR V V+RVDK KG I
Sbjct: 19 VKQIFDYGSYVTLDEYGNLQAFLPWSEISSRWVKNIRDVIKEGRKIVVKVIRVDKRKGTI 78
Query: 155 DLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYWKYGHAFE 214
D+S ++V+E++ + ++ K + V I+ V++ + +E + + W L KYG A++
Sbjct: 79 DVSLKKVTEDEKRKKMSQWKKIQKVDKILEIVSQKINKTEKEGWEQVAWKLEDKYGDAYD 138
Query: 215 AFKIIVTDPDSVLNS 229
A V + DS+L +
Sbjct: 139 ALVKAVKEGDSILKN 153
>sp|Q5JE49|IF2A_PYRKO Translation initiation factor 2 subunit alpha OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=eif2a PE=3 SV=1
Length = 275
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 83/147 (56%)
Query: 84 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVM 143
YPE V+ VKNI GA+++L EY EG + SE++ ++++ +K G+
Sbjct: 8 YPEEGEFVVATVKNIHPYGAFLTLDEYPGKEGFMHISEVAPTWVKNIRDYLKEGQKIVAK 67
Query: 144 VLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGW 203
V+RVD EKG+IDLS +RV+++ +A + Y +++ ++++ AE LG D E + +
Sbjct: 68 VIRVDPEKGHIDLSLKRVNQQQRKAKLQEYKRAQKAENLLKMAAEKLGKDFETAWREVWV 127
Query: 204 PLYWKYGHAFEAFKIIVTDPDSVLNSL 230
PL +YG + AF+ + VL L
Sbjct: 128 PLEEEYGEVYAAFEDAAQNGMDVLKGL 154
>sp|C5A4Z9|IF2A_THEGJ Translation initiation factor 2 subunit alpha OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=eif2a PE=3 SV=1
Length = 273
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 83/147 (56%)
Query: 84 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVM 143
YPE V+ VKNI GA++ L EY EG + SE++ ++++ +K G+ V
Sbjct: 8 YPEEGEFVVATVKNIHPYGAFLILDEYPGKEGFMHISEVAPTWVKNIRDYVKEGQKVVVK 67
Query: 144 VLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGW 203
V+RVD EKG+IDLS +RV+++ +A + Y +++ ++++ AE +G D E + +
Sbjct: 68 VIRVDPEKGHIDLSLKRVNQQQRKAKLQEYKRAQKAENLLKMAAEKIGKDFETAWREVWV 127
Query: 204 PLYWKYGHAFEAFKIIVTDPDSVLNSL 230
PL +YG + AF+ + VL L
Sbjct: 128 PLEEEYGEVYAAFEDAAQNGIEVLKGL 154
>sp|O58655|IF2A_PYRHO Translation initiation factor 2 subunit alpha OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /
NBRC 100139 / OT-3) GN=eif2a PE=1 SV=1
Length = 275
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 79/146 (54%)
Query: 84 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVM 143
YPE V+ VK I + GA++ L EY E + SE++ +R++ +K G+
Sbjct: 8 YPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAK 67
Query: 144 VLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGW 203
V+RVD KG+IDLS RRV+++ +A + + +++ +++R AE LG D E + +
Sbjct: 68 VIRVDPRKGHIDLSLRRVTQQQRKAKLQEFKRAQKAENLLRLAAEKLGKDFEAAWREVWV 127
Query: 204 PLYWKYGHAFEAFKIIVTDPDSVLNS 229
PL ++G + AF+ D VL
Sbjct: 128 PLEEEWGEVYAAFEDAAKDGIEVLKG 153
>sp|B6YT35|IF2A_THEON Translation initiation factor 2 subunit alpha OS=Thermococcus
onnurineus (strain NA1) GN=eif2a PE=3 SV=1
Length = 275
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 82/150 (54%)
Query: 84 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVM 143
YPE V+ VK+I GA++ L EY EG + SE++ ++++ +K G+
Sbjct: 8 YPEEGEFVIATVKSIHPYGAFLKLDEYPGKEGFMHISEVASTWVKNIRDYVKEGQKVVAK 67
Query: 144 VLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGW 203
V+RVD KG+IDLS +RV+++ +A + Y +++ ++++ AE LG D E + +
Sbjct: 68 VIRVDPNKGHIDLSLKRVNQQQRKAKLQEYKRAQKAENLLKMAAEKLGKDFEMAWQEVWV 127
Query: 204 PLYWKYGHAFEAFKIIVTDPDSVLNSLTRE 233
PL +YG + AF+ + VL + E
Sbjct: 128 PLEEEYGEVYAAFEDAAQNGIEVLKGIIPE 157
>sp|Q8U1R5|IF2A_PYRFU Translation initiation factor 2 subunit alpha OS=Pyrococcus
furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=eif2a PE=3 SV=1
Length = 275
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 79/134 (58%)
Query: 84 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVM 143
YPE V+ VK + + GA++ L EY EG + SE++ ++++ ++ G+
Sbjct: 8 YPEEGELVVATVKRVHNYGAFLDLDEYPGKEGFMHISEVASTWVKNIRDYLREGQKVVAK 67
Query: 144 VLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGW 203
V+RVD +KG+IDLS RRV+++ +A + + +++ ++++ AE LG D EE + +
Sbjct: 68 VIRVDPKKGHIDLSLRRVTQQQRKAKLQEFKRAQKAENLLKLAAEKLGKDFEEAWREVWV 127
Query: 204 PLYWKYGHAFEAFK 217
PL ++G + AF+
Sbjct: 128 PLENEWGEVYAAFE 141
>sp|Q9V0E4|IF2A_PYRAB Translation initiation factor 2 subunit alpha OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=eif2a PE=1 SV=1
Length = 275
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 79/146 (54%)
Query: 84 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVM 143
YPE V+ VK I + GA++ L EY E + SE++ +R++ +K G+
Sbjct: 8 YPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAK 67
Query: 144 VLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGW 203
V+RVD KG+IDLS RRV+++ +A + + +++ ++++ AE LG D E + +
Sbjct: 68 VIRVDPRKGHIDLSLRRVTQQQRKAKLQEFKRAQKAENLLKLAAEKLGKDFETAWREVWV 127
Query: 204 PLYWKYGHAFEAFKIIVTDPDSVLNS 229
PL ++G + AF+ D VL
Sbjct: 128 PLEEEWGEVYAAFEDAAKDGIDVLKG 153
>sp|A2BN93|IF2A_HYPBU Translation initiation factor 2 subunit alpha OS=Hyperthermus
butylicus (strain DSM 5456 / JCM 9403) GN=eif2a PE=3
SV=1
Length = 267
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 81/144 (56%)
Query: 85 PEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMV 144
P+V V+ VK + D GAY++L EY +E + +SE++ R +RS+ ++K G+ V V
Sbjct: 9 PDVGELVVATVKEVYDYGAYLTLDEYGGLEAYLPWSEVASRWVRSIHDVVKPGQKIVVKV 68
Query: 145 LRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWP 204
+RV+K K +D+S +RV++ + + + +++ I+ VA+ LG LEE Y +G
Sbjct: 69 IRVNKRKKQVDVSLKRVTDSERRRKMMEWKRAQKAERILELVAQKLGKSLEEAYEAVGKK 128
Query: 205 LYWKYGHAFEAFKIIVTDPDSVLN 228
L YG AF+ +V + L
Sbjct: 129 LEDYYGELMAAFEEVVIRGEQALR 152
>sp|P83268|IF2A_RABIT Eukaryotic translation initiation factor 2 subunit 1 (Fragment)
OS=Oryctolagus cuniculus GN=EIF2S1 PE=1 SV=1
Length = 52
Score = 77.8 bits (190), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/52 (67%), Positives = 43/52 (82%)
Query: 73 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSR 124
P L CR Y+ ++PEV+ VM+ V++IA+MGAYVSLLEYNNIEG IL SELSR
Sbjct: 1 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGRILLSELSR 52
>sp|Q97Z79|IF2A_SULSO Translation initiation factor 2 subunit alpha OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=eif2a PE=1 SV=1
Length = 266
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 83/146 (56%)
Query: 82 ARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEP 141
++ P ++ VK + D G+YVSL EY ++ + +SE+S + ++++ ++K R
Sbjct: 6 SKLPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVI 65
Query: 142 VMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNI 201
V V+RVD+ KG +D+S ++V++++ + ++ K + + I+ V++ L + ++ + +
Sbjct: 66 VKVIRVDRRKGTVDVSLKKVTDDERRKKNLQWKKIQRLDKILELVSQKLKLSEKDAWEQV 125
Query: 202 GWPLYWKYGHAFEAFKIIVTDPDSVL 227
W L KYG A + V + + +L
Sbjct: 126 AWKLEAKYGDPITAIEKAVKEGEKIL 151
>sp|Q8TY86|IF2A_METKA Translation initiation factor 2 subunit alpha OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=eif2a PE=3 SV=1
Length = 267
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 80/147 (54%), Gaps = 2/147 (1%)
Query: 85 PEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMV 144
PE VM V+ + D GA+V+L EY ++G I SE++ ++++ +K G+ V
Sbjct: 9 PEEGEIVMATVERVEDHGAFVTLDEYPGVDGYIHISEVASGWVKNIRDYVKEGQKVVAKV 68
Query: 145 LRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWP 204
+RV+ ++ Y +LS R+V++ + + + + + ++ AE LG DL+E Y G+
Sbjct: 69 IRVNPKRKYANLSLRKVTDHQRKEKLKEWKREQRAEKLLEMAAEELGKDLDEAYEEAGYK 128
Query: 205 LYWKYGHAFEAFKIIVTD--PDSVLNS 229
L +YG ++A + + P+ +L +
Sbjct: 129 LIEEYGSLYDALERAAAEEGPEPLLKA 155
>sp|A3DM89|IF2A_STAMF Translation initiation factor 2 subunit alpha OS=Staphylothermus
marinus (strain ATCC 43588 / DSM 3639 / F1) GN=eif2a
PE=3 SV=1
Length = 267
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 77/143 (53%), Gaps = 1/143 (0%)
Query: 85 PEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMV 144
P V V+ VK I D GAYV+L EYN +E + +SE++ R +R++ +I+ + V V
Sbjct: 9 PNVGEYVIATVKEIFDYGAYVTLDEYNGLEAYLPWSEVASRWVRNIRDVIRENQKIVVKV 68
Query: 145 LRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWP 204
+RV++ + +D+S ++V E + + + + I+ VAE +G +E+ Y + W
Sbjct: 69 IRVNRRRKTVDVSLKKVPENEKRRKMLWWKRYLKASKIVELVAEKIGKSIEDAYREVVWK 128
Query: 205 LYWKYGHAFEAF-KIIVTDPDSV 226
L YG + ++ PD++
Sbjct: 129 LEDYYGDPLLGLEEAVIRGPDAL 151
>sp|Q9YF02|IF2A_AERPE Translation initiation factor 2 subunit alpha OS=Aeropyrum pernix
(strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138
/ K1) GN=eif2a PE=3 SV=3
Length = 277
Score = 64.3 bits (155), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 81/153 (52%), Gaps = 2/153 (1%)
Query: 70 SHSPNLECRMYEARYPEVDMA--VMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRI 127
S +E ++ + R P D+ V+ V+ + D GAY+ L EY + + +SE++ R +
Sbjct: 2 SEEGGVEVKLLKPRKPLPDVGEIVVGTVQEVHDYGAYLILDEYGGVRAFLPWSEIASRAV 61
Query: 128 RSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVA 187
R++ +++K + V V+RV K++G +D+S +RV + + + Y + +++ +A
Sbjct: 62 RNIHAVLKPRQKVVVKVIRVYKKRGQVDVSLKRVMDSEKKRKMMFYKRYLKAATLVELIA 121
Query: 188 ETLGIDLEELYVNIGWPLYWKYGHAFEAFKIIV 220
E LG ++E Y + W L YG + + V
Sbjct: 122 EKLGKSVDEAYREVLWKLEDAYGDPMKGLEAAV 154
>sp|O29723|IF2A_ARCFU Translation initiation factor 2 subunit alpha OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=eif2a PE=3 SV=1
Length = 267
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 1/133 (0%)
Query: 84 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVM 143
YP V+ VK + D GA+VSL EY EGM+ SE++ I+ + +K G+
Sbjct: 13 YPSKGEIVIGTVKRVLDFGAFVSLDEYEGREGMVHISEVASGWIKDIREHVKKGQKVICK 72
Query: 144 VLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGW 203
VL V+ ++G+IDLS + V+E + +++ + + E L ID +EL IG
Sbjct: 73 VLDVNPKRGHIDLSIKDVNERQRREKLQQWKNEMKAFKWLEIIGEKLNIDFKELE-KIGK 131
Query: 204 PLYWKYGHAFEAF 216
L +Y + AF
Sbjct: 132 KLMKEYDSVYSAF 144
>sp|C3NDP3|IF2A_SULIY Translation initiation factor 2 subunit alpha OS=Sulfolobus
islandicus (strain Y.G.57.14 / Yellowstone #1) GN=eif2a
PE=3 SV=1
Length = 266
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 83/146 (56%)
Query: 82 ARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEP 141
+R P ++ VK + D G+YV+L EY ++ + +SE+S + ++++ ++K R
Sbjct: 6 SRLPSEGEILIATVKQVFDYGSYVTLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVV 65
Query: 142 VMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNI 201
V V+RVD+ KG +D+S ++V++++ + ++ K + + I+ V++ L + ++ + +
Sbjct: 66 VKVIRVDRRKGTVDVSLKKVTDDERRKKNLQWKKIQRLDKILELVSQQLKLSEKDAWEQV 125
Query: 202 GWPLYWKYGHAFEAFKIIVTDPDSVL 227
W L KYG A + V + + +L
Sbjct: 126 AWKLEAKYGDPISAIERAVKEGEKIL 151
>sp|C3NI08|IF2A_SULIN Translation initiation factor 2 subunit alpha OS=Sulfolobus
islandicus (strain Y.N.15.51 / Yellowstone #2) GN=eif2a
PE=3 SV=1
Length = 266
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 83/146 (56%)
Query: 82 ARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEP 141
+R P ++ VK + D G+YV+L EY ++ + +SE+S + ++++ ++K R
Sbjct: 6 SRLPSEGEILIATVKQVFDYGSYVTLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVV 65
Query: 142 VMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNI 201
V V+RVD+ KG +D+S ++V++++ + ++ K + + I+ V++ L + ++ + +
Sbjct: 66 VKVIRVDRRKGTVDVSLKKVTDDERRKKNLQWKKIQRLDKILELVSQQLKLSEKDAWEQV 125
Query: 202 GWPLYWKYGHAFEAFKIIVTDPDSVL 227
W L KYG A + V + + +L
Sbjct: 126 AWKLEAKYGDPISAIERAVKEGEKIL 151
>sp|C3MYF1|IF2A_SULIM Translation initiation factor 2 subunit alpha OS=Sulfolobus
islandicus (strain M.14.25 / Kamchatka #1) GN=eif2a PE=3
SV=1
Length = 266
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 83/146 (56%)
Query: 82 ARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEP 141
+R P ++ VK + D G+YV+L EY ++ + +SE+S + ++++ ++K R
Sbjct: 6 SRLPSEGEILIATVKQVFDYGSYVTLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVV 65
Query: 142 VMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNI 201
V V+RVD+ KG +D+S ++V++++ + ++ K + + I+ V++ L + ++ + +
Sbjct: 66 VKVIRVDRRKGTVDVSLKKVTDDERRKKNLQWKKIQRLDKILELVSQQLKLSEKDAWEQV 125
Query: 202 GWPLYWKYGHAFEAFKIIVTDPDSVL 227
W L KYG A + V + + +L
Sbjct: 126 AWKLEAKYGDPISAIERAVKEGEKIL 151
>sp|C4KGP8|IF2A_SULIK Translation initiation factor 2 subunit alpha OS=Sulfolobus
islandicus (strain M.16.4 / Kamchatka #3) GN=eif2a PE=3
SV=1
Length = 266
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 83/146 (56%)
Query: 82 ARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEP 141
+R P ++ VK + D G+YV+L EY ++ + +SE+S + ++++ ++K R
Sbjct: 6 SRLPSEGEILIATVKQVFDYGSYVTLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVV 65
Query: 142 VMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNI 201
V V+RVD+ KG +D+S ++V++++ + ++ K + + I+ V++ L + ++ + +
Sbjct: 66 VKVIRVDRRKGTVDVSLKKVTDDERRKKNLQWKKIQRLDKILELVSQQLKLSEKDAWEQV 125
Query: 202 GWPLYWKYGHAFEAFKIIVTDPDSVL 227
W L KYG A + V + + +L
Sbjct: 126 AWKLEAKYGDPISAIERAVKEGEKIL 151
>sp|C3N545|IF2A_SULIA Translation initiation factor 2 subunit alpha OS=Sulfolobus
islandicus (strain M.16.27) GN=eif2a PE=3 SV=1
Length = 266
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 83/146 (56%)
Query: 82 ARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEP 141
+R P ++ VK + D G+YV+L EY ++ + +SE+S + ++++ ++K R
Sbjct: 6 SRLPSEGEILIATVKQVFDYGSYVTLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVV 65
Query: 142 VMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNI 201
V V+RVD+ KG +D+S ++V++++ + ++ K + + I+ V++ L + ++ + +
Sbjct: 66 VKVIRVDRRKGTVDVSLKKVTDDERRKKNLQWKKIQRLDKILELVSQQLKLSEKDAWEQV 125
Query: 202 GWPLYWKYGHAFEAFKIIVTDPDSVL 227
W L KYG A + V + + +L
Sbjct: 126 AWKLEAKYGDPISAIERAVKEGEKIL 151
>sp|C3MPG3|IF2A_SULIL Translation initiation factor 2 subunit alpha OS=Sulfolobus
islandicus (strain L.S.2.15 / Lassen #1) GN=eif2a PE=3
SV=1
Length = 266
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 83/146 (56%)
Query: 82 ARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEP 141
+R P ++ VK + D G+Y++L EY ++ + +SE+S + ++++ ++K R
Sbjct: 6 SRLPSEGEILIATVKQVFDYGSYITLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVV 65
Query: 142 VMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNI 201
V V+RVD+ KG +D+S ++V++++ + ++ K + + I+ V++ L + ++ + +
Sbjct: 66 VKVIRVDRRKGTVDVSLKKVTDDERRKKNLQWKKIQRLDKILELVSQQLKLSEKDAWEQV 125
Query: 202 GWPLYWKYGHAFEAFKIIVTDPDSVL 227
W L KYG A + V + + +L
Sbjct: 126 AWKLEAKYGDPISAIERAVKEGEKIL 151
>sp|Q2NE59|IF2A_METST Translation initiation factor 2 subunit alpha OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=eif2a PE=3 SV=1
Length = 260
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 74/144 (51%)
Query: 84 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVM 143
+PE ++ V + GA+ L EY E I SE+S ++++ ++ +
Sbjct: 8 WPEEGDLIVGTVHKVLGYGAFAKLEEYEGKEAFIHISEVSSGWVKNIRDYVRENQKIVAR 67
Query: 144 VLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGW 203
VLRV+ +KG++D S +R+ E+ +++ + ++ A+++ L+E Y +G+
Sbjct: 68 VLRVNPKKGHVDASLKRIREDQRTRRMQQWKIEQKAEKLLEISAKSINKTLDEAYDEVGY 127
Query: 204 PLYWKYGHAFEAFKIIVTDPDSVL 227
+ ++G +E F++ D ++VL
Sbjct: 128 LIMEEFGDLYEGFELASDDGENVL 151
>sp|O27363|IF2A_METTH Translation initiation factor 2 subunit alpha
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=eif2a PE=3 SV=1
Length = 262
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 69/144 (47%)
Query: 84 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVM 143
+PE V+ V + + GA+ +L EY E I SE+S ++++ ++ +
Sbjct: 11 WPEEGELVVGTVHKVLNYGAFATLEEYPGKEAFIHISEVSSGWVKNIRDFVRENQKIVAR 70
Query: 144 VLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGW 203
VLRV+ KG++D+S +R+ E+ + + + + A LG DL+ Y +G+
Sbjct: 71 VLRVNPRKGHVDVSMKRIREDQRTKKIQAWKIEQKAEKFLELAARDLGKDLDTAYEEVGY 130
Query: 204 PLYWKYGHAFEAFKIIVTDPDSVL 227
L +G + AF+ + + L
Sbjct: 131 ELMDIFGDLYGAFETAAEEGEKSL 154
>sp|A5UMB0|IF2A_METS3 Translation initiation factor 2 subunit alpha OS=Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861) GN=eif2a PE=3
SV=1
Length = 265
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 73/150 (48%), Gaps = 3/150 (2%)
Query: 84 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVM 143
+P+ ++ V + + GA+ L EY+ E I SE+S ++++ ++ +
Sbjct: 8 WPDEGELIIGTVYKVLNYGAFAKLEEYHGKEAFIHISEVSSGWVKNIRDHVRENQKIVCR 67
Query: 144 VLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGW 203
VLRV+ +KG++D S +R+ E+ + + + + A++LG L + Y +G+
Sbjct: 68 VLRVNPKKGHVDASLKRIREDQRTKKIQHWKIEQKAEKFLELSAKSLGKSLNDAYDEVGY 127
Query: 204 PLYWKYGHAFEAFKIIVTDPDSVLNSLTRE 233
L +G + AF+ T D SLT E
Sbjct: 128 ELMDIFGDVYGAFE---TAADDGAKSLTDE 154
>sp|Q8F7J8|PNP_LEPIN Polyribonucleotide nucleotidyltransferase OS=Leptospira interrogans
serogroup Icterohaemorrhagiae serovar Lai (strain 56601)
GN=pnp PE=3 SV=1
Length = 698
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 5/91 (5%)
Query: 77 CRMYEARYPEVDMAVMIQ--VKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLI 134
+M + + EV++ + + VK IAD GA+V +L EG+ S++ +R+ SV ++
Sbjct: 609 AKMVDGFFAEVEVGKIYEGKVKRIADFGAFVEILPGK--EGLCHISKIDFKRVNSVKDIV 666
Query: 135 KVGRIEPVMVLRVDKEKGYIDLSKRRVSEED 165
K G I V VL VDK G IDLS++ EE+
Sbjct: 667 KEGDIIRVKVLNVDK-TGKIDLSRKDALEEE 696
>sp|Q72NX7|PNP_LEPIC Polyribonucleotide nucleotidyltransferase OS=Leptospira interrogans
serogroup Icterohaemorrhagiae serovar copenhageni
(strain Fiocruz L1-130) GN=pnp PE=3 SV=1
Length = 698
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 5/91 (5%)
Query: 77 CRMYEARYPEVDMAVMIQ--VKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLI 134
+M + + EV++ + + VK IAD GA+V +L EG+ S++ +R+ SV ++
Sbjct: 609 AKMVDGFFAEVEVGKIYEGKVKRIADFGAFVEILPGK--EGLCHISKIDFKRVNSVKDIV 666
Query: 135 KVGRIEPVMVLRVDKEKGYIDLSKRRVSEED 165
K G I V VL VDK G IDLS++ EE+
Sbjct: 667 KEGDIIRVKVLNVDK-TGKIDLSRKDALEEE 696
>sp|Q04U27|PNP_LEPBJ Polyribonucleotide nucleotidyltransferase OS=Leptospira
borgpetersenii serovar Hardjo-bovis (strain JB197)
GN=pnp PE=3 SV=1
Length = 696
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Query: 77 CRMYEARYPEVDMAVMIQ--VKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLI 134
+M + + EV++ + + VK IAD GA+V +L EG+ S++ +R+ SV ++
Sbjct: 609 AKMVDGFFAEVEVGKIYEGKVKRIADFGAFVEILPGK--EGLCHISKIDFKRVNSVKDIV 666
Query: 135 KVGRIEPVMVLRVDKEKGYIDLSKRRVSEE 164
K G I V VL VDK G IDLS++ EE
Sbjct: 667 KEGDIIRVKVLNVDK-TGKIDLSRKDALEE 695
>sp|Q04ZJ9|PNP_LEPBL Polyribonucleotide nucleotidyltransferase OS=Leptospira
borgpetersenii serovar Hardjo-bovis (strain L550) GN=pnp
PE=3 SV=1
Length = 696
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Query: 77 CRMYEARYPEVDMAVMIQ--VKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLI 134
+M + + EV++ + + VK IAD GA+V +L EG+ S++ +R+ SV ++
Sbjct: 609 AKMVDGFFAEVEVGKIYEGKVKRIADFGAFVEILPGK--EGLCHISKIDFKRVNSVKDIV 666
Query: 135 KVGRIEPVMVLRVDKEKGYIDLSKRRVSEE 164
K G I V VL VDK G IDLS++ EE
Sbjct: 667 KEGDIIRVKVLNVDK-TGKIDLSRKDALEE 695
>sp|Q9JZ44|RS1_NEIMB 30S ribosomal protein S1 OS=Neisseria meningitidis serogroup B
(strain MC58) GN=rpsA PE=1 SV=1
Length = 561
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 95 VKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYI 154
VKNI D GA+V L I+G++ ++L+ RR++ S +++VG+ VL+ D+EK +
Sbjct: 200 VKNITDYGAFVDL---GGIDGLLHITDLAWRRVKHPSEVLEVGQEVEAKVLKFDQEKQRV 256
Query: 155 DLSKRRVSEEDIQACEERY 173
L +++ E+ RY
Sbjct: 257 SLGMKQLGEDPWSGLTRRY 275
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 83 RYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEL--SRRRIRSVSSLIKVGRIE 140
RYP+ + +V N+ D GA+V + IEG++ SE+ + + + S ++++G
Sbjct: 274 RYPQ-GTRLFGKVSNLTDYGAFVEI--EQGIEGLVHVSEMDWTNKNVHP-SKVVQLGDEV 329
Query: 141 PVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAE 188
VM+L +D+ + I L ++ + +NK + ++ + +
Sbjct: 330 EVMILEIDEGRRRISLGMKQCQANPWEEFAANHNKGDKISGAVKSITD 377
>sp|P38016|RS1_CHLMU 30S ribosomal protein S1 OS=Chlamydia muridarum (strain MoPn /
Nigg) GN=rpsA PE=3 SV=2
Length = 570
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 95 VKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYI 154
VKNI D G + L+ + I+G++ ++++ +RIR S ++++ + V++L VDKEKG +
Sbjct: 227 VKNITDFGVF---LDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRV 283
Query: 155 DLSKRRVSEEDIQACEERYNKSKLVHS 181
L ++ + E++Y K V
Sbjct: 284 ALGLKQKEHNPWEDIEKKYPPGKRVRG 310
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 81 EARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSR-RRIRSVSSLIKVGRI 139
E +YP + + V ++KN+ + GA+V L IEG+I S++S +++ S L K G
Sbjct: 386 EEKYP-IGLRVTAEIKNLTNYGAFVEL--EPGIEGLIHISDMSWIKKVSHPSELFKKGNT 442
Query: 140 EPVMVLRVDKEKGYIDLSKRRVS 162
++L VDKE I L ++++
Sbjct: 443 VEAVILSVDKESKKITLGVKQLT 465
>sp|O84100|RS1_CHLTR 30S ribosomal protein S1 OS=Chlamydia trachomatis (strain
D/UW-3/Cx) GN=rpsA PE=3 SV=1
Length = 569
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 95 VKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYI 154
VKNI D G + L+ + I+G++ ++++ +RIR S ++++ + V++L VDKEKG +
Sbjct: 227 VKNITDFGVF---LDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRV 283
Query: 155 DLSKRRVSEEDIQACEERYNKSKLVHS 181
L ++ + E++Y K V
Sbjct: 284 ALGLKQKEHNPWEDIEKKYPPGKRVRG 310
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 81 EARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSR-RRIRSVSSLIKVGRI 139
E +YP + + V ++KN+ + GA+V L IEG+I S++S +++ S L K G
Sbjct: 386 EEKYP-IGLRVTAEIKNLTNYGAFVEL--EPGIEGLIHISDMSWIKKVSHPSELFKKGNT 442
Query: 140 EPVMVLRVDKEKGYIDLSKRRVS 162
++L VDKE I L ++++
Sbjct: 443 VEAVILSVDKESKKITLGVKQLT 465
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 95 VKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYI 154
V I GA+V L N IEG+I SELS + + ++ +G V+++D + +
Sbjct: 486 VTKITAFGAFVEL--QNGIEGLIHVSELSEKPFAKIEDVLSIGDKVSAKVIKLDPDHKKV 543
Query: 155 DLS 157
LS
Sbjct: 544 SLS 546
>sp|Q73NW1|PNP_TREDE Polyribonucleotide nucleotidyltransferase OS=Treponema denticola
(strain ATCC 35405 / CIP 103919 / DSM 14222) GN=pnp PE=3
SV=1
Length = 698
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 10/88 (11%)
Query: 85 PEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMV 144
PEV M VK I D GA+V +L EG+ S+LSR R+ VS ++K G+ PV +
Sbjct: 619 PEVGMVYDGTVKKIMDFGAFVEILPGK--EGLCHISKLSRSRVEKVSDVLKEGQEIPVKL 676
Query: 145 LRVDKEKGYIDLSKRRVSEEDIQACEER 172
L +DK G ++LS + A EER
Sbjct: 677 LEIDK-LGRLNLSY-------VDALEER 696
>sp|Q9Z8M3|RS1_CHLPN 30S ribosomal protein S1 OS=Chlamydia pneumoniae GN=rpsA PE=3 SV=1
Length = 580
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 95 VKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYI 154
VKNI D G ++ L + I+G++ ++++ +RIR S ++++ + V++L VDKEKG +
Sbjct: 227 VKNITDFGVFLDL---DGIDGLLHITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRV 283
Query: 155 DLSKRRVSEEDIQACEERYNKSKLV 179
L ++ + E++Y K V
Sbjct: 284 ALGLKQKEHNPWEDIEKKYPPGKRV 308
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 81 EARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSR-RRIRSVSSLIKVGRI 139
E +YP + + V ++KN+ + GA+V L IEG+I S++S +++ S L K G
Sbjct: 386 EEKYP-IGLHVNAEIKNLTNYGAFVEL--EPGIEGLIHISDMSWIKKVSHPSELFKKGNS 442
Query: 140 EPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVA 187
++L VDKE I L +++S E + ++ ++ +
Sbjct: 443 VEAVILSVDKESKKITLGVKQLSSNPWNEIEAMFPAGTVISGVVTKIT 490
Score = 35.0 bits (79), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 81 EARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIE 140
EA +P + V I GA+V L N IEG+I SELS + + +I +G
Sbjct: 473 EAMFP-AGTVISGVVTKITAFGAFVEL--QNGIEGLIHVSELSDKPFAKIEDIISIGENV 529
Query: 141 PVMVLRVDKEKGYIDLS 157
V+++D + + LS
Sbjct: 530 SAKVIKLDPDHKKVSLS 546
>sp|Q97I09|ISPH_CLOAB 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=ispH PE=3 SV=1
Length = 642
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 94 QVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGY 153
+VK + D GA+V E ++G++ SE+S R+ + ++K+G V VL VDKE
Sbjct: 490 EVKRLTDFGAFV---EIEGVDGLLHVSEISWGRVEKPADVLKIGDKIKVYVLSVDKENKK 546
Query: 154 IDLSKRRVSEEDIQACEERY 173
+ LS ++++E EE+Y
Sbjct: 547 LSLSVKKLTENPWNNVEEKY 566
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 53/114 (46%), Gaps = 17/114 (14%)
Query: 54 RENAK----AKKLSEQPIMASHSPNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLE 109
+EN K KKL+E P E +YP V V+ +V AD GA+V L
Sbjct: 542 KENKKLSLSVKKLTENP----------WNNVEEKYP-VGSVVLGKVIRFADFGAFVKL-- 588
Query: 110 YNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSE 163
++G++ SE+S +RI S + VG +L V E+ I LS R V E
Sbjct: 589 EPGVDGLVHISEISHKRIAKPSDALNVGEEIKAKILEVSSEEKKIGLSIREVEE 642
>sp|Q97BP2|IF2A_THEVO Translation initiation factor 2 subunit alpha OS=Thermoplasma
volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 /
NBRC 15438 / GSS1) GN=eif2a PE=3 SV=1
Length = 254
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 60/126 (47%)
Query: 85 PEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMV 144
PEV V++++ + + GA L EY +EG I SE++ ++ + S ++ G+ V
Sbjct: 7 PEVGDLVVVKITEVKNFGANGILEEYPGVEGYIHISEVATGWVKHIRSYLREGQRVVCKV 66
Query: 145 LRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWP 204
+ V++E+ +DLS +RV++ + + + + V L DLE G
Sbjct: 67 INVNQERKNVDLSLKRVNQHQSREKIAEWKNEQKADKLFEIVCSKLNKDLEACKKEFGVR 126
Query: 205 LYWKYG 210
L YG
Sbjct: 127 LVELYG 132
>sp|A0LHM4|PNP_SYNFM Polyribonucleotide nucleotidyltransferase OS=Syntrophobacter
fumaroxidans (strain DSM 10017 / MPOB) GN=pnp PE=3 SV=1
Length = 699
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 85 PEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMV 144
PEV M ++ + D GA+ +L NIEG+I S+L RR+R V+ +++ G V V
Sbjct: 617 PEVGQLYMSRIVRVTDFGAFAEILP--NIEGLIHISQLEHRRVRKVTDVVQEGDEVLVKV 674
Query: 145 LRVDKEKGYIDLSKR 159
+ +DK+ G I LS++
Sbjct: 675 IEIDKD-GRIRLSRK 688
>sp|A9F8Z2|PNP_SORC5 Polyribonucleotide nucleotidyltransferase OS=Sorangium cellulosum
(strain So ce56) GN=pnp PE=3 SV=1
Length = 757
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 85 PEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMV 144
PEV VK I D GA+V +L N +G++ SE++ R+ V ++K G V V
Sbjct: 620 PEVGATYKGTVKRITDFGAFVEILP--NTDGLLHISEMAHTRVERVEDVVKEGDSLDVKV 677
Query: 145 LRVDKEKGYIDLSKR 159
L VD+E G I LS+R
Sbjct: 678 LSVDRE-GKIRLSRR 691
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,325,502
Number of Sequences: 539616
Number of extensions: 3563286
Number of successful extensions: 12030
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 365
Number of HSP's that attempted gapping in prelim test: 11550
Number of HSP's gapped (non-prelim): 782
length of query: 259
length of database: 191,569,459
effective HSP length: 115
effective length of query: 144
effective length of database: 129,513,619
effective search space: 18649961136
effective search space used: 18649961136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)