BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044310
(231 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 11/199 (5%)
Query: 1 FVFDTKKIDQLRAKXXXXXXXXX-XXXEALTALIWKCARAASRSNLGYSRPSLSVHAMNV 59
FVFD +KI LRA+ + + A IWK +R+ G + V A+N+
Sbjct: 219 FVFDKEKIGALRAQASSASEEKNFSRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQAVNL 278
Query: 60 RAVAETPLPDNSVGNSVAYLTAQASEKEAETLQDLVCSFRKAKADFSRNGLKNLLENKSI 119
R+ PLP ++GN L A + + DL+ R + + LL+ +
Sbjct: 279 RSRMNPPLPHYAMGNIATLLFAAVDAEWDKDFPDLIGPLRTSLEKTEDDHNHELLKGMTC 338
Query: 120 FDIPQSIKAKFEKDEVDFYTFSSIVNFPYYEVADFGWGKPVHVTLPNYVLSNLIIIMDTN 179
+E + + +F+S +Y++ DFGWGKP+ + N ++MDT
Sbjct: 339 L---------YELEPQELLSFTSWCRLGFYDL-DFGWGKPLSACTTTFPKRNAALLMDTR 388
Query: 180 DGKGIEVLVTLSPEDMAFF 198
G G+E + ++ ++MA
Sbjct: 389 SGDGVEAWLPMAEDEMAML 407
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 72/177 (40%), Gaps = 8/177 (4%)
Query: 27 EALTALIWKCARAASRSNLGYSRPSLSVHAMNVRAVAETPLPDNSVGNSVAYLT--AQAS 84
E L +W+CA A L + + A + RA LP GN + T A A
Sbjct: 258 EMLAGHVWRCACKAR--GLEVDQGTKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAG 315
Query: 85 EKEAETLQDLVCSFRKAKADFSRNGLKNLLENKSIFDIPQSIKAKFEKDEVDFYTFSSIV 144
+ E + + A A + L++ L+ + +++ + +S V
Sbjct: 316 DLEFKPVWYAASKIHDALARMDNDYLRSALDYLELQPDLKALVRGAHTFKCPNLGITSWV 375
Query: 145 NFPYYEVADFGWGKPVHVTLPNYVLSNLIIIM--DTNDGKGIEVLVTLSPEDMAFFE 199
P ++ ADFGWG+P+ + L I+ TNDG + V ++L E M F+
Sbjct: 376 RLPIHD-ADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGS-MSVAISLQGEHMKLFQ 430
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 72/177 (40%), Gaps = 8/177 (4%)
Query: 27 EALTALIWKCARAASRSNLGYSRPSLSVHAMNVRAVAETPLPDNSVGNSVAYLT--AQAS 84
E L +W+CA A L + + A + RA LP GN + T A A
Sbjct: 261 EMLAGHVWRCACKAR--GLEVDQGTKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAG 318
Query: 85 EKEAETLQDLVCSFRKAKADFSRNGLKNLLENKSIFDIPQSIKAKFEKDEVDFYTFSSIV 144
+ E + + A A + L++ L+ + +++ + +S V
Sbjct: 319 DLEFKPVWYAASKIHDALARMDNDYLRSALDYLELQPDLKALVRGAHTFKXPNLGITSWV 378
Query: 145 NFPYYEVADFGWGKPVHVTLPNYVLSNLIIIM--DTNDGKGIEVLVTLSPEDMAFFE 199
P ++ ADFGWG+P+ + L I+ TNDG + V ++L E M F+
Sbjct: 379 RLPIHD-ADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGS-MSVAISLQGEHMKLFQ 433
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 72/177 (40%), Gaps = 8/177 (4%)
Query: 27 EALTALIWKCARAASRSNLGYSRPSLSVHAMNVRAVAETPLPDNSVGNSVAYLT--AQAS 84
E L +W+CA A L + + A + RA LP GN + T A A
Sbjct: 261 EMLAGHVWRCACKAR--GLEVDQGTKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAG 318
Query: 85 EKEAETLQDLVCSFRKAKADFSRNGLKNLLENKSIFDIPQSIKAKFEKDEVDFYTFSSIV 144
+ E + + A A + L++ L+ + +++ + +S V
Sbjct: 319 DLEFKPVWYAASKIHDALARMDNDYLRSALDYLELQPDLKALVRGAHTFKXPNLGITSWV 378
Query: 145 NFPYYEVADFGWGKPVHVTLPNYVLSNLIIIM--DTNDGKGIEVLVTLSPEDMAFFE 199
P ++ ADFGWG+P+ + L I+ TNDG + V ++L E M F+
Sbjct: 379 RLPIHD-ADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGS-MSVAISLQGEHMKLFQ 433
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 27/141 (19%)
Query: 31 ALIWKC---ARAASRSNLGYSRPSLSVHAMNVRAVAETPLPDNSVGNSVAYLTAQASE-- 85
A +W C + AA+ + + A + RA PLP + GN++ A+ +
Sbjct: 275 AYVWTCIIKSEAATGEEIDENGXEFFGCAADCRAQFNPPLPPSYFGNALVGYVARTRQVD 334
Query: 86 ---KEAETLQ-DLVC-SFRKAKADFSRNGLKNLLENKSIFDIPQSIKAKFEKDEVDFYTF 140
KE T+ +L+ + RK D + + + S F E D+VD
Sbjct: 335 LAGKEGFTIAVELIGEAIRKRXKD------EEWILSGSWFK---------EYDKVDAKRS 379
Query: 141 SSIVNFPYYEV--ADFGWGKP 159
S+ P ++ ADFGWG+P
Sbjct: 380 LSVAGSPKLDLYAADFGWGRP 400
>pdb|1Z68|A Chain A, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
pdb|1Z68|B Chain B, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
Length = 719
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 3/105 (2%)
Query: 124 QSIKAKFEKDEVDFYTFSSIVNFPYYEVADFGWGKPVHVTLPNYVLSNLIIIMDTNDGKG 183
+ + K+ +YT S YY + +G G P+ + I+ + + +
Sbjct: 399 KCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILEENKELEN 458
Query: 184 IEVLVTLSPEDMAFFERDQELLAFAAINPPVLDVSIRKNESPLLI 228
+ L E++ E D+ L + I PP D R + PLLI
Sbjct: 459 ALKNIQLPKEEIKKLEVDEITLWYKMILPPQFD---RSKKYPLLI 500
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,932,576
Number of Sequences: 62578
Number of extensions: 227339
Number of successful extensions: 483
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 480
Number of HSP's gapped (non-prelim): 8
length of query: 231
length of database: 14,973,337
effective HSP length: 96
effective length of query: 135
effective length of database: 8,965,849
effective search space: 1210389615
effective search space used: 1210389615
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)