Query 044309
Match_columns 259
No_of_seqs 291 out of 2249
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 23:32:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044309.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044309hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a19_A EIF-2- alpha, eukaryoti 100.0 4.1E-36 1.4E-40 256.2 9.6 157 76-233 4-160 (175)
2 1kl9_A Eukaryotic translation 100.0 3.7E-34 1.3E-38 245.6 9.2 159 75-234 3-169 (182)
3 1q8k_A Eukaryotic translation 100.0 1.4E-32 4.7E-37 252.7 6.7 163 76-239 2-172 (308)
4 3aev_A Translation initiation 100.0 5E-32 1.7E-36 245.7 10.2 160 78-238 2-161 (275)
5 3cw2_C Translation initiation 100.0 9.2E-31 3.1E-35 236.4 -0.0 162 78-239 2-163 (266)
6 3go5_A Multidomain protein wit 99.9 1.6E-22 5.5E-27 184.1 4.0 138 51-222 123-268 (285)
7 2khi_A 30S ribosomal protein S 99.8 1.8E-21 6.2E-26 154.7 6.9 100 59-171 13-113 (115)
8 2khj_A 30S ribosomal protein S 99.8 6.3E-20 2.1E-24 144.3 7.0 92 59-163 14-105 (109)
9 1luz_A Protein K3, protein K2; 99.8 1.3E-19 4.3E-24 138.0 7.8 79 84-164 8-87 (88)
10 2cqo_A Nucleolar protein of 40 99.7 1.4E-18 4.8E-23 139.1 6.9 96 62-169 8-105 (119)
11 2k4k_A GSP13, general stress p 99.7 1.2E-17 4.1E-22 135.4 9.6 82 83-167 4-85 (130)
12 2eqs_A ATP-dependent RNA helic 99.7 3.7E-17 1.3E-21 127.4 9.4 81 86-168 11-93 (103)
13 2k52_A Uncharacterized protein 99.7 1.2E-16 4E-21 118.9 11.3 71 87-163 5-75 (80)
14 3go5_A Multidomain protein wit 99.6 6.9E-16 2.4E-20 140.4 7.5 99 87-194 69-170 (285)
15 4aid_A Polyribonucleotide nucl 99.5 8.6E-16 3E-20 154.6 -0.2 88 81-172 632-719 (726)
16 1e3p_A Guanosine pentaphosphat 99.5 8.6E-16 2.9E-20 155.5 -4.2 86 86-174 666-755 (757)
17 3m7n_A Putative uncharacterize 99.5 2.7E-13 9.3E-18 115.4 10.3 89 83-194 54-150 (179)
18 1go3_E DNA-directed RNA polyme 99.4 4E-13 1.4E-17 114.4 11.0 81 85-168 79-177 (187)
19 1wi5_A RRP5 protein homolog; S 99.4 2E-13 6.9E-18 108.6 8.0 78 83-162 18-96 (119)
20 3cdi_A Polynucleotide phosphor 99.4 9.1E-15 3.1E-19 147.5 0.0 85 82-170 623-707 (723)
21 2nn6_I 3'-5' exoribonuclease C 99.4 7.8E-13 2.7E-17 115.2 9.5 93 84-194 78-178 (209)
22 4ayb_E DNA-directed RNA polyme 99.4 1.8E-12 6.2E-17 109.8 9.9 80 85-167 79-175 (180)
23 3psi_A Transcription elongatio 99.4 1E-12 3.5E-17 138.4 8.9 77 82-161 898-975 (1219)
24 3bzc_A TEX; helix-turn-helix, 99.3 6E-13 2.1E-17 135.2 4.5 77 83-162 651-727 (785)
25 2b8k_G B16, DNA-directed RNA p 99.3 3.4E-12 1.2E-16 111.7 8.0 89 85-177 81-182 (215)
26 3psf_A Transcription elongatio 99.3 4.7E-13 1.6E-17 139.1 0.0 78 82-162 901-979 (1030)
27 1y14_B B16, RPB7, DNA-directed 99.2 2.5E-11 8.7E-16 102.1 9.3 65 85-152 81-155 (171)
28 2je6_I RRP4, exosome complex R 99.2 1.9E-11 6.6E-16 109.2 8.4 75 84-161 71-148 (251)
29 2c35_B Human RPB7, DNA-directe 99.2 3.3E-11 1.1E-15 101.4 9.1 72 85-160 79-165 (172)
30 2ba0_A Archeal exosome RNA bin 99.2 6.2E-11 2.1E-15 104.5 9.5 75 84-161 54-129 (229)
31 2z0s_A Probable exosome comple 99.1 7.2E-11 2.5E-15 104.4 7.7 75 84-161 63-141 (235)
32 3h0g_G DNA-directed RNA polyme 99.1 4.8E-11 1.6E-15 100.7 4.4 72 85-160 82-166 (172)
33 2id0_A Exoribonuclease 2; RNAs 99.0 2.1E-09 7.2E-14 107.3 11.0 81 75-159 549-643 (644)
34 1hh2_P NUSA, N utilization sub 98.8 4.1E-08 1.4E-12 91.2 11.8 66 87-161 134-201 (344)
35 3ayh_B DNA-directed RNA polyme 98.7 2.3E-08 7.7E-13 86.5 7.5 62 87-151 81-161 (203)
36 2vnu_D Exosome complex exonucl 98.7 3.1E-08 1.1E-12 100.6 8.6 79 76-159 662-760 (760)
37 2ckz_B C25, DNA-directed RNA p 98.7 2.7E-08 9.2E-13 87.1 6.1 64 87-152 81-158 (218)
38 1yz7_A Probable translation in 98.6 2.2E-09 7.5E-14 92.1 -2.5 69 167-236 4-72 (188)
39 2bx2_L Ribonuclease E, RNAse E 98.6 1.1E-07 3.6E-12 92.7 8.8 62 87-150 45-117 (517)
40 2nn6_H Exosome complex exonucl 98.6 7.1E-08 2.4E-12 88.4 6.3 74 84-160 92-175 (308)
41 2wp8_J Exosome complex exonucl 98.5 1.1E-07 3.7E-12 99.0 7.8 79 76-159 879-977 (977)
42 2ja9_A Exosome complex exonucl 98.5 2.3E-07 7.9E-12 78.6 8.1 71 84-158 4-75 (175)
43 1k0r_A NUSA; two component arr 98.4 6.4E-07 2.2E-11 83.7 9.8 78 85-170 128-212 (366)
44 2bh8_A 1B11; transcription, mo 98.4 2E-07 6.9E-12 72.0 4.1 42 83-127 58-99 (101)
45 2asb_A Transcription elongatio 98.3 2E-06 6.9E-11 76.5 8.3 68 87-162 7-83 (251)
46 2nn6_G Exosome complex exonucl 97.9 1.9E-05 6.3E-10 71.8 7.1 74 83-160 123-196 (289)
47 2bh8_A 1B11; transcription, mo 97.1 0.001 3.5E-08 51.0 6.7 57 87-147 13-72 (101)
48 2khj_A 30S ribosomal protein S 96.6 0.00062 2.1E-08 52.5 1.8 49 155-204 11-67 (109)
49 1jjg_A M156R; beta barrel, S1 96.6 0.0093 3.2E-07 45.1 7.9 69 83-156 29-98 (102)
50 2r7d_A Ribonuclease II family 96.5 0.0065 2.2E-07 58.4 8.0 67 76-159 395-461 (469)
51 1kl9_A Eukaryotic translation 96.4 8.8E-07 3E-11 75.4 -17.4 67 48-129 71-143 (182)
52 3d0f_A Penicillin-binding 1 tr 95.4 0.055 1.9E-06 41.2 7.7 59 83-143 29-93 (106)
53 1e3p_A Guanosine pentaphosphat 95.4 0.0013 4.6E-08 66.7 -2.1 105 87-233 609-730 (757)
54 2khi_A 30S ribosomal protein S 95.2 0.0017 5.9E-08 50.6 -1.7 47 156-203 11-65 (115)
55 3cdi_A Polynucleotide phosphor 94.3 0.0078 2.7E-07 60.8 0.0 90 87-216 571-672 (723)
56 2rf4_A DNA-directed RNA polyme 94.1 0.2 6.7E-06 43.2 8.4 66 85-152 127-204 (214)
57 2cqo_A Nucleolar protein of 40 90.7 0.015 5.1E-07 45.7 -2.9 53 160-216 7-68 (119)
58 1h95_A CSD, Y-box binding prot 89.8 1.9 6.5E-05 31.1 8.2 63 88-153 6-70 (79)
59 1wfq_A UNR protein; beta-barre 89.0 2.1 7.2E-05 31.7 8.0 53 87-146 15-68 (89)
60 3h8z_A FragIle X mental retard 87.8 1.7 5.6E-05 34.6 7.1 58 87-144 14-71 (128)
61 2yty_A Cold shock domain-conta 87.0 1.2 4E-05 33.0 5.4 52 87-145 15-67 (88)
62 2k5n_A Putative cold-shock pro 85.3 8.1 0.00028 27.5 9.7 59 91-159 3-63 (74)
63 3i2z_B RNA chaperone, negative 84.8 3.7 0.00013 28.9 7.0 52 90-147 5-59 (71)
64 3cam_A Cold-shock domain famil 84.4 3.8 0.00013 28.5 6.8 52 91-147 2-55 (67)
65 3aqq_A Calcium-regulated heat 83.2 4.1 0.00014 33.1 7.5 54 87-147 59-114 (147)
66 2ytx_A Cold shock domain-conta 83.1 1.4 4.9E-05 33.1 4.4 51 88-145 16-67 (97)
67 2k52_A Uncharacterized protein 82.5 0.29 1E-05 35.1 0.3 32 172-204 2-41 (80)
68 1c9o_A CSPB, cold-shock protei 82.4 6.7 0.00023 27.0 7.5 51 91-147 2-54 (66)
69 1luz_A Protein K3, protein K2; 82.1 0.36 1.2E-05 35.6 0.7 39 173-216 9-58 (88)
70 3i4o_A Translation initiation 80.4 2.9 0.0001 30.4 5.1 62 89-157 14-77 (79)
71 3a0j_A Cold shock protein; OB- 80.0 5.9 0.0002 28.0 6.6 51 91-147 2-54 (73)
72 4aid_A Polyribonucleotide nucl 78.7 0.41 1.4E-05 48.3 0.0 47 166-216 628-682 (726)
73 1wi5_A RRP5 protein homolog; S 77.8 0.74 2.5E-05 35.4 1.2 24 171-195 17-40 (119)
74 1hh2_P NUSA, N utilization sub 77.2 0.13 4.4E-06 47.6 -3.9 62 132-195 85-153 (344)
75 2k4k_A GSP13, general stress p 76.5 0.56 1.9E-05 37.0 0.2 33 171-204 3-43 (130)
76 2kcm_A Cold shock domain famil 76.2 11 0.00038 26.8 7.1 60 92-159 2-64 (74)
77 2eqs_A ATP-dependent RNA helic 74.2 1.1 3.8E-05 33.7 1.4 23 171-194 8-30 (103)
78 1g6p_A Cold shock protein TMCS 72.6 3 0.0001 28.9 3.2 49 92-146 2-52 (66)
79 1q8k_A Eukaryotic translation 72.3 0.0099 3.4E-07 54.2 -12.5 49 48-107 69-122 (308)
80 3ts2_A Protein LIN-28 homolog 72.0 12 0.00041 30.0 7.1 52 90-147 9-70 (148)
81 1x65_A UNR protein; cell-free 68.2 2 6.8E-05 31.9 1.5 50 89-146 7-57 (89)
82 3ulj_A LIN28B, DNA-binding pro 66.4 21 0.00072 26.3 6.9 53 90-147 8-69 (90)
83 1d7q_A Translation initiation 66.0 32 0.0011 27.6 8.4 69 84-160 27-96 (143)
84 2ytv_A Cold shock domain-conta 60.9 4.7 0.00016 29.1 2.3 49 90-146 8-58 (79)
85 2lss_A Cold shock-like protein 63.8 1.9 6.6E-05 30.3 0.0 51 90-146 4-57 (70)
86 2a19_A EIF-2- alpha, eukaryoti 58.4 2.9 9.8E-05 34.7 0.9 32 172-204 11-53 (175)
87 2dgy_A MGC11102 protein; EIF-1 55.9 31 0.0011 26.5 6.4 68 84-159 11-80 (111)
88 3psf_A Transcription elongatio 50.6 3.3 0.00011 43.4 0.0 33 171-204 901-941 (1030)
89 2oqk_A Putative translation in 48.4 32 0.0011 26.4 5.4 65 84-156 28-93 (117)
90 2nn6_I 3'-5' exoribonuclease C 44.4 18 0.00061 30.6 3.7 56 133-188 78-151 (209)
91 1y14_B B16, RPB7, DNA-directed 44.3 7.1 0.00024 31.7 1.1 21 174-195 82-102 (171)
92 1fr3_A MOP, molybdate/tungstat 43.4 52 0.0018 21.4 5.4 48 89-144 7-58 (67)
93 2c35_B Human RPB7, DNA-directe 42.4 8 0.00027 31.4 1.1 21 174-195 80-100 (172)
94 2l55_A SILB,silver efflux prot 41.4 63 0.0021 23.1 5.8 49 91-148 6-62 (82)
95 2jpp_A Translational repressor 41.4 25 0.00087 24.9 3.5 32 130-163 8-39 (70)
96 2bti_A Carbon storage regulato 40.8 28 0.00096 24.1 3.6 32 130-163 10-41 (63)
97 3m7n_A Putative uncharacterize 39.5 37 0.0013 27.7 4.8 52 133-185 55-124 (179)
98 2b8k_G B16, DNA-directed RNA p 37.7 10 0.00035 32.4 1.1 21 174-195 82-102 (215)
99 3bzc_A TEX; helix-turn-helix, 37.2 3.1 0.00011 42.3 -2.6 42 171-216 650-699 (785)
100 1vpz_A Carbon storage regulato 37.1 31 0.001 24.7 3.3 33 129-163 19-51 (73)
101 2z0s_A Probable exosome comple 36.6 26 0.00089 30.0 3.5 54 133-188 63-130 (235)
102 3cw2_C Translation initiation 36.4 15 0.00051 32.3 2.0 40 173-216 9-58 (266)
103 3aev_A Translation initiation 36.3 11 0.00037 33.4 1.1 32 172-204 7-49 (275)
104 1g5v_A SurviVal motor neuron p 35.9 96 0.0033 22.6 6.1 39 84-123 21-61 (88)
105 3psi_A Transcription elongatio 35.4 8.5 0.00029 41.1 0.2 33 171-204 898-938 (1219)
106 1go3_E DNA-directed RNA polyme 33.7 13 0.00045 30.4 1.1 30 173-203 79-115 (187)
107 2vb2_X Copper protein, cation 33.4 1.3E+02 0.0046 21.6 7.2 53 89-148 16-76 (88)
108 1jt8_A EIF-1A, probable transl 32.8 25 0.00086 26.6 2.5 65 88-159 19-85 (102)
109 4ayb_E DNA-directed RNA polyme 32.7 14 0.00047 30.1 1.1 21 174-195 80-100 (180)
110 2jk8_A BEPA, putative cell fil 30.6 1E+02 0.0035 27.2 6.5 54 84-144 247-300 (302)
111 1mhn_A SurviVal motor neuron p 28.9 1.2E+02 0.0042 19.8 6.2 39 84-123 14-54 (59)
112 1gut_A Mopii, molybdate bindin 28.0 1.2E+02 0.0042 19.7 5.3 48 90-144 8-59 (68)
113 2qcp_X Cation efflux system pr 27.9 1.6E+02 0.0055 20.7 7.3 52 90-148 9-68 (80)
114 2je6_I RRP4, exosome complex R 27.0 79 0.0027 27.3 5.0 54 133-188 71-137 (251)
115 3s6w_A Tudor domain-containing 24.9 1.3E+02 0.0044 19.2 4.7 39 84-123 12-52 (54)
116 1cuk_A RUVA protein; DNA repai 24.0 3.1E+02 0.011 22.7 8.7 53 90-151 4-56 (203)
117 1t3o_A Carbon storage regulato 23.4 37 0.0013 25.5 1.9 33 129-163 28-60 (95)
118 3h0g_G DNA-directed RNA polyme 23.3 12 0.00042 30.5 -0.9 21 174-195 83-103 (172)
119 4a4f_A SurviVal of motor neuro 22.9 1.7E+02 0.006 19.4 6.1 39 84-123 19-59 (64)
120 3bju_A Lysyl-tRNA synthetase; 22.5 2.3E+02 0.0079 27.0 7.8 70 90-159 59-133 (521)
121 1e1o_A Lysyl-tRNA synthetase, 21.6 3.9E+02 0.013 25.3 9.2 71 90-160 68-141 (504)
122 2ba0_A Archeal exosome RNA bin 21.2 69 0.0024 27.2 3.4 54 133-188 54-118 (229)
123 3pnw_C Tudor domain-containing 20.8 1.9E+02 0.0065 20.2 5.2 36 87-123 31-68 (77)
No 1
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=100.00 E-value=4.1e-36 Score=256.22 Aligned_cols=157 Identities=62% Similarity=1.029 Sum_probs=142.6
Q ss_pred hhhhhhhcCCCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEccccccccccCccccccCCCeEEEEEEEEeCCCCeEE
Q 044309 76 ECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYID 155 (259)
Q Consensus 76 ~~R~~~~~~~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~vD~~~gkI~ 155 (259)
.|||+.+.+|++|+++.|+|++|++|||||+|.+|++++||||+||++|.++.++++.+++||.|.|+|+++|+++++|+
T Consensus 4 ~~~~~~~~~p~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~ 83 (175)
T 2a19_A 4 HCRFYENKYPEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYID 83 (175)
T ss_dssp CCCSSSSSSCCTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEE
T ss_pred ceEEhhhcCCCCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEE
Confidence 48999999999999999999999999999999755789999999999999999999999999999999999999999999
Q ss_pred EEEeecchhhHHHHHHhccccceEEEEEEecccccCCchHHHHHhhchhhHHhhcCHHHHHHHHhcCcchhhccCCCc
Q 044309 156 LSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYWKYGHAFEAFKIIVTDPDSVLNSLTRE 233 (259)
Q Consensus 156 LSlK~~~~~~~~~~~~~~~~g~~v~g~V~~i~~~~G~fve~~~~~~sw~l~~~~~~~~~~fk~a~~~~~~~l~~l~~~ 233 (259)
||+|++.++||..+.++|+.|+.+.|+|+++++.+|+.++++|..++|++.++||++|+||++|++ ++++|.+++++
T Consensus 84 LSlk~~~~~~~~~~~~~~~~g~~v~g~V~~i~~~~G~~~e~~~~~~~~~l~~~~g~~~~af~~a~~-~~~~l~~~~~~ 160 (175)
T 2a19_A 84 LSKRRVSSEDIIKCEEKYQKSKTVHSILRYCAEKFQIPLEELYKTIAWPLSRKFGHAYEAFKLSII-DETVWEGIEPP 160 (175)
T ss_dssp EESTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTHHHHHHHHSSHHHHHHHHHH-CGGGGTTCCCS
T ss_pred EEEEecCcChHHHHHHhccCCCcceEEEEEchhhcCCCHHHHHHHHHHHHHHHhCcHHHHHHHHhC-ChhhhhhcCCC
Confidence 999999999999999999999999999999997899999999999999999999999999999999 56799999974
No 2
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=100.00 E-value=3.7e-34 Score=245.58 Aligned_cols=159 Identities=59% Similarity=0.939 Sum_probs=136.7
Q ss_pred hhhhhhhhcCCCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEccccccccccCccccccCCCeEEEEEEEEeCCCCeE
Q 044309 75 LECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYI 154 (259)
Q Consensus 75 ~~~R~~~~~~~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~vD~~~gkI 154 (259)
++|||+...+|++|+++.|+|++|++|||||+|.++++++||||+||++|.++.++++.+++||.|.|+|+++|+++++|
T Consensus 3 ~~~~~~~~~~p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI 82 (182)
T 1kl9_A 3 LSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYI 82 (182)
T ss_dssp CCCCSSSSSSCCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEE
T ss_pred eeeEeccccCCCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEE
Confidence 67999999998899999999999999999999965578999999999999999999999999999999999999999999
Q ss_pred EEEEeecchhhHHHHHHhccccceEEEEEEecccccCC----chHHHHHhhchhhHHhhcC----HHHHHHHHhcCcchh
Q 044309 155 DLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPLYWKYGH----AFEAFKIIVTDPDSV 226 (259)
Q Consensus 155 ~LSlK~~~~~~~~~~~~~~~~g~~v~g~V~~i~~~~G~----fve~~~~~~sw~l~~~~~~----~~~~fk~a~~~~~~~ 226 (259)
+||+|++.++||..+.++|+.|+.+.|+|++++++||+ .+++|+...+|++.+++++ +|+||++|+. ++++
T Consensus 83 ~LSlk~~~~~p~~~~~~~~~~g~~v~g~v~~i~~~~gv~l~~giegl~h~s~~~~~~~~~~~~~~~~~~f~~~~~-~~~~ 161 (182)
T 1kl9_A 83 DLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVS-DPSI 161 (182)
T ss_dssp EEESTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHTHHHHHHHHTCTTHHHHHHHHHHHH-CGGG
T ss_pred EEEEeecCcChHHHHHHhccCCCEEEEEEEEchhhcCCcccCChhheEEeeecchhhhcCCcchhHHHHHHHHhc-Chhh
Confidence 99999999999999999999999999999999888997 4577888888988899999 9999999999 5679
Q ss_pred hccCCCcc
Q 044309 227 LNSLTREV 234 (259)
Q Consensus 227 l~~l~~~~ 234 (259)
|.++++++
T Consensus 162 l~~~~~~~ 169 (182)
T 1kl9_A 162 LDSLDLNE 169 (182)
T ss_dssp GTTSSCCH
T ss_pred hhhcCCCH
Confidence 99999754
No 3
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.97 E-value=1.4e-32 Score=252.74 Aligned_cols=163 Identities=56% Similarity=0.868 Sum_probs=151.6
Q ss_pred hhhhhhhcCCCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEccccccccccCccccccCCCeEEEEEEEEeCCCCeEE
Q 044309 76 ECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYID 155 (259)
Q Consensus 76 ~~R~~~~~~~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~vD~~~gkI~ 155 (259)
+|||+.+.+|++|++|.|+|++|++|||||+|.+|++++||||+|+++|+++.++++.|++||.|.|+|+++|+++++|+
T Consensus 2 ~~~f~~~~~~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~ 81 (308)
T 1q8k_A 2 SCRFYQHKFPEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYID 81 (308)
T ss_dssp CCCSSSSCCCSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEE
T ss_pred ceEehhhcCCCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEE
Confidence 58999999999999999999999999999999877789999999999999999999999999999999999999999999
Q ss_pred EEEeecchhhHHHHHHhccccceEEEEEEecccccCCch----HHHHHhhchhhHHhhcC----HHHHHHHHhcCcchhh
Q 044309 156 LSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDL----EELYVNIGWPLYWKYGH----AFEAFKIIVTDPDSVL 227 (259)
Q Consensus 156 LSlK~~~~~~~~~~~~~~~~g~~v~g~V~~i~~~~G~fv----e~~~~~~sw~l~~~~~~----~~~~fk~a~~~~~~~l 227 (259)
||+|++.++||..+.++|+.|+.+.|+|.++++.||+|+ +++|.+++|++.++|++ +|++|+.|+. ++++|
T Consensus 82 LSlK~~~~~p~~~~~~~~~~G~~v~G~V~~v~~~~G~fi~~~~e~l~~~i~~~l~~~~g~~~~~~y~af~~a~~-~~~~l 160 (308)
T 1q8k_A 82 LSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVS-DPSIL 160 (308)
T ss_dssp EECSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHTHHHHHHHTTCSSHHHHHHHHHTTT-CGGGG
T ss_pred EEEEecccChHHHHHHHccCCCeeEEEEEEcccccCCccCCCHHHHHHHHHHHHHHHhCCcchhHHHHHHHHcC-Chhhh
Confidence 999999999999999999999999999999987679954 56899999999999999 9999999999 45699
Q ss_pred ccCCCccccCCC
Q 044309 228 NSLTREVKEIGP 239 (259)
Q Consensus 228 ~~l~~~~~~~~~ 239 (259)
.++++++...++
T Consensus 161 ~~~~i~~~~~~~ 172 (308)
T 1q8k_A 161 DSLDLNEDEREV 172 (308)
T ss_dssp GGCCCCHHHHHH
T ss_pred hhcCCCHHHHHH
Confidence 999987654443
No 4
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=99.97 E-value=5e-32 Score=245.69 Aligned_cols=160 Identities=29% Similarity=0.429 Sum_probs=147.2
Q ss_pred hhhhhcCCCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEccccccccccCccccccCCCeEEEEEEEEeCCCCeEEEE
Q 044309 78 RMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLS 157 (259)
Q Consensus 78 R~~~~~~~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~vD~~~gkI~LS 157 (259)
+++.+.+|++|++|.|+|++|.+||+||+|++|++++||||+||++++++.++++.+++||.|.|+|+++|+++++|+||
T Consensus 2 ~~~~~~~p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LS 81 (275)
T 3aev_A 2 PRKAREYPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLS 81 (275)
T ss_dssp -----CCCCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEE
T ss_pred CcccccCCCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEE
Confidence 45677888899999999999999999999987668999999999999999999999999999999999999999999999
Q ss_pred EeecchhhHHHHHHhccccceEEEEEEecccccCCchHHHHHhhchhhHHhhcCHHHHHHHHhcCcchhhccCCCccccC
Q 044309 158 KRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYWKYGHAFEAFKIIVTDPDSVLNSLTREVKEI 237 (259)
Q Consensus 158 lK~~~~~~~~~~~~~~~~g~~v~g~V~~i~~~~G~fve~~~~~~sw~l~~~~~~~~~~fk~a~~~~~~~l~~l~~~~~~~ 237 (259)
+|++.++||....++|+.|+.+.|+|+++++++|+++++++..++|++.++||+++++|++|+++++++|.+| ++..+.
T Consensus 82 lk~~~~~~~~~~~~~~~~g~~v~g~v~~v~~~~G~~~ee~~~~~~w~l~~~~g~~~~afk~a~~~~~~~l~~l-i~~~~~ 160 (275)
T 3aev_A 82 LRRVTQQQRKAKLQEFKRAQKAENLLRLAAEKLGKDFEAAWREVWVPLEEEWGEVYAAFEDAAKDGIEVLKGH-VPDEWL 160 (275)
T ss_dssp STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHTHHHHHHHHSSHHHHHHHHHHHCGGGGBTT-BCGGGH
T ss_pred EeecCcchhHHHHHhccCCCeEEEEEEEchhhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHhhcCcHHHHhh-CCHHHH
Confidence 9999999999999999999999999999997799999999999999999999999999999999777899999 876554
Q ss_pred C
Q 044309 238 G 238 (259)
Q Consensus 238 ~ 238 (259)
+
T Consensus 161 ~ 161 (275)
T 3aev_A 161 P 161 (275)
T ss_dssp H
T ss_pred H
Confidence 4
No 5
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=99.96 E-value=9.2e-31 Score=236.40 Aligned_cols=162 Identities=24% Similarity=0.447 Sum_probs=151.0
Q ss_pred hhhhhcCCCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEccccccccccCccccccCCCeEEEEEEEEeCCCCeEEEE
Q 044309 78 RMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLS 157 (259)
Q Consensus 78 R~~~~~~~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~vD~~~gkI~LS 157 (259)
||+...++++|++|.|+|++|.+|||||+|++|++.+||||+||++++++.++++.+++||.|.|+|+++|+++++|+||
T Consensus 2 r~~~~~~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LS 81 (266)
T 3cw2_C 2 IYSRSKLPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVS 81 (266)
T ss_dssp CCCSSSSCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEE
T ss_pred CccccccCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEE
Confidence 56777888899999999999999999999986678999999999999999999999999999999999999989999999
Q ss_pred EeecchhhHHHHHHhccccceEEEEEEecccccCCchHHHHHhhchhhHHhhcCHHHHHHHHhcCcchhhccCCCccccC
Q 044309 158 KRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYWKYGHAFEAFKIIVTDPDSVLNSLTREVKEI 237 (259)
Q Consensus 158 lK~~~~~~~~~~~~~~~~g~~v~g~V~~i~~~~G~fve~~~~~~sw~l~~~~~~~~~~fk~a~~~~~~~l~~l~~~~~~~ 237 (259)
+|++.+++|..+.++|+.|+.+.++|+.+++.+|...++++.+++|+|.+.|++++++||+|+++++++|.++++++...
T Consensus 82 lk~~~~~~~~~~~~~~~~~~~~~~iv~~lae~~~~~~ee~~~~i~~~l~~~~~~~~~aFk~a~~~~~~~l~~~~i~~~~~ 161 (266)
T 3cw2_C 82 LKKVTDDERRKKNLQWKKIQRLDKILELVSQKLKLSEKDAWEQVAWKLEAKYGDPITAIEKAVKEGEKILIDAGVPEIWV 161 (266)
T ss_dssp STTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTHHHHHTTSSCHHHHHHHHHHHCSHHHHTTTCCSTTH
T ss_pred EEecchhhHHHHHHhccccCccceeeeehhhhCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCchhhhhcCCCHHHH
Confidence 99999999999999999999999999999988998888899999999999999999999999996678999999876554
Q ss_pred CC
Q 044309 238 GP 239 (259)
Q Consensus 238 ~~ 239 (259)
++
T Consensus 162 ~~ 163 (266)
T 3cw2_C 162 KP 163 (266)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 6
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=99.85 E-value=1.6e-22 Score=184.10 Aligned_cols=138 Identities=17% Similarity=0.121 Sum_probs=116.2
Q ss_pred ccchhhhhh----hhc-ccCccccCCCCchhhhhhhhcCCCCCcEEEEEEEEEeCceEEE-EEccCCCEEEEEEcccccc
Q 044309 51 EFSRENAKA----KKL-SEQPIMASHSPNLECRMYEARYPEVDMAVMIQVKNIADMGAYV-SLLEYNNIEGMILFSELSR 124 (259)
Q Consensus 51 eid~e~~ri----K~l-~~~pw~~~~~~~~~~R~~~~~~~~~G~iv~G~V~~I~~~GafV-~L~ey~~~eGllhisEls~ 124 (259)
++|+ ++|| |+. ..+||.. ....++ +|++|.|+|+++++||+|| .++ ++++||||.||++
T Consensus 123 ~iD~-~~Ri~ls~k~~~~~~~~~~----------~~~~~~-~G~~V~g~V~~i~~~G~fV~~i~--~g~~Glih~SEl~- 187 (285)
T 3go5_A 123 EVDK-KDRIWGLLAYQEDFQRLAR----------PAYNNM-QNQNWPAIVYRLKLSGTFVYLPE--NNMLGFIHPSERY- 187 (285)
T ss_dssp EECT-TSCEEEEECCHHHHHHHCC----------CCCSCC-TTCEEEEEEEEEETTEEEEEETT--TTEEEEECGGGCS-
T ss_pred EECC-CCcEEEEehhhhhcchhhh----------hhhhCC-CCCEEEEEEEEEeCCcEEEEEeC--CCeEEEEEHHHcc-
Confidence 6788 6785 443 4678986 566788 9999999999999999999 997 5899999999998
Q ss_pred ccccCccccccCCCeEEEEEEEEeCCCCeEEEEEeecchhhHHHHHHhccccceEEEEEEecccccCCchHHHHHhhchh
Q 044309 125 RRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWP 204 (259)
Q Consensus 125 ~~v~~~~~~~kvGd~V~vkVi~vD~~~gkI~LSlK~~~~~~~~~~~~~~~~g~~v~g~V~~i~~~~G~fve~~~~~~sw~ 204 (259)
+.+++||+|+|+|+++|++++||+||+|+....+++..++ .++..+.++.| +++ |+|.|.|
T Consensus 188 -------~~l~~Gd~v~~~V~~id~~d~kI~LSlk~~~~~~~~~~a~---------~il~~L~~~~G-~l~--~~DkS~p 248 (285)
T 3go5_A 188 -------AEPRLGQVLDARVIGFREVDRTLNLSLKPRSFEMLENDAQ---------MILTYLESNGG-FMT--LNDKSSP 248 (285)
T ss_dssp -------SCCCTTCEEEEEEEEEETTTTEEEEECSCCCCCCCCHHHH---------HHHHHHHHTTT-EES--CCTTSCH
T ss_pred -------ccCCCCCEEEEEEEEEECCCCeEEEEeChhhhhccchHHH---------HHHHHHHhcCC-eec--cCCCCCH
Confidence 4689999999999999998999999999998776666553 23445655444 677 9999999
Q ss_pred --hHHhhcCHHHHHHHHhcC
Q 044309 205 --LYWKYGHAFEAFKIIVTD 222 (259)
Q Consensus 205 --l~~~~~~~~~~fk~a~~~ 222 (259)
|++.|+.++++||+|+|.
T Consensus 249 e~I~~~f~~SK~~FKrAiG~ 268 (285)
T 3go5_A 249 DDIKATFGISKGQFKKALGG 268 (285)
T ss_dssp HHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHhCcCHHHHHHHHHH
Confidence 999999999999999985
No 7
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.84 E-value=1.8e-21 Score=154.68 Aligned_cols=100 Identities=26% Similarity=0.410 Sum_probs=83.9
Q ss_pred hhhcccCccccCCCCchhhhhhhhcCCCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEcccccc-ccccCccccccCC
Q 044309 59 AKKLSEQPIMASHSPNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSR-RRIRSVSSLIKVG 137 (259)
Q Consensus 59 iK~l~~~pw~~~~~~~~~~R~~~~~~~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~-~~v~~~~~~~kvG 137 (259)
+|++..+||.. +...+. +|+++.|+|+++++||+||+|+ ++++||||+|++++ .++.++.+.+++|
T Consensus 13 ~k~~~~~p~~~----------~~~~~~-~G~~~~G~V~~v~~~G~FV~l~--~~~~Glvhisel~~~~~~~~~~~~~~vG 79 (115)
T 2khi_A 13 GLVPRGSHWVA----------IAKRYP-EGTKLTGRVTNLTDYGCFVEIE--EGVEGLVHVSEMDWTNKNIHPSKVVNVG 79 (115)
T ss_dssp --------CCC----------SSCSSC-SSCEEEEEEEEEETTEEEEECS--TTCEEEEETTSSSCSSTTCSSTTTCCTT
T ss_pred hhhcccCCHHH----------HhhcCC-CCCEEEEEEEEEECCEEEEEEC--CCCEEEEEHHHCCccccccCcccEECCC
Confidence 68899999997 555666 9999999999999999999997 58999999999998 4788899999999
Q ss_pred CeEEEEEEEEeCCCCeEEEEEeecchhhHHHHHH
Q 044309 138 RIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEE 171 (259)
Q Consensus 138 d~V~vkVi~vD~~~gkI~LSlK~~~~~~~~~~~~ 171 (259)
|.|.|+|+++|.++++|.||+|++.++||++..+
T Consensus 80 d~V~vkV~~vd~~~~rI~lslk~~~~~p~~~~~~ 113 (115)
T 2khi_A 80 DVVEVMVLDIDEERRRISLGLKQCKANPWQQFAE 113 (115)
T ss_dssp CEEEEEEEEEETTTTEEEECCCCCCSSCCCCCCC
T ss_pred CEEEEEEEEEECCCCEEEEEEEecCcCHHHHHHh
Confidence 9999999999998999999999999999986543
No 8
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.80 E-value=6.3e-20 Score=144.28 Aligned_cols=92 Identities=25% Similarity=0.260 Sum_probs=79.2
Q ss_pred hhhcccCccccCCCCchhhhhhhhcCCCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEccccccccccCccccccCCC
Q 044309 59 AKKLSEQPIMASHSPNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGR 138 (259)
Q Consensus 59 iK~l~~~pw~~~~~~~~~~R~~~~~~~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd 138 (259)
+||+.++||.. +...+. +|++|.|+|+++++||+||+|+ ++++||||+|++++.++.++.+.|++||
T Consensus 14 iKq~~~~p~~~----------~~~~~~-~G~iv~G~V~~v~~~G~fV~l~--~~~~Gll~~sel~~~~~~~~~~~~~vGd 80 (109)
T 2khj_A 14 LVPRGSHMFNN----------WVALNK-KGAIVTGKVTAVDAKGATVELA--DGVEGYLRASEASRDRVEDATLVLSVGD 80 (109)
T ss_dssp -------CHHH----------HTTTCC-SSSEEEEEEEEECSSCEEEECS--TTCBCCBCTTCCCSSSSSSGGGSCCTTC
T ss_pred hhhcccCHHHH----------HhhcCC-CCCEEEEEEEEEECCeEEEEEC--CCCEEEEEHHHcCcccccChhhccCCCC
Confidence 78999999997 666676 9999999999999999999997 5899999999999999999999999999
Q ss_pred eEEEEEEEEeCCCCeEEEEEeecch
Q 044309 139 IEPVMVLRVDKEKGYIDLSKRRVSE 163 (259)
Q Consensus 139 ~V~vkVi~vD~~~gkI~LSlK~~~~ 163 (259)
.|.|+|+++|+++++|.||+|++.+
T Consensus 81 ~V~v~V~~vd~~~~ki~LS~k~~~~ 105 (109)
T 2khj_A 81 EVEAKFTGVDRKNRAISLSVRAKDE 105 (109)
T ss_dssp EEEEEEEEEETTTTEEEEETTSSSS
T ss_pred EEEEEEEEEECCCCEEEEEEeecCh
Confidence 9999999999988899999998764
No 9
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=99.79 E-value=1.3e-19 Score=137.97 Aligned_cols=79 Identities=28% Similarity=0.460 Sum_probs=73.4
Q ss_pred CCCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEcc-ccccccccCccccccCCCeEEEEEEEEeCCCCeEEEEEeecc
Q 044309 84 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFS-ELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVS 162 (259)
Q Consensus 84 ~~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhis-Els~~~v~~~~~~~kvGd~V~vkVi~vD~~~gkI~LSlK~~~ 162 (259)
.+++|+++.|+|+ |++||+||+|.+|++++||||+| |++++++.++++.+ +||.|.|+|+++|+++++|+||+|++.
T Consensus 8 ~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~lslk~~~ 85 (88)
T 1luz_A 8 LPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVNYKRMC 85 (88)
T ss_dssp CCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEEEEEEC
T ss_pred CCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEECCCCEEEEEEeecC
Confidence 4458999999999 99999999998655899999999 99999999999999 999999999999999999999999987
Q ss_pred hh
Q 044309 163 EE 164 (259)
Q Consensus 163 ~~ 164 (259)
++
T Consensus 86 ~~ 87 (88)
T 1luz_A 86 RH 87 (88)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 10
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.4e-18 Score=139.06 Aligned_cols=96 Identities=16% Similarity=0.179 Sum_probs=83.0
Q ss_pred cccCccccCCCCchhhhhhhhcCCCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEccccccccccCccccccCCCeEE
Q 044309 62 LSEQPIMASHSPNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEP 141 (259)
Q Consensus 62 l~~~pw~~~~~~~~~~R~~~~~~~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~ 141 (259)
+.+++|.. +...+. +|++|.|+|++|++|||||+|.. .+.+||||+|++++.++.++.+.|++||.|.
T Consensus 8 ~~~~~~~~----------~~~~~~-vG~iv~G~V~~I~~fGaFV~l~g-~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~ 75 (119)
T 2cqo_A 8 MNSGRPET----------MENLPA-LYTIFQGEVAMVTDYGAFIKIPG-CRKQGLVHRTHMSSCRVDKPSEIVDVGDKVW 75 (119)
T ss_dssp SCCCCCCC----------SCCSCC-TTCEEEEEEEEEETTEEEEECTT-CSSCEEEEHHHHCSSCCSCHHHHCCTTCEEE
T ss_pred ccccchhh----------hhcccC-CCCEEEEEEEEEeCceEEEEECC-CcEEEEEEHHHCCcccccChhhcCCCCCEEE
Confidence 45677775 554444 99999999999999999999952 1469999999999999999999999999999
Q ss_pred EEEEEEeCCC--CeEEEEEeecchhhHHHH
Q 044309 142 VMVLRVDKEK--GYIDLSKRRVSEEDIQAC 169 (259)
Q Consensus 142 vkVi~vD~~~--gkI~LSlK~~~~~~~~~~ 169 (259)
|+|+++|.++ ++|.||+|++.+++|+..
T Consensus 76 VkV~~vd~~~~~~~i~LSlk~~~~~~~~~~ 105 (119)
T 2cqo_A 76 VKLIGREMKNDRIKVSLSMKVVNQGTGKDL 105 (119)
T ss_dssp EEEEEEEECSSCEEEEEESTTBCSSSCCBS
T ss_pred EEEEEEeccccCceEEEEEeecccCCcccc
Confidence 9999999754 799999999999888653
No 11
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.72 E-value=1.2e-17 Score=135.44 Aligned_cols=82 Identities=28% Similarity=0.433 Sum_probs=76.7
Q ss_pred cCCCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEccccccccccCccccccCCCeEEEEEEEEeCCCCeEEEEEeecc
Q 044309 83 RYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVS 162 (259)
Q Consensus 83 ~~~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~vD~~~gkI~LSlK~~~ 162 (259)
.+. +|++|.|+|++|++|||||+|. ++++||||+|++++.++.++.+.|++||.|.|+|+++|.++++|.||+|++.
T Consensus 4 ~~~-vG~iv~G~V~~i~~~G~FV~l~--~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk~~~ 80 (130)
T 2k4k_A 4 KFE-VGSVYTGKVTGLQAYGAFVALD--EETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIRATQ 80 (130)
T ss_dssp CCC-TTCEEEEEEEEEETTEEEEEEE--TTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESHHHH
T ss_pred cCC-CCCEEEEEEEEEeCCeEEEEEC--CCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEEEeecc
Confidence 344 8999999999999999999997 5899999999999999999999999999999999999998999999999998
Q ss_pred hhhHH
Q 044309 163 EEDIQ 167 (259)
Q Consensus 163 ~~~~~ 167 (259)
++|+.
T Consensus 81 ~~p~~ 85 (130)
T 2k4k_A 81 AAPEK 85 (130)
T ss_dssp HSCCC
T ss_pred cCccc
Confidence 87764
No 12
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.7e-17 Score=127.40 Aligned_cols=81 Identities=25% Similarity=0.331 Sum_probs=73.8
Q ss_pred CCCcEEEEEEEEEeCceEEEEEccCC-CEEEEEEcccc-ccccccCccccccCCCeEEEEEEEEeCCCCeEEEEEeecch
Q 044309 86 EVDMAVMIQVKNIADMGAYVSLLEYN-NIEGMILFSEL-SRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSE 163 (259)
Q Consensus 86 ~~G~iv~G~V~~I~~~GafV~L~ey~-~~eGllhisEl-s~~~v~~~~~~~kvGd~V~vkVi~vD~~~gkI~LSlK~~~~ 163 (259)
++|+++.|+|++|++||+||+|.++. +++||||+||+ ++.++.++.+.|++||.|.|+|+++|. ++|.||+|++.+
T Consensus 11 ~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~--~~i~LSlk~~~~ 88 (103)
T 2eqs_A 11 TIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG--TKTSLSMKDVDQ 88 (103)
T ss_dssp CTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET--TEEEEESTTBCT
T ss_pred CCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEEC--CeeEEEEeeccc
Confidence 38999999999999999999997432 79999999999 677888999999999999999999997 699999999999
Q ss_pred hhHHH
Q 044309 164 EDIQA 168 (259)
Q Consensus 164 ~~~~~ 168 (259)
+||..
T Consensus 89 ~~~~~ 93 (103)
T 2eqs_A 89 ETGED 93 (103)
T ss_dssp TTCCB
T ss_pred CCchh
Confidence 88864
No 13
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.70 E-value=1.2e-16 Score=118.92 Aligned_cols=71 Identities=21% Similarity=0.256 Sum_probs=66.1
Q ss_pred CCcEEEEEEEEEeCceEEEEEccCCCEEEEEEccccccccccCccccccCCCeEEEEEEEEeCCCCeEEEEEeecch
Q 044309 87 VDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSE 163 (259)
Q Consensus 87 ~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~vD~~~gkI~LSlK~~~~ 163 (259)
+|+++.|+|+++++||+||+|+ ++++||||+||+++.++ +.+++||.|.|+|+++|+++++|+||++++.+
T Consensus 5 ~G~iv~G~V~~v~~~G~fV~l~--~~~~Gllh~sel~~~~~----~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~~~~ 75 (80)
T 2k52_A 5 PGKFYKGVVTRIEKYGAFINLN--EQVRGLLRPRDMISLRL----ENLNVGDEIIVQAIDVRPEKREIDFKYIPLEH 75 (80)
T ss_dssp TTCEEEEEEEEEETTEEEEEEE--TTEEEEECGGGCSSCCG----GGCCTTCEEEEEEEEEETTTTEEEEEECSCC-
T ss_pred CCCEEEEEEEEEeCCEEEEEEC--CCCEEEEEHHHCCcccc----eeeCCCCEEEEEEEEEECCCCEEEEEEeeccc
Confidence 8999999999999999999998 58999999999998765 78999999999999999988999999998875
No 14
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=99.61 E-value=6.9e-16 Score=140.38 Aligned_cols=99 Identities=17% Similarity=0.040 Sum_probs=88.0
Q ss_pred CCcEEEEEEEEEe-CceEEEEEccCC-CEEEEEEccccccccccCccccccCCCeEEEEEEEEeCCCCeEEEEEeec-ch
Q 044309 87 VDMAVMIQVKNIA-DMGAYVSLLEYN-NIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRV-SE 163 (259)
Q Consensus 87 ~G~iv~G~V~~I~-~~GafV~L~ey~-~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~vD~~~gkI~LSlK~~-~~ 163 (259)
+|+++.|+|++++ +|||||+++ . +.+||||+||++|.+. ..+++||.+.|. +.+|+ ++||.||+|+. ..
T Consensus 69 ~G~~~~g~V~~v~~~~GaFVdiG--~~~~d~lvp~sel~~~~~----~~~~~Gd~v~v~-l~iD~-~~Ri~ls~k~~~~~ 140 (285)
T 3go5_A 69 QDQFGWGRVTEVRKDLGVFVDTG--LPDKEIVVSLDILPELKE----LWPKKGDQLYIR-LEVDK-KDRIWGLLAYQEDF 140 (285)
T ss_dssp SSSCEEEEEEEEETTTEEEEECS--CTTCCEEEEGGGSCSSGG----GSCCTTCEEEEE-EEECT-TSCEEEEECCHHHH
T ss_pred CCCEEEEEEEEEccCceEEEEEC--CCCcEEEEEHHHCCcccc----cccCCCCEEEEE-EEECC-CCcEEEEehhhhhc
Confidence 8999999999999 899999996 4 5899999999998644 346899999766 69998 79999999976 46
Q ss_pred hhHHHHHHhccccceEEEEEEecccccCCch
Q 044309 164 EDIQACEERYNKSKLVHSIMRHVAETLGIDL 194 (259)
Q Consensus 164 ~~~~~~~~~~~~g~~v~g~V~~i~~~~G~fv 194 (259)
++|......|+.|+.++|+|.++++ +|+|+
T Consensus 141 ~~~~~~~~~~~~G~~V~g~V~~i~~-~G~fV 170 (285)
T 3go5_A 141 QRLARPAYNNMQNQNWPAIVYRLKL-SGTFV 170 (285)
T ss_dssp HHHCCCCCSCCTTCEEEEEEEEEET-TEEEE
T ss_pred chhhhhhhhCCCCCEEEEEEEEEeC-CcEEE
Confidence 8898888899999999999999987 99999
No 15
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.52 E-value=8.6e-16 Score=154.62 Aligned_cols=88 Identities=24% Similarity=0.389 Sum_probs=0.0
Q ss_pred hhcCCCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEccccccccccCccccccCCCeEEEEEEEEeCCCCeEEEEEee
Q 044309 81 EARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRR 160 (259)
Q Consensus 81 ~~~~~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~vD~~~gkI~LSlK~ 160 (259)
...+. +|++|.|+|++|++||+||+|. ++++||||+||++++++.++.+.|++||.|.|+|+++|+ +++|+||+|+
T Consensus 632 ~~~~~-vG~v~~G~V~~I~~fGaFVel~--~g~eGLvHiSels~~rv~~~~d~~kvGD~V~VkVi~iD~-~grI~LS~K~ 707 (726)
T 4aid_A 632 TDEAE-VGKIYDGKVVKVVDFGAFVNFF--GAKDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFDD-RGKTKLSMKV 707 (726)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhc-CCcEEEEEEEEEeccEEEEEEC--CCcEEEEEHHHcCcccccCccccCCCCCEEEEEEEEECC-CCcEEEEEee
Confidence 33455 9999999999999999999997 689999999999999999999999999999999999998 7999999999
Q ss_pred cchhhHHHHHHh
Q 044309 161 VSEEDIQACEER 172 (259)
Q Consensus 161 ~~~~~~~~~~~~ 172 (259)
+.+++++...++
T Consensus 708 ~~~~~G~~~~~k 719 (726)
T 4aid_A 708 VDQETGEDLSKK 719 (726)
T ss_dssp ------------
T ss_pred cccCcchhhhhh
Confidence 999888776544
No 16
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.48 E-value=8.6e-16 Score=155.48 Aligned_cols=86 Identities=24% Similarity=0.396 Sum_probs=38.4
Q ss_pred CCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEcccc----ccccccCccccccCCCeEEEEEEEEeCCCCeEEEEEeec
Q 044309 86 EVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEL----SRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRV 161 (259)
Q Consensus 86 ~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEl----s~~~v~~~~~~~kvGd~V~vkVi~vD~~~gkI~LSlK~~ 161 (259)
++|++|.|+|+++++||+||+|. ++++||||+|++ +|+++.++++.+++||.|+|+|+++|+ +++|+||+|++
T Consensus 666 ~vG~i~~G~V~~i~~fGaFV~l~--~g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~vd~-~grI~LS~k~~ 742 (757)
T 1e3p_A 666 EVGERILGSVVKTTTFGAFVSLL--PGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDS-RGKLSLIPVIE 742 (757)
T ss_dssp -------CBEEECC-CSCEECCC-----CCCCC-------------------CCSSCBCCCCCCCCCS-SCC--------
T ss_pred ccccEEEEEEEEccccEEEEEEc--CCcEEEEEhHHhccccCCCcccCcccccCCCCEEEEEEEEECC-CCCEEEEEecC
Confidence 39999999999999999999997 689999999999 999999999999999999999999998 89999999999
Q ss_pred chhhHHHHHHhcc
Q 044309 162 SEEDIQACEERYN 174 (259)
Q Consensus 162 ~~~~~~~~~~~~~ 174 (259)
.++||....++|.
T Consensus 743 ~~~pw~~~~~~~~ 755 (757)
T 1e3p_A 743 GEEAASDEKKDDA 755 (757)
T ss_dssp -------------
T ss_pred CCCchhhhhhccc
Confidence 9999998766554
No 17
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=99.45 E-value=2.7e-13 Score=115.38 Aligned_cols=89 Identities=13% Similarity=0.184 Sum_probs=78.6
Q ss_pred cCCCCCcEEEEEEEEEeCceEEEEEccC--------CCEEEEEEccccccccccCccccccCCCeEEEEEEEEeCCCCeE
Q 044309 83 RYPEVDMAVMIQVKNIADMGAYVSLLEY--------NNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYI 154 (259)
Q Consensus 83 ~~~~~G~iv~G~V~~I~~~GafV~L~ey--------~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~vD~~~gkI 154 (259)
..|+ |++|.|+|++|.++||||+|..+ .+.+|+||+||+++.++.++++.|++||.|.|+|++ +++
T Consensus 54 y~p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~-----~~i 127 (179)
T 3m7n_A 54 EIVK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG-----DNL 127 (179)
T ss_dssp CCCT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE-----TTT
T ss_pred ccCC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC-----CeE
Confidence 4687 99999999999999999999721 079999999999999999999999999999999997 789
Q ss_pred EEEEeecchhhHHHHHHhccccceEEEEEEecccccCCch
Q 044309 155 DLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDL 194 (259)
Q Consensus 155 ~LSlK~~~~~~~~~~~~~~~~g~~v~g~V~~i~~~~G~fv 194 (259)
.||+|+... |+|...+.++|..|
T Consensus 128 ~LS~k~~~l-----------------Gvv~a~~~~~g~~m 150 (179)
T 3m7n_A 128 RLSTKEEEM-----------------GVLRALCSNCKTEM 150 (179)
T ss_dssp EEECCSTTC-----------------EEEECBCTTTCCBC
T ss_pred EEEEecCCC-----------------CEEEecccccCCce
Confidence 999997543 88888886688765
No 18
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=99.45 E-value=4e-13 Score=114.40 Aligned_cols=81 Identities=16% Similarity=0.315 Sum_probs=69.9
Q ss_pred CCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEcccccccccc-----------CccccccCCCeEEEEEEEEeCCCC-
Q 044309 85 PEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIR-----------SVSSLIKVGRIEPVMVLRVDKEKG- 152 (259)
Q Consensus 85 ~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~~v~-----------~~~~~~kvGd~V~vkVi~vD~~~g- 152 (259)
|.+|+++.|+|+++++||+||+|. +.+||+|+|++++.++. ++++.+++||.|.|+|+++|.+++
T Consensus 79 ~~~Gev~~G~V~~v~~~G~fV~l~---~~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~ 155 (187)
T 1go3_E 79 PEMYELIEGEVVDVVEFGSFVRLG---PLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAER 155 (187)
T ss_dssp CCTTCEEEEEEEEEETTEEEEECS---SSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC--
T ss_pred cCCCCEEEEEEEEEeCcEEEEEEc---CccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccCC
Confidence 448999999999999999999995 59999999999987765 788999999999999999998644
Q ss_pred ----eEEEEEeecc--hhhHHH
Q 044309 153 ----YIDLSKRRVS--EEDIQA 168 (259)
Q Consensus 153 ----kI~LSlK~~~--~~~~~~ 168 (259)
+|.||+++.. ..+|-+
T Consensus 156 p~~~~I~lS~k~~~LG~~~w~~ 177 (187)
T 1go3_E 156 KRGSKIALTMRQPYLGKLEWIE 177 (187)
T ss_dssp ---CEEEEECCSTTCEEHHHHH
T ss_pred CCccEEEEEEcCCCCCcHHHHh
Confidence 9999999854 445543
No 19
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.44 E-value=2e-13 Score=108.56 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=65.7
Q ss_pred cCCCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEcccc-ccccccCccccccCCCeEEEEEEEEeCCCCeEEEEEeec
Q 044309 83 RYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEL-SRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRV 161 (259)
Q Consensus 83 ~~~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEl-s~~~v~~~~~~~kvGd~V~vkVi~vD~~~gkI~LSlK~~ 161 (259)
.+. +|+++.|+|++|++||+||+|.. ++.+|++|.++. +|.++.++++.|++||.|.|+|+++|.++++|.||+++.
T Consensus 18 ~l~-~G~i~~G~V~~v~~fG~fV~l~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~i~Lslk~~ 95 (119)
T 1wi5_A 18 ALK-PGMLLTGTVSSLEDHGYLVDIGV-DGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHS 95 (119)
T ss_dssp TCC-TTCEEEEEEEEECSSEEEEECCC-SSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTTSCEEEEECCCC
T ss_pred cCC-CCCEEEEEEEEEeCceEEEEECC-CCeEEEEEEecccccccccCccCEeCCCCEEEEEEEEEeCCCCEEEEEEchh
Confidence 455 99999999999999999999962 367777666664 345566788999999999999999999889999999976
Q ss_pred c
Q 044309 162 S 162 (259)
Q Consensus 162 ~ 162 (259)
.
T Consensus 96 ~ 96 (119)
T 1wi5_A 96 E 96 (119)
T ss_dssp C
T ss_pred h
Confidence 4
No 20
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.44 E-value=9.1e-15 Score=147.46 Aligned_cols=85 Identities=31% Similarity=0.514 Sum_probs=0.0
Q ss_pred hcCCCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEccccccccccCccccccCCCeEEEEEEEEeCCCCeEEEEEeec
Q 044309 82 ARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRV 161 (259)
Q Consensus 82 ~~~~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~vD~~~gkI~LSlK~~ 161 (259)
..+. +|++|.|+|+++.+||+||+|. ++.+||||+|+++++++.++++.+++||.|+|+|+++|+ +++|+||+|++
T Consensus 623 ~~~~-vG~i~~G~V~~i~~fGaFVel~--~g~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkVi~vd~-~grI~LS~k~~ 698 (723)
T 3cdi_A 623 AEIE-VGRVYTGKVTRIVDFGAFVAIG--GGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEA 698 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhh-cCcEEEEEEEEEecceEEEEeC--CCceEEEEHHHcCCccccCcccccCCCCEEEEEEEEECC-CCcEEEEEEec
Confidence 3444 9999999999999999999997 589999999999999999999999999999999999998 89999999999
Q ss_pred chhhHHHHH
Q 044309 162 SEEDIQACE 170 (259)
Q Consensus 162 ~~~~~~~~~ 170 (259)
.++++....
T Consensus 699 ~~~~g~~~~ 707 (723)
T 3cdi_A 699 TEQSQPAAA 707 (723)
T ss_dssp ---------
T ss_pred cCCCCcccC
Confidence 888887653
No 21
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=99.40 E-value=7.8e-13 Score=115.24 Aligned_cols=93 Identities=19% Similarity=0.244 Sum_probs=79.4
Q ss_pred CCCCCcEEEEEEEEEeCceEEEEEccC------CCEEEEEEcccccccccc--CccccccCCCeEEEEEEEEeCCCCeEE
Q 044309 84 YPEVDMAVMIQVKNIADMGAYVSLLEY------NNIEGMILFSELSRRRIR--SVSSLIKVGRIEPVMVLRVDKEKGYID 155 (259)
Q Consensus 84 ~~~~G~iv~G~V~~I~~~GafV~L~ey------~~~eGllhisEls~~~v~--~~~~~~kvGd~V~vkVi~vD~~~gkI~ 155 (259)
.|++||+|.|+|++++++||||+|..+ .+.+|+||+||+++.++. ++++.|++||.|.|+|++++..++++.
T Consensus 78 ~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i~ 157 (209)
T 2nn6_I 78 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYL 157 (209)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEEE
T ss_pred CCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeEE
Confidence 466999999999999999999998421 367999999999998888 899999999999999999998777999
Q ss_pred EEEeecchhhHHHHHHhccccceEEEEEEecccccCCch
Q 044309 156 LSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDL 194 (259)
Q Consensus 156 LSlK~~~~~~~~~~~~~~~~g~~v~g~V~~i~~~~G~fv 194 (259)
||+|+... |+|...++. |..|
T Consensus 158 LS~k~~~l-----------------GVv~A~c~~-g~~m 178 (209)
T 2nn6_I 158 LTTAENEL-----------------GVVVAHSES-GIQM 178 (209)
T ss_dssp EECCSSSC-----------------EECCCBCSS-SCBC
T ss_pred EEEecCCC-----------------cEEEEEcCC-CCEE
Confidence 99998654 777777764 5544
No 22
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=99.37 E-value=1.8e-12 Score=109.80 Aligned_cols=80 Identities=20% Similarity=0.300 Sum_probs=67.3
Q ss_pred CCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEccccccccc-----------cCccccccCCCeEEEEEEEEeCC---
Q 044309 85 PEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRI-----------RSVSSLIKVGRIEPVMVLRVDKE--- 150 (259)
Q Consensus 85 ~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~~v-----------~~~~~~~kvGd~V~vkVi~vD~~--- 150 (259)
|.+|+++.|+|+++++||+||++. ..+||+|+|+++++++ ++..+.+++||.|+|||+++|.+
T Consensus 79 p~~Gev~~G~V~~v~~~G~fv~l~---~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~~~~~~ 155 (180)
T 4ayb_E 79 PVVQEVVEGEVLQVDNYGVFVNLG---PMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVTG 155 (180)
T ss_dssp CCTTCEEEEEEEEEETTEEEEECS---SSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEECC----
T ss_pred ccCCCEEEEEEeeeccceEEEEEC---CccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEeCCCCc
Confidence 348999999999999999999995 6899999999998766 56788999999999999999863
Q ss_pred -CCeEEEEEeecc--hhhHH
Q 044309 151 -KGYIDLSKRRVS--EEDIQ 167 (259)
Q Consensus 151 -~gkI~LSlK~~~--~~~~~ 167 (259)
.++|.||+|+.. ..+|-
T Consensus 156 ~~~rI~ls~k~~gLG~~~W~ 175 (180)
T 4ayb_E 156 RLPRIALTMRQPYLGKLEWI 175 (180)
T ss_dssp ---CEEEECCSTTCEEHHHH
T ss_pred ccCcEEEEcCCCCCCCChhH
Confidence 468999999843 44554
No 23
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=99.35 E-value=1e-12 Score=138.45 Aligned_cols=77 Identities=10% Similarity=0.134 Sum_probs=72.2
Q ss_pred hcCCCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEcccccccc-ccCccccccCCCeEEEEEEEEeCCCCeEEEEEee
Q 044309 82 ARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRR-IRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRR 160 (259)
Q Consensus 82 ~~~~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~~-v~~~~~~~kvGd~V~vkVi~vD~~~gkI~LSlK~ 160 (259)
+.+. +|++|.|+|++|++|||||+|+ +|++||||+|++++.+ +.++.+.|++||.|.|+|++||.++++|.||+|.
T Consensus 898 ~~l~-~G~iv~G~V~~V~~fGaFV~L~--~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~ 974 (1219)
T 3psi_A 898 KTFF-KGSIIPVRVERFWHNDIICTTN--SEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLD 974 (1219)
T ss_dssp TTSC-TTCEEEEEEEEECSSCEEEECT--TSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEECCH
T ss_pred hhCC-CCCEEEEEEEEEecceEEEEeC--CCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEecH
Confidence 4566 8999999999999999999997 6899999999999998 8999999999999999999999999999999986
Q ss_pred c
Q 044309 161 V 161 (259)
Q Consensus 161 ~ 161 (259)
.
T Consensus 975 ~ 975 (1219)
T 3psi_A 975 H 975 (1219)
T ss_dssp H
T ss_pred H
Confidence 4
No 24
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=99.32 E-value=6e-13 Score=135.16 Aligned_cols=77 Identities=26% Similarity=0.396 Sum_probs=72.0
Q ss_pred cCCCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEccccccccccCccccccCCCeEEEEEEEEeCCCCeEEEEEeecc
Q 044309 83 RYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVS 162 (259)
Q Consensus 83 ~~~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~vD~~~gkI~LSlK~~~ 162 (259)
.+. +|++|.|+|++|++||+||+|+ .+.+||||+|++++.++.++.+.|++||.|.|+|+++|.++++|+||+|...
T Consensus 651 ~l~-vG~iv~G~V~~V~~fGaFV~l~--~~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~LSlk~~~ 727 (785)
T 3bzc_A 651 DLK-PGMVLEGVVTNVTNFGAFVDIG--VHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMRMSD 727 (785)
T ss_dssp TCC-TTCBCCCEEEEEETTEEEEECS--SSSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEETTTTEEEECCSSCC
T ss_pred hcC-CCCEEEEEEEEEecCCeEEEeC--CCcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEECCCCEEEEEEecCC
Confidence 355 8999999999999999999997 5899999999999999999999999999999999999999999999999643
No 25
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=99.31 E-value=3.4e-12 Score=111.71 Aligned_cols=89 Identities=13% Similarity=0.025 Sum_probs=64.9
Q ss_pred CCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEccccccccccCc----------cccccCCCeEEEEEEEEeCCCC--
Q 044309 85 PEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSV----------SSLIKVGRIEPVMVLRVDKEKG-- 152 (259)
Q Consensus 85 ~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~~v~~~----------~~~~kvGd~V~vkVi~vD~~~g-- 152 (259)
|.+|+++.|+|+++++||+||+|+ + .+||||+|+|++.+.-++ ++.+++||.|+|+|+++|.+++
T Consensus 81 p~vGev~~G~V~~vt~fG~FVelg--~-~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~~~~i 157 (215)
T 2b8k_G 81 PFKGEVVDGTVVSCSQHGFEVQVG--P-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSI 157 (215)
T ss_dssp CCTTEEEEEEEEEEETTEEEEECT--T-SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEETTEE
T ss_pred cCCCCEEEEEEEEEecceEEEEec--C-cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEEcCCCcc
Confidence 348999999999999999999996 4 999999999986433222 2679999999999999998764
Q ss_pred -eEEEEEeecchhhHHHHHHhccccc
Q 044309 153 -YIDLSKRRVSEEDIQACEERYNKSK 177 (259)
Q Consensus 153 -kI~LSlK~~~~~~~~~~~~~~~~g~ 177 (259)
+|. |+++....++.....+|+.+-
T Consensus 158 ~~Ig-Smk~~~LG~~~~~~~~~~~~~ 182 (215)
T 2b8k_G 158 HAIG-SIKEDYLGAISHEKRRWKKNF 182 (215)
T ss_dssp EEEE-ECCSTTCEEC-----------
T ss_pred EEEE-EcCCCCCCCcchhhHHHHhhh
Confidence 677 898876666766555665443
No 26
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=99.26 E-value=4.7e-13 Score=139.15 Aligned_cols=78 Identities=10% Similarity=0.135 Sum_probs=0.0
Q ss_pred hcCCCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEcccccccc-ccCccccccCCCeEEEEEEEEeCCCCeEEEEEee
Q 044309 82 ARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRR-IRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRR 160 (259)
Q Consensus 82 ~~~~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~~-v~~~~~~~kvGd~V~vkVi~vD~~~gkI~LSlK~ 160 (259)
+.+. +|++|.|+|++|++|||||+|+ +|++||||+|++++.+ +.++.+.|++||.|.|+|++||.++++|.||+|.
T Consensus 901 ~~l~-~G~iv~G~V~~V~~fGaFV~L~--~gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~ 977 (1030)
T 3psf_A 901 KTFF-KGSIIPVRVERFWHNDIICTTN--SEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLD 977 (1030)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhc-CCCEEEEEEEEEccCeEEEEeC--CCcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEech
Confidence 4555 8999999999999999999997 6899999999999988 8999999999999999999999989999999996
Q ss_pred cc
Q 044309 161 VS 162 (259)
Q Consensus 161 ~~ 162 (259)
..
T Consensus 978 ~d 979 (1030)
T 3psf_A 978 HD 979 (1030)
T ss_dssp --
T ss_pred HH
Confidence 43
No 27
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=99.23 E-value=2.5e-11 Score=102.15 Aligned_cols=65 Identities=11% Similarity=-0.006 Sum_probs=54.0
Q ss_pred CCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEccccccccc----cCc------cccccCCCeEEEEEEEEeCCCC
Q 044309 85 PEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRI----RSV------SSLIKVGRIEPVMVLRVDKEKG 152 (259)
Q Consensus 85 ~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~~v----~~~------~~~~kvGd~V~vkVi~vD~~~g 152 (259)
|.+|+++.|+|+++++||+||+|. + .+||+|+|++++.+. .++ ++.+++||.|+|+|+++|.+++
T Consensus 81 ~~~Gev~~G~V~~v~~fG~FV~l~--~-~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~ 155 (171)
T 1y14_B 81 PFKGEVVDGTVVSCSQHGFEVQVG--P-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVS 155 (171)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEET--T-EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEETT
T ss_pred CCCCCEEEEEEEEEecCEEEEEec--C-eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEEcCCC
Confidence 338999999999999999999996 5 999999999975422 111 2679999999999999998654
No 28
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=99.22 E-value=1.9e-11 Score=109.20 Aligned_cols=75 Identities=20% Similarity=0.220 Sum_probs=68.6
Q ss_pred CCCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEccccccccc---cCccccccCCCeEEEEEEEEeCCCCeEEEEEee
Q 044309 84 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRI---RSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRR 160 (259)
Q Consensus 84 ~~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~~v---~~~~~~~kvGd~V~vkVi~vD~~~gkI~LSlK~ 160 (259)
.|++||+|.|+|+++.++||||+|. .+.+|+||+|++++.+. .++++.|++||.|.|+|++++. ++++.||+|+
T Consensus 71 ~p~~GDiV~G~V~~v~~~ga~VdI~--~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~-~~~i~LS~r~ 147 (251)
T 2je6_I 71 YPKINDIVIGLVEDVEIYGWVVDIK--APYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDR-SIDPVLSVKG 147 (251)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECS--SSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEET-TEEEEEECCS
T ss_pred CCCCCCEEEEEEEEEeCceEEEEcC--CCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECC-CCcEEEEEcc
Confidence 5679999999999999999999997 47999999999998777 8889999999999999999997 5899999985
Q ss_pred c
Q 044309 161 V 161 (259)
Q Consensus 161 ~ 161 (259)
.
T Consensus 148 ~ 148 (251)
T 2je6_I 148 K 148 (251)
T ss_dssp T
T ss_pred c
Confidence 4
No 29
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=99.22 E-value=3.3e-11 Score=101.40 Aligned_cols=72 Identities=13% Similarity=0.098 Sum_probs=58.5
Q ss_pred CCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEccccccccc----c--------CccccccCCCeEEEEEEEEeCCCC
Q 044309 85 PEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRI----R--------SVSSLIKVGRIEPVMVLRVDKEKG 152 (259)
Q Consensus 85 ~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~~v----~--------~~~~~~kvGd~V~vkVi~vD~~~g 152 (259)
|.+|+++.|+|+++++||+||+|. ..+||||+|++++.+. . +.++.+++||.|+|+|+++|.+++
T Consensus 79 ~~~Gev~~G~V~~v~~fG~fV~l~---~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~ 155 (172)
T 2c35_B 79 PFKGEVVDAVVTQVNKVGLFTEIG---PMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKN 155 (172)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEET---TEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEETT
T ss_pred CCCCCEEEEEEEEEeCCEEEEEEC---CEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcCCC
Confidence 348999999999999999999995 5789999999985422 2 125679999999999999998655
Q ss_pred ---eEEEEEee
Q 044309 153 ---YIDLSKRR 160 (259)
Q Consensus 153 ---kI~LSlK~ 160 (259)
++. |+++
T Consensus 156 ~~~~ig-sm~~ 165 (172)
T 2c35_B 156 DIFAIG-SLMD 165 (172)
T ss_dssp EEEEEE-ECCS
T ss_pred CcEEEE-EecC
Confidence 444 6665
No 30
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=99.18 E-value=6.2e-11 Score=104.54 Aligned_cols=75 Identities=19% Similarity=0.243 Sum_probs=68.1
Q ss_pred CCCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEccccccc-cccCccccccCCCeEEEEEEEEeCCCCeEEEEEeec
Q 044309 84 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRR-RIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRV 161 (259)
Q Consensus 84 ~~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~-~v~~~~~~~kvGd~V~vkVi~vD~~~gkI~LSlK~~ 161 (259)
.|++||+|.|+|+++.++||||+|. ...+|+||+|+++.. ...++++.|++||.|.|+|++++. ++++.||+|+.
T Consensus 54 ~p~~GDiV~G~V~~v~~~~a~V~I~--~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~-~~~i~LS~r~~ 129 (229)
T 2ba0_A 54 TPSVGDVVIGIIREVAANGWAVDIY--SPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDP-KMKVTLTMKDR 129 (229)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECS--SSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECT-TCCEEEECCSS
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEeC--CCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECC-CCcEEEEEccc
Confidence 5679999999999999999999997 468999999999974 678899999999999999999997 58999999864
No 31
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=99.14 E-value=7.2e-11 Score=104.37 Aligned_cols=75 Identities=19% Similarity=0.242 Sum_probs=66.9
Q ss_pred CCCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEccccccc----cccCccccccCCCeEEEEEEEEeCCCCeEEEEEe
Q 044309 84 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRR----RIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKR 159 (259)
Q Consensus 84 ~~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~----~v~~~~~~~kvGd~V~vkVi~vD~~~gkI~LSlK 159 (259)
.|++||+|.|+|+++.++||||+|. .+.+|+||+|+++.+ ...++++.|++||.|.|+|++++. .+++.||+|
T Consensus 63 ~p~~GDiV~G~V~~v~~~~~~V~I~--~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~-~~~i~LS~k 139 (235)
T 2z0s_A 63 VPQAGDVVIGLIQSVGIMNWFVDIN--SPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDK-TRSPLLTVQ 139 (235)
T ss_dssp CCCTTCCEEEEEEEECSSEEEEECS--SSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECT-TSCEEEECC
T ss_pred CCCCCCEEEEEEEEEeCCeEEEEeC--CCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECC-CCcEEEEEe
Confidence 5679999999999999999999997 479999999999873 457788999999999999999997 579999998
Q ss_pred ec
Q 044309 160 RV 161 (259)
Q Consensus 160 ~~ 161 (259)
+.
T Consensus 140 ~~ 141 (235)
T 2z0s_A 140 GE 141 (235)
T ss_dssp SS
T ss_pred cc
Confidence 54
No 32
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=99.09 E-value=4.8e-11 Score=100.74 Aligned_cols=72 Identities=11% Similarity=0.125 Sum_probs=59.3
Q ss_pred CCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEccccccccc----------cCccccccCCCeEEEEEEEEeCCCC--
Q 044309 85 PEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRI----------RSVSSLIKVGRIEPVMVLRVDKEKG-- 152 (259)
Q Consensus 85 ~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~~v----------~~~~~~~kvGd~V~vkVi~vD~~~g-- 152 (259)
|.+|+++.|+|+++++||+||+|+ ..+||+|+|++++.+. ++..+.+++||.|+|||+++|.+.+
T Consensus 82 p~~Gev~~G~V~~v~~fG~FV~l~---~~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~~~~ 158 (172)
T 3h0g_G 82 PFRGEVVDAIVTTVNKMGFFANIG---PLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDATEI 158 (172)
T ss_dssp CCTTCEEECCCCEEETTEEECCBT---TBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESSSCE
T ss_pred cCCCCEEEEEEEEEEcceEEEEeC---CeEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEECCCCCc
Confidence 338999999999999999999995 5789999999976433 3345789999999999999998764
Q ss_pred -eEEEEEee
Q 044309 153 -YIDLSKRR 160 (259)
Q Consensus 153 -kI~LSlK~ 160 (259)
+|. |+|+
T Consensus 159 ~~Ig-tm~~ 166 (172)
T 3h0g_G 159 FAIA-TMKE 166 (172)
T ss_dssp EEEE-ECCS
T ss_pred eEEE-EcCC
Confidence 455 6654
No 33
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=98.96 E-value=2.1e-09 Score=107.32 Aligned_cols=81 Identities=19% Similarity=0.176 Sum_probs=67.4
Q ss_pred hhhhhhhhcCCCCCc--EEEEEEEEEeCceEEEEEccCCCEEEEEEcccccc--ccc----------cCccccccCCCeE
Q 044309 75 LECRMYEARYPEVDM--AVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSR--RRI----------RSVSSLIKVGRIE 140 (259)
Q Consensus 75 ~~~R~~~~~~~~~G~--iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~--~~v----------~~~~~~~kvGd~V 140 (259)
..|+++... +|+ ++.|+|++|++||+||+|.+ .|++||||+|+++. ++. .+....+++||.|
T Consensus 549 ~~~~~l~~~---vGe~~~f~g~V~~V~~~G~fV~L~~-~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V 624 (644)
T 2id0_A 549 LYARFLKDK---AGTDTRFAAEIVDISRGGMRVRLVD-NGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVI 624 (644)
T ss_dssp HHHHHHGGG---TTSCCCEEEEEEEEETTEEEEEETT-TCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEE
T ss_pred HHHHHhhhc---cCCCceEEEEEEEEeCCceEEEEcC-CcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEE
Confidence 356666654 799 99999999999999999976 58999999999973 221 1445779999999
Q ss_pred EEEEEEEeCCCCeEEEEEe
Q 044309 141 PVMVLRVDKEKGYIDLSKR 159 (259)
Q Consensus 141 ~vkVi~vD~~~gkI~LSlK 159 (259)
+|+|.++|.++++|++++-
T Consensus 625 ~VkV~~vd~~~~~I~~~l~ 643 (644)
T 2id0_A 625 DVTIAEVRMETRSIIARPV 643 (644)
T ss_dssp EEEEEEEETTTTEEEEEEC
T ss_pred EEEEEEEeCCCCEEEEEEc
Confidence 9999999999999999874
No 34
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=98.77 E-value=4.1e-08 Score=91.24 Aligned_cols=66 Identities=20% Similarity=0.162 Sum_probs=57.8
Q ss_pred CCcEEEEEEEEEeCceEEEEEccCCCEEEEEEccccccccccCccccccCCCeEEEEEEEEeCCCC--eEEEEEeec
Q 044309 87 VDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKG--YIDLSKRRV 161 (259)
Q Consensus 87 ~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~vD~~~g--kI~LSlK~~ 161 (259)
+|++++|+|.+++++|+||++ ++.+|+||.+|++ +++.|++||+|+|.|++++.+++ +|.||++..
T Consensus 134 ~GeIV~G~V~ri~~~~v~VDl---Gk~EgiLp~sE~i------p~E~~~vGD~Vkv~V~~V~~~~kg~~I~LSRt~p 201 (344)
T 1hh2_P 134 KGTVTTAEVIRVMGEWADIRI---GKLETRLPKKEWI------PGEEIKAGDLVKVYIIDVVKTTKGPKILVSRRVP 201 (344)
T ss_dssp TTCEEEEEEEEECSSEEEEEE---TTEEEEEEGGGSC------TTCCCCTTCEEEEEEEEEEEETTEEEEEEESSSH
T ss_pred CCCEEEEEEEEEecCcEEEEe---CCeEEEEeHHHcC------CCcCCCCCCEEEEEEEEEEcCCCCcEEEEEeecc
Confidence 799999999999999999999 4899999999997 56789999999999999997544 666666643
No 35
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=98.71 E-value=2.3e-08 Score=86.47 Aligned_cols=62 Identities=6% Similarity=0.063 Sum_probs=54.2
Q ss_pred CCcEEEEEEEEEeCceEEEEEccCCCEEEEEEccccccccc-------------------cCccccccCCCeEEEEEEEE
Q 044309 87 VDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRI-------------------RSVSSLIKVGRIEPVMVLRV 147 (259)
Q Consensus 87 ~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~~v-------------------~~~~~~~kvGd~V~vkVi~v 147 (259)
+|+++.|+|++++++|+||+|+ .++|++|++++.++.. ++.+..+++||.|+|||.++
T Consensus 81 ~GEv~~G~Vs~vt~~GifV~lg---~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v 157 (203)
T 3ayh_B 81 RGEVMLGKIKSCSEEGIRVTIS---FFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESE 157 (203)
T ss_dssp TTCEEEEEEEEEETTEEEEECS---SCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEEEEE
T ss_pred CCCEEEEEEEEEeccEEEEEEe---CceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEEEEE
Confidence 7999999999999999999994 6899999999976543 45567799999999999999
Q ss_pred eCCC
Q 044309 148 DKEK 151 (259)
Q Consensus 148 D~~~ 151 (259)
+..+
T Consensus 158 ~~~~ 161 (203)
T 3ayh_B 158 DFVD 161 (203)
T ss_dssp EECC
T ss_pred Eccc
Confidence 8753
No 36
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=98.68 E-value=3.1e-08 Score=100.60 Aligned_cols=79 Identities=16% Similarity=0.069 Sum_probs=57.6
Q ss_pred hhhhhhhcCCCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEccccc--cccc-----------cC----ccccccCCC
Q 044309 76 ECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELS--RRRI-----------RS----VSSLIKVGR 138 (259)
Q Consensus 76 ~~R~~~~~~~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls--~~~v-----------~~----~~~~~kvGd 138 (259)
.|+++... + +.+.|+|++|+++|+||.|.+ .+++|+||+|+++ ..+. .+ ....|++||
T Consensus 662 ~~~~l~~~---~-~~~~g~V~~V~~~G~fV~l~~-~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD 736 (760)
T 2vnu_D 662 VGQVMRNN---E-STETGYVIKVFNNGIVVLVPK-FGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFD 736 (760)
T ss_dssp HHHHHHTC---C-SEEEEEEEEEETTEEEEEETT-TTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTC
T ss_pred HHHHhhcC---c-eEEEEEEEEEECCeEEEEEeC-CCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCC
Confidence 45555544 4 799999999999999999986 3799999999996 3321 22 257899999
Q ss_pred eEEEEEEEEeCC---CCeEEEEEe
Q 044309 139 IEPVMVLRVDKE---KGYIDLSKR 159 (259)
Q Consensus 139 ~V~vkVi~vD~~---~gkI~LSlK 159 (259)
.|+|+|+++|.+ +++|+||+|
T Consensus 737 ~V~VkV~~vd~~~~~~~kI~lslk 760 (760)
T 2vnu_D 737 KVEVQVRSVMDPITSKRKAELLLK 760 (760)
T ss_dssp EEEEEEC--------CCEEEC---
T ss_pred EEEEEEEEEECccccCCcEEEEeC
Confidence 999999999987 699999986
No 37
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=98.65 E-value=2.7e-08 Score=87.07 Aligned_cols=64 Identities=13% Similarity=0.019 Sum_probs=54.1
Q ss_pred CCcEEEEEEEEEeCceEEEEEccCCCEEEEEEccccccccc--------------cCccccccCCCeEEEEEEEEeCCCC
Q 044309 87 VDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRI--------------RSVSSLIKVGRIEPVMVLRVDKEKG 152 (259)
Q Consensus 87 ~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~~v--------------~~~~~~~kvGd~V~vkVi~vD~~~g 152 (259)
+|+++.|+|++++++|+||+|. +.++|++|++++..+.. ++.+..+++||.|+|||.++|..++
T Consensus 81 vGEv~~G~Is~Vt~fGifVeL~--g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~~~~~ 158 (218)
T 2ckz_B 81 LGEIVTGWISKCTAEGIKVSLL--GIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDV 158 (218)
T ss_dssp TTCEEEEEEEEEETTEEEEECT--TSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEEECCC
T ss_pred CCCEEEEEEEEEccCcEEEEcc--CccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEEcccC
Confidence 7999999999999999999996 45899999999975432 3346779999999999999998654
No 38
>1yz7_A Probable translation initiation factor 2 alpha subunit; helical domain, alpha-beta domain; 2.26A {Pyrococcus abyssi}
Probab=98.59 E-value=2.2e-09 Score=92.06 Aligned_cols=69 Identities=22% Similarity=0.324 Sum_probs=62.3
Q ss_pred HHHHHhccccceEEEEEEecccccCCchHHHHHhhchhhHHhhcCHHHHHHHHhcCcchhhccCCCcccc
Q 044309 167 QACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYWKYGHAFEAFKIIVTDPDSVLNSLTREVKE 236 (259)
Q Consensus 167 ~~~~~~~~~g~~v~g~V~~i~~~~G~fve~~~~~~sw~l~~~~~~~~~~fk~a~~~~~~~l~~l~~~~~~ 236 (259)
.+..+.|+..+.++.++..+++++|..++++|..++|||+++|||+|+||+.|+.+++++|.++ +++..
T Consensus 4 r~Ki~~wk~~qkv~sil~~vAek~~~~~Eely~~i~w~L~~kyG~~ydaFk~av~~~~~vl~~l-ip~~~ 72 (188)
T 1yz7_A 4 KAKLQEFKRAQKAENLLKLAAEKLGKDFETAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLKGH-VPDEW 72 (188)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTHHHHHHHHSSHHHHHHHHHHHCGGGSBTT-BCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHhcChHHHHHh-CCHHH
Confidence 4566888999999999999999999999999999999999999999999999999777899999 86543
No 39
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=98.58 E-value=1.1e-07 Score=92.75 Aligned_cols=62 Identities=13% Similarity=0.220 Sum_probs=55.2
Q ss_pred CCcEEEEEEEEEeCc--eEEEEEccCCCEEEEEEccccccccc---------cCccccccCCCeEEEEEEEEeCC
Q 044309 87 VDMAVMIQVKNIADM--GAYVSLLEYNNIEGMILFSELSRRRI---------RSVSSLIKVGRIEPVMVLRVDKE 150 (259)
Q Consensus 87 ~G~iv~G~V~~I~~~--GafV~L~ey~~~eGllhisEls~~~v---------~~~~~~~kvGd~V~vkVi~vD~~ 150 (259)
+|++|.|+|++|.++ ||||+++ .+..||||+||+++.++ .++.+.+++||.|.|+|++....
T Consensus 45 vGnIY~GkV~rv~p~~~aAFVdiG--~gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g 117 (517)
T 2bx2_L 45 KANIYKGKITRIEPSLEAAFVDYG--AERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERG 117 (517)
T ss_dssp TTCEEEEEEEEEETTTTEEEEESS--SSSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCT
T ss_pred CCCEEEEEEEEeccCCceEEEEeC--CCcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeeccc
Confidence 899999999999999 9999998 58999999999987663 35678899999999999997654
No 40
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.55 E-value=7.1e-08 Score=88.45 Aligned_cols=74 Identities=19% Similarity=0.267 Sum_probs=61.9
Q ss_pred CCCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEccccccc----ccc------CccccccCCCeEEEEEEEEeCCCCe
Q 044309 84 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRR----RIR------SVSSLIKVGRIEPVMVLRVDKEKGY 153 (259)
Q Consensus 84 ~~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~----~v~------~~~~~~kvGd~V~vkVi~vD~~~gk 153 (259)
.|++||+|.|+|+++.++|+||+|. ....|++|+|+++.. |.+ ++++.|++||.|.|+|++++. ++.
T Consensus 92 ~P~vGDvViG~Vt~V~~~~a~VdI~--s~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~~-~~~ 168 (308)
T 2nn6_H 92 IGEVGDIVVGRITEVQQKRWKVETN--SRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFS-DGA 168 (308)
T ss_dssp CCCSSBCCCEEEEEEETTEEEEECS--SSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEET-TTE
T ss_pred CCCCCCEEEEEEEEEeCceEEEEEC--CCcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcCC-CCC
Confidence 6789999999999999999999996 358999999998752 222 345789999999999999996 689
Q ss_pred EEEEEee
Q 044309 154 IDLSKRR 160 (259)
Q Consensus 154 I~LSlK~ 160 (259)
+.||.|+
T Consensus 169 i~LStr~ 175 (308)
T 2nn6_H 169 VSLHTRS 175 (308)
T ss_dssp EEEECCS
T ss_pred EEEEecC
Confidence 9999985
No 41
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=98.53 E-value=1.1e-07 Score=98.97 Aligned_cols=79 Identities=16% Similarity=0.088 Sum_probs=63.8
Q ss_pred hhhhhhhcCCCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEccccc--cccc-----------cC----ccccccCCC
Q 044309 76 ECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELS--RRRI-----------RS----VSSLIKVGR 138 (259)
Q Consensus 76 ~~R~~~~~~~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls--~~~v-----------~~----~~~~~kvGd 138 (259)
.|+++... |+++.|+|++|+++|+||.|.+ .|++|+||+|+++ .++. ++ ....|++||
T Consensus 879 ~~~~l~~~----ge~~~g~V~~V~~~G~fV~L~~-~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD 953 (977)
T 2wp8_J 879 VGQVMRNN----ESTETGYVIKVFNNGIVVLVPK-FGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFD 953 (977)
T ss_dssp HHHHHHHT----TCEEEEEEEEECSSEEEEECTT-TCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTC
T ss_pred Hhhhhccc----ceEEEEEEEEEcCCeEEEEEcC-CCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCC
Confidence 45555432 8899999999999999999986 3799999999997 3321 22 357899999
Q ss_pred eEEEEEEEEeCC---CCeEEEEEe
Q 044309 139 IEPVMVLRVDKE---KGYIDLSKR 159 (259)
Q Consensus 139 ~V~vkVi~vD~~---~gkI~LSlK 159 (259)
.|+|+|..+|.+ +++|.||+|
T Consensus 954 ~V~VkV~~vd~~~~~~~kI~Lslk 977 (977)
T 2wp8_J 954 KVEVQVRSVMDPITSKRKAELLLK 977 (977)
T ss_dssp EEEEEECCCCCSSSCCCCCCEEEC
T ss_pred EEEEEEEEEcCcccCCCceEEEeC
Confidence 999999999873 389999986
No 42
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=98.52 E-value=2.3e-07 Score=78.62 Aligned_cols=71 Identities=15% Similarity=0.115 Sum_probs=62.7
Q ss_pred CCCCCcEEEEEEEEEeCceEEEEEccCC-CEEEEEEccccccccccCccccccCCCeEEEEEEEEeCCCCeEEEEE
Q 044309 84 YPEVDMAVMIQVKNIADMGAYVSLLEYN-NIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSK 158 (259)
Q Consensus 84 ~~~~G~iv~G~V~~I~~~GafV~L~ey~-~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~vD~~~gkI~LSl 158 (259)
.|++||+|.|.|+++..++++|+|. + ...|+||++++. ...++.+..|++||.|.|+|..++. ++.+.||.
T Consensus 4 ~P~~gDvViG~V~~v~~~~~~VdI~--~~~~~a~L~~s~~~-g~~k~~r~~l~~GDlV~ArV~~~~~-~~~~~Ltc 75 (175)
T 2ja9_A 4 IPSVNDFVIGVIIGTFSDSYKVSLQ--NFSSSVSLSYMAFP-NASKKNRPTLQVGDLVYARVCTAEK-ELEAEIEC 75 (175)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEESS--TTSCCEEEETTSST-TCCSSSCCCCCTTCEEEEEEEECCT-TSCCEEES
T ss_pred cCCCcCEEEEEEEEEECcEEEEEEC--CCCccEEEEHHHCC-chhhhhhccCCCCCEEEEEEEEecC-CCceEEEe
Confidence 5669999999999999999999997 5 599999999986 4456778899999999999999987 57899994
No 43
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=98.45 E-value=6.4e-07 Score=83.74 Aligned_cols=78 Identities=14% Similarity=-0.008 Sum_probs=63.5
Q ss_pred CCCCcEEEEEEEE----EeCceEEEEEccCC---CEEEEEEccccccccccCccccccCCCeEEEEEEEEeCCCCeEEEE
Q 044309 85 PEVDMAVMIQVKN----IADMGAYVSLLEYN---NIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLS 157 (259)
Q Consensus 85 ~~~G~iv~G~V~~----I~~~GafV~L~ey~---~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~vD~~~gkI~LS 157 (259)
..+|++|+|+|.+ +.+.++||+|+ . +.+|+||.+|+. |++.|++||.|+|.|++|+.+.+...++
T Consensus 128 ~r~GeIVtG~V~r~~~~v~~~~v~VdLG--~~~~k~EgiLP~~Eqi------P~E~~~~GDrVkvyV~~V~~~~kgpqI~ 199 (366)
T 1k0r_A 128 TREGEIVAGVIQRDSRANARGLVVVRIG--TETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAREPLIT 199 (366)
T ss_dssp CCTTCEEEEEEECCHHHHHTTCEEEEEC--CSSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSSSCEEE
T ss_pred hcCCCEEEEEEEEccccccCCeEEEEeC--CCccceEEEEcHHHcC------CCccCCCCCEEEEEEEEEecCCCccEEE
Confidence 3489999999999 99999999995 2 399999999987 4689999999999999999875555555
Q ss_pred EeecchhhHHHHH
Q 044309 158 KRRVSEEDIQACE 170 (259)
Q Consensus 158 lK~~~~~~~~~~~ 170 (259)
+.+..++...++.
T Consensus 200 LSRT~p~lv~~Lf 212 (366)
T 1k0r_A 200 LSRTHPNLVRKLF 212 (366)
T ss_dssp EESSCHHHHHHHH
T ss_pred EEeCChHHHHHHH
Confidence 5555666555543
No 44
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=98.39 E-value=2e-07 Score=72.03 Aligned_cols=42 Identities=24% Similarity=0.409 Sum_probs=38.0
Q ss_pred cCCCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEccccccccc
Q 044309 83 RYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRI 127 (259)
Q Consensus 83 ~~~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~~v 127 (259)
.+. +|+.|.++|+++++||+||+|. ++++||||+|+++|.++
T Consensus 58 ~l~-~Ge~V~g~V~~i~~fG~fv~l~--~~~eGlvhis~i~~~~~ 99 (101)
T 2bh8_A 58 NPQ-QGDRVEGKIKSITDFGIFIGLD--GGIDGLVHLSDISWAQA 99 (101)
T ss_dssp CCC-TTCEEEEEEEECCSEEEEECTT--SCEEEEEEEEEEEECCC
T ss_pred CCC-CCCEEEEEEEEeCCcEEEEEcC--CCceEEEEHHHCccCcC
Confidence 344 9999999999999999999997 58999999999999765
No 45
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=98.27 E-value=2e-06 Score=76.54 Aligned_cols=68 Identities=19% Similarity=0.083 Sum_probs=59.9
Q ss_pred CCcEEEEEEEE----EeCceEEEEEccCC---CEEEEEEccccccccccCccccccCCCeEEEEEEEEeCCC--CeEEEE
Q 044309 87 VDMAVMIQVKN----IADMGAYVSLLEYN---NIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEK--GYIDLS 157 (259)
Q Consensus 87 ~G~iv~G~V~~----I~~~GafV~L~ey~---~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~vD~~~--gkI~LS 157 (259)
+|++|+|+|.+ +.+..+||+|+ . +.+|+||.+|+. +++.|++||.++|.|++++... ++|.||
T Consensus 7 ~GeIVtG~V~r~~~~v~~~~ViVdlG--~~~~k~EgiLP~~Eqi------p~E~~~~GDrIkayV~~V~~~~~gpqIiLS 78 (251)
T 2asb_A 7 EGEIVAGVIQRDSRANARGLVVVRIG--TETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAREPLITLS 78 (251)
T ss_dssp TTCEEEEEEECCHHHHHTTCEEEEEC--SSSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSSSCEEEEE
T ss_pred CCCEEEEEEEEccccccCCeEEEEeC--CCCcceEEEEcHHHcC------CCccCCCCCEEEEEEEEEEcCCCCCEEEEE
Confidence 89999999999 88889999995 2 499999999987 5688999999999999999864 689999
Q ss_pred Eeecc
Q 044309 158 KRRVS 162 (259)
Q Consensus 158 lK~~~ 162 (259)
+....
T Consensus 79 Rt~p~ 83 (251)
T 2asb_A 79 RTHPN 83 (251)
T ss_dssp SSCHH
T ss_pred eccHH
Confidence 88653
No 46
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=97.90 E-value=1.9e-05 Score=71.79 Aligned_cols=74 Identities=9% Similarity=-0.041 Sum_probs=64.0
Q ss_pred cCCCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEccccccccccCccccccCCCeEEEEEEEEeCCCCeEEEEEee
Q 044309 83 RYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRR 160 (259)
Q Consensus 83 ~~~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~vD~~~gkI~LSlK~ 160 (259)
..|++||+|.|+|+++....+.|+|. ....|+||.+++. ...+..+..|++||.|.|+|++++. .+.+.||...
T Consensus 123 YiP~vGDiVIG~Vt~v~~~~~~VdI~--s~~~a~L~~~~f~-Gatk~~r~~f~~GDlV~ArV~s~~~-~~~~eLsc~~ 196 (289)
T 2nn6_G 123 YVPVKGDHVIGIVTAKSGDIFKVDVG--GSEPASLSYLSFE-GATKRNRPNVQVGDLIYGQFVVANK-DMEPEMVCID 196 (289)
T ss_dssp CCCCSSEEEEEEEEEEETTEEEEECS--SSSCCCEESCSSS-CCSSCSSSSSCTTCEEEEEEEECCT-TSCCEEECSB
T ss_pred CCCCCCCEEEEEEEEEeCcEEEEEEC--CCceeEEehhhcC-cchhhhhhhcCCCCEEEEEEEEcCC-CCceEEEecc
Confidence 35789999999999999999999997 5688999999876 3456788899999999999999986 5778998843
No 47
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=97.13 E-value=0.001 Score=51.00 Aligned_cols=57 Identities=14% Similarity=0.074 Sum_probs=38.1
Q ss_pred CCcEEEEEEEEE---eCceEEEEEccCCCEEEEEEccccccccccCccccccCCCeEEEEEEEE
Q 044309 87 VDMAVMIQVKNI---ADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRV 147 (259)
Q Consensus 87 ~G~iv~G~V~~I---~~~GafV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~v 147 (259)
.++.++|+|+.. +.|| |+.-++ ++.++|+|+|++.+... ....+++||.+.+.|.++
T Consensus 13 ~~~~~~G~Vk~fn~~kGfG-FI~~~~-gg~dvfvH~s~l~~~~~--~~~~l~~Ge~V~g~V~~i 72 (101)
T 2bh8_A 13 QSGKMTGIVKWFNADKGFG-FITPDD-GSKDVFVHFSAGSSGAA--VRGNPQQGDRVEGKIKSI 72 (101)
T ss_dssp ---CEEEEEEEEEGGGTEE-EEEESS-SSCEEEEECCCSCSSSC--CCCCCCTTCEEEEEEEEC
T ss_pred ccccceeEEEEEECCCCCE-EEEeCC-CCcEEEEEEEEEecCCc--cccCCCCCCEEEEEEEEe
Confidence 688899999988 6789 888764 56999999999997543 112244555555555444
No 48
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=96.63 E-value=0.00062 Score=52.53 Aligned_cols=49 Identities=10% Similarity=0.002 Sum_probs=33.2
Q ss_pred EEEEeecchhhHHHHHHhccccceEEEEEEecccccCCchH------HH--HHhhchh
Q 044309 155 DLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLE------EL--YVNIGWP 204 (259)
Q Consensus 155 ~LSlK~~~~~~~~~~~~~~~~g~~v~g~V~~i~~~~G~fve------~~--~~~~sw~ 204 (259)
+-|+|++.++||+.....++.|+++.|+|+++.+ +|+|++ ++ .++++|.
T Consensus 11 ~~~iKq~~~~p~~~~~~~~~~G~iv~G~V~~v~~-~G~fV~l~~~~~Gll~~sel~~~ 67 (109)
T 2khj_A 11 SSGLVPRGSHMFNNWVALNKKGAIVTGKVTAVDA-KGATVELADGVEGYLRASEASRD 67 (109)
T ss_dssp ----------CHHHHTTTCCSSSEEEEEEEEECS-SCEEEECSTTCBCCBCTTCCCSS
T ss_pred ccchhhcccCHHHHHhhcCCCCCEEEEEEEEEEC-CeEEEEECCCCEEEEEHHHcCcc
Confidence 4589999999999999999999999999999976 999983 33 6666663
No 49
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=96.60 E-value=0.0093 Score=45.13 Aligned_cols=69 Identities=25% Similarity=0.256 Sum_probs=52.9
Q ss_pred cCCCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEcc-ccccccccCccccccCCCeEEEEEEEEeCCCCeEEE
Q 044309 83 RYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFS-ELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDL 156 (259)
Q Consensus 83 ~~~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhis-Els~~~v~~~~~~~kvGd~V~vkVi~vD~~~gkI~L 156 (259)
.+. .|++.+|.|+ +.+.-++|.|.+|+|.+|+|--. ++..++..+.++.+ +|..|+|+|+++|.- .|++
T Consensus 29 ~~~-~g~VtkGiVy-~kd~~fyV~L~dY~glEaii~dYvnv~~dr~~klkkkL-VGKtIkVqVIRvD~l--YIDV 98 (102)
T 1jjg_A 29 DLS-PGSVHEGIVY-FKDGIFKVRLLGYEGHECILLDYLNYRQDTLDRLKERL-VGRVIKTRVVRADGL--YVDL 98 (102)
T ss_dssp CCC-SSCEEEEEEE-EETTEEEEECTTTSSCEEEECTTCCSSCCCCCHHHHHH-TTCEEEEEEEEECSS--EEEE
T ss_pred ccC-CCceEeeEEE-EeCCEEEEEecCCCCceeeeehhhhhhHHHHHHHHHHh-cCceEEEEEEEeccE--EEEE
Confidence 344 6999999997 57888999999998999997432 23334555555555 899999999999974 6665
No 50
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=96.46 E-value=0.0065 Score=58.37 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=49.6
Q ss_pred hhhhhhhcCCCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEccccccccccCccccccCCCeEEEEEEEEeCCCCeEE
Q 044309 76 ECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYID 155 (259)
Q Consensus 76 ~~R~~~~~~~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~vD~~~gkI~ 155 (259)
.|+++.+. +|+.+.|.|++ +. +.+|++|++++... . .....+++||.|.|+|.++|..+++|+
T Consensus 395 ~~~~l~~~---~g~~f~g~vv~---------l~---~~~glV~v~~l~~d-~-~~~~~~~lGd~V~V~v~~vd~~~~~i~ 457 (469)
T 2r7d_A 395 TLRFIAAQ---PERVWDAVVVD---------RR---GAQATLLIPDLAFD-V-QVNTPAAPGTALQVQFADIDLPQMRVR 457 (469)
T ss_dssp HHHHHHTC---TTCCEEEEEEE---------EE---TTEEEEEEGGGTEE-E-EEECCCCTTCEEEEEEEEEETTTTEEE
T ss_pred HHHHHHhC---CCCEEEEEEEE---------Ee---CcEEEEEECCCCeE-E-ecCCcCCCCCEEEEEEEEEccCCCEEE
Confidence 45666553 79999988754 43 34788888887654 1 223579999999999999999999998
Q ss_pred EEEe
Q 044309 156 LSKR 159 (259)
Q Consensus 156 LSlK 159 (259)
+...
T Consensus 458 f~~~ 461 (469)
T 2r7d_A 458 ARSV 461 (469)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 8653
No 51
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=96.37 E-value=8.8e-07 Score=75.41 Aligned_cols=67 Identities=9% Similarity=0.217 Sum_probs=56.5
Q ss_pred Cccccchhhhh----hhhcccCccccCCCCchhhhhhhhcCCCCCcEEEEEEEEEeC-ceEEEEEccCCCEEEEEEcccc
Q 044309 48 TPFEFSRENAK----AKKLSEQPIMASHSPNLECRMYEARYPEVDMAVMIQVKNIAD-MGAYVSLLEYNNIEGMILFSEL 122 (259)
Q Consensus 48 ~~~eid~e~~r----iK~l~~~pw~~~~~~~~~~R~~~~~~~~~G~iv~G~V~~I~~-~GafV~L~ey~~~eGllhisEl 122 (259)
.++++|++++| +|++.++||.. ..++|+ .|+.+.|+|+++++ || |+|. ++++||+|+|++
T Consensus 71 kVl~vD~~~~rI~LSlk~~~~~p~~~----------~~~~~~-~g~~v~g~v~~i~~~~g--v~l~--~giegl~h~s~~ 135 (182)
T 1kl9_A 71 VVIRVDKEKGYIDLSKRRVSPEEAIK----------CEDKFT-KSKTVYSILRHVAEVLE--YTKD--EQLESLFQRTAW 135 (182)
T ss_dssp EEEEEETTTTEEEEESTTCCHHHHHH----------HHHHHH-HHHHHHHHHHHHHHHTT--CCSH--HHHHHHHHHTHH
T ss_pred EEEEEECCCCEEEEEEeecCcChHHH----------HHHhcc-CCCEEEEEEEEchhhcC--Cccc--CChhheEEeeec
Confidence 34578999988 48999999987 777888 99999999999998 99 8887 489999999998
Q ss_pred ccc-cccC
Q 044309 123 SRR-RIRS 129 (259)
Q Consensus 123 s~~-~v~~ 129 (259)
+|. ++.+
T Consensus 136 ~~~~~~~~ 143 (182)
T 1kl9_A 136 VFDDKYKR 143 (182)
T ss_dssp HHHHHHTC
T ss_pred chhhhcCC
Confidence 874 3444
No 52
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=95.43 E-value=0.055 Score=41.24 Aligned_cols=59 Identities=14% Similarity=-0.080 Sum_probs=49.4
Q ss_pred cCCCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEccccccccc-----cC-ccccccCCCeEEEE
Q 044309 83 RYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRI-----RS-VSSLIKVGRIEPVM 143 (259)
Q Consensus 83 ~~~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~~v-----~~-~~~~~kvGd~V~vk 143 (259)
.++..|+.+-|.|+++.+.++-|.+. ++..+.|+.+.+.|.+- +. +.+.+++||.|.|+
T Consensus 29 ~~~~~~~~~~AvV~~v~~~~~~v~~~--~g~~~~l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 29 DIGNSDDILAAVVLSATPGAVEAFRK--NGETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp TSCTTTTCEEEEEEEEETTEEEEEET--TSCEEEECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEE
T ss_pred ccCccCCeEEEEEEEeCCCeEEEEEc--CCCeEEEcHHHChhhhhcccccccchhccCCCCCEEEEE
Confidence 34557999999999999999999997 46788899999999642 34 66789999999988
No 53
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=95.41 E-value=0.0013 Score=66.65 Aligned_cols=105 Identities=12% Similarity=0.180 Sum_probs=35.3
Q ss_pred CCcEE--EEEEEE--EeCceEEEEEccCCCEEEEEEccccccccccCccccccCCCeEEEEEEEEeCCCCeEEEEEeecc
Q 044309 87 VDMAV--MIQVKN--IADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVS 162 (259)
Q Consensus 87 ~G~iv--~G~V~~--I~~~GafV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~vD~~~gkI~LSlK~~~ 162 (259)
.|+++ .|++.+ +.++|+||+++ . +|.+|++..++.......+. +. .+.
T Consensus 609 i~~vIG~gGk~Ik~I~~~~G~~IdI~---~-dG~v~Is~~~~~~~~~a~~~--------------------i~----~i~ 660 (757)
T 1e3p_A 609 IGEVIGPKRQMINQIQEDTGAEITIE---D-DGTIYIGAADGPAAEAARAT--------------------IN----GIA 660 (757)
T ss_dssp ------------CTTCCCCCSCC------------CCCBSSHHHHCC---------------------------------
T ss_pred eehcccccceeeehhhHhhCCEEEec---C-CceEEEecCCHHHHHHHHHH--------------------HH----Hhc
Confidence 56665 366666 57999999995 3 89999999887554332111 10 011
Q ss_pred hhhHHHHHHhccccceEEEEEEecccccCCch------HHH--HHhh----chhhHHhhcCHHHHHHHHhcCcchh-hcc
Q 044309 163 EEDIQACEERYNKSKLVHSIMRHVAETLGIDL------EEL--YVNI----GWPLYWKYGHAFEAFKIIVTDPDSV-LNS 229 (259)
Q Consensus 163 ~~~~~~~~~~~~~g~~v~g~V~~i~~~~G~fv------e~~--~~~~----sw~l~~~~~~~~~~fk~a~~~~~~~-l~~ 229 (259)
+| ..++.|+++.|+|+++.+ ||+|| ++| .+++ +|. ++.++.+.| .-|+.+ .+-
T Consensus 661 -~p-----~~~~vG~i~~G~V~~i~~-fGaFV~l~~g~eGLvHiSel~~~~s~~---rv~~~~~~~----~vGd~V~VkV 726 (757)
T 1e3p_A 661 -NP-----TSPEVGERILGSVVKTTT-FGAFVSLLPGKDGLLHISQIRKLAGGK---RVENVEDVL----GVGQKVQVEI 726 (757)
T ss_dssp ------------------CBEEECC--CSCEECCC---CCCCC----------------------C----CSSCBCCCCC
T ss_pred -ch-----hhcccccEEEEEEEEccc-cEEEEEEcCCcEEEEEhHHhccccCCC---cccCccccc----CCCCEEEEEE
Confidence 12 467899999999999977 99998 344 8888 884 455555544 555544 333
Q ss_pred CCCc
Q 044309 230 LTRE 233 (259)
Q Consensus 230 l~~~ 233 (259)
++++
T Consensus 727 i~vd 730 (757)
T 1e3p_A 727 AEID 730 (757)
T ss_dssp CCCC
T ss_pred EEEC
Confidence 3433
No 54
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=95.18 E-value=0.0017 Score=50.58 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=31.7
Q ss_pred EEEeecchhhHHHHHHhccccceEEEEEEecccccCCchH------HH--HHhhch
Q 044309 156 LSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLE------EL--YVNIGW 203 (259)
Q Consensus 156 LSlK~~~~~~~~~~~~~~~~g~~v~g~V~~i~~~~G~fve------~~--~~~~sw 203 (259)
-|+|++..+||......++.|+++.|+|+.+.+ +|+|++ ++ .++++|
T Consensus 11 ~~~k~~~~~p~~~~~~~~~~G~~~~G~V~~v~~-~G~FV~l~~~~~Glvhisel~~ 65 (115)
T 2khi_A 11 SSGLVPRGSHWVAIAKRYPEGTKLTGRVTNLTD-YGCFVEIEEGVEGLVHVSEMDW 65 (115)
T ss_dssp ----------CCCSSCSSCSSCEEEEEEEEEET-TEEEEECSTTCEEEEETTSSSC
T ss_pred cchhhcccCCHHHHhhcCCCCCEEEEEEEEEEC-CEEEEEECCCCEEEEEHHHCCc
Confidence 478999999999988899999999999999977 999983 33 677777
No 55
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=94.27 E-value=0.0078 Score=60.80 Aligned_cols=90 Identities=8% Similarity=0.175 Sum_probs=0.0
Q ss_pred CCcEEE--E-EEEEE-eCceEEEEEccCCCEEEEEEccccccccccCccccccCCCeEEEEEEEEeCCCCeEEEEEeecc
Q 044309 87 VDMAVM--I-QVKNI-ADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVS 162 (259)
Q Consensus 87 ~G~iv~--G-~V~~I-~~~GafV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~vD~~~gkI~LSlK~~~ 162 (259)
.|+++- | +|.+| .++|+||+++ -+|.++++..++.......+
T Consensus 571 i~~~ig~gGk~I~~I~~~~G~~IdI~----~dg~v~I~~~~~~~~~~a~~------------------------------ 616 (723)
T 3cdi_A 571 IKDVIGKGGSVIRALTEETGTTIEIE----DDGTVKIAATDGEKAKHAIR------------------------------ 616 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcccccccceeeeeeehhhCceEEec----CCccEEEecCCHHHHHHHHH------------------------------
Confidence 455542 3 46666 5789999995 37899888766543322211
Q ss_pred hhhHHHHHHhccccceEEEEEEecccccCCch------HHH--HHhhchhhHHhhcCHHHHH
Q 044309 163 EEDIQACEERYNKSKLVHSIMRHVAETLGIDL------EEL--YVNIGWPLYWKYGHAFEAF 216 (259)
Q Consensus 163 ~~~~~~~~~~~~~g~~v~g~V~~i~~~~G~fv------e~~--~~~~sw~l~~~~~~~~~~f 216 (259)
-++.....++.|+++.|+|+++.+ ||+|+ ++| .++++|. ++.++.+.|
T Consensus 617 --~i~~i~~~~~vG~i~~G~V~~i~~-fGaFVel~~g~eGLvHiSel~~~---~v~~~~~~~ 672 (723)
T 3cdi_A 617 --RIEEITAEIEVGRVYTGKVTRIVD-FGAFVAIGGGKEGLVHISQIADK---RVEKVTDYL 672 (723)
T ss_dssp --------------------------------------------------------------
T ss_pred --HHHHHhhhhhcCcEEEEEEEEEec-ceEEEEeCCCceEEEEHHHcCCc---cccCccccc
Confidence 012223567899999999999977 99998 345 8888884 455555555
No 56
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=94.05 E-value=0.2 Score=43.15 Aligned_cols=66 Identities=9% Similarity=-0.085 Sum_probs=46.8
Q ss_pred CCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEccccccccccCc------------cccccCCCeEEEEEEEEeCCCC
Q 044309 85 PEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSV------------SSLIKVGRIEPVMVLRVDKEKG 152 (259)
Q Consensus 85 ~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~~v~~~------------~~~~kvGd~V~vkVi~vD~~~g 152 (259)
|.+|+++.|+|+.+++.|+.+-+. +-...+||...|...+.-++ .+--++|+.|+++|.+++...+
T Consensus 127 Pf~GevL~G~V~~~s~~~Ig~~~~--G~Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~~~ig~~IRFrV~~~~~~~~ 204 (214)
T 2rf4_A 127 PQVGDVLEGYIFIQSASHIGLLIH--DAFNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNGEPIDGKLRFTVRNVHTTGR 204 (214)
T ss_dssp CCTTCEEEEEECCCCSSCEEEEET--TTEEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSCCBCCSEEEEEEEEEECCSS
T ss_pred cCCCCEEEEEEEEECCCcEEEEEe--CCEEEEEcHHHCCCcccccccccccCCCceEcCCCCCCCCEEEEEEEEEEecCC
Confidence 448999999999999977766543 45788999998853321111 0112469999999999997433
No 57
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.68 E-value=0.015 Score=45.65 Aligned_cols=53 Identities=9% Similarity=0.063 Sum_probs=39.3
Q ss_pred ecchhhHHHHHHhccccceEEEEEEecccccCCchH-------HH--HHhhchhhHHhhcCHHHHH
Q 044309 160 RVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLE-------EL--YVNIGWPLYWKYGHAFEAF 216 (259)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~~v~g~V~~i~~~~G~fve-------~~--~~~~sw~l~~~~~~~~~~f 216 (259)
++.+++|+.....++.|+++.|+|+++.+ ||+|++ +| .++++|. .+.++.+.|
T Consensus 7 ~~~~~~~~~~~~~~~vG~iv~G~V~~I~~-fGaFV~l~g~~~~Glvhisel~~~---~~~~~~~~~ 68 (119)
T 2cqo_A 7 GMNSGRPETMENLPALYTIFQGEVAMVTD-YGAFIKIPGCRKQGLVHRTHMSSC---RVDKPSEIV 68 (119)
T ss_dssp CSCCCCCCCSCCSCCTTCEEEEEEEEEET-TEEEEECTTCSSCEEEEHHHHCSS---CCSCHHHHC
T ss_pred cccccchhhhhcccCCCCEEEEEEEEEeC-ceEEEEECCCcEEEEEEHHHCCcc---cccChhhcC
Confidence 34556677777788999999999999976 999972 23 7888884 455665555
No 58
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=89.83 E-value=1.9 Score=31.11 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=42.3
Q ss_pred CcEEEEEEEEEe-CceE-EEEEccCCCEEEEEEccccccccccCccccccCCCeEEEEEEEEeCCCCe
Q 044309 88 DMAVMIQVKNIA-DMGA-YVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGY 153 (259)
Q Consensus 88 G~iv~G~V~~I~-~~Ga-fV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~vD~~~gk 153 (259)
.....|+|+... +.|. |+.-++ ++-+-|+|+|.+....-+.--..++.||.|.+.+..- .+|.
T Consensus 6 ~~~~~G~Vkwfn~~kGfGFI~~~~-gg~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~~~--~kG~ 70 (79)
T 1h95_A 6 ATKVLGTVKWFNVRNGYGFINRND-TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEG--EKGA 70 (79)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEGG-GTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEEC--SSSE
T ss_pred ccccceEEEEEECCCCcEEEecCC-CCccEEEEhHHccccccccccccCCCCCEEEEEEEEC--CCCc
Confidence 557889999985 3343 555543 4799999999997531111124578999999987642 3454
No 59
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=89.05 E-value=2.1 Score=31.71 Aligned_cols=53 Identities=11% Similarity=0.060 Sum_probs=41.0
Q ss_pred CCcEEEEEEEEEeCceE-EEEEccCCCEEEEEEccccccccccCccccccCCCeEEEEEEE
Q 044309 87 VDMAVMIQVKNIADMGA-YVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLR 146 (259)
Q Consensus 87 ~G~iv~G~V~~I~~~Ga-fV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~ 146 (259)
......|+|+... .|. |+.-++ ++-+-|+|+|.+... ...++.||.|.+.+..
T Consensus 15 ~~~~~~G~Vkwf~-KGfGFI~~dd-gg~DVFvH~s~i~~~-----~~~L~~G~~V~F~v~~ 68 (89)
T 1wfq_A 15 AALRETGVIEKLL-TSYGFIQCSE-RQARLFFHCSQYNGN-----LQDLKVGDDVEFEVSS 68 (89)
T ss_dssp CCCEEEEEEEEEC-SSEEEEEETT-TTEEEEEETTTCSSC-----TTTCCTTCCEEEEEEE
T ss_pred cccccceEEEEEe-CCeeEEecCC-CCccEEEEhHHhhCc-----cCCCCCCCEEEEEEEE
Confidence 4568899999985 555 676664 459999999999743 2568899999999764
No 60
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=87.82 E-value=1.7 Score=34.63 Aligned_cols=58 Identities=14% Similarity=0.003 Sum_probs=41.1
Q ss_pred CCcEEEEEEEEEeCceEEEEEccCCCEEEEEEccccccccccCccccccCCCeEEEEE
Q 044309 87 VDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMV 144 (259)
Q Consensus 87 ~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkV 144 (259)
.|..+.|+|+.+.+.+++|....--..+--+|++++..-.-......|.+||+|+|-.
T Consensus 14 ~G~~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~ 71 (128)
T 3h8z_A 14 NGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYS 71 (128)
T ss_dssp TSCEEEEEEEEECSSEEEEEETTCTTCCEEEEGGGEECCCCC----CCCTTCEEEEEE
T ss_pred CCCEEEEEEEEEeCCcEEEEEccccCcceEechhhEEcCCCcccccCCCCCCEEEEEe
Confidence 5999999999999999999996201225677888876533333345689999999853
No 61
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=86.97 E-value=1.2 Score=33.05 Aligned_cols=52 Identities=12% Similarity=0.157 Sum_probs=40.4
Q ss_pred CCcEEEEEEEEEeCceE-EEEEccCCCEEEEEEccccccccccCccccccCCCeEEEEEE
Q 044309 87 VDMAVMIQVKNIADMGA-YVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVL 145 (259)
Q Consensus 87 ~G~iv~G~V~~I~~~Ga-fV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi 145 (259)
.+....|+|+... .|. |+.-++ ++-+-|+|+|.+... .+.++.||.|.+.+.
T Consensus 15 ~~~~~~G~Vk~f~-kGfGFI~~dd-gg~DvFvH~S~i~~~-----~~~L~~G~~V~F~~~ 67 (88)
T 2yty_A 15 NSKRLLGYVATLK-DNFGFIETAN-HDKEIFFHYSEFSGD-----VDSLELGDMVEYSLS 67 (88)
T ss_dssp SCCCEEEEEEEEC-SSEEEEECSS-SSCEEEEETTTCCSC-----TTTCCTTCEEEECCC
T ss_pred CCCceeEEEEEEE-CCccEEecCC-CCceEEEEEhhhccc-----cCcCCCCCEEEEEEE
Confidence 4778999999986 355 666653 468999999999743 256889999998874
No 62
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=85.31 E-value=8.1 Score=27.46 Aligned_cols=59 Identities=12% Similarity=0.111 Sum_probs=39.5
Q ss_pred EEEEEEEEe-CceE-EEEEccCCCEEEEEEccccccccccCccccccCCCeEEEEEEEEeCCCCeEEEEEe
Q 044309 91 VMIQVKNIA-DMGA-YVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKR 159 (259)
Q Consensus 91 v~G~V~~I~-~~Ga-fV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~vD~~~gkI~LSlK 159 (259)
..|+|+... ..|. |+.-++ ++-+ |+|+|.+.... .++.||.|.+.+.. + .+|.-...++
T Consensus 3 ~~G~Vkwfn~~KGfGFI~~~d-g~~d-FvH~s~i~~~g------~l~~G~~V~F~~~~-g-~kG~~A~~V~ 63 (74)
T 2k5n_A 3 MNGTITTWFKDKGFGFIKDEN-GDNR-YFHVIKVANPD------LIKKDAAVTFEPTT-N-NKGLSAYAVK 63 (74)
T ss_dssp EEEEEEEEETTTTEEEEEESS-SCEE-EEEGGGBSSGG------GCCTTCEEEEEEEE-C-SSSEEEEEEE
T ss_pred cceEEEEEECCCCeEEEecCC-CCce-EEEHhHcccCC------CCCCCCEEEEEEEe-C-CCCceeEEEE
Confidence 579999884 3343 555553 4566 99999997432 68999999999764 2 3564333333
No 63
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=84.78 E-value=3.7 Score=28.89 Aligned_cols=52 Identities=12% Similarity=0.170 Sum_probs=37.7
Q ss_pred EEEEEEEEEe---CceEEEEEccCCCEEEEEEccccccccccCccccccCCCeEEEEEEEE
Q 044309 90 AVMIQVKNIA---DMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRV 147 (259)
Q Consensus 90 iv~G~V~~I~---~~GafV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~v 147 (259)
...|+|+... .|| |+.-++ ++-+-|+|+|.+.... .+.++.||.|.+.+..-
T Consensus 5 ~~~G~Vk~fn~~kGfG-FI~~~~-g~~dvFvH~s~i~~~g----~~~l~~G~~V~f~~~~~ 59 (71)
T 3i2z_B 5 KIKGNVKWFNESKGFG-FITPED-GSKDVFVHFSAIQTNG----FKTLAEGQRVEFEITNG 59 (71)
T ss_dssp CEEEEEEEEETTTTEE-EEEETT-CCCCEEEEGGGBCCSS----CCCCCTTCEEEEEEEEE
T ss_pred cccEEEEEEECCCCcE-EEecCC-CCccEEEEhHHccccc----CcCCCCCCEEEEEEEEC
Confidence 4679999885 345 566553 4589999999997432 23578999999987653
No 64
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=84.42 E-value=3.8 Score=28.53 Aligned_cols=52 Identities=17% Similarity=0.105 Sum_probs=37.1
Q ss_pred EEEEEEEEe-CceE-EEEEccCCCEEEEEEccccccccccCccccccCCCeEEEEEEEE
Q 044309 91 VMIQVKNIA-DMGA-YVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRV 147 (259)
Q Consensus 91 v~G~V~~I~-~~Ga-fV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~v 147 (259)
..|+|+... +.|. |+.-++ ++-+-|+|+|.+...-. ..++.||.|...+..-
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~-gg~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~~ 55 (67)
T 3cam_A 2 ATGIVKWFNDAKGFGFITPDE-GGEDLFAHFSAINMEGF----KTLKEGQRVSFDVTTG 55 (67)
T ss_dssp EEEEEEEEETTTTEEEEEETT-SCCCEEEEGGGBCGGGG----SSCCTTCEEEEEEEEE
T ss_pred CCEEEEEEECCCCeEEEecCC-CCccEEEEHHHccccCC----CCCCCCCEEEEEEEEC
Confidence 368999884 3344 555553 46899999999974322 4578999999997653
No 65
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=83.23 E-value=4.1 Score=33.06 Aligned_cols=54 Identities=7% Similarity=0.044 Sum_probs=40.8
Q ss_pred CCcEEEEEEEEEe-CceE-EEEEccCCCEEEEEEccccccccccCccccccCCCeEEEEEEEE
Q 044309 87 VDMAVMIQVKNIA-DMGA-YVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRV 147 (259)
Q Consensus 87 ~G~iv~G~V~~I~-~~Ga-fV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~v 147 (259)
.|....|+|+-.. +.|. |+.-++ ++-+-|+|+|.+... ..+..||.|.+.+...
T Consensus 59 ~g~m~~GtVKwFn~~KGfGFI~~dd-Gg~DVFVH~Sai~~~------~~L~eGq~V~Fev~~~ 114 (147)
T 3aqq_A 59 QGPVYKGVCKCFCRSKGHGFITPAD-GGPDIFLHISDVEGE------YVPVEGDEVTYKMCSI 114 (147)
T ss_dssp HSCCEEEEEEEEETTTTEEEEEESS-SCSCEEEEGGGEESS------BCCCTTCEEEEEEEEC
T ss_pred cCCccceEEEEEeCCCCeEEeccCC-CCccEEEEeeeecCC------CcCCCCCEEEEEEEec
Confidence 5788999999984 3344 555553 458999999999632 2689999999998653
No 66
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=83.09 E-value=1.4 Score=33.09 Aligned_cols=51 Identities=10% Similarity=0.012 Sum_probs=39.7
Q ss_pred CcEEEEEEEEEeCceE-EEEEccCCCEEEEEEccccccccccCccccccCCCeEEEEEE
Q 044309 88 DMAVMIQVKNIADMGA-YVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVL 145 (259)
Q Consensus 88 G~iv~G~V~~I~~~Ga-fV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi 145 (259)
.....|+|+.. ..|. |+.-++ ++-+-|+|+|.+... ...++.||.|.+.+.
T Consensus 16 ~~~~~G~Vkwf-~KGfGFI~~dd-g~~DvFvH~s~i~~~-----~~~L~~G~~V~F~v~ 67 (97)
T 2ytx_A 16 QARCQGVVCAM-KEAFGFIERGD-VVKEIFFHYSEFKGD-----LETLQPGDDVEFTIK 67 (97)
T ss_dssp CCCEEEEECCC-CSSEEEEECSS-SCCCEEEETTTCCSC-----TTSCCSCCEEEEEEC
T ss_pred CcceeEEEEEE-eCCceEEecCC-CCceEEEEehHhccc-----cCCCCCCCEEEEEEE
Confidence 56789999988 5565 666653 458999999999753 256889999999884
No 67
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=82.49 E-value=0.29 Score=35.09 Aligned_cols=32 Identities=9% Similarity=0.122 Sum_probs=25.5
Q ss_pred hccccceEEEEEEecccccCCchH------HH--HHhhchh
Q 044309 172 RYNKSKLVHSIMRHVAETLGIDLE------EL--YVNIGWP 204 (259)
Q Consensus 172 ~~~~g~~v~g~V~~i~~~~G~fve------~~--~~~~sw~ 204 (259)
.++.|+++.|+|+++.+ +|+|++ ++ .++++|.
T Consensus 2 ~~~~G~iv~G~V~~v~~-~G~fV~l~~~~~Gllh~sel~~~ 41 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEK-YGAFINLNEQVRGLLRPRDMISL 41 (80)
T ss_dssp CCCTTCEEEEEEEEEET-TEEEEEEETTEEEEECGGGCSSC
T ss_pred CCCCCCEEEEEEEEEeC-CEEEEEECCCCEEEEEHHHCCcc
Confidence 46889999999999976 999983 33 7777774
No 68
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=82.45 E-value=6.7 Score=27.02 Aligned_cols=51 Identities=10% Similarity=0.165 Sum_probs=36.8
Q ss_pred EEEEEEEEe-CceE-EEEEccCCCEEEEEEccccccccccCccccccCCCeEEEEEEEE
Q 044309 91 VMIQVKNIA-DMGA-YVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRV 147 (259)
Q Consensus 91 v~G~V~~I~-~~Ga-fV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~v 147 (259)
..|+|+... +.|. |+.-+ ++-+-|+|+|.+.... ...+..||.|...+..-
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~--~g~dvFvH~s~i~~~g----~~~l~~G~~V~f~~~~~ 54 (66)
T 1c9o_A 2 QRGKVKWFNNEKGYGFIEVE--GGSDVFVHFTAIQGEG----FKTLEEGQEVSFEIVQG 54 (66)
T ss_dssp EEEEEEEEETTTTEEEEEET--TEEEEEEEGGGBCSSS----CCCCCTTCEEEEEEEEE
T ss_pred CceEEEEEECCCCeEEEecC--CCccEEEEHHHccccC----CCCCCCCCEEEEEEEEC
Confidence 479999885 3344 66665 3589999999997532 23478999999987643
No 69
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=82.14 E-value=0.36 Score=35.60 Aligned_cols=39 Identities=5% Similarity=0.099 Sum_probs=28.6
Q ss_pred ccccceEEEEEEecccccCCchH--------HH--HH-hhchhhHHhhcCHHHHH
Q 044309 173 YNKSKLVHSIMRHVAETLGIDLE--------EL--YV-NIGWPLYWKYGHAFEAF 216 (259)
Q Consensus 173 ~~~g~~v~g~V~~i~~~~G~fve--------~~--~~-~~sw~l~~~~~~~~~~f 216 (259)
.+.|+++.|+|+ +.+ ||+|++ ++ .+ +++|. .+.++.+.|
T Consensus 9 ~~vG~~~~G~V~-v~~-fG~FVel~~~~~~eGLvhis~el~~~---~~~~~~~~~ 58 (88)
T 1luz_A 9 PNAGDVIKGRVY-EKD-YALYIYLFDYPHFEAILAESVKMHMD---RYVEYRDKL 58 (88)
T ss_dssp CCTTCEEEEEEE-EET-TEEEEEETTCTTSEEEEGGGSSCCHH---HHHHHHHHH
T ss_pred CCCCCEEEEEEE-EEc-cEEEEEECCCCCeEEEEEeeHHhCcc---cccCHhHEe
Confidence 468999999999 976 999872 23 67 88884 455555555
No 70
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=80.43 E-value=2.9 Score=30.42 Aligned_cols=62 Identities=19% Similarity=0.038 Sum_probs=43.0
Q ss_pred cEEEEEEEEEeCceE-EEEEccCCCEEEEEEcccccc-ccccCccccccCCCeEEEEEEEEeCCCCeEEEE
Q 044309 89 MAVMIQVKNIADMGA-YVSLLEYNNIEGMILFSELSR-RRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLS 157 (259)
Q Consensus 89 ~iv~G~V~~I~~~Ga-fV~L~ey~~~eGllhisEls~-~~v~~~~~~~kvGd~V~vkVi~vD~~~gkI~LS 157 (259)
-.+.|+|+...+.|. +|.++ +|..-++|++=--. .++ .+-+||.|.+.+...|..+|+|..-
T Consensus 14 ie~~G~Vik~l~n~~f~V~l~--nG~~~~c~i~GK~Rk~~I-----~Il~GD~V~ve~~~yd~~kgrIi~R 77 (79)
T 3i4o_A 14 IEVEGRVVEPLPNAMFRIELE--NGHKVLAHISGKMRQHYI-----RILPEDRVVVELSPYDLSRGRIVYR 77 (79)
T ss_dssp SEEEEEEEEEETTTEEEEEET--TSCEEEEEECHHHHHTTC-----CCCTTCEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEEEEcCCCEEEEEeC--CCCEEEEEeCcceecCCc-----cCCCCCEEEEEECccCCCcEEEEEE
Confidence 357999999986665 58886 57677777764221 122 2679999999887666666777643
No 71
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=80.02 E-value=5.9 Score=27.95 Aligned_cols=51 Identities=12% Similarity=0.170 Sum_probs=36.7
Q ss_pred EEEEEEEEe-CceE-EEEEccCCCEEEEEEccccccccccCccccccCCCeEEEEEEEE
Q 044309 91 VMIQVKNIA-DMGA-YVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRV 147 (259)
Q Consensus 91 v~G~V~~I~-~~Ga-fV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~v 147 (259)
.+|+|+... ..|. |+.-+ ++-+-|+|+|.+...-. ..+..||.|.+.+..-
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~--~g~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~~ 54 (73)
T 3a0j_A 2 QKGRVKWFNAEKGYGFIERE--GDTDVFVHYTAINAKGF----RTLNEGDIVTFDVEPG 54 (73)
T ss_dssp EEEEEEEEETTTTEEEEECT--TSCCEEEEGGGBCSSSC----SSCCTTCEEEEEEECC
T ss_pred CCEEEEEEECCCCEEEEecC--CCCcEEEEhhhccccCC----CCCCCCCEEEEEEEEC
Confidence 479999885 3344 66655 36899999999974322 3578999999987643
No 72
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=78.66 E-value=0.41 Score=48.33 Aligned_cols=47 Identities=13% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHhccccceEEEEEEecccccCCch------HHH--HHhhchhhHHhhcCHHHHH
Q 044309 166 IQACEERYNKSKLVHSIMRHVAETLGIDL------EEL--YVNIGWPLYWKYGHAFEAF 216 (259)
Q Consensus 166 ~~~~~~~~~~g~~v~g~V~~i~~~~G~fv------e~~--~~~~sw~l~~~~~~~~~~f 216 (259)
++.....++.|+++.|+|+++.+ ||+|| ++| .++++| +++.++.+.|
T Consensus 628 i~~i~~~~~vG~v~~G~V~~I~~-fGaFVel~~g~eGLvHiSels~---~rv~~~~d~~ 682 (726)
T 4aid_A 628 IKSITDEAEVGKIYDGKVVKVVD-FGAFVNFFGAKDGLVHVSQISN---ERVAKPSDVL 682 (726)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHhhhhcCCcEEEEEEEEEec-cEEEEEECCCcEEEEEHHHcCc---ccccCccccC
Confidence 44456788999999999999976 99998 345 889998 4566666665
No 73
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=77.77 E-value=0.74 Score=35.45 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=21.5
Q ss_pred HhccccceEEEEEEecccccCCchH
Q 044309 171 ERYNKSKLVHSIMRHVAETLGIDLE 195 (259)
Q Consensus 171 ~~~~~g~~v~g~V~~i~~~~G~fve 195 (259)
+.++.|+++.|+|+++.+ ||+|++
T Consensus 17 ~~l~~G~i~~G~V~~v~~-fG~fV~ 40 (119)
T 1wi5_A 17 EALKPGMLLTGTVSSLED-HGYLVD 40 (119)
T ss_dssp TTCCTTCEEEEEEEEECS-SEEEEE
T ss_pred hcCCCCCEEEEEEEEEeC-ceEEEE
Confidence 568999999999999976 999985
No 74
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=77.22 E-value=0.13 Score=47.59 Aligned_cols=62 Identities=18% Similarity=0.148 Sum_probs=42.4
Q ss_pred ccccCCCeEEEEEEEEeCCCCeEEEEEeecchhhHHHH-----HHhcc--ccceEEEEEEecccccCCchH
Q 044309 132 SLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQAC-----EERYN--KSKLVHSIMRHVAETLGIDLE 195 (259)
Q Consensus 132 ~~~kvGd~V~vkVi~vD~~~gkI~LSlK~~~~~~~~~~-----~~~~~--~g~~v~g~V~~i~~~~G~fve 195 (259)
..+.+||.+.+.|...|.. +....+.|++....+.+. .+.|+ .|++++|+|.++.+ +|++++
T Consensus 85 ~~~~vGd~ie~~I~~~dfg-R~aa~~aKqvi~qkireaere~i~~e~~~~~GeIV~G~V~ri~~-~~v~VD 153 (344)
T 1hh2_P 85 PLAEVGSIVKKELNVKNFG-RIAAQTAKQVLIQRIRELEKEKQFEKYSELKGTVTTAEVIRVMG-EWADIR 153 (344)
T ss_dssp TTCCTTCEEEEECCCCCSS-SCSGGGHHHHHHHHHHHHTTCCSSCCTTCCTTCEEEEEEEEECS-SEEEEE
T ss_pred ccccCCCEEEEEEccccCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEec-CcEEEE
Confidence 4478999999999877653 223333355443333333 45666 89999999999975 888874
No 75
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=76.46 E-value=0.56 Score=36.95 Aligned_cols=33 Identities=6% Similarity=0.132 Sum_probs=25.7
Q ss_pred HhccccceEEEEEEecccccCCchH------HH--HHhhchh
Q 044309 171 ERYNKSKLVHSIMRHVAETLGIDLE------EL--YVNIGWP 204 (259)
Q Consensus 171 ~~~~~g~~v~g~V~~i~~~~G~fve------~~--~~~~sw~ 204 (259)
..+..|+++.|+|+.+.+ +|+||+ ++ .++++|.
T Consensus 3 ~~~~vG~iv~G~V~~i~~-~G~FV~l~~~~~Glihisel~~~ 43 (130)
T 2k4k_A 3 AKFEVGSVYTGKVTGLQA-YGAFVALDEETQGLVHISEVTHG 43 (130)
T ss_dssp CCCCTTCEEEEEEEEEET-TEEEEEEETTEEEEEEGGGTSSS
T ss_pred CcCCCCCEEEEEEEEEeC-CeEEEEECCCcEEEEEHHHCCcc
Confidence 357889999999999976 899872 33 7788774
No 76
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=76.23 E-value=11 Score=26.76 Aligned_cols=60 Identities=13% Similarity=0.051 Sum_probs=39.9
Q ss_pred EEEEEEEe-CceE-EEEEccCCCEEEEEEccccc-cccccCccccccCCCeEEEEEEEEeCCCCeEEEEEe
Q 044309 92 MIQVKNIA-DMGA-YVSLLEYNNIEGMILFSELS-RRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKR 159 (259)
Q Consensus 92 ~G~V~~I~-~~Ga-fV~L~ey~~~eGllhisEls-~~~v~~~~~~~kvGd~V~vkVi~vD~~~gkI~LSlK 159 (259)
+|+|+... +.|. |+.-+ ++-+-|+|+|.+. .... ..++.||.|.+.+.. ..+|.-...++
T Consensus 2 ~G~Vkwfn~~KGfGFI~~~--dG~DvFvH~s~i~~~~g~----~~l~~G~~V~F~~~~--g~kG~~A~~V~ 64 (74)
T 2kcm_A 2 KGKVVSYLAAKKYGFIQGD--DGESYFLHFSELLDKKDE----GKLVKGSMVHFDPTP--TPKGLAAKAIS 64 (74)
T ss_dssp EEEEEEEETTTTEEEEEET--TSCEECCCGGGSSCSGGG----TTCCTTSEEEEEEEC--TTTSCEEEEEE
T ss_pred CEEEEEEECCCCEEEEecC--CCceEEEEhhhcccCCCC----CCCCCCCEEEEEEEE--CCCCceeEEEE
Confidence 68998884 3343 55655 3589999999997 4322 457899999998753 23565444333
No 77
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.19 E-value=1.1 Score=33.65 Aligned_cols=23 Identities=9% Similarity=0.169 Sum_probs=20.2
Q ss_pred HhccccceEEEEEEecccccCCch
Q 044309 171 ERYNKSKLVHSIMRHVAETLGIDL 194 (259)
Q Consensus 171 ~~~~~g~~v~g~V~~i~~~~G~fv 194 (259)
..++.|+++.|+|+++.+ ||+|+
T Consensus 8 ~~~~vG~i~~G~V~~v~~-fG~FV 30 (103)
T 2eqs_A 8 EEPTIGDIYNGKVTSIMQ-FGCFV 30 (103)
T ss_dssp SSCCTTCEEEEEEEEECS-SCEEE
T ss_pred ccCCCCCEEEEEEEEEec-cEEEE
Confidence 356899999999999976 99997
No 78
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=72.59 E-value=3 Score=28.87 Aligned_cols=49 Identities=12% Similarity=0.167 Sum_probs=35.3
Q ss_pred EEEEEEEe-CceE-EEEEccCCCEEEEEEccccccccccCccccccCCCeEEEEEEE
Q 044309 92 MIQVKNIA-DMGA-YVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLR 146 (259)
Q Consensus 92 ~G~V~~I~-~~Ga-fV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~ 146 (259)
+|+|+... ..|. |+.-+ ++-+-|+|+|.+...-. ..++.||.|...+..
T Consensus 2 ~G~Vk~fn~~kGfGFI~~~--~g~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~ 52 (66)
T 1g6p_A 2 RGKVKWFDSKKGYGFITKD--EGGDVFVHWSAIEMEGF----KTLKEGQVVEFEIQE 52 (66)
T ss_dssp CEEEEEEETTTTEEEEEET--TSCBCBBCSSSSCCSSC----CCCCSSSEEEEEEEC
T ss_pred cEEEEEEECCCCEEEEecC--CCceEEEEhHHccccCC----CCCCCCCEEEEEEEE
Confidence 58888885 3343 56665 46899999999974321 457899999988753
No 79
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=72.32 E-value=0.0099 Score=54.24 Aligned_cols=49 Identities=10% Similarity=0.222 Sum_probs=40.5
Q ss_pred Cccccchhhhhh----hhcccCccccCCCCchhhhhhhhcCCCCCcEEEEEEEEEeC-ceEEEEE
Q 044309 48 TPFEFSRENAKA----KKLSEQPIMASHSPNLECRMYEARYPEVDMAVMIQVKNIAD-MGAYVSL 107 (259)
Q Consensus 48 ~~~eid~e~~ri----K~l~~~pw~~~~~~~~~~R~~~~~~~~~G~iv~G~V~~I~~-~GafV~L 107 (259)
.++++|++++|+ |++.++||.. ....++ .|+++.|+|+++.+ ||+|++-
T Consensus 69 kVl~vD~~~~rI~LSlK~~~~~p~~~----------~~~~~~-~G~~v~G~V~~v~~~~G~fi~~ 122 (308)
T 1q8k_A 69 KVIRVDKEKGYIDLSKRRVSPEEAIK----------CEDKFT-KSKTVYSILRHVAEVLEYTKDE 122 (308)
T ss_dssp EEEEEETTTTEEEEECSSCCHHHHHH----------HHHHHH-HHHHHHHHHHHHHHHTTCCSSH
T ss_pred EEEEEeCCCCEEEEEEEecccChHHH----------HHHHcc-CCCeeEEEEEEcccccCCccCC
Confidence 345789988884 7888899987 667787 89999999999998 6998753
No 80
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=72.04 E-value=12 Score=30.03 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=37.1
Q ss_pred EEEEEEEEEe---CceEEEEEc-------cCCCEEEEEEccccccccccCccccccCCCeEEEEEEEE
Q 044309 90 AVMIQVKNIA---DMGAYVSLL-------EYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRV 147 (259)
Q Consensus 90 iv~G~V~~I~---~~GafV~L~-------ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~v 147 (259)
..+|+|+-.. .||+ |.-+ + ++.+-|+|+|.|..... ..+..||.|.+.|..-
T Consensus 9 ~~~G~Vkwfn~~kGfGF-I~~~~~~g~p~~-~g~DvFvH~s~i~~~g~----~~l~eG~~V~f~~~~g 70 (148)
T 3ts2_A 9 HGAGICKWFNVRMGFGF-LSMTARAGVALD-PPVDVFVHQSKLHMEGF----RSLKEGEAVEFTFKKS 70 (148)
T ss_dssp EEEEEEEEEETTTTEEE-EEEEEETTEEEE-EEEEEEEEGGGBCSSSS----CCCCTTCEEEEEEEEE
T ss_pred cceeEEEEEECCCCeeE-EeeCccccccCC-CCccEEEEhHHhcccCC----ccCCCCCEEEEEEEEc
Confidence 5789999884 3454 4432 1 36899999999974322 3578999999998764
No 81
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=68.19 E-value=2 Score=31.90 Aligned_cols=50 Identities=12% Similarity=0.197 Sum_probs=37.5
Q ss_pred cEEEEEEEEEeCceE-EEEEccCCCEEEEEEccccccccccCccccccCCCeEEEEEEE
Q 044309 89 MAVMIQVKNIADMGA-YVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLR 146 (259)
Q Consensus 89 ~iv~G~V~~I~~~Ga-fV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~ 146 (259)
...+|+|+... .|. |+.-++ ++-+-|+|+|.+... +.+++||.|...|..
T Consensus 7 ~r~~G~Vk~f~-KGfGFI~~~~-gg~DvFvH~s~i~~~------~~L~~G~~V~F~v~~ 57 (89)
T 1x65_A 7 GREMGVIAAMR-DGFGFIKCVD-RDVRMFFHFSEILDG------NQLHIADEVEFTVVP 57 (89)
T ss_dssp CCEEEEEEECC-TTBCEEEESS-SSSCCCCBTTGGGGS------CCCCTTCCEEECCBC
T ss_pred cceeEEEEEEe-CCcceeecCC-CCccEEEEhhhccCC------CCCCCCCEEEEEEEe
Confidence 35789999884 454 666653 468999999999741 468999999988754
No 82
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=66.35 E-value=21 Score=26.31 Aligned_cols=53 Identities=19% Similarity=0.180 Sum_probs=36.2
Q ss_pred EEEEEEEEEe-CceE-EEEEc-------cCCCEEEEEEccccccccccCccccccCCCeEEEEEEEE
Q 044309 90 AVMIQVKNIA-DMGA-YVSLL-------EYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRV 147 (259)
Q Consensus 90 iv~G~V~~I~-~~Ga-fV~L~-------ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~v 147 (259)
..+|+|+-.. ..|. ||... + ++.+-|+|.|.|...-. +.+..||.|.+.|..=
T Consensus 8 r~tG~VKWFn~~KGfGFI~~~~~~~~p~d-gg~DvFVH~s~i~~~g~----~~L~eG~~V~f~v~~g 69 (90)
T 3ulj_A 8 RGSGHCKWFNVRMGFGFISMTSREGSPLE-NPVDVFVHQSKLYMEGF----RSLKEGEPVEFTFKKS 69 (90)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEETTEEEE-EEEEEEEEGGGBCCSSS----CCCCTTCEEEEEEEEE
T ss_pred ccceEEEEeeCCCCeEEeEecCcCcCCCC-CCccEEEEeehhcccCC----CccCCCCEEEEEEEEC
Confidence 5679998774 3343 55421 1 36789999999964322 3478999999988653
No 83
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=66.04 E-value=32 Score=27.62 Aligned_cols=69 Identities=16% Similarity=0.129 Sum_probs=48.7
Q ss_pred CCCCCcEEEEEEEEEeCceEE-EEEccCCCEEEEEEccccccccccCccccccCCCeEEEEEEEEeCCCCeEEEEEee
Q 044309 84 YPEVDMAVMIQVKNIADMGAY-VSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRR 160 (259)
Q Consensus 84 ~~~~G~iv~G~V~~I~~~Gaf-V~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~vD~~~gkI~LSlK~ 160 (259)
+|+ ...+.|+|+.....+.| |.+. +|..-|+|++-=- +. .--+..||.|.|.....+..+|+|..-++.
T Consensus 27 ~p~-ege~~g~V~e~lgn~~f~V~l~--nG~~~La~I~GKm----Rk-~IwI~~GD~VlVe~~~yd~~KG~Ii~r~~~ 96 (143)
T 1d7q_A 27 FKE-DGQEYAQVIKMLGNGRLEAMCF--DGVKRLCHIRGKL----RK-KVWINTSDIILVGLRDYQDNKADVILKYNA 96 (143)
T ss_dssp CCC-TTEEEEEEEEECSSSEEEEEET--TTEEEEEECCSGG----GG-SCCCCTTCEEEEECSSSSSSCCEEEEEECT
T ss_pred CCC-CCEEEEEEEEEcCCCEEEEEeC--CCCEEEEEecccc----ee-eEEecCCCEEEEeeccCCCCeEEEEEEeCH
Confidence 563 44688999999887765 5665 6899999987522 22 233789999998876666667777765553
No 84
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=60.92 E-value=4.7 Score=29.08 Aligned_cols=49 Identities=10% Similarity=0.126 Sum_probs=35.0
Q ss_pred EEEEEEEEEe-CceEEEEEccCC-CEEEEEEccccccccccCccccccCCCeEEEEEEE
Q 044309 90 AVMIQVKNIA-DMGAYVSLLEYN-NIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLR 146 (259)
Q Consensus 90 iv~G~V~~I~-~~GafV~L~ey~-~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~ 146 (259)
...|+|..+. -|| |+.-++ + +-+-|+|+|.+... ..++.||.|.+.+..
T Consensus 8 ~~~G~V~~~~KGfG-FI~~dd-g~g~DvFvH~s~i~~g------~~l~~G~~V~F~v~~ 58 (79)
T 2ytv_A 8 LRRATVECVKDQFG-FINYEV-GDSKKLFFHVKEVQDG------IELQAGDEVEFSVIL 58 (79)
T ss_dssp BCCEEEEECCSSEE-EESCCC-SSSSSEEEETTTCCSS------CCCCTTCEEECBCEE
T ss_pred cccEEEEEecccce-eEeCCC-CCCCcEEEEhHHcCCC------CcCCCCCEEEEEEEE
Confidence 4578888873 444 555542 3 37999999999721 468899999998764
No 85
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=63.80 E-value=1.9 Score=30.30 Aligned_cols=51 Identities=10% Similarity=0.029 Sum_probs=35.3
Q ss_pred EEEEEEEEEe---CceEEEEEccCCCEEEEEEccccccccccCccccccCCCeEEEEEEE
Q 044309 90 AVMIQVKNIA---DMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLR 146 (259)
Q Consensus 90 iv~G~V~~I~---~~GafV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~ 146 (259)
.+.|+|+... .||. +.-++ ++-+-|+|+|.+...- ...+..||.|...+..
T Consensus 4 ~~~G~Vk~fn~~kGfGF-I~~~~-gg~dvFvH~s~i~~~g----~~~l~~G~~V~f~~~~ 57 (70)
T 2lss_A 4 NIVGKVKWYNSTKNFGF-IEQDN-GGKDVFVHKSAVDAAG----LHSLEEGQDVIFDLEE 57 (70)
Confidence 4678888764 3554 44442 4689999999997432 2457899999988754
No 86
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=58.36 E-value=2.9 Score=34.67 Aligned_cols=32 Identities=16% Similarity=0.360 Sum_probs=21.4
Q ss_pred hcc-ccceEEEEEEecccccCCchH--------HH--HHhhchh
Q 044309 172 RYN-KSKLVHSIMRHVAETLGIDLE--------EL--YVNIGWP 204 (259)
Q Consensus 172 ~~~-~g~~v~g~V~~i~~~~G~fve--------~~--~~~~sw~ 204 (259)
.|. .|+++.|+|+++.+ ||+|++ +| .++++|.
T Consensus 11 ~~p~~G~iv~G~V~~i~~-fGaFV~L~e~~gveGLvhiSels~~ 53 (175)
T 2a19_A 11 KYPEIDDIVMVNVQQIAE-MGAYVKLLEYDNIEGMILLSELSRR 53 (175)
T ss_dssp SSCCTTCEEEEEEEEEET-TEEEEEETTTTTCEEEEECC-----
T ss_pred cCCCCCCEEEEEEEEEec-ceEEEEEcCCCCcEEEEEHHHcCCc
Confidence 344 89999999999976 999972 23 7788874
No 87
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.89 E-value=31 Score=26.47 Aligned_cols=68 Identities=16% Similarity=0.098 Sum_probs=45.2
Q ss_pred CCCCCcEEEEEEEEEeCceEE-EEEccCCCEEEEEEccccccccccCccccccCCCeEEEEEEEEe-CCCCeEEEEEe
Q 044309 84 YPEVDMAVMIQVKNIADMGAY-VSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVD-KEKGYIDLSKR 159 (259)
Q Consensus 84 ~~~~G~iv~G~V~~I~~~Gaf-V~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~vD-~~~gkI~LSlK 159 (259)
+|+.| .+.|+|+.....+.| |.+. +|..-+.|++-= .+. .--+..||.|.|.....| ..+|+|..-++
T Consensus 11 ~p~eg-e~~g~V~~~lgn~~f~V~l~--nG~~~la~i~GK----~Rk-~IwI~~GD~VlVe~~~yd~~~kg~Iv~r~~ 80 (111)
T 2dgy_A 11 VPSNQ-QQIVRVLRTPGNNLHEVETA--QGQRFLVSMPSK----YRK-NIWIKRGDFLIVDPIEEGEKVKAEISFVLC 80 (111)
T ss_dssp CCCSS-CEEEEEEECCSSSEEEEECT--TSCEEEEECCTT----CCS-CCCCCSSCEEEEEECSSCSSCCEEEEEECC
T ss_pred CCCCC-eEEEEEEEeCCCCEEEEEeC--CCCEEEEEechh----hcc-cEEEcCCCEEEEEecccCCcceEEEEEEeC
Confidence 45345 578999998877765 5555 689999987752 222 233789999998876544 44556655444
No 88
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=50.64 E-value=3.3 Score=43.41 Aligned_cols=33 Identities=9% Similarity=-0.028 Sum_probs=0.0
Q ss_pred HhccccceEEEEEEecccccCCch------HHH--HHhhchh
Q 044309 171 ERYNKSKLVHSIMRHVAETLGIDL------EEL--YVNIGWP 204 (259)
Q Consensus 171 ~~~~~g~~v~g~V~~i~~~~G~fv------e~~--~~~~sw~ 204 (259)
+.+++|+++.|+|+++.+ ||+|| +++ .++++|.
T Consensus 901 ~~l~~G~iv~G~V~~V~~-fGaFV~L~~gveGLVHiSelsd~ 941 (1030)
T 3psf_A 901 KTFFKGSIIPVRVERFWH-NDIICTTNSEVECVVNAQRHAGA 941 (1030)
T ss_dssp ------------------------------------------
T ss_pred HHhcCCCEEEEEEEEEcc-CeEEEEeCCCcEEEEEHHHcCCC
Confidence 678999999999999977 99998 344 7888884
No 89
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=48.39 E-value=32 Score=26.44 Aligned_cols=65 Identities=18% Similarity=0.181 Sum_probs=39.4
Q ss_pred CCCCCcEEEEEEEEEeCceE-EEEEccCCCEEEEEEccccccccccCccccccCCCeEEEEEEEEeCCCCeEEE
Q 044309 84 YPEVDMAVMIQVKNIADMGA-YVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDL 156 (259)
Q Consensus 84 ~~~~G~iv~G~V~~I~~~Ga-fV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~vD~~~gkI~L 156 (259)
+|+.|+. .|+|+.....|. .|.+. +|..-++|++---.. .--+.+||.|.+.+...+..+|.|.-
T Consensus 28 ~~~~~e~-~G~Vi~~lgn~~y~V~~~--dG~~~l~~i~GK~Rk-----~I~i~~GD~V~ve~~~~~~~kG~I~~ 93 (117)
T 2oqk_A 28 FKEEGQE-YGQVQRMLGNGRLDAYCF--DGQKRLCHIRGKMRK-----KVWVNPGDIVLVSLRDFQDSKGDIIL 93 (117)
T ss_dssp CCCTTEE-EEEEEEEEETTEEEEEET--TSCEEEEECCHHHHH-----HSCCCTTCEEEEEECTTCTTEEEEEE
T ss_pred CCCCCEE-EEEEEEEcCCCEEEEEeC--CCCEEEEEEcCceec-----CCcCCCCCEEEEEEEcCCCCeEEEEE
Confidence 5546665 799999887555 55576 566777776642211 22245999998775433333455544
No 90
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=44.35 E-value=18 Score=30.59 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=36.8
Q ss_pred cccCCCeEEEEEEEEeCCCCeEEEEE----------eec------chhhHH--HHHHhccccceEEEEEEeccc
Q 044309 133 LIKVGRIEPVMVLRVDKEKGYIDLSK----------RRV------SEEDIQ--ACEERYNKSKLVHSIMRHVAE 188 (259)
Q Consensus 133 ~~kvGd~V~vkVi~vD~~~gkI~LSl----------K~~------~~~~~~--~~~~~~~~g~~v~g~V~~i~~ 188 (259)
.+++||.|.++|.++....-.+++.- ..+ .....+ +..+.+++|+.+..+|..+.+
T Consensus 78 ~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~ 151 (209)
T 2nn6_I 78 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGD 151 (209)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEET
T ss_pred CCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeC
Confidence 58999999999999976433344320 011 111111 345568999999999999954
No 91
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=44.27 E-value=7.1 Score=31.75 Aligned_cols=21 Identities=14% Similarity=0.338 Sum_probs=18.7
Q ss_pred cccceEEEEEEecccccCCchH
Q 044309 174 NKSKLVHSIMRHVAETLGIDLE 195 (259)
Q Consensus 174 ~~g~~v~g~V~~i~~~~G~fve 195 (259)
..|++++|+|+++.+ ||+|++
T Consensus 82 ~~Gev~~G~V~~v~~-fG~FV~ 102 (171)
T 1y14_B 82 FKGEVVDGTVVSCSQ-HGFEVQ 102 (171)
T ss_dssp CTTCEEEEEEEEEET-TEEEEE
T ss_pred CCCCEEEEEEEEEec-CEEEEE
Confidence 389999999999977 999984
No 92
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=43.41 E-value=52 Score=21.36 Aligned_cols=48 Identities=13% Similarity=0.076 Sum_probs=27.7
Q ss_pred cEEEEEEEEEeCceEEE--EEccCCC--EEEEEEccccccccccCccccccCCCeEEEEE
Q 044309 89 MAVMIQVKNIADMGAYV--SLLEYNN--IEGMILFSELSRRRIRSVSSLIKVGRIEPVMV 144 (259)
Q Consensus 89 ~iv~G~V~~I~~~GafV--~L~ey~~--~eGllhisEls~~~v~~~~~~~kvGd~V~vkV 144 (259)
-.+.|+|+++...|..+ .+.- ++ +.+.++...+. .-.+++|+.+.+.+
T Consensus 7 N~l~g~V~~i~~~g~~~~v~l~~-~~~~l~a~it~~s~~-------~l~L~~G~~V~~~i 58 (67)
T 1fr3_A 7 NKLEATVKEIVKGTVMAKIVMDY-KGTELVAAITIDSVA-------DLDLVPGDKVTALV 58 (67)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEHHHHH-------HHTCCTTCEEEEEE
T ss_pred eEEEEEEEEEEeCCceEEEEEEe-CCCEEEEEeCHHHHH-------hCCCCCCCEEEEEE
Confidence 46899999998777433 3321 22 22222222211 12388999999886
No 93
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=42.40 E-value=8 Score=31.38 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=18.7
Q ss_pred cccceEEEEEEecccccCCchH
Q 044309 174 NKSKLVHSIMRHVAETLGIDLE 195 (259)
Q Consensus 174 ~~g~~v~g~V~~i~~~~G~fve 195 (259)
..|++++|+|+++++ ||+|++
T Consensus 80 ~~Gev~~G~V~~v~~-fG~fV~ 100 (172)
T 2c35_B 80 FKGEVVDAVVTQVNK-VGLFTE 100 (172)
T ss_dssp CTTCEEEEEEEEEET-TEEEEE
T ss_pred CCCCEEEEEEEEEeC-CEEEEE
Confidence 389999999999977 999984
No 94
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=41.42 E-value=63 Score=23.14 Aligned_cols=49 Identities=6% Similarity=0.026 Sum_probs=32.7
Q ss_pred EEEEEEEEeCceEEEEEccCCCEEEEEEccccccc------cccCc--cccccCCCeEEEEEEEEe
Q 044309 91 VMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRR------RIRSV--SSLIKVGRIEPVMVLRVD 148 (259)
Q Consensus 91 v~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~------~v~~~--~~~~kvGd~V~vkVi~vD 148 (259)
+.|+|++|..-. |.|.. + ++.+|.|. .+.+. -..+++||.|.+.+...+
T Consensus 6 ~~G~V~~vd~~~--iTi~H-~------pI~~l~wPaMTM~F~v~~~~~l~~lk~Gd~V~F~~~~~~ 62 (82)
T 2l55_A 6 AVGRIQSIGERS--LIIAH-E------AIPSAQWGAMTMEFAAPPAGLPQGLKAGDRVAFSFRLDP 62 (82)
T ss_dssp EEEEEEECCSSE--EEEEE-C------CCTTTTCCCEEEEEECCTTCCCSSCSTTCEEEEEEEEET
T ss_pred EeEEEEEEcccc--EEEec-C------CccccCCCceEEEEEcCChhHhhcCCCCCEEEEEEEECC
Confidence 589999998766 77753 2 35555552 22322 355999999999987653
No 95
>2jpp_A Translational repressor; RNA recognition, protein/RNA, CSRA, RSMA, shine-dalgarno; NMR {Pseudomonas fluorescens}
Probab=41.40 E-value=25 Score=24.91 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=26.3
Q ss_pred ccccccCCCeEEEEEEEEeCCCCeEEEEEeecch
Q 044309 130 VSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSE 163 (259)
Q Consensus 130 ~~~~~kvGd~V~vkVi~vD~~~gkI~LSlK~~~~ 163 (259)
+.+.+.+||.+.++|++++. +++.|.+.+...
T Consensus 8 ~GEsI~IGd~I~ItVl~v~g--~~VrLGI~APk~ 39 (70)
T 2jpp_A 8 VGESINIGDDITITILGVSG--QQVRIGINAPKD 39 (70)
T ss_dssp TTCEEEETTTEEEEEEEEET--TEEEEEEECCTT
T ss_pred CCCeEEECCCEEEEEEEEeC--CEEEEEEECCCC
Confidence 45678899999999999974 789998887643
No 96
>2bti_A Carbon storage regulator homolog; RMSA, CSRA, RNA binding protein; 2.0A {Yersinia enterocolitica} PDB: 1y00_A
Probab=40.79 E-value=28 Score=24.15 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=26.3
Q ss_pred ccccccCCCeEEEEEEEEeCCCCeEEEEEeecch
Q 044309 130 VSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSE 163 (259)
Q Consensus 130 ~~~~~kvGd~V~vkVi~vD~~~gkI~LSlK~~~~ 163 (259)
+.+.+.+||.+.++|++++. +++.|.+.+...
T Consensus 10 ~GE~I~Igd~I~I~Vl~i~g--~~VrlGI~AP~~ 41 (63)
T 2bti_A 10 VGETLMIGDEVTVTVLGVKG--NQVRIGVNAPKE 41 (63)
T ss_dssp TTCEEEETTTEEEEEEEEET--TEEEEEEEECTT
T ss_pred CCCeEEeCCCEEEEEEEEeC--CEEEEEEECCCC
Confidence 45678899999999999974 789998887643
No 97
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=39.47 E-value=37 Score=27.71 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=34.0
Q ss_pred cccCCCeEEEEEEEEeCCCCeEEEEEe------------------ecchhhHHHHHHhccccceEEEEEEe
Q 044309 133 LIKVGRIEPVMVLRVDKEKGYIDLSKR------------------RVSEEDIQACEERYNKSKLVHSIMRH 185 (259)
Q Consensus 133 ~~kvGd~V~vkVi~vD~~~gkI~LSlK------------------~~~~~~~~~~~~~~~~g~~v~g~V~~ 185 (259)
..+ ||.|.++|.++....-.+++.-. ++.....++..+.++.|+.+..+|..
T Consensus 55 ~p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~ 124 (179)
T 3m7n_A 55 IVK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG 124 (179)
T ss_dssp CCT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE
T ss_pred cCC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC
Confidence 357 99999999999764334444321 01111123455778999999999997
No 98
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=37.74 E-value=10 Score=32.36 Aligned_cols=21 Identities=14% Similarity=0.338 Sum_probs=19.0
Q ss_pred cccceEEEEEEecccccCCchH
Q 044309 174 NKSKLVHSIMRHVAETLGIDLE 195 (259)
Q Consensus 174 ~~g~~v~g~V~~i~~~~G~fve 195 (259)
..|++++|+|+++.+ ||+|++
T Consensus 82 ~vGev~~G~V~~vt~-fG~FVe 102 (215)
T 2b8k_G 82 FKGEVVDGTVVSCSQ-HGFEVQ 102 (215)
T ss_dssp CTTEEEEEEEEEEET-TEEEEE
T ss_pred CCCCEEEEEEEEEec-ceEEEE
Confidence 689999999999977 999984
No 99
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=37.18 E-value=3.1 Score=42.33 Aligned_cols=42 Identities=10% Similarity=0.212 Sum_probs=32.0
Q ss_pred HhccccceEEEEEEecccccCCch------HHH--HHhhchhhHHhhcCHHHHH
Q 044309 171 ERYNKSKLVHSIMRHVAETLGIDL------EEL--YVNIGWPLYWKYGHAFEAF 216 (259)
Q Consensus 171 ~~~~~g~~v~g~V~~i~~~~G~fv------e~~--~~~~sw~l~~~~~~~~~~f 216 (259)
+.+++|+++.|+|+++.+ ||+|| +++ .++++|. ...++.+.|
T Consensus 650 ~~l~vG~iv~G~V~~V~~-fGaFV~l~~~~eGLVhiS~Lsd~---~v~d~~~~~ 699 (785)
T 3bzc_A 650 KDLKPGMVLEGVVTNVTN-FGAFVDIGVHQDGLVHISALSEK---FVKDPYEVV 699 (785)
T ss_dssp TTCCTTCBCCCEEEEEET-TEEEEECSSSSEEEEETTTSCSS---CCSCHHHHC
T ss_pred hhcCCCCEEEEEEEEEec-CCeEEEeCCCcEEEEEHHHcCcc---ccCChhhee
Confidence 458899999999999977 99998 455 8888884 334555544
No 100
>1vpz_A Carbon storage regulator homolog; CSRA-like fold, structural genomics, joint center for struct genomics, JCSG; HET: MSE; 2.05A {Pseudomonas aeruginosa} SCOP: b.151.1.1
Probab=37.06 E-value=31 Score=24.69 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=26.6
Q ss_pred CccccccCCCeEEEEEEEEeCCCCeEEEEEeecch
Q 044309 129 SVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSE 163 (259)
Q Consensus 129 ~~~~~~kvGd~V~vkVi~vD~~~gkI~LSlK~~~~ 163 (259)
.+.+.+.+||.+.++|+++.. +++.|.+.+...
T Consensus 19 K~GEsI~IGddI~ItVl~i~g--~qVrLGI~APk~ 51 (73)
T 1vpz_A 19 RVGETLMVGDDVTVTVLGVKG--NQVRIGVNAPKE 51 (73)
T ss_dssp ETTCEEEETTTEEEEEEEEET--TEEEEEEEEETT
T ss_pred cCCCEEEeCCCEEEEEEEEeC--CEEEEEEECCCC
Confidence 346778899999999999974 789988877543
No 101
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=36.59 E-value=26 Score=30.00 Aligned_cols=54 Identities=6% Similarity=-0.041 Sum_probs=36.7
Q ss_pred cccCCCeEEEEEEEEeCCCCeEEEEEeecch--hhHHHHH------------HhccccceEEEEEEeccc
Q 044309 133 LIKVGRIEPVMVLRVDKEKGYIDLSKRRVSE--EDIQACE------------ERYNKSKLVHSIMRHVAE 188 (259)
Q Consensus 133 ~~kvGd~V~vkVi~vD~~~gkI~LSlK~~~~--~~~~~~~------------~~~~~g~~v~g~V~~i~~ 188 (259)
..++||.|.++|.++... ...+.+..... =+..+.. +.+++|+.+.++|..+.+
T Consensus 63 ~p~~GDiV~G~V~~v~~~--~~~V~I~~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~ 130 (235)
T 2z0s_A 63 VPQAGDVVIGLIQSVGIM--NWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDK 130 (235)
T ss_dssp CCCTTCCEEEEEEEECSS--EEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECT
T ss_pred CCCCCCEEEEEEEEEeCC--eEEEEeCCCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECC
Confidence 469999999999999763 44444432111 1222232 268999999999999864
No 102
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=36.37 E-value=15 Score=32.27 Aligned_cols=40 Identities=5% Similarity=0.158 Sum_probs=29.6
Q ss_pred ccccceEEEEEEecccccCCchH--------HH--HHhhchhhHHhhcCHHHHH
Q 044309 173 YNKSKLVHSIMRHVAETLGIDLE--------EL--YVNIGWPLYWKYGHAFEAF 216 (259)
Q Consensus 173 ~~~g~~v~g~V~~i~~~~G~fve--------~~--~~~~sw~l~~~~~~~~~~f 216 (259)
...|+++.|+|+++.+ +|+|++ +| .++++|. .+.++.+.|
T Consensus 9 ~~vG~iv~G~V~~I~~-~GaFV~l~e~~~~~GlihiSels~~---~v~~~~~~~ 58 (266)
T 3cw2_C 9 PSEGEILIATVKQVFD-YGSYVSLDEYGGLQAFLPWSEVSSK---WVKNIRDVL 58 (266)
T ss_dssp CCTTCEEEEEEEECCS-SSBEEEETTTTSEECBBCGGGSSCS---SCCCHHHHS
T ss_pred CCCCCEEEEEEEEEec-cEEEEEEcCCCCeEEEEEhHHcCcc---cccCHHHhC
Confidence 4689999999999977 999972 22 7788874 455555544
No 103
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=36.31 E-value=11 Score=33.40 Aligned_cols=32 Identities=16% Similarity=0.341 Sum_probs=25.1
Q ss_pred hcc-ccceEEEEEEecccccCCchH--------HH--HHhhchh
Q 044309 172 RYN-KSKLVHSIMRHVAETLGIDLE--------EL--YVNIGWP 204 (259)
Q Consensus 172 ~~~-~g~~v~g~V~~i~~~~G~fve--------~~--~~~~sw~ 204 (259)
.|. .|+++.|+|+++.+ ||+|++ ++ .++++|.
T Consensus 7 ~~p~~Gdiv~G~V~~I~~-fGaFV~L~e~~gieGlIhiSels~~ 49 (275)
T 3aev_A 7 EYPEEGEFVVATVKRIHN-YGAFLELDEYPGKEAFMHISEVAST 49 (275)
T ss_dssp CCCCTTCEEEEEEEEEET-TEEEEEETTSTTCEEEEEGGGSCSS
T ss_pred cCCCCCCEEEEEEEEEEC-cEEEEEECCCCCeEEEEEHHHcCcc
Confidence 444 89999999999976 999972 23 7888874
No 104
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=35.86 E-value=96 Score=22.56 Aligned_cols=39 Identities=21% Similarity=0.120 Sum_probs=30.0
Q ss_pred CCCCCcEEEEEEEEEeC--ceEEEEEccCCCEEEEEEccccc
Q 044309 84 YPEVDMAVMIQVKNIAD--MGAYVSLLEYNNIEGMILFSELS 123 (259)
Q Consensus 84 ~~~~G~iv~G~V~~I~~--~GafV~L~ey~~~eGllhisEls 123 (259)
|..=|..+.|+|.++.. ..+-|...+|++.+ .+++++|.
T Consensus 21 ys~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E-~V~~~~Lr 61 (88)
T 1g5v_A 21 WSEDGCIYPATIASIDFKRETCVVVYTGYGNRE-EQNLSDLL 61 (88)
T ss_dssp CTTTCCEEEEEEEEEETTTTEEEEEETTTCCEE-EEEGGGCB
T ss_pred ECCCCCEEEEEEEEecCCCCEEEEEEecCCCEE-EEcHHHcc
Confidence 43358899999999985 67888888887655 46888775
No 105
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=35.43 E-value=8.5 Score=41.06 Aligned_cols=33 Identities=9% Similarity=-0.028 Sum_probs=28.1
Q ss_pred HhccccceEEEEEEecccccCCch------HHH--HHhhchh
Q 044309 171 ERYNKSKLVHSIMRHVAETLGIDL------EEL--YVNIGWP 204 (259)
Q Consensus 171 ~~~~~g~~v~g~V~~i~~~~G~fv------e~~--~~~~sw~ 204 (259)
+.+++|+++.|+|+++.+ ||+|| +++ .++++|.
T Consensus 898 ~~l~~G~iv~G~V~~V~~-fGaFV~L~~gveGLVHiSelsd~ 938 (1219)
T 3psi_A 898 KTFFKGSIIPVRVERFWH-NDIICTTNSEVECVVNAQRHAGA 938 (1219)
T ss_dssp TTSCTTCEEEEEEEEECS-SCEEEECTTSCEEEECTTSSSST
T ss_pred hhCCCCCEEEEEEEEEec-ceEEEEeCCCceEEEEHHHcCCC
Confidence 788999999999999987 99998 344 7888884
No 106
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=33.71 E-value=13 Score=30.40 Aligned_cols=30 Identities=20% Similarity=0.109 Sum_probs=22.9
Q ss_pred ccccceEEEEEEecccccCCchH-----HH--HHhhch
Q 044309 173 YNKSKLVHSIMRHVAETLGIDLE-----EL--YVNIGW 203 (259)
Q Consensus 173 ~~~g~~v~g~V~~i~~~~G~fve-----~~--~~~~sw 203 (259)
...|+++.|+|+++.+ +|+|++ ++ .++++|
T Consensus 79 ~~~Gev~~G~V~~v~~-~G~fV~l~~~eglvhis~l~~ 115 (187)
T 1go3_E 79 PEMYELIEGEVVDVVE-FGSFVRLGPLDGLIHVSQIMD 115 (187)
T ss_dssp CCTTCEEEEEEEEEET-TEEEEECSSSEEEEEGGGSCS
T ss_pred cCCCCEEEEEEEEEeC-cEEEEEEcCccEEEEhHHhCC
Confidence 4578999999999976 999973 33 555655
No 107
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=33.41 E-value=1.3e+02 Score=21.60 Aligned_cols=53 Identities=15% Similarity=0.115 Sum_probs=33.4
Q ss_pred cEEEEEEEEEeCceEEEEEccCCCEEEEEEccccccc------cccCc--cccccCCCeEEEEEEEEe
Q 044309 89 MAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRR------RIRSV--SSLIKVGRIEPVMVLRVD 148 (259)
Q Consensus 89 ~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~------~v~~~--~~~~kvGd~V~vkVi~vD 148 (259)
-.+.|+|++|....=-|.|.. + ++.+|.|. .+.+. -+.+++||.|.+.+...+
T Consensus 16 ~~~~G~V~~id~~~~~iTi~H-~------pI~~l~wpaMTM~F~v~~~~~l~~lk~Gd~V~F~~~~~~ 76 (88)
T 2vb2_X 16 ISATGVVKGIDLESKKITIHH-D------PIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQG 76 (88)
T ss_dssp EEEEEEEEEEETTTTEEEEEE-C------CBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEEEEEET
T ss_pred eEEEEEEEEEcCCCCEEEEec-C------CcccCCCCceEEEEEcCChhhhhcCCCCCEEEEEEEEeC
Confidence 358999999975432356642 1 34555552 22222 355999999999987653
No 108
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=32.84 E-value=25 Score=26.59 Aligned_cols=65 Identities=11% Similarity=0.071 Sum_probs=44.1
Q ss_pred CcEEEEEEEEEeCceEE-EEEccCCCEEEEEEccccccccccCccccccCCCeEEEEEEEEe-CCCCeEEEEEe
Q 044309 88 DMAVMIQVKNIADMGAY-VSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVD-KEKGYIDLSKR 159 (259)
Q Consensus 88 G~iv~G~V~~I~~~Gaf-V~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~vD-~~~gkI~LSlK 159 (259)
...+.|+|+.....+.| |.+. +|..-+.|++-=- +. .--+..||.|.|.....| ..+|+|..-.+
T Consensus 19 e~e~~g~V~~~lgn~~~~V~l~--nG~~~la~i~GKm----Rk-~IwI~~GD~VlVe~~~yd~~~Kg~Iv~r~~ 85 (102)
T 1jt8_A 19 ENEILGIIEQMLGASRVRVRCL--DGKTRLGRIPGRL----KN-RIWVREGDVVIVKPWEVQGDQKCDIIWRYT 85 (102)
T ss_dssp SCCEEEEEECSSCSSEEEEEEE--TTEEEEEECCHHH----HH-HHCCCSCEEEEECCBCCTTSEEEEEEEESS
T ss_pred CCEEEEEEEEEcCCCEEEEEEC--CCCEEEEEEcccc----ee-eEEecCCCEEEEEeccCCCCceEEEEEEeC
Confidence 34688999998877765 5666 6899999987522 22 233789999998876665 44555555433
No 109
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=32.71 E-value=14 Score=30.08 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=18.5
Q ss_pred cccceEEEEEEecccccCCchH
Q 044309 174 NKSKLVHSIMRHVAETLGIDLE 195 (259)
Q Consensus 174 ~~g~~v~g~V~~i~~~~G~fve 195 (259)
..|++++|+|+++.+ +|+|++
T Consensus 80 ~~Gev~~G~V~~v~~-~G~fv~ 100 (180)
T 4ayb_E 80 VVQEVVEGEVLQVDN-YGVFVN 100 (180)
T ss_dssp CTTCEEEEEEEEEET-TEEEEE
T ss_pred cCCCEEEEEEeeecc-ceEEEE
Confidence 579999999999976 999983
No 110
>2jk8_A BEPA, putative cell filamentation protein (BEPA protein; T4SS, OB fold, FIC domain, substrate protein, protein transl cell adhesion; 2.80A {Bartonella henselae} PDB: 2vy3_A 2vza_A*
Probab=30.55 E-value=1e+02 Score=27.19 Aligned_cols=54 Identities=7% Similarity=-0.016 Sum_probs=44.2
Q ss_pred CCCCCcEEEEEEEEEeCceEEEEEccCCCEEEEEEccccccccccCccccccCCCeEEEEE
Q 044309 84 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMV 144 (259)
Q Consensus 84 ~~~~G~iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkV 144 (259)
.++.|..+.|...+-...++.++.. +.--+++...++.... +.++.||++.+++
T Consensus 247 ~~~~g~~~~g~~~~~~~~~~~~~~~---~~~~~~~k~~~~pe~~----~~l~~~~~~~~~~ 300 (302)
T 2jk8_A 247 VAKEGETYTGTYRGAGLEGFALNVK---GAYIIGNIDHLPPEQL----KILKPGDKITFTA 300 (302)
T ss_dssp ECCTTCEEEEEEEEECSSEEEEEBT---TBEEEEEGGGSCHHHH----HTCCTTCEEEEEC
T ss_pred eccCCCccceEEEecCCCeEEEEeC---CcEEEEECCccCHHHH----hccCCCCEEEEEe
Confidence 4558999999999998989999885 6788889988876544 3478999999875
No 111
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=28.91 E-value=1.2e+02 Score=19.78 Aligned_cols=39 Identities=15% Similarity=0.050 Sum_probs=29.7
Q ss_pred CCCCCcEEEEEEEEEeC--ceEEEEEccCCCEEEEEEccccc
Q 044309 84 YPEVDMAVMIQVKNIAD--MGAYVSLLEYNNIEGMILFSELS 123 (259)
Q Consensus 84 ~~~~G~iv~G~V~~I~~--~GafV~L~ey~~~eGllhisEls 123 (259)
+.+-|..+.|+|.++.+ ..+.|...+|+ -.-.++.++|.
T Consensus 14 ~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYG-n~e~v~~~~Lr 54 (59)
T 1mhn_A 14 WSEDGCIYPATIASIDFKRETCVVVYTGYG-NREEQNLSDLL 54 (59)
T ss_dssp CTTTSCEEEEEEEEEETTTTEEEEEETTTT-EEEEEEGGGCB
T ss_pred ECCCCCEEEEEEEEEcCCCCEEEEEEEcCC-CEEEEcHHHee
Confidence 43358899999999975 57888888875 55677888775
No 112
>1gut_A Mopii, molybdate binding protein II; transport protein; 1.50A {Clostridium pasteurianum} SCOP: b.40.6.1 PDB: 1gun_A 1guo_A 1gus_A 1gug_A
Probab=28.01 E-value=1.2e+02 Score=19.68 Aligned_cols=48 Identities=15% Similarity=0.059 Sum_probs=27.6
Q ss_pred EEEEEEEEEeCceEEEE--EccCCC--EEEEEEccccccccccCccccccCCCeEEEEE
Q 044309 90 AVMIQVKNIADMGAYVS--LLEYNN--IEGMILFSELSRRRIRSVSSLIKVGRIEPVMV 144 (259)
Q Consensus 90 iv~G~V~~I~~~GafV~--L~ey~~--~eGllhisEls~~~v~~~~~~~kvGd~V~vkV 144 (259)
.+.|+|+++...|..++ +.--++ +.+.++...+. .-.+++|+.+.+.+
T Consensus 8 ~l~g~V~~i~~~g~~~~V~l~~~~g~~l~a~it~~s~~-------~l~L~~G~~V~a~i 59 (68)
T 1gut_A 8 QLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVE-------ELGVKEGAELTAVV 59 (68)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTSCEEEEEEEHHHHH-------HHTCCTTCEEEEEC
T ss_pred EEEEEEEEEEeCCceEEEEEEeCCCCEEEEEeCHHHHH-------HCCCCCCCEEEEEE
Confidence 68999999988774433 321012 33333322211 12388999999875
No 113
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=27.91 E-value=1.6e+02 Score=20.75 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=32.8
Q ss_pred EEEEEEEEEeCceEEEEEccCCCEEEEEEccccccc------cccCc--cccccCCCeEEEEEEEEe
Q 044309 90 AVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRR------RIRSV--SSLIKVGRIEPVMVLRVD 148 (259)
Q Consensus 90 iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~------~v~~~--~~~~kvGd~V~vkVi~vD 148 (259)
.+.|+|++|....--|.|.. + |+.++.|. .+.+. -+.+++||.|.+.+...+
T Consensus 9 ~~~G~V~~id~~~~~iTi~H-~------pI~~l~wpaMTM~F~v~~~~~l~~lk~Gd~V~F~~~~~~ 68 (80)
T 2qcp_X 9 SATGVVKGIDLESKKITIHH-D------PIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQG 68 (80)
T ss_dssp EEEEEEEEEETTTTEEEEEE-C------CBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEEEEEET
T ss_pred EEEEEEEEEcCCCCEEEEEc-C------CcccCCCCceEEEEEccChhhhhcCCCCCEEEEEEEEeC
Confidence 58999999975432356642 1 34555542 22222 355999999999987653
No 114
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=26.98 E-value=79 Score=27.31 Aligned_cols=54 Identities=9% Similarity=-0.053 Sum_probs=35.6
Q ss_pred cccCCCeEEEEEEEEeCCCCeEEEEEeecch--hhHHHHH-----------HhccccceEEEEEEeccc
Q 044309 133 LIKVGRIEPVMVLRVDKEKGYIDLSKRRVSE--EDIQACE-----------ERYNKSKLVHSIMRHVAE 188 (259)
Q Consensus 133 ~~kvGd~V~vkVi~vD~~~gkI~LSlK~~~~--~~~~~~~-----------~~~~~g~~v~g~V~~i~~ 188 (259)
..++||.|.++|.++... ...+.+..... =+..+.. +.+++|+.+..+|..+.+
T Consensus 71 ~p~~GDiV~G~V~~v~~~--ga~VdI~~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~ 137 (251)
T 2je6_I 71 YPKINDIVIGLVEDVEIY--GWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDR 137 (251)
T ss_dssp CCCTTCEEEEEEEEECSS--EEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEET
T ss_pred CCCCCCEEEEEEEEEeCc--eEEEEcCCCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECC
Confidence 479999999999999764 44444432110 1122222 367899999999998854
No 115
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=24.91 E-value=1.3e+02 Score=19.22 Aligned_cols=39 Identities=23% Similarity=0.338 Sum_probs=26.2
Q ss_pred CCCCCcEEEEEEEEEeCce--EEEEEccCCCEEEEEEccccc
Q 044309 84 YPEVDMAVMIQVKNIADMG--AYVSLLEYNNIEGMILFSELS 123 (259)
Q Consensus 84 ~~~~G~iv~G~V~~I~~~G--afV~L~ey~~~eGllhisEls 123 (259)
+.+-|..+.|+|.++...+ +-|..-+|+ -...++.++|.
T Consensus 12 ~s~Dg~wYrA~I~~i~~~~~~~~V~fvDYG-n~e~v~~~~lr 52 (54)
T 3s6w_A 12 YWEDNKFYRAEVEALHSSGMTAVVKFIDYG-NYEEVLLSNIK 52 (54)
T ss_dssp ETTTTEEEEEEEEEC--CCSEEEEEETTTC-CEEEEEGGGEE
T ss_pred ECCCCCEEEEEEEEEeCCCCEEEEEEEccC-CeEEEeHHHEE
Confidence 3335889999999997533 667777775 45667877763
No 116
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=24.03 E-value=3.1e+02 Score=22.72 Aligned_cols=53 Identities=11% Similarity=-0.029 Sum_probs=36.2
Q ss_pred EEEEEEEEEeCceEEEEEccCCCEEEEEEccccccccccCccccccCCCeEEEEEEEEeCCC
Q 044309 90 AVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEK 151 (259)
Q Consensus 90 iv~G~V~~I~~~GafV~L~ey~~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~vD~~~ 151 (259)
.+.|+|..+.+..+.|+... -|++-+++.+.++ ..-..|+.+...+...-.++
T Consensus 4 ~l~G~l~~~~~~~vvidv~G-VGY~v~~~~~t~~--------~l~~~g~~v~l~~~~~vRed 56 (203)
T 1cuk_A 4 RLRGIIIEKQPPLVLIEVGG-VGYEVHMPMTCFY--------ELPEAGQEAIVFTHFVVRED 56 (203)
T ss_dssp EEEEEEEEEETTEEEEEETT-EEEEEECCHHHHT--------TCCCTTSEEEEEEEEEEETT
T ss_pred eEEEEEEEEeCCEEEEEECC-EEEEEEcCHHHHH--------hcCCCCCeEEEEEEEEEeeh
Confidence 57899999999999999952 1466665555544 11246999988776554443
No 117
>1t3o_A Carbon storage regulator; CSRA, CSRB, CSRC, mostly beta strands, RNA binding protein, beta sheet surface; NMR {Bacillus subtilis}
Probab=23.36 E-value=37 Score=25.46 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=26.5
Q ss_pred CccccccCCCeEEEEEEEEeCCCCeEEEEEeecch
Q 044309 129 SVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSE 163 (259)
Q Consensus 129 ~~~~~~kvGd~V~vkVi~vD~~~gkI~LSlK~~~~ 163 (259)
.+.+.+.+||.|.++|++++ .+++.|.+.+...
T Consensus 28 K~GEsI~IGddI~ItVl~i~--g~qVrLGI~APk~ 60 (95)
T 1t3o_A 28 KINEAIQIGADIEVKVIAVE--GDQVKLGIDAPKH 60 (95)
T ss_dssp TTCCCEEETTTEEECCCEEC--SSCEEEEEEESSC
T ss_pred cCCCeEEECCCEEEEEEEEe--CCEEEEEEECCCC
Confidence 35677889999999999996 4789888877543
No 118
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=23.27 E-value=12 Score=30.46 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=18.6
Q ss_pred cccceEEEEEEecccccCCchH
Q 044309 174 NKSKLVHSIMRHVAETLGIDLE 195 (259)
Q Consensus 174 ~~g~~v~g~V~~i~~~~G~fve 195 (259)
..|++++|+|+++.+ +|+|++
T Consensus 83 ~~Gev~~G~V~~v~~-fG~FV~ 103 (172)
T 3h0g_G 83 FRGEVVDAIVTTVNK-MGFFAN 103 (172)
T ss_dssp CTTCEEECCCCEEET-TEEECC
T ss_pred CCCCEEEEEEEEEEc-ceEEEE
Confidence 478999999999976 999985
No 119
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=22.89 E-value=1.7e+02 Score=19.44 Aligned_cols=39 Identities=13% Similarity=0.195 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEEEEEeC--ceEEEEEccCCCEEEEEEccccc
Q 044309 84 YPEVDMAVMIQVKNIAD--MGAYVSLLEYNNIEGMILFSELS 123 (259)
Q Consensus 84 ~~~~G~iv~G~V~~I~~--~GafV~L~ey~~~eGllhisEls 123 (259)
|..=|..+.|+|.++.+ ..+.|...+|+ -.-.++.++|.
T Consensus 19 ~s~Dg~wYrA~I~~v~~~~~~~~V~fvdYG-n~e~V~~~~Lr 59 (64)
T 4a4f_A 19 WSEDGQCYEAEIEEIDEENGTAAITFAGYG-NAEVTPLLNLK 59 (64)
T ss_dssp CTTTSSEEEEEEEEEETTTTEEEEEETTTT-EEEEEEGGGEE
T ss_pred ECCCCCEEEEEEEEEcCCCCEEEEEEEecC-CEEEEeHHHcE
Confidence 43358899999999985 46788888874 55667877764
No 120
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=22.46 E-value=2.3e+02 Score=27.04 Aligned_cols=70 Identities=14% Similarity=0.119 Sum_probs=40.7
Q ss_pred EEEEEEEEEeCce---EEEEEccCC-CEEEEEEcccc-ccccccCccccccCCCeEEEEEEEEeCCCCeEEEEEe
Q 044309 90 AVMIQVKNIADMG---AYVSLLEYN-NIEGMILFSEL-SRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKR 159 (259)
Q Consensus 90 iv~G~V~~I~~~G---afV~L~ey~-~~eGllhisEl-s~~~v~~~~~~~kvGd~V~vkVi~vD~~~gkI~LSlK 159 (259)
.+.|.|.++...| +|++|.+-. .+..++..+++ +........+.+..|+.|.|.=.=....+|.+.|...
T Consensus 59 ~v~Grv~~~R~~gkk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~~ge~ei~~~ 133 (521)
T 3bju_A 59 KVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPY 133 (521)
T ss_dssp EEEEEEEEEEESSSSEEEEEEEETTEEEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEECTTCCEEEEEE
T ss_pred EEEEEEEEEecCCCCcEEEEEEECCEEEEEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEecCCCCEEEEEe
Confidence 5899999998888 899997521 36666665554 1111111123478899887642212223565555443
No 121
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=21.62 E-value=3.9e+02 Score=25.33 Aligned_cols=71 Identities=14% Similarity=0.121 Sum_probs=41.6
Q ss_pred EEEEEEEEEeCce--EEEEEccCC-CEEEEEEccccccccccCccccccCCCeEEEEEEEEeCCCCeEEEEEee
Q 044309 90 AVMIQVKNIADMG--AYVSLLEYN-NIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRR 160 (259)
Q Consensus 90 iv~G~V~~I~~~G--afV~L~ey~-~~eGllhisEls~~~v~~~~~~~kvGd~V~vkVi~vD~~~gkI~LSlK~ 160 (259)
.+.|.|.++.+.| +|++|.+-. .+..++..++++.......-+.+..|+.|.|.=.=....+|.+.|....
T Consensus 68 ~v~Gwv~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~ge~ei~~~~ 141 (504)
T 1e1o_A 68 SVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQTGELSIHCTE 141 (504)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTEEEEEEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEECTTCCEEEEEEE
T ss_pred EEEEEEEEEecCCCcEEEEEEECCeeEEEEEECCcCCHHHHHHHHhcCCCCCEEEEEEEEEecCCceEEEEEEE
Confidence 4789999998766 899997521 3666666554432211101145789999876422122235666655444
No 122
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=21.20 E-value=69 Score=27.24 Aligned_cols=54 Identities=9% Similarity=0.003 Sum_probs=36.6
Q ss_pred cccCCCeEEEEEEEEeCCCCeEEEEEee----------cchh-hHHHHHHhccccceEEEEEEeccc
Q 044309 133 LIKVGRIEPVMVLRVDKEKGYIDLSKRR----------VSEE-DIQACEERYNKSKLVHSIMRHVAE 188 (259)
Q Consensus 133 ~~kvGd~V~vkVi~vD~~~gkI~LSlK~----------~~~~-~~~~~~~~~~~g~~v~g~V~~i~~ 188 (259)
..++||.|.++|.++... ...+.+.. +... ...+..+.+++|+.+..+|..+.+
T Consensus 54 ~p~~GDiV~G~V~~v~~~--~a~V~I~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~ 118 (229)
T 2ba0_A 54 TPSVGDVVIGIIREVAAN--GWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDP 118 (229)
T ss_dssp CCCTTCEEEEEEEEECSS--EEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECT
T ss_pred cCCCCCEEEEEEEEEeCC--eEEEEeCCCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECC
Confidence 368999999999999764 34444332 1110 112344678999999999999854
No 123
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=20.80 E-value=1.9e+02 Score=20.18 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=26.8
Q ss_pred CCcEEEEEEEEEeCce--EEEEEccCCCEEEEEEccccc
Q 044309 87 VDMAVMIQVKNIADMG--AYVSLLEYNNIEGMILFSELS 123 (259)
Q Consensus 87 ~G~iv~G~V~~I~~~G--afV~L~ey~~~eGllhisEls 123 (259)
-|..+.|+|.++...| +-|..-+|++ ...++.++|.
T Consensus 31 Dg~wYRA~I~~i~~~~~~~~V~fvDYGN-~e~V~~~~Lr 68 (77)
T 3pnw_C 31 DNKFYRAEVEALHSSGMTAVVKFIDYGN-YEEVLLSNIK 68 (77)
T ss_dssp TTEEEEEEEEEECTTSSEEEEEETTTCC-EEEEEGGGEE
T ss_pred CCCEEEEEEEEEeCCCCEEEEEEEcCCC-eEEEeHHHeE
Confidence 5788999999997543 6677777754 6677887775
Done!