BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044313
(344 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W6K|A Chain A, Structure Of Human Osc In Complex With Lanosterol
Length = 732
Score = 223 bits (567), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 124/321 (38%), Positives = 186/321 (57%), Gaps = 15/321 (4%)
Query: 28 ATTALRRAVN---IFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEHRKE 84
A TA A+N + LQ+ GHW D GPLF ++I ++ I +R+E
Sbjct: 70 AHTAFEGALNGMTFYVGLQAEDGHWTGDYGGPLFLLPGLLITCHVA---RIPLPAGYREE 126
Query: 85 MLRYICNHQNEDGGWGLHVEGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDR 144
++RY+ + Q DGGWGLH+E ST+FGT NY+ +R+LG GPD + RAR + +
Sbjct: 127 IVRYLRSVQLPDGGWGLHIEDKSTVFGTALNYVSLRILGVGPD---DPDLVRARNILHKK 183
Query: 145 GGATGIPSWGKTWLSILGVYDWSGCNPMPPEFWKLPHFLPISPGKLLCYCRLTYMPMSYF 204
GGA IPSWGK WL++L VY W G N + PE W P + P P L C+CR Y+PMSY
Sbjct: 184 GGAVAIPSWGKFWLAVLNVYSWEGLNTLFPEMWLFPDWAPAHPSTLWCHCRQVYLPMSYC 243
Query: 205 YGKRFVGPITPLVLQLREEIYIQPYDEINWSKLRHLCAKEDLFFPHTTVQNLLWDALHNQ 264
Y R PLV LR+E+Y++ + I+W R+ A ++L+ PH+ + +++ AL N
Sbjct: 244 YAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTPHSWLLRVVY-ALLNL 302
Query: 265 VEPVLNRWPLNKLREKSLEAAMTHIHYEDEASRYMTIGCVEKPLNMLSCWAED-PNGDYF 323
E + LR+++++ HI +D ++ ++IG + K +NML W D P F
Sbjct: 303 YEHHHS----AHLRQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGPASTAF 358
Query: 324 KKHLARIGEYFWMGEDGMRVQ 344
++H++RI +Y WMG DGM++Q
Sbjct: 359 QEHVSRIPDYLWMGLDGMKMQ 379
>pdb|1W6J|A Chain A, Structure Of Human Osc In Complex With Ro 48-8071
Length = 732
Score = 223 bits (567), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 124/321 (38%), Positives = 186/321 (57%), Gaps = 15/321 (4%)
Query: 28 ATTALRRAVN---IFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEHRKE 84
A TA A+N + LQ+ GHW D GPLF ++I ++ I +R+E
Sbjct: 70 AHTAFEGALNGMTFYVGLQAEDGHWTGDYGGPLFLLPGLLITCHVA---RIPLPAGYREE 126
Query: 85 MLRYICNHQNEDGGWGLHVEGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDR 144
++RY+ + Q DGGWGLH+E ST+FGT NY+ +R+LG GPD + RAR + +
Sbjct: 127 IVRYLRSVQLPDGGWGLHIEDKSTVFGTALNYVSLRILGVGPD---DPDLVRARNILHKK 183
Query: 145 GGATGIPSWGKTWLSILGVYDWSGCNPMPPEFWKLPHFLPISPGKLLCYCRLTYMPMSYF 204
GGA IPSWGK WL++L VY W G N + PE W P + P P L C+CR Y+PMSY
Sbjct: 184 GGAVAIPSWGKFWLAVLNVYSWEGLNTLFPEMWLFPDWAPAHPSTLWCHCRQVYLPMSYC 243
Query: 205 YGKRFVGPITPLVLQLREEIYIQPYDEINWSKLRHLCAKEDLFFPHTTVQNLLWDALHNQ 264
Y R PLV LR+E+Y++ + I+W R+ A ++L+ PH+ + +++ AL N
Sbjct: 244 YAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTPHSWLLRVVY-ALLNL 302
Query: 265 VEPVLNRWPLNKLREKSLEAAMTHIHYEDEASRYMTIGCVEKPLNMLSCWAED-PNGDYF 323
E + LR+++++ HI +D ++ ++IG + K +NML W D P F
Sbjct: 303 YEHHHS----AHLRQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGPASTAF 358
Query: 324 KKHLARIGEYFWMGEDGMRVQ 344
++H++RI +Y WMG DGM++Q
Sbjct: 359 QEHVSRIPDYLWMGLDGMKMQ 379
>pdb|1GSZ|A Chain A, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1GSZ|B Chain B, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1GSZ|C Chain C, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1H35|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H35|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H35|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3B|A Chain A, Squalene-Hopene Cyclase
pdb|1H3B|B Chain B, Squalene-Hopene Cyclase
pdb|1H3B|C Chain C, Squalene-Hopene Cyclase
pdb|1H3C|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3C|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3C|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6H|A Chain A, Squalene-Hopene Cyclase
pdb|1O6H|B Chain B, Squalene-Hopene Cyclase
pdb|1O6H|C Chain C, Squalene-Hopene Cyclase
pdb|1O6Q|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6Q|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6Q|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1UMP|A Chain A, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1UMP|B Chain B, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1UMP|C Chain C, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1SQC|A Chain A, Squalene-Hopene-Cyclase From Alicyclobacillus
Acidocaldarius
Length = 631
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 8/190 (4%)
Query: 24 TPEIATTALRRAVNIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEHRK 83
P A T L RAV + Q G+W GPL N M + H+ + +
Sbjct: 8 APAYART-LDRAVEYLLSCQKDEGYW----WGPLLSNVTMEAEYVLLCHILDRVDRDRME 62
Query: 84 EMLRYICNHQNEDGGWGLHVEGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILD 143
++ RY+ + Q EDG W L+ G + T+ Y+ ++ +G D +A ++I
Sbjct: 63 KIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRD---EEPMQKALRFIQS 119
Query: 144 RGGATGIPSWGKTWLSILGVYDWSGCNPMPPEFWKLPHFLPISPGKLLCYCRLTYMPMSY 203
+GG + + WL+++G Y W +PPE L +P++ + + R T + +S
Sbjct: 120 QGGIESSRVFTRMWLALVGEYPWEKVPMVPPEIMFLGKRMPLNIYEFGSWARATVVALSI 179
Query: 204 FYGKRFVGPI 213
++ V P+
Sbjct: 180 VMSRQPVFPL 189
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 28 ATTALRRAVNIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLR 87
A +RRAV Q G W + T V+ + I + ++ L
Sbjct: 464 AWKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKA--VGIDTREPYIQKALD 521
Query: 88 YICNHQNEDGGWG 100
++ HQN DGGWG
Sbjct: 522 WVEQHQNPDGGWG 534
>pdb|2SQC|A Chain A, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
pdb|2SQC|B Chain B, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
Length = 631
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 8/190 (4%)
Query: 24 TPEIATTALRRAVNIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEHRK 83
P A T L RAV + Q G+W GPL N M + H+ + +
Sbjct: 8 APAYART-LDRAVEYLLSCQKDEGYW----WGPLLSNVTMEAEYVLLCHILDRVDRDRME 62
Query: 84 EMLRYICNHQNEDGGWGLHVEGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILD 143
++ RY+ + Q EDG W L+ G + T+ Y+ ++ +G D +A ++I
Sbjct: 63 KIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRD---EEPMQKALRFIQS 119
Query: 144 RGGATGIPSWGKTWLSILGVYDWSGCNPMPPEFWKLPHFLPISPGKLLCYCRLTYMPMSY 203
+GG + + WL+++G Y W +PPE L +P++ + + R T + +S
Sbjct: 120 QGGIESSRVFTRMWLALVGEYPWEKVPMVPPEIMFLGKRMPLNIYEFGSWARATVVALSI 179
Query: 204 FYGKRFVGPI 213
++ V P+
Sbjct: 180 VMSRQPVFPL 189
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 28 ATTALRRAVNIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLR 87
A +RRAV Q G W + T V+ + I + ++ L
Sbjct: 464 AWKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKA--VGIDTREPYIQKALD 521
Query: 88 YICNHQNEDGGWG 100
++ HQN DGGWG
Sbjct: 522 WVEQHQNPDGGWG 534
>pdb|3SQC|A Chain A, Squalene-Hopene Cyclase
pdb|3SQC|B Chain B, Squalene-Hopene Cyclase
pdb|3SQC|C Chain C, Squalene-Hopene Cyclase
Length = 631
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 8/190 (4%)
Query: 24 TPEIATTALRRAVNIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEHRK 83
P A T L RAV + Q G+W GPL N M + H+ + +
Sbjct: 8 APAYART-LDRAVEYLLSCQKDEGYW----WGPLLSNVTMEAEYVLLCHILDRVDRDRME 62
Query: 84 EMLRYICNHQNEDGGWGLHVEGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILD 143
++ RY+ + Q EDG W L+ G + T+ Y+ ++ +G D +A ++I
Sbjct: 63 KIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRD---EEPMQKALRFIQS 119
Query: 144 RGGATGIPSWGKTWLSILGVYDWSGCNPMPPEFWKLPHFLPISPGKLLCYCRLTYMPMSY 203
+GG + + WL+++G Y W +PPE L +P++ + + R T + +S
Sbjct: 120 QGGIESSRVFTRMWLALVGEYPWEKVPMVPPEIMFLGKRMPLNIYEFGSWARATVVALSI 179
Query: 204 FYGKRFVGPI 213
++ V P+
Sbjct: 180 VMSRQPVFPL 189
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 28 ATTALRRAVNIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLR 87
A +RRAV Q G W + T V+ + I + ++ L
Sbjct: 464 AWKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKA--VGIDTREPYIQKALD 521
Query: 88 YICNHQNEDGGWG 100
++ HQN DGGWG
Sbjct: 522 WVEQHQNPDGGWG 534
>pdb|1TWY|A Chain A, Crystal Structure Of An Abc-Type Phosphate Transport
Receptor From Vibrio Cholerae
pdb|1TWY|B Chain B, Crystal Structure Of An Abc-Type Phosphate Transport
Receptor From Vibrio Cholerae
pdb|1TWY|C Chain C, Crystal Structure Of An Abc-Type Phosphate Transport
Receptor From Vibrio Cholerae
pdb|1TWY|D Chain D, Crystal Structure Of An Abc-Type Phosphate Transport
Receptor From Vibrio Cholerae
pdb|1TWY|E Chain E, Crystal Structure Of An Abc-Type Phosphate Transport
Receptor From Vibrio Cholerae
pdb|1TWY|F Chain F, Crystal Structure Of An Abc-Type Phosphate Transport
Receptor From Vibrio Cholerae
pdb|1TWY|G Chain G, Crystal Structure Of An Abc-Type Phosphate Transport
Receptor From Vibrio Cholerae
pdb|1TWY|H Chain H, Crystal Structure Of An Abc-Type Phosphate Transport
Receptor From Vibrio Cholerae
Length = 290
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 287 THIHYEDEASRYMTIGCVEKPLNMLSCWAEDPNGDYFKKHLARIGEYFWM 336
T +++ +A +++IG V+K + + DP D KH ++ F +
Sbjct: 192 TLVNHNTQAVGFISIGSVDKSVKAIQFEKADPTSDNIAKHTYQLSRPFLI 241
>pdb|3MPZ|A Chain A, Crystal Structure Of Cytidine Deaminase From Mycobacterium
S
pdb|3MPZ|B Chain B, Crystal Structure Of Cytidine Deaminase From Mycobacterium
S
pdb|3MPZ|C Chain C, Crystal Structure Of Cytidine Deaminase From Mycobacterium
S
pdb|3MPZ|D Chain D, Crystal Structure Of Cytidine Deaminase From Mycobacterium
S
Length = 150
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 90 CNHQNEDGGWGLHVEG------HSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILD 143
CN +N G GL E HS G + C+ GPDGG C R R+ +L+
Sbjct: 63 CNVENVSYGLGLCAECAVVCALHSGGGGRLVALSCV-----GPDGGVLMPCGRCRQVLLE 117
Query: 144 RGG 146
GG
Sbjct: 118 HGG 120
>pdb|1F46|A Chain A, The Bacterial Cell-Division Protein Zipa And Its
Interaction With An Ftsz Fragment Revealed By X-Ray
Crystallography
pdb|1F46|B Chain B, The Bacterial Cell-Division Protein Zipa And Its
Interaction With An Ftsz Fragment Revealed By X-Ray
Crystallography
Length = 140
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 20 GEEITPEIATTALRRAVNIFSALQSSHGHWPADNSGPLFFN 60
G E+ E+ ++++A IF + H H D SGP F+
Sbjct: 16 GSELNGELLLNSIQQAGFIFGDMNIYHRHLSPDGSGPALFS 56
>pdb|1F47|B Chain B, The Bacterial Cell-Division Protein Zipa And Its
Interaction With An Ftsz Fragment Revealed By X-Ray
Crystallography
pdb|1S1J|A Chain A, Crystal Structure Of Zipa In Complex With
Indoloquinolizin Inhibitor 1
pdb|1S1J|B Chain B, Crystal Structure Of Zipa In Complex With
Indoloquinolizin Inhibitor 1
pdb|1S1S|A Chain A, Crystal Structure Of Zipa In Complex With
Indoloquinolizin 10b
pdb|1S1S|B Chain B, Crystal Structure Of Zipa In Complex With
Indoloquinolizin 10b
Length = 144
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 20 GEEITPEIATTALRRAVNIFSALQSSHGHWPADNSGPLFFN 60
G E+ E+ ++++A IF + H H D SGP F+
Sbjct: 20 GSELNGELLLNSIQQAGFIFGDMNIYHRHLSPDGSGPALFS 60
>pdb|1Y2G|A Chain A, Crystal Structure Of Zipa In Complex With An Inhibitor
pdb|1Y2G|B Chain B, Crystal Structure Of Zipa In Complex With An Inhibitor
Length = 140
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 20 GEEITPEIATTALRRAVNIFSALQSSHGHWPADNSGPLFFN 60
G E+ E+ ++++A IF + H H D SGP F+
Sbjct: 16 GSELNGELLLNSIQQAGFIFGDMNIYHRHLSPDGSGPALFS 56
>pdb|1Y2F|A Chain A, Crystal Structure Of Zipa With An Inhibitor
Length = 139
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 20 GEEITPEIATTALRRAVNIFSALQSSHGHWPADNSGPLFFN 60
G E+ E+ ++++A IF + H H D SGP F+
Sbjct: 15 GSELNGELLLNSIQQAGFIFGDMNIYHRHLSPDGSGPALFS 55
>pdb|1F7W|A Chain A, Solution Structure Of C-Terminal Domain Zipa
pdb|1F7X|A Chain A, Solution Structure Of C-Terminal Domain Zipa
Length = 144
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 20 GEEITPEIATTALRRAVNIFSALQSSHGHWPADNSGPLFFN 60
G E+ E+ ++++A IF + H H D SGP F+
Sbjct: 20 GSELNGELLLNSIQQAGFIFGDMNIYHRHLSPDGSGPALFS 60
>pdb|1US1|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1US1|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|2Y73|A Chain A, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y73|B Chain B, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y74|A Chain A, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
pdb|2Y74|B Chain B, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
Length = 763
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 112 TVFNYICMRLLGEGPDGGENS 132
T+F +C+ L+G G DGGE S
Sbjct: 16 TIFALVCVLLVGRGGDGGEPS 36
>pdb|3CUE|A Chain A, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|G Chain G, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|M Chain M, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|S Chain S, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 219
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 222 EEIYIQPYDEINWSKLRHLCAKEDLFFPHTTVQNLLWDALHNQVEP 267
++ + +P+ N S LR LC + F + T+ L + A+ + V P
Sbjct: 104 DDFFKEPFTNWNKSGLRQLCTDQFTMFIYQTLTGLKFVAISSSVMP 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.473
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,942,605
Number of Sequences: 62578
Number of extensions: 528755
Number of successful extensions: 1053
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1018
Number of HSP's gapped (non-prelim): 26
length of query: 344
length of database: 14,973,337
effective HSP length: 100
effective length of query: 244
effective length of database: 8,715,537
effective search space: 2126591028
effective search space used: 2126591028
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)