Query 044313
Match_columns 344
No_of_seqs 183 out of 1246
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 13:26:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044313.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044313hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03012 Camelliol C synthase 100.0 9.4E-98 2E-102 779.6 27.8 343 1-344 69-412 (759)
2 PLN02993 lupeol synthase 100.0 7.9E-97 2E-101 773.9 28.2 343 1-344 69-412 (763)
3 KOG0497 Oxidosqualene-lanoster 100.0 6.7E-87 1.4E-91 675.6 18.1 342 2-344 70-411 (760)
4 TIGR03463 osq_cycl 2,3-oxidosq 100.0 2E-80 4.4E-85 647.4 23.6 297 37-344 2-300 (634)
5 cd02892 SQCY_1 Squalene cyclas 100.0 1.4E-76 3.1E-81 620.1 23.2 299 32-343 1-300 (634)
6 TIGR01507 hopene_cyclase squal 100.0 2.3E-72 4.9E-77 586.6 24.3 294 25-344 11-310 (635)
7 TIGR01787 squalene_cyclas squa 100.0 1.8E-71 4E-76 579.2 22.1 289 31-344 1-290 (621)
8 COG1657 SqhC Squalene cyclase 99.7 6.4E-19 1.4E-23 178.4 4.8 189 119-342 1-191 (517)
9 PF13243 Prenyltrans_1: Prenyl 99.7 9.2E-19 2E-23 143.0 1.9 106 32-145 1-106 (109)
10 PLN03012 Camelliol C synthase 99.7 1.1E-16 2.3E-21 169.4 13.0 119 26-148 586-717 (759)
11 PLN02993 lupeol synthase 99.7 3.5E-16 7.5E-21 165.8 13.3 120 25-148 585-717 (763)
12 TIGR03463 osq_cycl 2,3-oxidosq 99.6 6.1E-15 1.3E-19 155.1 12.7 117 25-148 472-599 (634)
13 PF13249 Prenyltrans_2: Prenyl 99.6 3.6E-15 7.8E-20 121.9 6.2 102 36-146 1-106 (113)
14 TIGR01507 hopene_cyclase squal 99.5 2.9E-14 6.3E-19 150.0 12.4 113 29-148 470-593 (635)
15 TIGR01787 squalene_cyclas squa 99.5 1.7E-13 3.7E-18 144.0 12.5 116 27-148 457-583 (621)
16 cd02892 SQCY_1 Squalene cyclas 99.4 2E-12 4.3E-17 136.4 12.2 115 27-147 473-598 (634)
17 KOG0497 Oxidosqualene-lanoster 99.4 1.7E-12 3.6E-17 134.0 9.3 118 24-146 583-714 (760)
18 cd02897 A2M_2 Proteins similar 99.3 3.3E-11 7.2E-16 115.3 14.8 117 26-146 45-174 (292)
19 cd00688 ISOPREN_C2_like This g 99.3 1E-10 2.2E-15 108.1 13.7 120 25-148 47-176 (300)
20 cd02889 SQCY Squalene cyclase 99.2 9.9E-11 2.1E-15 113.8 12.2 115 27-148 188-313 (348)
21 cd02889 SQCY Squalene cyclase 99.2 4.8E-11 1E-15 115.9 9.8 113 32-147 1-132 (348)
22 cd02890 PTase Protein prenyltr 99.2 2.3E-10 5E-15 109.0 12.8 106 32-145 100-207 (286)
23 cd02894 GGTase-II Geranylgeran 99.1 6E-10 1.3E-14 106.8 13.4 116 27-150 97-218 (287)
24 cd02891 A2M_like Proteins simi 99.1 8.4E-10 1.8E-14 104.0 14.1 129 25-159 44-184 (282)
25 cd02896 complement_C3_C4_C5 Pr 99.1 1.2E-09 2.6E-14 105.2 14.2 120 26-146 48-184 (297)
26 cd00688 ISOPREN_C2_like This g 99.0 3.4E-09 7.3E-14 97.9 11.5 112 28-148 102-222 (300)
27 PLN03201 RAB geranylgeranyl tr 98.9 2E-08 4.2E-13 97.9 13.5 125 32-164 106-245 (316)
28 cd02890 PTase Protein prenyltr 98.9 1.1E-08 2.3E-13 97.6 11.2 113 29-147 46-161 (286)
29 cd02895 GGTase-I Geranylgerany 98.9 1.5E-08 3.2E-13 98.3 12.3 109 32-145 114-229 (307)
30 PF00432 Prenyltrans: Prenyltr 98.8 9.7E-09 2.1E-13 71.3 4.8 43 81-123 2-44 (44)
31 cd02893 FTase Protein farnesyl 98.7 1.9E-07 4.1E-12 90.3 13.4 130 31-165 48-192 (299)
32 PF13249 Prenyltrans_2: Prenyl 98.7 2.1E-08 4.5E-13 81.7 4.0 63 35-100 47-112 (113)
33 cd02893 FTase Protein farnesyl 98.6 3E-07 6.4E-12 88.9 12.5 105 33-145 101-207 (299)
34 PF13243 Prenyltrans_1: Prenyl 98.6 9.1E-09 2E-13 83.8 1.4 64 82-150 1-64 (109)
35 cd02897 A2M_2 Proteins similar 98.6 3.1E-07 6.8E-12 87.9 11.8 112 29-147 101-272 (292)
36 PLN03201 RAB geranylgeranyl tr 98.6 2.1E-07 4.6E-12 90.6 10.6 107 32-146 58-166 (316)
37 cd02894 GGTase-II Geranylgeran 98.6 2.6E-07 5.6E-12 88.6 10.8 105 32-144 150-256 (287)
38 PLN02710 farnesyltranstransfer 98.6 7E-07 1.5E-11 90.3 12.7 126 33-166 146-286 (439)
39 cd02896 complement_C3_C4_C5 Pr 98.5 6.4E-07 1.4E-11 86.3 10.3 111 29-145 102-275 (297)
40 cd02895 GGTase-I Geranylgerany 98.5 9.9E-07 2.1E-11 85.6 10.5 111 33-148 52-181 (307)
41 PLN02710 farnesyltranstransfer 98.5 1.4E-06 3.1E-11 88.1 11.9 129 32-165 94-237 (439)
42 COG5029 CAL1 Prenyltransferase 98.4 7.4E-07 1.6E-11 85.4 8.8 106 34-146 130-237 (342)
43 KOG0366 Protein geranylgeranyl 98.3 5.3E-06 1.1E-10 77.9 10.8 88 34-125 118-207 (329)
44 PF07678 A2M_comp: A-macroglob 98.3 1.9E-06 4.1E-11 80.9 6.8 107 34-144 1-125 (246)
45 KOG0367 Protein geranylgeranyl 98.0 2.3E-05 5.1E-10 74.7 7.9 107 35-145 130-241 (347)
46 TIGR02474 pec_lyase pectate ly 97.9 0.00014 3.1E-09 69.8 11.2 117 26-145 63-219 (290)
47 cd02891 A2M_like Proteins simi 97.8 4.5E-05 9.8E-10 71.8 6.4 65 80-147 49-116 (282)
48 KOG0365 Beta subunit of farnes 97.8 0.00014 3.1E-09 70.7 9.5 118 29-151 119-242 (423)
49 TIGR02474 pec_lyase pectate ly 97.6 0.00023 4.9E-09 68.5 8.8 70 76-145 63-150 (290)
50 COG1657 SqhC Squalene cyclase 97.6 9.4E-05 2E-09 76.0 6.4 198 30-253 221-439 (517)
51 KOG0367 Protein geranylgeranyl 97.1 0.0058 1.3E-07 58.7 10.9 134 33-176 177-331 (347)
52 PLN02592 ent-copalyl diphospha 96.8 0.0014 3E-08 71.1 4.9 83 51-144 91-176 (800)
53 PF07678 A2M_comp: A-macroglob 96.4 0.0052 1.1E-07 57.6 5.6 100 29-144 48-161 (246)
54 PF00432 Prenyltrans: Prenyltr 96.3 0.0084 1.8E-07 41.3 4.7 40 32-71 3-44 (44)
55 PLN02279 ent-kaur-16-ene synth 96.3 0.0044 9.5E-08 67.3 4.8 82 52-143 50-135 (784)
56 COG5029 CAL1 Prenyltransferase 96.3 0.016 3.4E-07 56.2 7.8 112 32-151 77-197 (342)
57 KOG0365 Beta subunit of farnes 96.2 0.025 5.4E-07 55.5 9.0 113 26-146 165-281 (423)
58 KOG0366 Protein geranylgeranyl 96.0 0.081 1.8E-06 50.3 10.9 140 31-181 163-317 (329)
59 PF09492 Pec_lyase: Pectic aci 94.9 0.13 2.8E-06 49.7 8.7 115 26-143 58-212 (289)
60 COG1689 Uncharacterized protei 93.9 0.13 2.8E-06 47.8 5.7 84 81-169 7-91 (274)
61 PF01122 Cobalamin_bind: Eukar 93.8 0.29 6.4E-06 48.1 8.4 98 58-163 187-293 (326)
62 PF09492 Pec_lyase: Pectic aci 92.8 0.18 3.9E-06 48.7 5.2 67 79-146 61-146 (289)
63 COG1689 Uncharacterized protei 89.6 1 2.2E-05 42.0 6.4 98 32-149 8-116 (274)
64 PF01122 Cobalamin_bind: Eukar 87.5 2.5 5.5E-05 41.6 8.1 67 25-100 210-278 (326)
65 KOG1366 Alpha-macroglobulin [P 81.7 3.6 7.8E-05 48.0 7.1 76 26-102 967-1046(1436)
66 TIGR01577 oligosac_amyl oligos 78.4 11 0.00025 40.0 9.3 91 30-122 314-426 (616)
67 TIGR01577 oligosac_amyl oligos 76.7 17 0.00037 38.7 10.0 112 27-146 253-394 (616)
68 PLN02592 ent-copalyl diphospha 76.3 10 0.00023 41.7 8.3 92 33-127 285-378 (800)
69 TIGR01535 glucan_glucosid gluc 76.0 15 0.00033 39.5 9.4 91 30-122 314-415 (648)
70 PF07470 Glyco_hydro_88: Glyco 72.8 7.4 0.00016 37.8 5.7 119 26-144 144-287 (336)
71 PF07470 Glyco_hydro_88: Glyco 63.9 18 0.00039 35.1 6.3 74 25-98 210-294 (336)
72 PF05382 Amidase_5: Bacterioph 59.6 28 0.00061 30.4 6.0 46 82-128 2-48 (145)
73 COG2373 Large extracellular al 57.0 23 0.00049 42.2 6.4 61 79-142 1198-1262(1621)
74 COG2373 Large extracellular al 55.8 75 0.0016 38.0 10.3 98 22-124 1191-1294(1621)
75 KOG1366 Alpha-macroglobulin [P 54.6 37 0.00079 40.0 7.5 95 51-148 936-1040(1436)
76 TIGR01535 glucan_glucosid gluc 53.7 83 0.0018 34.1 9.6 110 27-145 248-386 (648)
77 KOG3760 Heparan sulfate-glucur 53.3 11 0.00024 38.1 2.8 22 82-103 382-403 (594)
78 PLN02279 ent-kaur-16-ene synth 51.3 63 0.0014 35.8 8.4 88 33-127 245-333 (784)
79 cd04794 euk_LANCL eukaryotic L 45.4 76 0.0016 30.8 7.3 44 26-69 184-235 (343)
80 PF07221 GlcNAc_2-epim: N-acyl 44.3 69 0.0015 31.1 6.8 110 25-142 38-169 (346)
81 PF07944 DUF1680: Putative gly 35.0 1.5E+02 0.0033 30.9 8.0 26 26-51 79-104 (520)
82 COG4225 Predicted unsaturated 33.0 1.9E+02 0.004 29.0 7.6 74 24-98 226-309 (357)
83 PF09282 Mago-bind: Mago bindi 32.5 5.2 0.00011 24.9 -2.0 13 88-100 4-16 (27)
84 COG3538 Uncharacterized conser 32.0 3E+02 0.0064 27.9 8.8 132 26-162 260-412 (434)
85 PRK13621 psbV cytochrome c-550 31.2 1.1E+02 0.0024 27.5 5.2 58 28-100 105-162 (170)
86 PF10022 DUF2264: Uncharacteri 29.5 3.2E+02 0.0068 27.4 8.8 112 19-143 69-186 (361)
87 COG3533 Uncharacterized protei 27.4 3.6E+02 0.0077 28.6 8.8 109 26-146 85-212 (589)
88 COG4225 Predicted unsaturated 27.2 1.7E+02 0.0037 29.2 6.3 119 25-144 154-303 (357)
89 PRK13622 psbV cytochrome c-550 26.5 70 0.0015 29.0 3.2 36 76-111 142-178 (180)
90 PF05592 Bac_rhamnosid: Bacter 26.1 1E+02 0.0022 31.7 4.8 93 29-122 168-287 (509)
91 TIGR03046 PS_II_psbV2 photosys 23.8 66 0.0014 28.4 2.5 25 76-100 127-151 (155)
92 PF07944 DUF1680: Putative gly 23.5 1.6E+02 0.0036 30.6 5.8 60 79-141 82-157 (520)
93 PF09954 DUF2188: Uncharacteri 23.3 85 0.0018 22.8 2.7 40 94-147 6-45 (62)
94 COG3387 SGA1 Glucoamylase and 21.9 9.4E+02 0.02 25.9 11.2 203 112-340 290-517 (612)
No 1
>PLN03012 Camelliol C synthase
Probab=100.00 E-value=9.4e-98 Score=779.55 Aligned_cols=343 Identities=70% Similarity=1.329 Sum_probs=332.2
Q ss_pred CcccccccCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccccHHHHHHHHHhcCCCCCCCHH
Q 044313 1 ILREKKFKQTIPQVKIGDRGEEITPEIATTALRRAVNIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTE 80 (344)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~~a~~v~~l~~lg~~~~~~~~~ 80 (344)
+.||+++++.+|+||+++ +++||.+.+.+|++||++|++++|.+||||++|++|++|++|++|+++|++|..|++++++
T Consensus 69 ~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~a~~ra~~~~~~lQ~~dGhW~~e~~g~~fl~~~~Vi~~yi~g~~~~~~~~~ 147 (759)
T PLN03012 69 FLKEKKFEQRIAPAKVED-AEKITFEIATNALRKGIHFFSALQASDGHWPAENAGPLFFLPPLVFCLYITGHLDEIFTQD 147 (759)
T ss_pred HHhccCcccCCCcccCCC-CcccchHHHHHHHHHHHHHHHHhccCCCCcccccCCccchhHHHHHHHHHhcCCCCCCCHH
Confidence 368999999999999987 7889999999999999999999999999999999999999999999999999988888999
Q ss_pred HHHHHHHHHHhhccCCCCcccccCCCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 044313 81 HRKEMLRYICNHQNEDGGWGLHVEGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGATGIPSWGKTWLSI 160 (344)
Q Consensus 81 ~~~~~~~~L~~~Q~~DGGWg~~~~g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG~~~~~~~tk~~LAl 160 (344)
.++++++||+++||+|||||+|++|+|+||+|++||+|||++|+++|+..||+|+|||+||+++||++++|+|||||||+
T Consensus 148 ~~~ei~ryl~~~Qn~DGGWglh~eg~s~~~~Tv~~YvaLRllG~~~d~~~~~~m~rAR~~Il~~GGa~~~p~w~K~wLA~ 227 (759)
T PLN03012 148 HRKEILRYIYCHQKEDGGWGLHIEGHSTMFCTTLNYICMRILGEGPDGGHDNACGRARDWILDHGGATYIPSWGKTWLSI 227 (759)
T ss_pred HHHHHHHHHHHhccCCCCeecccCCCCcchhHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHHcCCcccCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999532379999999999999999999999999999
Q ss_pred hCCcCCCCCCCCCCccccCCCCCCCCcCCcchhcchhhhhhhhhhcCcccccCCchhhhhhhhhccCCCCCCchhhhccc
Q 044313 161 LGVYDWSGCNPMPPEFWKLPHFLPISPGKLLCYCRLTYMPMSYFYGKRFVGPITPLVLQLREEIYIQPYDEINWSKLRHL 240 (344)
Q Consensus 161 ~G~~~W~~~~~lP~El~llP~~~P~~~~~~~~~~R~~~vPm~il~~~r~~~~~~~~~~~l~~EL~~~p~~~~~w~~~r~~ 240 (344)
+|+|+|+++|+|||||||||+|||||||+||||+|+|||||+|||++||++|++|++.+||+|||++||++|+|.++|++
T Consensus 228 lG~y~W~g~np~PpElwLLP~~~P~hp~~~~~~~R~vy~Pmsyly~~R~~~~~~~~i~~lr~ELy~~py~~i~w~~~r~~ 307 (759)
T PLN03012 228 LGVFDWSGSNPMPPEFWILPSFFPIHPAKMWCYCRLVYLPMSYLYGKRFVGPISPLILQLREEIYLQPYAEINWMKARHL 307 (759)
T ss_pred cCccccCCCCCCChhHHHccCcCCccHHHHHHHHHHHHHHHHHHhcCCccccCCchhhhhHHHhCCCCccccChhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCchhhHHHHHHHHHHhhhhcccCCCCh-HHHHHHHHHHHhHHHhhhcCCccccccccccccccccccccCCC
Q 044313 241 CAKEDLFFPHTTVQNLLWDALHNQVEPVLNRWPLN-KLREKSLEAAMTHIHYEDEASRYMTIGCVEKPLNMLSCWAEDPN 319 (344)
Q Consensus 241 ~~~~d~~~p~~~~~~~~~~~l~~~~e~~~~~~~~~-~lR~~Al~~~~~~i~~~~~~t~~~~i~~v~~~l~~l~~~~~~p~ 319 (344)
||++|+|+|++++++++|..++.++|+++..++++ +||++|+++|++||++|+++|.|++|+||+++||||+||+++|+
T Consensus 308 ~a~~D~y~p~~~~~~~~~~~l~~~~~~~l~~~~~~~~LR~~Al~~a~~~I~~ed~~t~y~~i~pv~~~l~ml~~~~~~p~ 387 (759)
T PLN03012 308 CAKEDAYCPHPLIQDLIWDCLYIFAEPFLACWPFNKLLREKALGLAMKHIHYEDENSRYITIGCVEKALCMLACWVEDPN 387 (759)
T ss_pred cccccccCCchHHHhhhHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhcCCCCCEeeHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999888754 69999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhhccceEecCCccccC
Q 044313 320 GDYFKKHLARIGEYFWMGEDGMRVQ 344 (344)
Q Consensus 320 ~~~~~~~~~~l~~~l~~~~~G~~~q 344 (344)
||.||+|++||+||+|+++|||+||
T Consensus 388 ~~~~k~hl~ri~d~lw~~~dGm~~q 412 (759)
T PLN03012 388 GDHFKKHLLRISDYLWIAEDGMKMQ 412 (759)
T ss_pred CHHHHHHHHHhhhcEEEeCCceEEc
Confidence 9999999999999999999999998
No 2
>PLN02993 lupeol synthase
Probab=100.00 E-value=7.9e-97 Score=773.90 Aligned_cols=343 Identities=69% Similarity=1.303 Sum_probs=331.5
Q ss_pred CcccccccCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccccHHHHHHHHHhcCCCCCCCHH
Q 044313 1 ILREKKFKQTIPQVKIGDRGEEITPEIATTALRRAVNIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTE 80 (344)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~~a~~v~~l~~lg~~~~~~~~~ 80 (344)
+.||+++++.+|+||+++ +++||.+.+.+|++||++||+++|.+||||++|++|++|++|++|+++|++|..|+.++++
T Consensus 69 ~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~a~~ra~~~l~~lQ~~DGhW~~e~~g~~fl~~~~Vi~~~~~g~~~~~~~~~ 147 (763)
T PLN02993 69 FLKEAKFEQVIPPVKIDR-GEEITYETATNALRRGVSFFSALQASDGHWPGEITGPLFFLPPLVFCLYITGHLEEVFDAE 147 (763)
T ss_pred HHhccCcccCCCcccCCC-CccccHHHHHHHHHHHHHHHHHhccCCCCcccccCCcchhhHHHHHHHHHhcCCCCCCCHH
Confidence 368999999999999987 7889999999999999999999999999999999999999999999999999877788899
Q ss_pred HHHHHHHHHHhhccCCCCcccccCCCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 044313 81 HRKEMLRYICNHQNEDGGWGLHVEGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGATGIPSWGKTWLSI 160 (344)
Q Consensus 81 ~~~~~~~~L~~~Q~~DGGWg~~~~g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG~~~~~~~tk~~LAl 160 (344)
.++++++||+++||+|||||+|++|+|+||+|++||+|||++|+++|++.+|+|+|||+||+++||++++|+|||||||+
T Consensus 148 ~~~ei~ryl~~~Q~~DGGWgl~~eg~s~~~~Tv~~Y~aLRllG~~~d~~~~p~m~rAR~~Il~~GGa~~~~~wtK~wLAl 227 (763)
T PLN02993 148 HRKEMLRHIYCHQNEDGGWGLHIESKSVMFCTVLNYICLRMLGEGPNGGRENACKRARQWILDHGGVTYIPSWGKFWLSI 227 (763)
T ss_pred HHHHHHHHHHHhccCCCCcccccCCCccchHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHcCCcccCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999221299999999999999999999999999999
Q ss_pred hCCcCCCCCCCCCCccccCCCCCCCCcCCcchhcchhhhhhhhhhcCcccccCCchhhhhhhhhccCCCCCCchhhhccc
Q 044313 161 LGVYDWSGCNPMPPEFWKLPHFLPISPGKLLCYCRLTYMPMSYFYGKRFVGPITPLVLQLREEIYIQPYDEINWSKLRHL 240 (344)
Q Consensus 161 ~G~~~W~~~~~lP~El~llP~~~P~~~~~~~~~~R~~~vPm~il~~~r~~~~~~~~~~~l~~EL~~~p~~~~~w~~~r~~ 240 (344)
+|+|||+++|+|||||||||+|||||||+||||+|+|||||+|||++||++|++|++.+||+|||++||++|+|.++|+.
T Consensus 228 lG~y~W~g~~p~PpElwLLP~~~P~hp~~~~~~~R~v~vPmsyl~~~r~~~~~~~~i~~lr~ELy~~py~~i~~~~~r~~ 307 (763)
T PLN02993 228 LGIYDWSGTNPMPPEIWLLPSFLPIHLGKTLCYTRMVYMPMSYLYGKRFVGPITPLIMLLREELHLQPYEEINWNKARRL 307 (763)
T ss_pred cCCcccCCCCCCChhHHHccCcCCccHHHhHHhhhhhHHhHHHHhcCCcccCCCchhhhhhHHhccCCchhcChHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCchhhHHHHHHHHHHhhhhcccCCCCh-HHHHHHHHHHHhHHHhhhcCCccccccccccccccccccccCCC
Q 044313 241 CAKEDLFFPHTTVQNLLWDALHNQVEPVLNRWPLN-KLREKSLEAAMTHIHYEDEASRYMTIGCVEKPLNMLSCWAEDPN 319 (344)
Q Consensus 241 ~~~~d~~~p~~~~~~~~~~~l~~~~e~~~~~~~~~-~lR~~Al~~~~~~i~~~~~~t~~~~i~~v~~~l~~l~~~~~~p~ 319 (344)
|+++|+|+|++++++++++.+.+++++++..+|++ +||++|+++|++||++++++|+|++|+|||+++|||+||.++|+
T Consensus 308 ~~~~d~y~p~~~~~~~~~~~l~~~~~~~l~~~p~~~~lR~~Al~~a~~~i~~ed~~t~y~~i~~vn~~l~ml~~~~~~p~ 387 (763)
T PLN02993 308 CAKEDMYYPHPLVQDLIWDTLHNFVEPFLTRWPLNKLVREKALQVAMKHIHYEDENSHYITIGCVEKVLCMLACWIENPN 387 (763)
T ss_pred ccccCCCCCchHHHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999888877 78999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhhccceEecCCccccC
Q 044313 320 GDYFKKHLARIGEYFWMGEDGMRVQ 344 (344)
Q Consensus 320 ~~~~~~~~~~l~~~l~~~~~G~~~q 344 (344)
||.|++|++||+||+|+++|||+||
T Consensus 388 ~~~~~~~l~ri~d~lw~~edgm~~q 412 (763)
T PLN02993 388 GDHFKKHLARIPDYMWVAEDGMKMQ 412 (763)
T ss_pred CHHHHHHHHHhhhcEEEeCCceEEc
Confidence 9999999999999999999999998
No 3
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=6.7e-87 Score=675.60 Aligned_cols=342 Identities=71% Similarity=1.304 Sum_probs=331.6
Q ss_pred cccccccCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccccHHHHHHHHHhcCCCCCCCHHH
Q 044313 2 LREKKFKQTIPQVKIGDRGEEITPEIATTALRRAVNIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEH 81 (344)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~~a~~v~~l~~lg~~~~~~~~~~ 81 (344)
.+|+.+++.+|++|++| +++++.+...+++++++.|+..+|.+||||+++++||+|+.+.+|+.++++|..+..++.++
T Consensus 70 ~~E~~~~q~~p~v~~~d-~e~i~~e~~~~~lrrgi~f~~~LQa~DGhwp~~~~GPlf~~~~~v~~~yitg~l~~~~~~eh 148 (760)
T KOG0497|consen 70 LREKKFEQVIPRVKIED-AEEITYEDATTALRRGLLFFSALQAPDGHWPGEYSGPLFFLPPLVICLYITGHLEKIFTAEH 148 (760)
T ss_pred hhhhhhhhcCCCccccc-cceeehhhhhhhhhhhHHHHHHhcCCCCCCCCCCCCChhhhhhhhheeeecccCCcccCccc
Confidence 46788999999999998 78899999999999999999999999999999999999999999999999998888899999
Q ss_pred HHHHHHHHHhhccCCCCcccccCCCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHh
Q 044313 82 RKEMLRYICNHQNEDGGWGLHVEGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGATGIPSWGKTWLSIL 161 (344)
Q Consensus 82 ~~~~~~~L~~~Q~~DGGWg~~~~g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG~~~~~~~tk~~LAl~ 161 (344)
+.++++||.++||+|||||+|.+++|++++|+.+|+.||++|+.++++...+|+|||.||+++||+..+|+|+|+||+++
T Consensus 149 r~Eliry~ynhqn~DGGWGlhve~~S~mF~TvlNYi~LRilG~~~~~~~~~a~~~aR~wild~GGa~~~p~wgK~wLsvL 228 (760)
T KOG0497|consen 149 RKEILRYIYNHQNEDGGWGLHVEGKSTMFCTVLNYICLRILGEGPDHGDESACKRARKWILDHGGATYIPSWGKFWLSVL 228 (760)
T ss_pred HHHHHHHHHhccCCCCCccccccCceeEEEeeehheeheeeccCCCCCchhHHHHHHHHHHHcCCccccchhhHHHHHhc
Confidence 99999999999999999999999999999999999999999999998322389999999999999999999999999999
Q ss_pred CCcCCCCCCCCCCccccCCCCCCCCcCCcchhcchhhhhhhhhhcCcccccCCchhhhhhhhhccCCCCCCchhhhcccc
Q 044313 162 GVYDWSGCNPMPPEFWKLPHFLPISPGKLLCYCRLTYMPMSYFYGKRFVGPITPLVLQLREEIYIQPYDEINWSKLRHLC 241 (344)
Q Consensus 162 G~~~W~~~~~lP~El~llP~~~P~~~~~~~~~~R~~~vPm~il~~~r~~~~~~~~~~~l~~EL~~~p~~~~~w~~~r~~~ 241 (344)
|+|+|+|++++|||+||||.|+|+|++++|||+|.||+||+|+|++||+++.+|++..||+|||++||++|+|.++||.|
T Consensus 229 gvydWsG~np~pPElwllP~~~P~h~g~~w~~~R~vy~pmsYlygkrfv~~~tpli~~LreELy~~py~~Inw~~~Rn~~ 308 (760)
T KOG0497|consen 229 GVYDWSGVNPLPPELWLLPSFLPIHPGTLWCHCRDVYMPMSYLYGKRFVAPPTPLILQLREELYPEPYDKINWSKARNLC 308 (760)
T ss_pred ccccCcCCCCCCchhhccccccCCCCCceEEEecceecccccceeeeeeccCChHHHHHhhhhcCCChhhhhHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCchhhHHHHHHHHHHhhhhcccCCCChHHHHHHHHHHHhHHHhhhcCCccccccccccccccccccccCCCcH
Q 044313 242 AKEDLFFPHTTVQNLLWDALHNQVEPVLNRWPLNKLREKSLEAAMTHIHYEDEASRYMTIGCVEKPLNMLSCWAEDPNGD 321 (344)
Q Consensus 242 ~~~d~~~p~~~~~~~~~~~l~~~~e~~~~~~~~~~lR~~Al~~~~~~i~~~~~~t~~~~i~~v~~~l~~l~~~~~~p~~~ 321 (344)
+++|+|+|||.+++++|+.|.++.++++++||.+-+|++|++.++|+|+++|++|+|+|||||+|++|||+||+|+|++.
T Consensus 309 akeDlyyphs~i~D~l~~~l~~~~e~ll~rWp~~~~R~~a~~~~me~ihyede~t~yi~ig~v~k~~~ml~cwvedp~s~ 388 (760)
T KOG0497|consen 309 AKEDLYYPHSLLQDLLWALLHKFSEPLLNRWPLKLIREKALRTAMELIHYEDENTRYITIGPVNKAFNMLACWVEDPNSD 388 (760)
T ss_pred ccccccCCcHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhcccCceecccchhhhcceeeeeeccchH
Confidence 99999999999999999999999999999999855599999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccceEecCCccccC
Q 044313 322 YFKKHLARIGEYFWMGEDGMRVQ 344 (344)
Q Consensus 322 ~~~~~~~~l~~~l~~~~~G~~~q 344 (344)
+|++|+.|++||+|+++|||+||
T Consensus 389 ~Fkkhl~Ri~d~lw~gedGmkmq 411 (760)
T KOG0497|consen 389 AFKKHLARIPDFLWIAEDGMKMQ 411 (760)
T ss_pred HHHHHhccccCeEEEcCCCceEe
Confidence 99999999999999999999998
No 4
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=100.00 E-value=2e-80 Score=647.39 Aligned_cols=297 Identities=35% Similarity=0.685 Sum_probs=281.5
Q ss_pred HHHHHhcCCCCCcccCCCCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCccccchHHHH
Q 044313 37 NIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTMFGTVFNY 116 (344)
Q Consensus 37 ~~L~~~Q~~DG~W~g~~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~g~s~i~~T~~ay 116 (344)
.+|+++|.+||||++|+++++|+++++|+++|++|. +.+++.++++++||+++||+|||||+|++++|+||+|++||
T Consensus 2 ~~l~~~Q~~dG~W~~e~~~~~~~~a~~i~~~~~~~~---~~~~~~~~~~~~yl~~~Q~~dGgWgl~~~~~~~~~~T~~~Y 78 (634)
T TIGR03463 2 ARLTETQQPAGCWEGEMIWCPVVTAQVAITRHVVGR---PPEPEQRAGIIRHFENSQLADGAWGLHPEAPGQVFTTVLNY 78 (634)
T ss_pred hhHHhcccCCCccccccCCccccCHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhccCCCCccCCCCCCcchHHHHHHH
Confidence 589999999999999999999999999999999996 34567899999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCCchHHHHHHHHHHHc-CCCCCcchHHHHHHHHhCCcCCCCCCCCCCccccCCCCCCCCcCCcchhcc
Q 044313 117 ICMRLLGEGPDGGENSGCTRARKWILDR-GGATGIPSWGKTWLSILGVYDWSGCNPMPPEFWKLPHFLPISPGKLLCYCR 195 (344)
Q Consensus 117 ~AL~l~G~~~~~~~~p~m~rAr~~Il~~-GG~~~~~~~tk~~LAl~G~~~W~~~~~lP~El~llP~~~P~~~~~~~~~~R 195 (344)
+|||++|+++++ |+|+|||+||+++ ||++++|+|||+|||++|+|||+++|+|||||||||+|||||||+||||+|
T Consensus 79 ~aLrl~G~~~~~---~~~~rAr~~i~~~~GG~~~~~~~~k~~La~~g~~~W~~~~~~P~El~lLP~~~P~~~~~~~~~~R 155 (634)
T TIGR03463 79 VALRLLGVGKED---AGLARARQWLHAQPGGVLGSPTWGKFWLALLGLYGRGGLQPVPPELWLLPESLPFHPSRFYCHTR 155 (634)
T ss_pred HHHHHcCCCCCC---HHHHHHHHHHHhCCCCcccCchHHHHHHHHcCcCCcccCCCCCHHHHHccccCCcCHHHHHHHhH
Confidence 999999999998 9999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhcCcccccCCchhhhhhhhhccCCCCCCchhhhcccccccCCCCCchhhHHHHHHHHHHhhhhcccCCCCh
Q 044313 196 LTYMPMSYFYGKRFVGPITPLVLQLREEIYIQPYDEINWSKLRHLCAKEDLFFPHTTVQNLLWDALHNQVEPVLNRWPLN 275 (344)
Q Consensus 196 ~~~vPm~il~~~r~~~~~~~~~~~l~~EL~~~p~~~~~w~~~r~~~~~~d~~~p~~~~~~~~~~~l~~~~e~~~~~~~~~ 275 (344)
+||+||+||+++||+++++|++.+||+|||++||++|+|.+.|+.|+++|+|+|+++++++++..+ +.+++ ++++
T Consensus 156 ~v~~p~~~l~~~r~~~~~~~~~~~l~~EL~~~~~~~~~~~~~~~~~~~~d~~~p~~~~~~~~~~~l-~~~~~----~~~~ 230 (634)
T TIGR03463 156 MVYLPMSWLYGRRARAPLTPLRAALRQELYDGGYGQVDFVAARERVAPTDVFTPRTFWLRAANQVM-YGYER----LAGK 230 (634)
T ss_pred HHHHhHHHHhcCCcccCCCcchhhhhHHhccCCccccccccccCccccccccCCcHHHHHHHHHHH-HHhhc----cCCH
Confidence 999999999999999999999999999999999999999999999999999999998877775555 44544 3456
Q ss_pred HHHHHHHHHHHhHHHhhhcCCccccccccccccccccccccCCCcHHHHHHHHhhccceEecCC-ccccC
Q 044313 276 KLREKSLEAAMTHIHYEDEASRYMTIGCVEKPLNMLSCWAEDPNGDYFKKHLARIGEYFWMGED-GMRVQ 344 (344)
Q Consensus 276 ~lR~~Al~~~~~~i~~~~~~t~~~~i~~v~~~l~~l~~~~~~p~~~~~~~~~~~l~~~l~~~~~-G~~~q 344 (344)
+||++|+++|++||++++++|+|++|+||+++++||+++.++|+||.|+||+++|++|+|.++| ||+||
T Consensus 231 ~lr~~A~~~~~~~i~~~~~~~~~~~i~p~~~~~~~l~~~g~~~~~p~~~k~l~~l~~~~~~~~~~g~~~q 300 (634)
T TIGR03463 231 QLRARALDFCLEQIRAEDEATHYICISPVNGVLNMLAWFAVNPDGPEVAAHLEGLEDYRYEDDDRGLRYN 300 (634)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEehHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhEEEcCCCCEEEe
Confidence 7999999999999999999999999999999999999999999999999999999999999999 89987
No 5
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=100.00 E-value=1.4e-76 Score=620.14 Aligned_cols=299 Identities=49% Similarity=0.975 Sum_probs=279.5
Q ss_pred HHHHHHHHHHhcCCCCCcccCCCCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCccccc
Q 044313 32 LRRAVNIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTMFG 111 (344)
Q Consensus 32 i~ra~~~L~~~Q~~DG~W~g~~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~g~s~i~~ 111 (344)
+++|++||+++|.+||||++|+++++|++|++|+++|++|+ .++++.++++++||+++||+|||||+|++++|++++
T Consensus 1 ~~~~~~~l~~~q~~dG~W~~e~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~q~~dGgw~~~~~~~~~~~~ 77 (634)
T cd02892 1 IRRALEFLLSLQAPDGHWPGELEGPLFITAEYILLLYILGI---PIDPEHRKEIARYLRNHQNPDGGWGLHHEGPSTMFG 77 (634)
T ss_pred ChHHHHHHHHhccCCCceecccCCcchhhHHHHHHHHHhcC---CCCHHHHHHHHHHHHHhccCCCCccCCCCCCcchHH
Confidence 47899999999999999999999999999999999999996 345788999999999999999999999999999999
Q ss_pred hHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhCCcCCCCCCCCCCccccCCCCCCCCcCCcc
Q 044313 112 TVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGATGIPSWGKTWLSILGVYDWSGCNPMPPEFWKLPHFLPISPGKLL 191 (344)
Q Consensus 112 T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG~~~~~~~tk~~LAl~G~~~W~~~~~lP~El~llP~~~P~~~~~~~ 191 (344)
|++||+|||++|+++++ |+|+|||+||+++||++++|+|||||||++|+|||+++|+|||||||||+|||||||+||
T Consensus 78 T~~~Y~aLrl~G~~~~~---~~m~~Ar~~i~~~GG~~~~~~~~k~~La~~G~~~W~~~~~~P~El~llP~~~p~~~~~~~ 154 (634)
T cd02892 78 TVLNYVALRLLGVSPDD---PHMVKARNWILSHGGAARIPVWGKIWLALLGVYPWEGVPPLPPELWLLPSWLPFHPYKFW 154 (634)
T ss_pred HHHHHHHHHHcCCCCCC---HHHHHHHHHHHHcCCcccccHHHHHHHHHcCccccccCCCCCHhHHhcCCcCCccHHHHH
Confidence 99999999999999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhhhhhhhhhcCcccccCCchhhhhhhhhccCCCCCCchhhhcccccccCCCCCchhhHHHHHHHHHHhhhhcccC
Q 044313 192 CYCRLTYMPMSYFYGKRFVGPITPLVLQLREEIYIQPYDEINWSKLRHLCAKEDLFFPHTTVQNLLWDALHNQVEPVLNR 271 (344)
Q Consensus 192 ~~~R~~~vPm~il~~~r~~~~~~~~~~~l~~EL~~~p~~~~~w~~~r~~~~~~d~~~p~~~~~~~~~~~l~~~~e~~~~~ 271 (344)
||+|+||+||+||+++||++|+++++..+++|||++||++++|..+|+ +++|++.|++.+...+...+ +.+++
T Consensus 155 ~~~R~~~~p~~~l~~~r~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~---- 227 (634)
T cd02892 155 CWARTVYVPMSYLYGKRPVAPITPLVLSLRDELYVEPYEKINWYKHRN--DLYDYRPPWQRLFDALDRLL-HWYEP---- 227 (634)
T ss_pred HHHHHHHHhHHHHhcCCcccCCCCccccchHHhCCCCccccccccccc--ccccCCCChHHHHHHHHHHH-HHHHh----
Confidence 999999999999999999999998888999999999999999999998 78888888877766664444 44444
Q ss_pred CCChHHHHHHHHHHHhHHHhhhcCCccccccccccccccccccccC-CCcHHHHHHHHhhccceEecCCcccc
Q 044313 272 WPLNKLREKSLEAAMTHIHYEDEASRYMTIGCVEKPLNMLSCWAED-PNGDYFKKHLARIGEYFWMGEDGMRV 343 (344)
Q Consensus 272 ~~~~~lR~~Al~~~~~~i~~~~~~t~~~~i~~v~~~l~~l~~~~~~-p~~~~~~~~~~~l~~~l~~~~~G~~~ 343 (344)
.+++++|++|++++++||+++++++++++.+|++++++|++++.++ |+||.+++|+++|++|+|..+||+.+
T Consensus 228 ~~~~~lr~~a~~~~~~~i~~~q~~~g~~~~~~~~~~l~~lal~~~g~~~~~~~~~~l~~l~~~~~~~~~g~~~ 300 (634)
T cd02892 228 LPPKPLRRKALRKAYEWILYRDENTGYLGIIPPPKANNMLALWVLGYPDSPAFKRHLERIDDFLWLGPEGMKM 300 (634)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhcCCCceeeeehHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcEEEecCCcEE
Confidence 3456799999999999999999999999999999999999999887 79999999999999999999888764
No 6
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=100.00 E-value=2.3e-72 Score=586.63 Aligned_cols=294 Identities=21% Similarity=0.337 Sum_probs=263.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccccC
Q 044313 25 PEIATTALRRAVNIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVE 104 (344)
Q Consensus 25 ~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~ 104 (344)
.+++.+|+++|.+||+++|.+||||++|+++++|+++++|+++|++|..+ ++.++++++||+++||+|||||+|++
T Consensus 11 ~~~~~~a~~~~~~~l~~~Q~~dG~W~~e~~~~~~~~a~~i~~~~~~g~~~----~~~~~~~~~~l~~~Q~~DGgWg~~~~ 86 (635)
T TIGR01507 11 TARTVEAIDRAVDYLLSCQKDEGYWWGELESNVTIEAEYVLLCHILDRVD----RDRMEKIRNYLLHEQREDGTWALYPG 86 (635)
T ss_pred cHHHHHHHHHHHHHHHHhccCCCccccccCCcchhcHHHHHHHHHHCCCc----HHHHHHHHHHHHHhccCCCCccCccC
Confidence 44689999999999999999999999999999999999999999999743 67899999999999999999999999
Q ss_pred CCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhCCcCCCCCCCCCCccccCCCCCC
Q 044313 105 GHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGATGIPSWGKTWLSILGVYDWSGCNPMPPEFWKLPHFLP 184 (344)
Q Consensus 105 g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG~~~~~~~tk~~LAl~G~~~W~~~~~lP~El~llP~~~P 184 (344)
++|++++|++||+|||++|+++++ |+|+|||+||+++||++++|+|||||||++|+|||+++|+|||||||||+|||
T Consensus 87 ~~~~~~~Tv~~Y~aLrl~G~~~~~---~~m~rAr~~I~~~GG~~~~~~~tk~~LAl~G~~~W~~~~~~P~El~llP~~~p 163 (635)
T TIGR01507 87 GPGDLSTTVEAYVALKYIGMSRDE---PPMQKALRFIQSQGGIESSRVFTRMWLALVGEYPWRGVPMVPPEIMLLPKRFP 163 (635)
T ss_pred CCcchhHHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHcCCcccccHHHHHHHHHcCCcCcccCCCCCHHHHhCCCcCC
Confidence 999999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCcchhcchhhhhhhhhhcCcccccCCchhhhhh-hhhccCCCCCCchhhhcccccccCCCCCchh-hHHHHHHHHH
Q 044313 185 ISPGKLLCYCRLTYMPMSYFYGKRFVGPITPLVLQLR-EEIYIQPYDEINWSKLRHLCAKEDLFFPHTT-VQNLLWDALH 262 (344)
Q Consensus 185 ~~~~~~~~~~R~~~vPm~il~~~r~~~~~~~~~~~l~-~EL~~~p~~~~~w~~~r~~~~~~d~~~p~~~-~~~~~~~~l~ 262 (344)
||||+||||+|+|+|||+||+++||+++++. ++| +|||.+|+++ .|+.+++.| +++ +...+. .+.
T Consensus 164 ~~~~~~~~~~R~~~~P~~~l~~~r~~~~~~~---~~~~~eL~~~~~~~-----~~~~~~~~~----~~~~~~~~~~-~~l 230 (635)
T TIGR01507 164 FNIYEFSSWARATVVPLSIVCSRKPVFPLPE---RARVPELYETDVPK-----PRRRGAKGG----TGWGIFDALD-RAL 230 (635)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCccCCCc---ccChHhhcCCChHH-----hcccCCccC----CcHHHHHHHH-HHH
Confidence 9999999999999999999999999988763 455 9999998844 455565554 344 444443 333
Q ss_pred HhhhhcccCCCChHHHHHHHHHHHhHHHhhhcCCc-ccccccccccccccccc-ccC--CCcHHHHHHHHhhccceEecC
Q 044313 263 NQVEPVLNRWPLNKLREKSLEAAMTHIHYEDEASR-YMTIGCVEKPLNMLSCW-AED--PNGDYFKKHLARIGEYFWMGE 338 (344)
Q Consensus 263 ~~~e~~~~~~~~~~lR~~Al~~~~~~i~~~~~~t~-~~~i~~v~~~l~~l~~~-~~~--p~~~~~~~~~~~l~~~l~~~~ 338 (344)
+.++++ +++++|++|+++|++||++++++++ |.+|+| +++|||+++ +++ ++||.++||+++|++|+|.++
T Consensus 231 ~~~~~l----~~~~lr~~A~~~a~~~i~~~~e~~g~~~~i~p--~~~~~l~~l~~~g~~~~~~~~~~~l~~l~~~~~~~~ 304 (635)
T TIGR01507 231 HGYEKL----SVHPFRRAAEIRALDWLLERQAGDGSWGGIQP--AMFNALIALKILGMTQHDAFIKLGWEGIDLYGVELD 304 (635)
T ss_pred HHHHhc----CCcHHHHHHHHHHHHHHHHHHcCCCceeecch--HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHheEecC
Confidence 445542 3455999999999999999999999 999998 889999998 555 899999999999999999999
Q ss_pred CccccC
Q 044313 339 DGMRVQ 344 (344)
Q Consensus 339 ~G~~~q 344 (344)
||+++|
T Consensus 305 ~g~~~~ 310 (635)
T TIGR01507 305 DSWMFQ 310 (635)
T ss_pred CceEec
Confidence 999886
No 7
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=100.00 E-value=1.8e-71 Score=579.17 Aligned_cols=289 Identities=44% Similarity=0.847 Sum_probs=257.5
Q ss_pred HHHHHHHHHHHhcCCCCCcccCCCCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCcccc
Q 044313 31 ALRRAVNIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTMF 110 (344)
Q Consensus 31 ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~g~s~i~ 110 (344)
|+++|.+||+++|.+||||+||+++++|+++++|+++|++|+.+ ++.++++++||+++||+|||||+|++++|+|+
T Consensus 1 ~~~~~~~~l~~~Q~~dG~W~~~~~~~~~~~a~~i~~~~~~g~~~----~~~~~~~~~~l~~~Q~~DGgW~~~~~~~~~~~ 76 (621)
T TIGR01787 1 TARRAVEFLLSLQAPDGYWWGELEGPLTLLAEYVLLCHIADTPL----PGYREKIVRYLRHHQNEDGGWGLHIGGKSTVF 76 (621)
T ss_pred CHHHHHHHHHHhccCCCceecccCCccccCHHHHHHHHHhcCCC----hHHHHHHHHHHHHhcCCCCCeeCCcCCCcchH
Confidence 47899999999999999999999999999999999999999743 47899999999999999999999999999999
Q ss_pred chHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhCCcCCCCCCCCCCccccCCCCCCCCcCCc
Q 044313 111 GTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGATGIPSWGKTWLSILGVYDWSGCNPMPPEFWKLPHFLPISPGKL 190 (344)
Q Consensus 111 ~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG~~~~~~~tk~~LAl~G~~~W~~~~~lP~El~llP~~~P~~~~~~ 190 (344)
+|++||+|||++|+++++ |+|+|||+||+++||++++|+|||||||++|+|||+++|+||+||||||+|||||++++
T Consensus 77 ~Tv~aY~aLrl~G~~~~~---~~m~~Ar~~i~~~GG~~~~~~~~k~~La~~G~~~W~~~~~~P~El~llP~~~p~~~~~~ 153 (621)
T TIGR01787 77 GTVLAYVALKILGMSPDD---PAMVRARNFILKQGGAVASPVFTKFWLALLGVYPWEGVPPLPPEIMLLPKWLPIHPSKS 153 (621)
T ss_pred HHHHHHHHHHHcCCCCCc---HHHHHHHHHHHHcCCcccCchHHHHHHHHcCccccccCCCCCHhHHhcCcccCcCcchh
Confidence 999999999999999998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred chhcchhhhhhhhhhcCcccccCCchhhhhhhhhccCCCCCCchhhhcccccccCCCCCchhhHHHHHHHHHHhhhhccc
Q 044313 191 LCYCRLTYMPMSYFYGKRFVGPITPLVLQLREEIYIQPYDEINWSKLRHLCAKEDLFFPHTTVQNLLWDALHNQVEPVLN 270 (344)
Q Consensus 191 ~~~~R~~~vPm~il~~~r~~~~~~~~~~~l~~EL~~~p~~~~~w~~~r~~~~~~d~~~p~~~~~~~~~~~l~~~~e~~~~ 270 (344)
|||+|+|++||+|++++|++.|.++ |+|||++| +++ .+.|+.++++|+|+|++++.+.++..+..+.++++
T Consensus 154 w~~~~~v~l~~~~~~~~~~~~~~~~-----~~el~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 224 (621)
T TIGR01787 154 WCRCRMVYLPMSYCYGERLSAPIDP-----REELYVED-DSI--RAQRNNVAKEDLYTPHSWLLRALYGLLNLFYHPFL- 224 (621)
T ss_pred hhhhhhHHHHHHHHcCccccCCCCc-----chhhcCCC-cch--hhccCCCCcccccccHHHHHHHHHHHHhhcccccc-
Confidence 9999999999999999999988776 69999999 776 46788899999999998887666443322211111
Q ss_pred CCCChHHHHHHHHHHHhHHHhhhcCCccccccccccccccccccccC-CCcHHHHHHHHhhccceEecCCccccC
Q 044313 271 RWPLNKLREKSLEAAMTHIHYEDEASRYMTIGCVEKPLNMLSCWAED-PNGDYFKKHLARIGEYFWMGEDGMRVQ 344 (344)
Q Consensus 271 ~~~~~~lR~~Al~~~~~~i~~~~~~t~~~~i~~v~~~l~~l~~~~~~-p~~~~~~~~~~~l~~~l~~~~~G~~~q 344 (344)
.+.+|++|++++++||++ ++ |+++|+++++|+++++++ |+||.|++|+++|++|+|+++|||+||
T Consensus 225 ---~~~a~~~a~~~~~~~~~~----~g--~~~~i~~~~~~~al~~~g~~d~p~~~~~l~~l~~~~~~~~dg~~~q 290 (621)
T TIGR01787 225 ---RKALRKRALQWLYEHIAA----DG--SIGPISKAMAMLALWFLDGPNSPAFQKHLQRIDDYLWLQLDGMKMQ 290 (621)
T ss_pred ---cHHHHHHHHHHHHHHhcc----CC--CchhHhHHHHHHHHHHcCCCCCHHHHHHHHHHhhcEEEeCCccEEe
Confidence 122455666666666555 44 899999999999999886 899999999999999999999999997
No 8
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=99.75 E-value=6.4e-19 Score=178.38 Aligned_cols=189 Identities=22% Similarity=0.305 Sum_probs=139.9
Q ss_pred HHHcCCCCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhCCcCCCCCCCCCCccccCCCCCCCCcCCcchhcchhh
Q 044313 119 MRLLGEGPDGGENSGCTRARKWILDRGGATGIPSWGKTWLSILGVYDWSGCNPMPPEFWKLPHFLPISPGKLLCYCRLTY 198 (344)
Q Consensus 119 L~l~G~~~~~~~~p~m~rAr~~Il~~GG~~~~~~~tk~~LAl~G~~~W~~~~~lP~El~llP~~~P~~~~~~~~~~R~~~ 198 (344)
|+.+|++.++ |+|.+|+++|+.+||+.+.++|||++||++|.|+|. ++++|++.|+||.-+|+|+|++|||+|.++
T Consensus 1 ~~~~g~~~~~---p~~~~a~~~~~~~gg~~~~~~~~k~~la~~~~y~w~-~~~~p~~~~~lp~~~p~~~~~~~~~~r~~~ 76 (517)
T COG1657 1 LRPLGVPATD---PALLKARSFILWRGGISKSRIWTKCRLAVLGAYIWR-APSAPPWVMLLPNTLPVHFYQMSSWARSST 76 (517)
T ss_pred CCcccCCccc---HHHhccHhhhhhcCCccccchHHHHHHHHhcceeec-cCCCCchHhhCCCcccchHHHHHHHhhhcc
Confidence 4678888887 999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred hhhhhhhcCcccccCCchhhhhhhhhccCCCCCCchhhhcccccccCCCCCchhhHHHHHHHHHHhhhhcccCCCChHHH
Q 044313 199 MPMSYFYGKRFVGPITPLVLQLREEIYIQPYDEINWSKLRHLCAKEDLFFPHTTVQNLLWDALHNQVEPVLNRWPLNKLR 278 (344)
Q Consensus 199 vPm~il~~~r~~~~~~~~~~~l~~EL~~~p~~~~~w~~~r~~~~~~d~~~p~~~~~~~~~~~l~~~~e~~~~~~~~~~lR 278 (344)
+| + +.+ +.+++|..+ +...++++|++.....++..+.+..+.. ...+..+++
T Consensus 77 ~p---~--------~~~----~~~~~~~~~------------~~~~~l~yp~~~~~~r~~~~~~~~~~~~-~~~~~~~~~ 128 (517)
T COG1657 77 VP---L--------IAP----ASDPLLTEG------------VKNVLLLYPTSGDVERLLLLLDHYFKRG-FPAPVTSLR 128 (517)
T ss_pred cc---c--------ccc----ccccccccc------------ccceeEEcCCcchHHHHHHHHHHHHhhc-cCccchhhh
Confidence 99 1 111 224455433 2234677888654433333333322222 233456666
Q ss_pred HHHHHHHHhHHHhhhcCCccccccccccccccccccc-cCCCc-HHHHHHHHhhccceEecCCccc
Q 044313 279 EKSLEAAMTHIHYEDEASRYMTIGCVEKPLNMLSCWA-EDPNG-DYFKKHLARIGEYFWMGEDGMR 342 (344)
Q Consensus 279 ~~Al~~~~~~i~~~~~~t~~~~i~~v~~~l~~l~~~~-~~p~~-~~~~~~~~~l~~~l~~~~~G~~ 342 (344)
.+ +.+.-|+..+++ ++.-+.++||.++++....+ .+.++ ..|+++..+-.++.+....|+-
T Consensus 129 ~~--~~a~l~~~e~Qn-~dg~w~g~v~aa~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (517)
T COG1657 129 VR--KEAELWKLERQN-DDGSWRGIVNAASNVVLSLVVLGLDSNEPFQRRELRAEDSELVKAVGRG 191 (517)
T ss_pred hh--hhhheeeeeecc-cccccccchhhhhHHHHHHHHhhhccchHhhhhhhhhhhhhhhcccccc
Confidence 66 445555555553 33357999999888888875 46666 8899999988888777655543
No 9
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.73 E-value=9.2e-19 Score=142.98 Aligned_cols=106 Identities=26% Similarity=0.507 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCCCCCcccCCCCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCccccc
Q 044313 32 LRRAVNIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTMFG 111 (344)
Q Consensus 32 i~ra~~~L~~~Q~~DG~W~g~~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~g~s~i~~ 111 (344)
|+++++||++.|++||+|.++++.+++.+...+.++..++.. ...+.++++++||+++|++||||+.. +.++.+.
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~~~~~~~~~t~~~~~al~~~~~~---~~~~ai~ka~~~l~~~Q~~dG~w~~~--~~~~~~~ 75 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGYNWGSDVFVTAALILALAAAGDA---AVDEAIKKAIDWLLSHQNPDGGWGYS--GGEYVSM 75 (109)
T ss_dssp ----------------------------------------TS----SSBSSHHHHHHHHH---TTS--S-T--S--HHHH
T ss_pred CccccccccccccccccccccccccccccccccccccccCCC---CcHHHHHHHHHHHHHhcCCCCCCCCc--CCCCHHH
Confidence 678999999999999999999888888888888888877642 22467999999999999999999855 5566778
Q ss_pred hHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcC
Q 044313 112 TVFNYICMRLLGEGPDGGENSGCTRARKWILDRG 145 (344)
Q Consensus 112 T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~G 145 (344)
|+.++.+|.+.+..+++ +.++||++||++++
T Consensus 76 t~~~~~~l~~~~~~~~~---~~~~r~~~wi~~~~ 106 (109)
T PF13243_consen 76 TAAAIAALALAGVYPDD---EAVERGLEWILSHQ 106 (109)
T ss_dssp HHHHHHHHHHHHTT--H---HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcc
Confidence 88899999999998877 99999999999973
No 10
>PLN03012 Camelliol C synthase
Probab=99.69 E-value=1.1e-16 Score=169.36 Aligned_cols=119 Identities=17% Similarity=0.255 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccc-cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCccccc-
Q 044313 26 EIATTALRRAVNIFSALQSSHGHWPADNSGPLFF-NTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHV- 103 (344)
Q Consensus 26 ~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~-~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~- 103 (344)
++++.+|++|++||++.|++||+|.|.++.+.+. |...+.+|...|.. .-+++.++|+++||+++|++|||||+..
T Consensus 586 ~~i~~~i~rAv~~L~~~Q~~DGsW~G~Wgv~y~YgT~~aL~aL~a~g~~--~~~~~~Irrav~fLls~Q~~DGGWGEs~~ 663 (759)
T PLN03012 586 EEINAFIKKAAEYIENIQMLDGSWYGNWGICFTYGTWFALAGLAAAGKT--FNDCEAIRKGVHFLLAAQKDNGGWGESYL 663 (759)
T ss_pred hhhHHHHHHHHHHHHHhcCCCCCCcccccccCCcHHHHHHHHHHHhCcc--CCCcHHHHHHHHHHHHhcCCCCCcCCCCC
Confidence 4468899999999999999999999999877543 44455678777762 1224789999999999999999999732
Q ss_pred -----------CCCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCCCC
Q 044313 104 -----------EGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGAT 148 (344)
Q Consensus 104 -----------~g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG~~ 148 (344)
++.|++++|++|..||..+|....+ .+.++||.+||++++-..
T Consensus 664 Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~--~~~i~Rg~~~Ll~~Q~~d 717 (759)
T PLN03012 664 SCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAERD--PIPLHRAAKLIINSQLEN 717 (759)
T ss_pred CCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCC--cHHHHHHHHHHHHcccCC
Confidence 2469999999999999999986544 158999999999976543
No 11
>PLN02993 lupeol synthase
Probab=99.67 E-value=3.5e-16 Score=165.77 Aligned_cols=120 Identities=17% Similarity=0.222 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCcc-ccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCccccc
Q 044313 25 PEIATTALRRAVNIFSALQSSHGHWPADNSGPLF-FNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHV 103 (344)
Q Consensus 25 ~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~-~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~ 103 (344)
.++++++|+||++||++.|++||+|.|.++.+.+ .|...+.+|...|... -+++.++|+++||+++||+|||||+..
T Consensus 585 ~~ei~~~i~rAv~yL~~~Q~~DGSW~G~Wgv~y~YgT~~aL~aL~a~G~~~--~~~~~IrrAv~fLls~Q~~DGGWGEs~ 662 (763)
T PLN02993 585 TKEIIKSIEKAVQFIESKQTPDGSWYGNWGICFIYATWFALGGLAAAGKTY--NDCLAMRKGVHFLLTIQRDDGGWGESY 662 (763)
T ss_pred hhhHHHHHHHHHHHHHHhcCCCCCcccccccccCcHHHHHHHHHHHcCCCC--CCcHHHHHHHHHHHHhcCCCCCcCcCc
Confidence 3567889999999999999999999999877643 3444556777777631 234789999999999999999999732
Q ss_pred ------------CCCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCCCC
Q 044313 104 ------------EGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGAT 148 (344)
Q Consensus 104 ------------~g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG~~ 148 (344)
++.|++++|++|.+||..+|....+ .+.++||.+||++.+-..
T Consensus 663 ~S~~~~~y~~~~~~~St~~qTAwAllaL~~aG~~~~~--~~~l~Rgi~~L~~~Q~~~ 717 (763)
T PLN02993 663 LSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQAERD--LIPLHRAAKLIITSQLEN 717 (763)
T ss_pred CcCCCcccccCCCCCCchhhHHHHHHHHHHcCCCCCC--cHHHHHHHHHHHhccCCC
Confidence 2469999999999999999986443 268999999999976544
No 12
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.59 E-value=6.1e-15 Score=155.15 Aligned_cols=117 Identities=22% Similarity=0.296 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCcc-ccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCccc--
Q 044313 25 PEIATTALRRAVNIFSALQSSHGHWPADNSGPLF-FNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGL-- 101 (344)
Q Consensus 25 ~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~-~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~-- 101 (344)
.+++.+++++|++||++.|++||+|.+.++.+.. .|+..+.+|..+|.. .+++.++++++||+++||+|||||.
T Consensus 472 ~~~i~~ai~rav~~L~~~Q~~dGsW~g~Wg~~~~Y~T~~al~aL~~~G~~---~~~~~i~rA~~~Ll~~Q~~DGgWg~~~ 548 (634)
T TIGR03463 472 DGRITRAISRGVRFLRSRQREDGSFPGSWGVCFTYGTFHGVMGLRAAGAS---PDDMALQRAAAWLRSYQRADGGWGEVY 548 (634)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCccccCCCCCcHHHHHHHHHHHHcCCC---cCcHHHHHHHHHHHHccCCCCCccCcc
Confidence 4567889999999999999999999988765433 566667788877752 2357899999999999999999986
Q ss_pred -------ccC-CCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCCCC
Q 044313 102 -------HVE-GHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGAT 148 (344)
Q Consensus 102 -------~~~-g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG~~ 148 (344)
|.+ +.|++++|++|..||..+|.. ++ +.++||.+||++++-..
T Consensus 549 ~s~~~~~y~~~~~S~~~~TA~Al~aL~~~g~~-~~---~~i~rgi~~L~~~Q~~d 599 (634)
T TIGR03463 549 ESCLQARYVEGKQSQAVMTSWALLALAEAGEG-GH---DAVQRGVAWLRSRQQED 599 (634)
T ss_pred CccccccccCCCCCcHHHHHHHHHHHHHcCCc-CC---HHHHHHHHHHHHhCCCC
Confidence 222 579999999999999999963 44 78999999999976544
No 13
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.57 E-value=3.6e-15 Score=121.87 Aligned_cols=102 Identities=23% Similarity=0.465 Sum_probs=81.9
Q ss_pred HHHHHHhcCCCCCcccC-CCCCccccHHHHHHHHHhcCCCCCCCHHHHHHH--HHHHHhhccCCCCcccccC-CCccccc
Q 044313 36 VNIFSALQSSHGHWPAD-NSGPLFFNTPMVICLYITGHLNIIFSTEHRKEM--LRYICNHQNEDGGWGLHVE-GHSTMFG 111 (344)
Q Consensus 36 ~~~L~~~Q~~DG~W~g~-~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~--~~~L~~~Q~~DGGWg~~~~-g~s~i~~ 111 (344)
++||++.|++||+|... ..+++..|+..+.+|..+|.. +.++++ ++||.++|++||||+.+.. .++++..
T Consensus 1 v~~L~~~Q~~dGgw~~~~~~~~~~~T~~al~aL~~~g~~------~~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~ 74 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGFGGPSDVWDTAFALLALAALGEE------PDRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYT 74 (113)
T ss_dssp HHHHHHHB-TTSSBBSSTS-BEHHHHHHHHHHHHHHTSH------HCHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHH
T ss_pred CHhhHHHcCCCCCCcCCCCCCCHHHHHHHHHHHHHhCCc------ccHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHH
Confidence 58999999999999984 455566777778888888862 236666 9999999999999998874 6789999
Q ss_pred hHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCC
Q 044313 112 TVFNYICMRLLGEGPDGGENSGCTRARKWILDRGG 146 (344)
Q Consensus 112 T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG 146 (344)
|..++.+|.++|.+.+. +.++||++||++++-
T Consensus 75 t~~~l~~l~~~~~~~~~---~~~~~a~~~l~~~Q~ 106 (113)
T PF13249_consen 75 TYVALAALELLGRPDDE---EAVRKAVDWLLSCQN 106 (113)
T ss_dssp HHHHHHHHHHHT-GGCH---TTHCCHHHHHHHTB-
T ss_pred HHHHHHHHHHcCCCccc---HHHHHHHHHHHHhcC
Confidence 99999999999998765 789999999999763
No 14
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.54 E-value=2.9e-14 Score=150.00 Aligned_cols=113 Identities=21% Similarity=0.335 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccCCCCCcc-ccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccc-----
Q 044313 29 TTALRRAVNIFSALQSSHGHWPADNSGPLF-FNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLH----- 102 (344)
Q Consensus 29 ~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~-~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~----- 102 (344)
+++|+||++||++.|++||+|.|.++.+.+ .|...+.+|...|.. .+++.++++++||+++||+|||||..
T Consensus 470 ~~~i~rav~~L~~~Q~~dG~W~g~wg~~~~Y~T~~al~aL~~~g~~---~~~~~i~rAv~wL~~~Q~~DGGWge~~~sy~ 546 (635)
T TIGR01507 470 WPVIERAVEYLKREQEPDGSWFGRWGVNYLYGTGAVLSALKAVGID---TREPYIQKALAWLESHQNPDGGWGEDCRSYE 546 (635)
T ss_pred hHHHHHHHHHHHHccCCCCCCccCCCCccccHHHHHHHHHHHcCCC---cccHHHHHHHHHHHHhcCCCCCCCCCCcccc
Confidence 679999999999999999999888775543 344445667766642 23578999999999999999999953
Q ss_pred ----cC-CCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCCCC
Q 044313 103 ----VE-GHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGAT 148 (344)
Q Consensus 103 ----~~-g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG~~ 148 (344)
.+ |.|+++.|++|++||+.+|.. ++ +.++||.+||.+++-..
T Consensus 547 ~~~~~g~g~s~~s~TA~AL~AL~~ag~~-~~---~~I~rav~~L~~~Q~~d 593 (635)
T TIGR01507 547 DPAYAGKGASTASQTAWALIALIAAGRA-ES---EAARRGVQYLVETQRPD 593 (635)
T ss_pred cccccCCCCCcHHHHHHHHHHHHHhCCC-Cc---HHHHHHHHHHHHhcCCC
Confidence 23 589999999999999999965 44 78999999999986544
No 15
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.49 E-value=1.7e-13 Score=144.02 Aligned_cols=116 Identities=22% Similarity=0.290 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcccCCCCCcc-ccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccc---
Q 044313 27 IATTALRRAVNIFSALQSSHGHWPADNSGPLF-FNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLH--- 102 (344)
Q Consensus 27 ~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~-~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~--- 102 (344)
++.++|+||++||++.|++||+|.+.++.+.+ .+...+.+|..+|... -..+.++++++||+++|++|||||..
T Consensus 457 ~~~~~i~rAl~~L~~~Q~~DGsw~g~wg~~y~YgT~~al~aL~~~G~~~--~~~~~i~rA~~~L~~~Q~~DGGWge~~~s 534 (621)
T TIGR01787 457 EIRNVLERALEYLRREQRADGSWFGRWGVNYTYGTGFVLSALAAAGRTY--RNCPEVQKACDWLLSRQMPDGGWGEDCFS 534 (621)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCcccCCCCCchhHHHHHHHHHHhCCcc--cCCHHHHHHHHHHHhhcCCCCCCCcCCcc
Confidence 46689999999999999999999998876543 3444455677777531 11378999999999999999999963
Q ss_pred ------cC-CCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCCCC
Q 044313 103 ------VE-GHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGAT 148 (344)
Q Consensus 103 ------~~-g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG~~ 148 (344)
.+ +.|++++|++|+.||+.+|.. +. +.++||.+||.+++-..
T Consensus 535 ~~~~~y~~~~~S~~s~Ta~AL~AL~~ag~~-~~---~ai~rgv~~L~~~Q~~d 583 (621)
T TIGR01787 535 YEDPSYVGSGGSTPSQTGWALMALIAAGEA-DS---EAIERGVKYLLETQRPD 583 (621)
T ss_pred ccccccCCCCCCCHHHHHHHHHHHHHcCcc-ch---HHHHHHHHHHHHhCCCC
Confidence 22 579999999999999999864 33 68999999999976544
No 16
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.39 E-value=2e-12 Score=136.45 Aligned_cols=115 Identities=23% Similarity=0.319 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcccCCCCCcc-ccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccc---
Q 044313 27 IATTALRRAVNIFSALQSSHGHWPADNSGPLF-FNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLH--- 102 (344)
Q Consensus 27 ~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~-~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~--- 102 (344)
+++++++||++||.+.|++||+|.+.++.+.+ .++..+.+|..+|.. ...++.++++++||+++|++||||+..
T Consensus 473 ~i~~~i~rAv~~L~~~Q~~DGsW~g~wg~~~~Y~T~~al~AL~~~G~~--~~~~~~i~~a~~~L~s~Q~~DGgWge~~~s 550 (634)
T cd02892 473 EIDPAIRRAVKYLLREQEPDGSWYGRWGVCYIYGTWFALEALAAAGED--YENSPYIRKACDFLLSKQNPDGGWGESYLS 550 (634)
T ss_pred HHHHHHHHHHHHHHHccCCCCCccccCCCccHHHHHHHHHHHHHhCCc--ccCcHHHHHHHHHHHhcCCCCCCCCCcccc
Confidence 57789999999999999999999888765432 344445677777752 123568999999999999999999862
Q ss_pred ------c-CCCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCCC
Q 044313 103 ------V-EGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGA 147 (344)
Q Consensus 103 ------~-~g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG~ 147 (344)
. ++.|++++|++|+.||..+|.. ++ +.++|+.+||.+++-.
T Consensus 551 ~~~~~~~~~~~s~~~~TA~AllaLl~~g~~-~~---~~i~r~i~wL~~~Q~~ 598 (634)
T cd02892 551 YEDKSYAGGGRSTVVQTAWALLALMAAGEP-DS---EAVERGIKYLLNTQLP 598 (634)
T ss_pred ccCcccCCCCCCcHHHHHHHHHHHHHcCCC-Ch---HHHHHHHHHHHHcCCC
Confidence 1 2678999999999999999874 54 7899999999997643
No 17
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.36 E-value=1.7e-12 Score=133.98 Aligned_cols=118 Identities=19% Similarity=0.287 Sum_probs=97.0
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccccHHHH--HHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCccc
Q 044313 24 TPEIATTALRRAVNIFSALQSSHGHWPADNSGPLFFNTPMV--ICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGL 101 (344)
Q Consensus 24 ~~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~~a~~v--~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~ 101 (344)
-.+++..+|.+|++|+.+.|.+||+|.|.++.+ |+.+++. -++...|. +.-+++.++++|++|+++|++|||||.
T Consensus 583 r~~Ei~~~i~~av~~ie~~Q~~DGSWyGsWgvC-FtY~t~Fa~~gl~aaGk--ty~nc~~irka~~Fll~~Q~~~GGWgE 659 (760)
T KOG0497|consen 583 RKKEIEKSIEKAVEFIEKLQLPDGSWYGSWGVC-FTYGTWFALRGLAAAGK--TYENCEAIRKACDFLLSKQNPDGGWGE 659 (760)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHH-HHHHHHHhcchhhhcch--hhhccHHHHHHHHHHHhhhcccCCCcc
Confidence 446899999999999999999999999999664 5555543 35666675 445578899999999999999999998
Q ss_pred ccC------------CCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCC
Q 044313 102 HVE------------GHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGG 146 (344)
Q Consensus 102 ~~~------------g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG 146 (344)
.+. ..|++.+|++|.+||...|....+. -.+.||.+.|...|=
T Consensus 660 s~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd~--~P~hr~ak~linsQ~ 714 (760)
T KOG0497|consen 660 SYLSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERDP--LPLHRAAKVLINSQL 714 (760)
T ss_pred ccccCccccccccccccccchhHHHHHHHHHhcCCccccc--chHHHHHHHHHhccc
Confidence 643 3589999999999999999876651 269999999998763
No 18
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.32 E-value=3.3e-11 Score=115.26 Aligned_cols=117 Identities=15% Similarity=0.136 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCccc--CC--CCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCccc
Q 044313 26 EIATTALRRAVNIFSALQSSHGHWPA--DN--SGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGL 101 (344)
Q Consensus 26 ~~v~~ai~ra~~~L~~~Q~~DG~W~g--~~--~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~ 101 (344)
++..+-|+.|...+++.|++||+|.. .. .++..+|+..+.++...+. ...+++..++++++||.++|++||||+.
T Consensus 45 ~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~-~~~v~~~~i~ra~~wL~~~Q~~dG~f~~ 123 (292)
T cd02897 45 SKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARP-FIYIDENVLQQALTWLSSHQKSNGCFRE 123 (292)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHhcCCCCCCCC
Confidence 34555688999999999999999943 11 4567888888777766652 2356678899999999999999999985
Q ss_pred cc--------C-CCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCC
Q 044313 102 HV--------E-GHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGG 146 (344)
Q Consensus 102 ~~--------~-g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG 146 (344)
+. + .++++..|+.+..||...|.+.++ +.++||.+||.+.-.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~~~---~~i~~a~~yL~~~~~ 174 (292)
T cd02897 124 VGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPSER---PVVEKALSCLEAALD 174 (292)
T ss_pred CCcccChhhcCCCCCCcchHHHHHHHHHhcCCcccc---HHHHHHHHHHHHhcc
Confidence 31 1 246688999999999999987766 899999999998543
No 19
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.25 E-value=1e-10 Score=108.14 Aligned_cols=120 Identities=19% Similarity=0.262 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcccCC---CCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCccc
Q 044313 25 PEIATTALRRAVNIFSALQSSHGHWPADN---SGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGL 101 (344)
Q Consensus 25 ~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~---~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~ 101 (344)
+......++++++||.+.|++||+|.... ..++..|+..+.++..++... ..+.+.++++++||.++|++||||+.
T Consensus 47 ~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~-~~~~~~~~~~~~~l~~~q~~dG~~~~ 125 (300)
T cd00688 47 RDKADENIEKGIQRLLSYQLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYI-AVDRIDLARALNWLLSLQNEDGGFRE 125 (300)
T ss_pred cccchHHHHHHHHHHHhccCCCCCccCCCCCCCcchHhHHHHHHHHHHcCCcc-ccCHHHHHHHHHHHHHccCCCCCeee
Confidence 34577889999999999999999998754 346777888888888777532 34567899999999999999999987
Q ss_pred ccCC-------CccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCCCC
Q 044313 102 HVEG-------HSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGAT 148 (344)
Q Consensus 102 ~~~g-------~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG~~ 148 (344)
.... .+++..|+.++.+|..+|...++ +.+.++.+||.++.-..
T Consensus 126 ~~~~~~~~~~~~~~~~~t~~al~aL~~~~~~~~~---~~~~~~~~~l~~~q~~~ 176 (300)
T cd00688 126 DGPGNHRIGGDESDVRLTAYALIALALLGKLDPD---PLIEKALDYLLSCQNYD 176 (300)
T ss_pred ecCCCCcccCCCCcccHHHHHHHHHHHcCCCCCc---HHHHHHHHHHHHHhcCC
Confidence 6553 68999999999999999987654 78999999999976543
No 20
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.21 E-value=9.9e-11 Score=113.76 Aligned_cols=115 Identities=23% Similarity=0.347 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcccCCCCC-ccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccc---
Q 044313 27 IATTALRRAVNIFSALQSSHGHWPADNSGP-LFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLH--- 102 (344)
Q Consensus 27 ~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~-~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~--- 102 (344)
++.++++++++||.+.|++||+|.+.+..+ .+.++..+.+|..+|.. ...+.++++++||.++|++||||+..
T Consensus 188 ~~~~~i~~a~~~L~~~q~~dG~w~~~~~~~~~y~ta~a~~aL~~~g~~---~~~~~~~~~~~~L~~~Q~~dG~w~~~~~~ 264 (348)
T cd02889 188 EIDPAIRRAVKYLEREQEPDGSWYGRWGVCFIYGTWFALEALAAAGED---ENSPYVRKACDWLLSKQNPDGGWGESYES 264 (348)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCccccCCCcchHHHHHHHHHHHHcCCC---cCcHHHHHHHHHHHHccCCCCCcCCcccc
Confidence 566899999999999999999998765433 23345455567777752 23577999999999999999999852
Q ss_pred -------cCCCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCCCC
Q 044313 103 -------VEGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGAT 148 (344)
Q Consensus 103 -------~~g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG~~ 148 (344)
.++.+++..|+.++.||...|.. ++ +.++||.+||.+++-..
T Consensus 265 ~~~~~~~~~~~~~~~~Ta~al~aL~~~g~~-~~---~~v~~a~~wL~~~Q~~d 313 (348)
T cd02889 265 YEDPSYAGGGRSTVVQTAWALLALMAAGEP-DS---EAVKRGVKYLLNTQQED 313 (348)
T ss_pred cccccccCCCCCcHHHHHHHHHHHHhcCCC-CH---HHHHHHHHHHHHhcCCC
Confidence 13578999999999999999875 44 88999999999976443
No 21
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.21 E-value=4.8e-11 Score=115.93 Aligned_cols=113 Identities=21% Similarity=0.352 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhcCCCCCcccCCCCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhc--------------cCCC
Q 044313 32 LRRAVNIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQ--------------NEDG 97 (344)
Q Consensus 32 i~ra~~~L~~~Q~~DG~W~g~~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q--------------~~DG 97 (344)
|++|++||.++|++||+|.... +++..|+..+.++...|.. +...+.++|+++||.++| .+||
T Consensus 1 ~~~~~~~L~~~Q~~dG~W~~~~-~~~~~Ta~~~~al~~~g~~--~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~G 77 (348)
T cd02889 1 IRRALDFLLSLQAPDGHWPGEY-SQVWDTALALQALLEAGLA--PEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKG 77 (348)
T ss_pred CchHHHHHHHhccCCCCccccC-CchHHHHHHHHHHHHcCCC--CccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCC
Confidence 5789999999999999999877 7777788777788888752 123578999999999999 7999
Q ss_pred CcccccC--CCccccchHHHHHHHHHcCCCCC---CCCchHHHHHHHHHHHcCCC
Q 044313 98 GWGLHVE--GHSTMFGTVFNYICMRLLGEGPD---GGENSGCTRARKWILDRGGA 147 (344)
Q Consensus 98 GWg~~~~--g~s~i~~T~~ay~AL~l~G~~~~---~~~~p~m~rAr~~Il~~GG~ 147 (344)
||+.... +.++++.|+.+..||..++..+. ...+..+.+|.+||++++-.
T Consensus 78 gw~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~ 132 (348)
T cd02889 78 GWAFSTANQGYPDSDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQNS 132 (348)
T ss_pred cCcccCcCCCCCCCCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHhccC
Confidence 9984332 34677899999999988875431 00026899999999997543
No 22
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=99.18 E-value=2.3e-10 Score=108.97 Aligned_cols=106 Identities=24% Similarity=0.300 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhcCCCCCcccCCCC--CccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCccc
Q 044313 32 LRRAVNIFSALQSSHGHWPADNSG--PLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTM 109 (344)
Q Consensus 32 i~ra~~~L~~~Q~~DG~W~g~~~~--~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~g~s~i 109 (344)
.+++++|+.+.|++||+|.+...+ .+..+-..|.+++.+|... .+.++++++||.+.|++||||+..++++++.
T Consensus 100 ~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~----~~~~~~~~~~l~~~Q~~dGGf~~~~~~es~~ 175 (286)
T cd02890 100 REKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNILT----DIDKEKLIDYILSCQNYDGGFGGVPGAESHG 175 (286)
T ss_pred HHHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCch----hhhHHHHHHHHHHhCCCCCCcCCCCCCCCCc
Confidence 467999999999999999875433 3333444566788888632 4679999999999999999999988899999
Q ss_pred cchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcC
Q 044313 110 FGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRG 145 (344)
Q Consensus 110 ~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~G 145 (344)
..|.+|..+|+++|... . +...++++||.+++
T Consensus 176 ~~t~~av~sL~~l~~~~-~---~~~~~~~~~L~~~q 207 (286)
T cd02890 176 GYTFCAVASLALLGRLD-L---IDKERLLRWLVERQ 207 (286)
T ss_pred cHhHHHHHHHHHcCCCc-c---cCHHHHHHHHHHhC
Confidence 99999999999999853 3 56999999999874
No 23
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=99.14 E-value=6e-10 Score=106.76 Aligned_cols=116 Identities=22% Similarity=0.340 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcccCCCCC--ccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccccC
Q 044313 27 IATTALRRAVNIFSALQSSHGHWPADNSGP--LFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVE 104 (344)
Q Consensus 27 ~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~--~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~ 104 (344)
.+++..+++++|+.+.|++||+|.+...+. +-.+-..+.++.+++..+ ...++++++||.+.|++||||+..++
T Consensus 97 ~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~----~i~~~~~~~~l~~~q~~dGGF~~~~~ 172 (287)
T cd02894 97 KIDENKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKLD----LIDVDKAVDYLLSCYNFDGGFGCRPG 172 (287)
T ss_pred hccHHHHHHHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHHHHHhCCcc----hhhHHHHHHHHHHcCCCCCCcCCCCC
Confidence 455568899999999999999998864333 222333445677777532 34589999999999999999999988
Q ss_pred CCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHc----CCCCCc
Q 044313 105 GHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDR----GGATGI 150 (344)
Q Consensus 105 g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~----GG~~~~ 150 (344)
++++.-.|.+|..+|.++|.... ....++++||.++ ||..+.
T Consensus 173 ~es~~~~t~cavasL~llg~~~~----~~~~~~~~~L~~~q~~~GGf~gr 218 (287)
T cd02894 173 AESHAGQIFCCVGALAILGSLDL----IDRDRLGWWLCERQLPSGGLNGR 218 (287)
T ss_pred CCCchhHHHHHHHHHHHcCcccc----cCHHHHHHHHHHhCCCCCCcCCC
Confidence 99999999999999999997643 3489999999986 465543
No 24
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=99.14 E-value=8.4e-10 Score=104.04 Aligned_cols=129 Identities=16% Similarity=0.187 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccc---CCCCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCccc
Q 044313 25 PEIATTALRRAVNIFSALQSSHGHWPA---DNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGL 101 (344)
Q Consensus 25 ~~~v~~ai~ra~~~L~~~Q~~DG~W~g---~~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~ 101 (344)
.+++.+.|++++++|.+.|++||+|.. ...++.++|+..+.+|..++... ..+++.++++++||.++|++||+|..
T Consensus 44 ~~~~~~~i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~-~v~~~~i~ra~~~L~~~q~~~g~~~~ 122 (282)
T cd02891 44 REKALEYIRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYI-DVDENVLARALGWLVPQQKEDGSFRE 122 (282)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhccCCCCCcCC
Confidence 568999999999999999999999943 22567788887777776654322 35678899999999999999999975
Q ss_pred ccC---------CCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 044313 102 HVE---------GHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGATGIPSWGKTWLS 159 (344)
Q Consensus 102 ~~~---------g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG~~~~~~~tk~~LA 159 (344)
... ..+.+..|+.+..+|...|... . +.+.+|++||.++-.- ....+++..+|
T Consensus 123 ~~~~~~~~~~~~~~~~~~~tA~al~~L~~~g~~~-~---~~~~~a~~~L~~~~~~-~~~~~~~a~la 184 (282)
T cd02891 123 LGPVIHREMKGGVDDSVSLTAYVLIALAEAGKAC-D---ASIEKALAYLETQLDG-LLDPYALAILA 184 (282)
T ss_pred CCCccCHhhcCCcCCCcchHHHHHHHHHHhcccc-h---HHHHHHHHHHHHhccc-CCChHHHHHHH
Confidence 432 2356678999999999888754 3 6899999999986542 33556665544
No 25
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.11 E-value=1.2e-09 Score=105.16 Aligned_cols=120 Identities=10% Similarity=0.117 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcc--cCCCCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCccccc
Q 044313 26 EIATTALRRAVNIFSALQSSHGHWP--ADNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHV 103 (344)
Q Consensus 26 ~~v~~ai~ra~~~L~~~Q~~DG~W~--g~~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~ 103 (344)
+++.+.|++|++.+++.|++||+|. +...+++++|+..+..+...+... .++++.++++++||.++|++||||+...
T Consensus 48 ~~~~~~i~~g~~r~l~~q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~-~v~~~~l~~a~~wL~~~Q~~dG~f~e~~ 126 (297)
T cd02896 48 DEALKYIRQGYQRQLSYRKPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYI-PVDQNVICGSVNWLISNQKPDGSFQEPS 126 (297)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCccCCCCCCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCCCCeeCCCC
Confidence 5788889999999999999999994 234677888887776666665322 4668889999999999999999998642
Q ss_pred --------CC----CccccchHHHHHHHHHcCCCCCC---CCchHHHHHHHHHHHcCC
Q 044313 104 --------EG----HSTMFGTVFNYICMRLLGEGPDG---GENSGCTRARKWILDRGG 146 (344)
Q Consensus 104 --------~g----~s~i~~T~~ay~AL~l~G~~~~~---~~~p~m~rAr~~Il~~GG 146 (344)
++ ++++.-|+.+..||.-.|..... ..++.+.||.+||.++..
T Consensus 127 ~~~~~~m~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~ 184 (297)
T cd02896 127 PVIHREMTGGVEGSEGDVSLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQLP 184 (297)
T ss_pred CccChhccCCccccCCCccchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhcc
Confidence 11 36889999999999998864210 002689999999998653
No 26
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=98.99 E-value=3.4e-09 Score=97.94 Aligned_cols=112 Identities=28% Similarity=0.461 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcccCCC---------CCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCC
Q 044313 28 ATTALRRAVNIFSALQSSHGHWPADNS---------GPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGG 98 (344)
Q Consensus 28 v~~ai~ra~~~L~~~Q~~DG~W~g~~~---------~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGG 98 (344)
....++++++||.+.|++||+|..... .....++..+.++..+|... ..+.++++++||.++|++|||
T Consensus 102 ~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~t~~al~aL~~~~~~~---~~~~~~~~~~~l~~~q~~~g~ 178 (300)
T cd00688 102 DRIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLD---PDPLIEKALDYLLSCQNYDGG 178 (300)
T ss_pred CHHHHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccHHHHHHHHHHHcCCCC---CcHHHHHHHHHHHHHhcCCCC
Confidence 345689999999999999999986543 34455666677787777532 146799999999999999999
Q ss_pred cccccCCCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCCCC
Q 044313 99 WGLHVEGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGAT 148 (344)
Q Consensus 99 Wg~~~~g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG~~ 148 (344)
| -..+.++.+.|+.+..||..+|.. .. +.+.++.+||++++-..
T Consensus 179 ~--~~~~~~~~~~t~~~~~aL~~~~~~-~~---~~~~~~~~~L~~~q~~~ 222 (300)
T cd00688 179 F--GPGGESHGYGTACAAAALALLGDL-DS---PDAKKALRWLLSRQRPD 222 (300)
T ss_pred c--CCCccccHHHHHHHHHHHHHcCCc-ch---HHHHHHHHHHHHhcCCC
Confidence 9 455778999999999999999875 33 68999999999876544
No 27
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=98.90 E-value=2e-08 Score=97.86 Aligned_cols=125 Identities=21% Similarity=0.307 Sum_probs=92.0
Q ss_pred HHHHHHHHHHhcCCCCCcccCCCCCccc--cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCccc
Q 044313 32 LRRAVNIFSALQSSHGHWPADNSGPLFF--NTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTM 109 (344)
Q Consensus 32 i~ra~~~L~~~Q~~DG~W~g~~~~~~~~--~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~g~s~i 109 (344)
.+++++|+.+.|++||+|.+.-.+..-+ +-..+.++++++..+ ...++++++||.++|++||||+..++++++.
T Consensus 106 ~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~~----~i~~~~~~~~i~scq~~dGGF~~~p~~esh~ 181 (316)
T PLN03201 106 ADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLD----KINVEKAVDYIVSCKNFDGGFGCTPGGESHA 181 (316)
T ss_pred HHHHHHHHHHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCccc----hhHHHHHHHHHHHhcCCCCCcCCCCCCCCcc
Confidence 3579999999999999999854333322 222344577777532 3458999999999999999999999999999
Q ss_pred cchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcC----CCCCcc---------hHHHHHHHHhCCc
Q 044313 110 FGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRG----GATGIP---------SWGKTWLSILGVY 164 (344)
Q Consensus 110 ~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~G----G~~~~~---------~~tk~~LAl~G~~ 164 (344)
..|..|..+|.++|....- ...+.+.||.+++ |..+-+ .|.=--|+++|..
T Consensus 182 g~T~caiaaL~llg~~~~~----d~~~l~~wL~~rQ~~~GGf~grp~k~~D~cys~w~~a~L~ll~~~ 245 (316)
T PLN03201 182 GQIFCCVGALAITGSLHHV----DKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIIIDRV 245 (316)
T ss_pred ceehHHHHHHHHcCccccC----CHHHHHHHHHHhCCCCCCcCCCCCCCCchHHHHHHHHHHHHhccc
Confidence 9999999999999954322 2466789998864 665554 3344446666654
No 28
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=98.90 E-value=1.1e-08 Score=97.56 Aligned_cols=113 Identities=16% Similarity=0.172 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHhc-CCCCCcccCC--CCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCC
Q 044313 29 TTALRRAVNIFSALQ-SSHGHWPADN--SGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEG 105 (344)
Q Consensus 29 ~~ai~ra~~~L~~~Q-~~DG~W~g~~--~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~g 105 (344)
...++++++|+++.| ++||.|.+.. .+++..|...+.++.++|.. ..+...++++++||.+.|++||||+..+.+
T Consensus 46 ~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~T~~al~~l~llg~~--~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~ 123 (286)
T cd02890 46 DENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLASTYAAVLSLAILGDD--ALSRIDREKIYKFLSSLQNPDGSFRGDLGG 123 (286)
T ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHHHHHHHHHHHHcCcc--ccchhhHHHHHHHHHHhcCCCCCcccCCCC
Confidence 456789999999999 9999998853 34455566666778888852 122456889999999999999999877778
Q ss_pred CccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCCC
Q 044313 106 HSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGA 147 (344)
Q Consensus 106 ~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG~ 147 (344)
++++..|-.|..+|.++|... + ....++.+||.+.+-.
T Consensus 124 ~~d~~~ty~al~~l~ll~~~~-~---~~~~~~~~~l~~~Q~~ 161 (286)
T cd02890 124 EVDTRFVYCALSILSLLNILT-D---IDKEKLIDYILSCQNY 161 (286)
T ss_pred CchHHHHHHHHHHHHHhCCch-h---hhHHHHHHHHHHhCCC
Confidence 899999999999999999865 3 5799999999997633
No 29
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=98.90 E-value=1.5e-08 Score=98.30 Aligned_cols=109 Identities=21% Similarity=0.295 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhcCCCCCcccCC-----CCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCC
Q 044313 32 LRRAVNIFSALQSSHGHWPADN-----SGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGH 106 (344)
Q Consensus 32 i~ra~~~L~~~Q~~DG~W~g~~-----~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~g~ 106 (344)
.++.++|+.+.|++||+|.+.. +..+-.+-..|..++++|..+. ....++++++||.+.|+.|||++..++++
T Consensus 114 r~~i~~~l~~~q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~--~~~d~~~li~~l~s~Q~~dGGF~~~~~~E 191 (307)
T cd02895 114 RKAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSE--EDIDKEKLIDYIKSSQSYDGGFGQGPGLE 191 (307)
T ss_pred HHHHHHHHHHhCCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhCCCcc--ccccHHHHHHHHHHccCCCCCccCCCCCC
Confidence 4678999999999999998765 4555555556667888886431 12347899999999999999999999999
Q ss_pred ccccchHHHHHHHHHcCCCCC--CCCchHHHHHHHHHHHcC
Q 044313 107 STMFGTVFNYICMRLLGEGPD--GGENSGCTRARKWILDRG 145 (344)
Q Consensus 107 s~i~~T~~ay~AL~l~G~~~~--~~~~p~m~rAr~~Il~~G 145 (344)
++.-.|-+|..+|.++|...+ . ....+.++||++++
T Consensus 192 sh~g~Tyca~asL~lL~~~~~~~~---~~~~~l~~wL~~rQ 229 (307)
T cd02895 192 SHGGSTFCAIASLSLLGKLEELSE---KFLERLKRWLVHRQ 229 (307)
T ss_pred ccccHHHHHHHHHHHcCCcccccc---ccHHHHHHHHHHhc
Confidence 999999999999999998642 2 45899999998865
No 30
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=98.78 E-value=9.7e-09 Score=71.25 Aligned_cols=43 Identities=30% Similarity=0.511 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhccCCCCcccccCCCccccchHHHHHHHHHcC
Q 044313 81 HRKEMLRYICNHQNEDGGWGLHVEGHSTMFGTVFNYICMRLLG 123 (344)
Q Consensus 81 ~~~~~~~~L~~~Q~~DGGWg~~~~g~s~i~~T~~ay~AL~l~G 123 (344)
.++++++||+++|++||||+..+++++++..|.+++.+|+++|
T Consensus 2 d~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 2 DVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp HHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 3789999999999999999999999999999999999999986
No 31
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=98.72 E-value=1.9e-07 Score=90.30 Aligned_cols=130 Identities=22% Similarity=0.307 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHhcCCCCCcccCC--CCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCcc
Q 044313 31 ALRRAVNIFSALQSSHGHWPADN--SGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHST 108 (344)
Q Consensus 31 ai~ra~~~L~~~Q~~DG~W~g~~--~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~g~s~ 108 (344)
-.++.++|+.+.|++||++.+.. ++.+..|-..+..+.++|..+ .++.-.++++++||.+.|++||||+..++++++
T Consensus 48 ~~~~~i~~i~~~q~~~GgF~~~~~~~~h~~~Ty~A~~~L~ll~~~~-~~~~id~~~~~~~l~~~q~~dGgf~~~~~~e~D 126 (299)
T cd02893 48 YADDVISFLRRCQNPSGGFGGGPGQLPHLATTYAAVNALAIIGTEE-AYDVIDREALYKFLLSLKQPDGSFRMHVGGEVD 126 (299)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCccHHHHHHHHHHHHHhCCch-hhhHhhHHHHHHHHHHhcCCCCCeeCCCCCCch
Confidence 35789999999999999998864 344444444556677777421 122345788999999999999999998889999
Q ss_pred ccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHc----CCCCCcc---------hHHHHHHHHhCCcC
Q 044313 109 MFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDR----GGATGIP---------SWGKTWLSILGVYD 165 (344)
Q Consensus 109 i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~----GG~~~~~---------~~tk~~LAl~G~~~ 165 (344)
+-.|-.|...+.++|..++ ..+.++.+||.+. ||..+.+ .++=--|+++|..+
T Consensus 127 ~r~tycava~~~lL~~~~~----~~~~~~~~~l~~cQ~~dGGF~~~p~~e~h~~yTfcavasL~llg~~~ 192 (299)
T cd02893 127 VRGTYCAISVASLLNILTD----ELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFCALAALAILGKPD 192 (299)
T ss_pred HhHHHHHHHHHHHhCCCch----hhHHHHHHHHHHcCCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCcc
Confidence 9888888888999987643 4589999999986 4665543 22224456666654
No 32
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=98.65 E-value=2.1e-08 Score=81.68 Aligned_cols=63 Identities=24% Similarity=0.503 Sum_probs=45.6
Q ss_pred HHHHHHHhcCCCCCcccCCC---CCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcc
Q 044313 35 AVNIFSALQSSHGHWPADNS---GPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWG 100 (344)
Q Consensus 35 a~~~L~~~Q~~DG~W~g~~~---~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg 100 (344)
|++||.++|++||+|..... .++..+...+.++..++..+ ..+.++++++||+++|++||||+
T Consensus 47 ~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~~l~~l~~~~~~~---~~~~~~~a~~~l~~~Q~~dGg~~ 112 (113)
T PF13249_consen 47 AVEWLLSQQNPDGGWGSNPDGGPPDVYTTYVALAALELLGRPD---DEEAVRKAVDWLLSCQNPDGGWG 112 (113)
T ss_dssp HHHHHHHHB-TTSGBBSSTTTT-BSHHHHHHHHHHHHHHT-GG---CHTTHCCHHHHHHHTB-TTSSB-
T ss_pred HHHHHHHhCCCCCCccCCCCCCCccHHHHHHHHHHHHHcCCCc---ccHHHHHHHHHHHHhcCCCCCCC
Confidence 59999999999999988642 23344455556777777533 14679999999999999999996
No 33
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=98.65 E-value=3e-07 Score=88.90 Aligned_cols=105 Identities=15% Similarity=0.197 Sum_probs=82.6
Q ss_pred HHHHHHHHHhcCCCCCcccCCCCC--ccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCcccc
Q 044313 33 RRAVNIFSALQSSHGHWPADNSGP--LFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTMF 110 (344)
Q Consensus 33 ~ra~~~L~~~Q~~DG~W~g~~~~~--~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~g~s~i~ 110 (344)
++.++|+.+.|++||+|.....+. +-.+-..+..+++++.. +++.++++++||.+.|+.|||.+-.++.+++.-
T Consensus 101 ~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL~~~----~~~~~~~~~~~l~~cQ~~dGGF~~~p~~e~h~~ 176 (299)
T cd02893 101 EALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLLNIL----TDELFEGVAEYILSCQTYEGGFGGVPGNEAHGG 176 (299)
T ss_pred HHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHhCCC----chhhHHHHHHHHHHcCCCCCCcCCCCCCCCCcc
Confidence 459999999999999998764332 22222234457778753 356789999999999999999998888889999
Q ss_pred chHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcC
Q 044313 111 GTVFNYICMRLLGEGPDGGENSGCTRARKWILDRG 145 (344)
Q Consensus 111 ~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~G 145 (344)
.|.++..+|.++|.... ....+.++||++++
T Consensus 177 yTfcavasL~llg~~~~----~d~~~l~~wl~~~q 207 (299)
T cd02893 177 YTFCALAALAILGKPDK----LDLESLLRWLVARQ 207 (299)
T ss_pred HHHHHHHHHHHcCCccc----cCHHHHHHHHHhhc
Confidence 99999999999986432 45889999999764
No 34
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=98.64 E-value=9.1e-09 Score=83.75 Aligned_cols=64 Identities=23% Similarity=0.432 Sum_probs=15.9
Q ss_pred HHHHHHHHHhhccCCCCcccccCCCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCCCCCc
Q 044313 82 RKEMLRYICNHQNEDGGWGLHVEGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGATGI 150 (344)
Q Consensus 82 ~~~~~~~L~~~Q~~DGGWg~~~~g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG~~~~ 150 (344)
|+++++||+++|++||||+-. ..++++.|+.+..+|+..|..... ++++||.+||++++...+.
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~~--~~~~~~~t~~~~~al~~~~~~~~~---~ai~ka~~~l~~~Q~~dG~ 64 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGYN--WGSDVFVTAALILALAAAGDAAVD---EAIKKAIDWLLSHQNPDGG 64 (109)
T ss_dssp ------------------------------------------TS-SS---BSSHHHHHHHHH---TTS-
T ss_pred Ccccccccccccccccccccc--ccccccccccccccccccCCCCcH---HHHHHHHHHHHHhcCCCCC
Confidence 578999999999999999633 347799999999999999976555 8999999999999866543
No 35
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=98.62 E-value=3.1e-07 Score=87.86 Aligned_cols=112 Identities=14% Similarity=0.197 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccC-----------CCCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhh-----
Q 044313 29 TTALRRAVNIFSALQSSHGHWPAD-----------NSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNH----- 92 (344)
Q Consensus 29 ~~ai~ra~~~L~~~Q~~DG~W~g~-----------~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~----- 92 (344)
+.+|++|++||.+.|++||+|... ....+.+|+..++++.-.|..+ .++.++++++||.++
T Consensus 101 ~~~i~ra~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~---~~~~i~~a~~yL~~~~~~~~ 177 (292)
T cd02897 101 ENVLQQALTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPS---ERPVVEKALSCLEAALDSIS 177 (292)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCCcc---ccHHHHHHHHHHHHhcccCC
Confidence 468999999999999999999732 1223445666666665555421 122344444444433
Q ss_pred ---------------------------------ccCCCCcccc---------cC--CCccccchHHHHHHHHHcCCCCCC
Q 044313 93 ---------------------------------QNEDGGWGLH---------VE--GHSTMFGTVFNYICMRLLGEGPDG 128 (344)
Q Consensus 93 ---------------------------------Q~~DGGWg~~---------~~--g~s~i~~T~~ay~AL~l~G~~~~~ 128 (344)
++.+|+|+.. .. ..+++.+|+++.+||...+. ++.
T Consensus 178 ~~y~~al~a~AL~~~~~~~~~~~~~~l~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ve~TAyaLlall~~~~-~~~ 256 (292)
T cd02897 178 DPYTLALAAYALTLAGSEKRPEALKKLDELAISEDGTKHWSRPPPSEEGPSYYWQAPSAEVEMTAYALLALLSAGG-EDL 256 (292)
T ss_pred CHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhccCCCCCCCcCCCcccccccCCCCCcchHHHHHHHHHHHHHcCC-ccH
Confidence 4457888752 11 34689999999999998874 454
Q ss_pred CCchHHHHHHHHHHHcCCC
Q 044313 129 GENSGCTRARKWILDRGGA 147 (344)
Q Consensus 129 ~~~p~m~rAr~~Il~~GG~ 147 (344)
+.+.++.+||.++...
T Consensus 257 ---~~~~~~v~WL~~~q~~ 272 (292)
T cd02897 257 ---AEALPIVKWLAKQRNS 272 (292)
T ss_pred ---hHHHHHHHHHHHcCCC
Confidence 7899999999986543
No 36
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=98.62 E-value=2.1e-07 Score=90.64 Aligned_cols=107 Identities=17% Similarity=0.210 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhcCCCCCcccCCC--CCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCccc
Q 044313 32 LRRAVNIFSALQSSHGHWPADNS--GPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTM 109 (344)
Q Consensus 32 i~ra~~~L~~~Q~~DG~W~g~~~--~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~g~s~i 109 (344)
.++.++|+++.|++||.|.+... ..+..|-..+.++.+++.. +.-.++++++||.+.|++||||+...++++++
T Consensus 58 ~~~~i~~l~~cq~~~GGF~~~~~~~~h~~~Ty~al~~L~ll~~~----~~id~~~~~~~l~s~Q~~dGgF~~~~~ge~D~ 133 (316)
T PLN03201 58 RDEVVSWVMRCQHESGGFGGNTGHDPHILYTLSAVQILALFDRL----DLLDADKVASYVAGLQNEDGSFSGDEWGEIDT 133 (316)
T ss_pred HHHHHHHHHHhcCCCCCcCCCCCCcccHHHHHHHHHHHHHhhhh----hhhhHHHHHHHHHHhcCCCCCccCCCCCCccH
Confidence 47899999999999999987532 2233333344455555432 23347889999999999999999877788999
Q ss_pred cchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCC
Q 044313 110 FGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGG 146 (344)
Q Consensus 110 ~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG 146 (344)
-.|..|..+|.++|... . ..++++.+||.+.+-
T Consensus 134 r~ty~a~a~l~LL~~~~-~---i~~~~~~~~i~scq~ 166 (316)
T PLN03201 134 RFSYCALCCLSLLKRLD-K---INVEKAVDYIVSCKN 166 (316)
T ss_pred HHHHHHHHHHHHhCccc-h---hHHHHHHHHHHHhcC
Confidence 88999999999998532 2 358999999998753
No 37
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=98.61 E-value=2.6e-07 Score=88.62 Aligned_cols=105 Identities=16% Similarity=0.160 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhcCCCCCcccCCCC--CccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCccc
Q 044313 32 LRRAVNIFSALQSSHGHWPADNSG--PLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTM 109 (344)
Q Consensus 32 i~ra~~~L~~~Q~~DG~W~g~~~~--~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~g~s~i 109 (344)
++++++||.+.|++||.|.+.-.+ ..-.+...|.++.++|..+ ...++++++||.++|++|||++-.++..++.
T Consensus 150 ~~~~~~~l~~~q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~----~~~~~~~~~~L~~~q~~~GGf~gr~~k~~D~ 225 (287)
T cd02894 150 VDKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLD----LIDRDRLGWWLCERQLPSGGLNGRPEKLPDV 225 (287)
T ss_pred HHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHcCccc----ccCHHHHHHHHHHhCCCCCCcCCCCCCCCch
Confidence 589999999999999999886433 3334455567788898654 2348899999999999999998888888999
Q ss_pred cchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHc
Q 044313 110 FGTVFNYICMRLLGEGPDGGENSGCTRARKWILDR 144 (344)
Q Consensus 110 ~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~ 144 (344)
.-|-+++.+|.++|...-. ...+.++||++.
T Consensus 226 ~ysf~~~a~l~~l~~~~~~----~~~~l~~~l~~~ 256 (287)
T cd02894 226 CYSWWVLSSLKIIGRLHWI----NKNKLKNFILAC 256 (287)
T ss_pred hHhhHHHHHHHHhcccccc----CHHHHHHHHHHh
Confidence 9999999999999875322 278889999963
No 38
>PLN02710 farnesyltranstransferase subunit beta
Probab=98.56 E-value=7e-07 Score=90.28 Aligned_cols=126 Identities=17% Similarity=0.184 Sum_probs=97.2
Q ss_pred HHHHHHHHHhcCCCCCcccCCCCC--ccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCcccc
Q 044313 33 RRAVNIFSALQSSHGHWPADNSGP--LFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTMF 110 (344)
Q Consensus 33 ~ra~~~L~~~Q~~DG~W~g~~~~~--~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~g~s~i~ 110 (344)
++..+|+.++|++||++.+.-.+. +-.+-..+..++++|..+ .+.++++++||.+.|+.|||.+-.++.+++.-
T Consensus 146 ~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l~----~~~~e~~~~~I~scQ~~dGGF~g~P~~EaH~g 221 (439)
T PLN02710 146 EKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLNILD----DELVKGVGDYILSCQTYEGGIGGEPGAEAHGG 221 (439)
T ss_pred HHHHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCcCc----hhhHHHHHHHHHHhCCCCCCCCCCCCCCCchH
Confidence 578899999999999998754443 333333445577787533 56789999999999999999999999999999
Q ss_pred chHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcC----CCCCcc---------hHHHHHHHHhCCcCC
Q 044313 111 GTVFNYICMRLLGEGPDGGENSGCTRARKWILDRG----GATGIP---------SWGKTWLSILGVYDW 166 (344)
Q Consensus 111 ~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~G----G~~~~~---------~~tk~~LAl~G~~~W 166 (344)
-|-++..+|.++|.... -.+.+.++||.+++ |..+-+ .|.=--|+++|...|
T Consensus 222 yTfcavAsL~LLg~l~~----id~~~l~~WL~~rQ~~~GGF~GR~nKl~D~CYSfW~~a~L~lL~~~~~ 286 (439)
T PLN02710 222 YTFCGLAAMILINEVDR----LDLPSLINWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLQQLVT 286 (439)
T ss_pred HHHHHHHHHHHcCCccc----cCHHHHHHHHHHhcCcCCCcCCCCCCCCCchhhHHHHHHHHHHHHHhh
Confidence 99999999999986432 23889999999876 544332 455567888887766
No 39
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=98.50 E-value=6.4e-07 Score=86.32 Aligned_cols=111 Identities=15% Similarity=0.207 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccCC--------------CCCccccHHHHHHHHHhcCCC--------------------
Q 044313 29 TTALRRAVNIFSALQSSHGHWPADN--------------SGPLFFNTPMVICLYITGHLN-------------------- 74 (344)
Q Consensus 29 ~~ai~ra~~~L~~~Q~~DG~W~g~~--------------~~~~~~~a~~v~~l~~lg~~~-------------------- 74 (344)
+..++++++||.++|++||+|.... ++++.+||..+++|.-.+...
T Consensus 102 ~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~ 181 (297)
T cd02896 102 QNVICGSVNWLISNQKPDGSFQEPSPVIHREMTGGVEGSEGDVSLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLEN 181 (297)
T ss_pred HHHHHHHHHHHHhcCCCCCeeCCCCCccChhccCCccccCCCccchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHH
Confidence 3578999999999999999998542 134556776666554433210
Q ss_pred --CCC----------------CHHHHHHHHHHHHhhccCCCCcccc--------cC-CCc--cccchHHHHHHHHHcCCC
Q 044313 75 --IIF----------------STEHRKEMLRYICNHQNEDGGWGLH--------VE-GHS--TMFGTVFNYICMRLLGEG 125 (344)
Q Consensus 75 --~~~----------------~~~~~~~~~~~L~~~Q~~DGGWg~~--------~~-g~s--~i~~T~~ay~AL~l~G~~ 125 (344)
..+ .++.++++.++|.+.|+.||||+.. .+ +.+ ++.+|+.|+.||...|.
T Consensus 182 ~~~~~~~~Y~~Al~ayALal~~~~~~~~a~~~L~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~vE~TAYALLall~~~~- 260 (297)
T cd02896 182 QLPNLQRPYALAITAYALALADSPLSHAANRKLLSLAKRDGNGWYWWTIDSPYWPVPGPSAITVETTAYALLALLKLGD- 260 (297)
T ss_pred hcccCCChHHHHHHHHHHHHcCChhhHHHHHHHHHHhhhCCCcceeccCcCccCCCCCCchhhhHHHHHHHHHHHhcCC-
Confidence 000 0124578889999999999999853 12 333 89999999999998872
Q ss_pred CCCCCchHHHHHHHHHHHcC
Q 044313 126 PDGGENSGCTRARKWILDRG 145 (344)
Q Consensus 126 ~~~~~~p~m~rAr~~Il~~G 145 (344)
. ....++.+||.++.
T Consensus 261 --~---~~a~~iv~WL~~qr 275 (297)
T cd02896 261 --I---EYANPIARWLTEQR 275 (297)
T ss_pred --c---hhHHHHHHHHHhcC
Confidence 2 45888999999854
No 40
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=98.46 E-value=9.9e-07 Score=85.61 Aligned_cols=111 Identities=18% Similarity=0.246 Sum_probs=84.7
Q ss_pred HHHHHHHHHhc----CCCCCcccCCC------------CCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCC
Q 044313 33 RRAVNIFSALQ----SSHGHWPADNS------------GPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNED 96 (344)
Q Consensus 33 ~ra~~~L~~~Q----~~DG~W~g~~~------------~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~D 96 (344)
++.++|+.+.| ++||++.+... .++..+-..+..+.++|.. .+...++++++||.+.|++|
T Consensus 52 ~~~i~~i~~~q~~~~~~~GgF~~~~~~~~~~~~~~~~~~~l~~ty~Al~~L~lL~~~---~~~idr~~i~~~l~~~q~~d 128 (307)
T cd02895 52 DDIIEWIYSLQVLSNLPRGGFRGSSTLGLPGTASKYDTGNLAMTYFALLSLLILGDD---LSRVDRKAILNFLSKLQLPD 128 (307)
T ss_pred HHHHHHHHHHhcccCCCCCCCCCCCCCccccccccCCcccHHHHHHHHHHHHHhCCc---hhhhhHHHHHHHHHHhCCCC
Confidence 67899999999 99999988542 3333333345567777742 21235899999999999999
Q ss_pred CCccccc---CCCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCCCC
Q 044313 97 GGWGLHV---EGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGAT 148 (344)
Q Consensus 97 GGWg~~~---~g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG~~ 148 (344)
|||+... ++++++-.|-.|..+|.++|..... +...++..+||.+++-.+
T Consensus 129 GgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~~--~~d~~~li~~l~s~Q~~d 181 (307)
T cd02895 129 GSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSEE--DIDKEKLIDYIKSSQSYD 181 (307)
T ss_pred CCccCCcCCcCCCccHHHHHHHHHHHHHhCCCccc--cccHHHHHHHHHHccCCC
Confidence 9999886 6889999999999999999975421 134889999999977543
No 41
>PLN02710 farnesyltranstransferase subunit beta
Probab=98.46 E-value=1.4e-06 Score=88.06 Aligned_cols=129 Identities=18% Similarity=0.235 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhcCCCCCcccCCC--CCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCccc
Q 044313 32 LRRAVNIFSALQSSHGHWPADNS--GPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTM 109 (344)
Q Consensus 32 i~ra~~~L~~~Q~~DG~W~g~~~--~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~g~s~i 109 (344)
-++.++|+.+.|.+||++.|.-+ +.+..|-..|..|.++|..+ .++.-.++++++||.+.|++|||++.++++++++
T Consensus 94 ~~~ii~~l~~cQ~~dGGFgg~pg~~~hl~~TY~Av~~L~iLg~~~-~l~~Idr~~l~~fl~s~q~~dGgF~~~~~gE~D~ 172 (439)
T PLN02710 94 ENDTIDFLSRCQDPNGGYGGGPGQLPHLATTYAAVNTLVTIGGER-ALSSINREKLYTFLLRMKDPSGGFRMHDGGEMDV 172 (439)
T ss_pred HHHHHHHHHHhcCCCcCCCCCCCCCccHHHHHHHHHHHHHcCCch-hhcccCHHHHHHHHHHcCCCCCCcccCCCCCCCc
Confidence 36789999999999999987542 33333444566788888532 1222247899999999999999999999999999
Q ss_pred cchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcC----CCCCcc---------hHHHHHHHHhCCcC
Q 044313 110 FGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRG----GATGIP---------SWGKTWLSILGVYD 165 (344)
Q Consensus 110 ~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~G----G~~~~~---------~~tk~~LAl~G~~~ 165 (344)
-.|-.|...|.++|.-.+ ....+..+||++.+ |..+.| .++=--|+++|..+
T Consensus 173 R~tYcAlail~LL~~l~~----~~~e~~~~~I~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l~ 237 (439)
T PLN02710 173 RACYTAISVASLLNILDD----ELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVD 237 (439)
T ss_pred CCcHHHHHHHHHhCcCch----hhHHHHHHHHHHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCcc
Confidence 999999999999987432 45889999999864 666555 22334466666553
No 42
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=7.4e-07 Score=85.43 Aligned_cols=106 Identities=21% Similarity=0.289 Sum_probs=82.9
Q ss_pred HHHHHHHHhcCCCCCcccCCCCCccccHHH--HHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCccccc
Q 044313 34 RAVNIFSALQSSHGHWPADNSGPLFFNTPM--VICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTMFG 111 (344)
Q Consensus 34 ra~~~L~~~Q~~DG~W~g~~~~~~~~~a~~--v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~g~s~i~~ 111 (344)
+..+|+...|++|||+.++.+|.+-..--| +-.+.++|. ++.+..+.+++||.+.||=|||+|..++.++.--.
T Consensus 130 ~l~~fi~~lk~pdGsF~~~~~gevDtr~~Y~al~ilsllg~----~~~~~~e~~vdyl~kCqnyeGGFg~~p~aEaHag~ 205 (342)
T COG5029 130 SLASFISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGD----LDKELFEGAVDYLKKCQNYEGGFGLCPYAEAHAGY 205 (342)
T ss_pred HHHHHHHhccCCCCceecccCCcchHHHHHHHHHHHHHHhh----cchhhhHHHHHHHHHhhccCCcccCCCchhhccch
Confidence 578999999999999999887664332212 223556674 34677899999999999999999999999888888
Q ss_pred hHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCC
Q 044313 112 TVFNYICMRLLGEGPDGGENSGCTRARKWILDRGG 146 (344)
Q Consensus 112 T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG 146 (344)
|..|..||+++|--..- ..+++-..||.+++=
T Consensus 206 tFcalaalalL~~Ld~l---s~~E~l~~Wl~~RQ~ 237 (342)
T COG5029 206 TFCALAALALLGKLDKL---SDVEKLIRWLAERQL 237 (342)
T ss_pred HHHHHHHHHHHhccccc---chHHHHHHHHHHccc
Confidence 99999999988754333 238899999988763
No 43
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=5.3e-06 Score=77.92 Aligned_cols=88 Identities=22% Similarity=0.314 Sum_probs=70.4
Q ss_pred HHHHHHHHhcCCCCCcccCCCCC--ccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCccccc
Q 044313 34 RAVNIFSALQSSHGHWPADNSGP--LFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTMFG 111 (344)
Q Consensus 34 ra~~~L~~~Q~~DG~W~g~~~~~--~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~g~s~i~~ 111 (344)
+-..|+..+|++||++.|+.-|- +-+.-..|.+++++|..+ ...++++++|+.+.-|-|||+|..++.+|.--+
T Consensus 118 ~v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~ld----~~nve~aVd~~~~CyN~DGGFG~~pGaESHagq 193 (329)
T KOG0366|consen 118 KVASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVACLALLGKLD----TINVEKAVDFVLSCYNFDGGFGCRPGAESHAGQ 193 (329)
T ss_pred HHHHHHHhhcCcCCcccCCcccccchhhhHHHHHHHHHHhhHH----HhhHHHHHHHHHhhcccCCCcCCCCCcccccce
Confidence 46789999999999999985443 444555677899999765 356899999999999999999999998876555
Q ss_pred hHHHHHHHHHcCCC
Q 044313 112 TVFNYICMRLLGEG 125 (344)
Q Consensus 112 T~~ay~AL~l~G~~ 125 (344)
--.+.-||+++|.-
T Consensus 194 ifcCvgaLai~~~L 207 (329)
T KOG0366|consen 194 IFCCVGALAITGKL 207 (329)
T ss_pred ehhhHHHHHHccch
Confidence 55566688888764
No 44
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=98.26 E-value=1.9e-06 Score=80.94 Aligned_cols=107 Identities=13% Similarity=0.202 Sum_probs=80.3
Q ss_pred HHHHHHHHhcCCCCCccc---CCCCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccccC------
Q 044313 34 RAVNIFSALQSSHGHWPA---DNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVE------ 104 (344)
Q Consensus 34 ra~~~L~~~Q~~DG~W~g---~~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~------ 104 (344)
+|.+-+++-|++||+|.. +..+++++||..+-.+...... ..+++..++++++||.++|++||+|.....
T Consensus 1 ~GYqr~L~y~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~-i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~ 79 (246)
T PF07678_consen 1 QGYQRQLSYRRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKY-IFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREM 79 (246)
T ss_dssp HHHHHHHTTB-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTT-S-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGG
T ss_pred CchHHHhcCCCCCCCeeccccCCcccHHHHHHHHHHHHHHHHh-hcCCHHHHHHHHHHHHHhhcCCCccccCCCcccccc
Confidence 356678889999999964 4677889999877666666543 467788899999999999999999965211
Q ss_pred -C--CccccchHHHHHHHHHcCC------CCCCCCchHHHHHHHHHHHc
Q 044313 105 -G--HSTMFGTVFNYICMRLLGE------GPDGGENSGCTRARKWILDR 144 (344)
Q Consensus 105 -g--~s~i~~T~~ay~AL~l~G~------~~~~~~~p~m~rAr~~Il~~ 144 (344)
| .+++.-|+.+.+||.-.|. +... ..+.||.+||.++
T Consensus 80 ~g~~~~~~~lTA~VliAL~e~~~~~~~~~~~~~---~~i~kA~~~L~~~ 125 (246)
T PF07678_consen 80 QGGVEDDIALTAYVLIALLEAGSLCDSEKPEYE---NAINKALNYLERH 125 (246)
T ss_dssp SGGGTHHHHHHHHHHHHHHHCHCCHTTTHHCHH---HHHHHHHHHHHHH
T ss_pred CCCCCCCeeehHHHHHHHHhhhhhccccchhhH---HHHHHHHHHHHHh
Confidence 1 3468889999999998872 2223 7899999999887
No 45
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=2.3e-05 Score=74.75 Aligned_cols=107 Identities=24% Similarity=0.369 Sum_probs=77.7
Q ss_pred HHHHHHHhcCCCCCcccCCCCC---ccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCccccc
Q 044313 35 AVNIFSALQSSHGHWPADNSGP---LFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTMFG 111 (344)
Q Consensus 35 a~~~L~~~Q~~DG~W~g~~~~~---~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~g~s~i~~ 111 (344)
..+++...|++|||+.....|+ +-.---++.-+|+++... . -..++++.||++.|+=|||.|.+++++|.--+
T Consensus 130 il~~v~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ymLd~~s-~---iD~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~ 205 (347)
T KOG0367|consen 130 ILRFVSACQRPDGSFVSINVGSESDMRFVYCAVAICYMLDFWS-G---IDKEKLIGYIRSSQRYDGGFGQHPGGESHGGA 205 (347)
T ss_pred HHHHHHHhcCCCCceeecCCCCchhhHHHHHHHHHHHHhcccc-c---cCHHHHHHHHHHhhccccccccCCCCCCCcch
Confidence 5678899999999998654333 211111233477776321 1 23589999999999999999999999999999
Q ss_pred hHHHHHHHHHcCCC--CCCCCchHHHHHHHHHHHcC
Q 044313 112 TVFNYICMRLLGEG--PDGGENSGCTRARKWILDRG 145 (344)
Q Consensus 112 T~~ay~AL~l~G~~--~~~~~~p~m~rAr~~Il~~G 145 (344)
|..|..+|.++|.- ..-+.+..+.|-.+|++.++
T Consensus 206 TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli~RQ 241 (347)
T KOG0367|consen 206 TFCALASLALMGKLIPEELSNTSKVERLIRWLIQRQ 241 (347)
T ss_pred hHHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHHh
Confidence 99999999999864 11111234889999987654
No 46
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=97.85 E-value=0.00014 Score=69.85 Aligned_cols=117 Identities=15% Similarity=0.207 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccC------CCCCc-cccHHHHHHHHHh-----cCCC-CCCC-------HHHHHHH
Q 044313 26 EIATTALRRAVNIFSALQSSHGHWPAD------NSGPL-FFNTPMVICLYIT-----GHLN-IIFS-------TEHRKEM 85 (344)
Q Consensus 26 ~~v~~ai~ra~~~L~~~Q~~DG~W~g~------~~~~~-~~~a~~v~~l~~l-----g~~~-~~~~-------~~~~~~~ 85 (344)
+...+|+.||++||++.|.++|.|+.- |..-+ |-+-.++-.+.+| +..+ ...+ ...++|+
T Consensus 63 ~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rg 142 (290)
T TIGR02474 63 AKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKG 142 (290)
T ss_pred hhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHH
Confidence 468899999999999999999999852 22222 2233333223332 1110 0111 3458999
Q ss_pred HHHHHhhccCCC----CcccccC------------CCccccchHHHHHHHHHcCCCCCCCCch----HHHHHHHHHHHcC
Q 044313 86 LRYICNHQNEDG----GWGLHVE------------GHSTMFGTVFNYICMRLLGEGPDGGENS----GCTRARKWILDRG 145 (344)
Q Consensus 86 ~~~L~~~Q~~DG----GWg~~~~------------g~s~i~~T~~ay~AL~l~G~~~~~~~~p----~m~rAr~~Il~~G 145 (344)
++||+..|.++| +|+.-++ .+..++++--+=+...|+..+.-+ + ++..|++|+.++-
T Consensus 143 id~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps---~~i~~ai~~A~~W~~~~~ 219 (290)
T TIGR02474 143 IECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPNPS---AEIKEAIRAGVAWFDTSR 219 (290)
T ss_pred HHHHHHhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCCCC---HHHHHHHHHHHHHHHHCC
Confidence 999999999887 5554222 122333332233333345444222 3 4667889998865
No 47
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=97.78 E-value=4.5e-05 Score=71.82 Aligned_cols=65 Identities=14% Similarity=0.185 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhhccCCCCcccccCC-CccccchHHHHHHHHHcCC--CCCCCCchHHHHHHHHHHHcCCC
Q 044313 80 EHRKEMLRYICNHQNEDGGWGLHVEG-HSTMFGTVFNYICMRLLGE--GPDGGENSGCTRARKWILDRGGA 147 (344)
Q Consensus 80 ~~~~~~~~~L~~~Q~~DGGWg~~~~g-~s~i~~T~~ay~AL~l~G~--~~~~~~~p~m~rAr~~Il~~GG~ 147 (344)
+.+++++++|.+.|++|||||.+.+. .+++..|+.+..+|..++. ..++ +.+.||.+||.++...
T Consensus 49 ~~i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~---~~i~ra~~~L~~~q~~ 116 (282)
T cd02891 49 EYIRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDE---NVLARALGWLVPQQKE 116 (282)
T ss_pred HHHHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHhccCC
Confidence 56999999999999999999998876 8999999999999976532 3333 7899999999987543
No 48
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00014 Score=70.72 Aligned_cols=118 Identities=20% Similarity=0.354 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccCCCCCccccHH--HHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCC
Q 044313 29 TTALRRAVNIFSALQSSHGHWPADNSGPLFFNTP--MVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGH 106 (344)
Q Consensus 29 ~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~~a~--~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~g~ 106 (344)
++.++++++||...|.+.|.+.|--+--.-+.++ .|.++-++|..+ ..+.=.++++.+||.+..++|||+.+|.+|+
T Consensus 119 d~v~~~~i~fL~~c~~PeGGfgGGPGQl~HLA~TYAAVnaL~~~~~e~-A~~~InR~~l~~fL~slK~~dGgFrmh~~GE 197 (423)
T KOG0365|consen 119 DDVKENAIDFLFTCQGPEGGFGGGPGQLPHLAPTYAAVNALCLCGSED-AYSSINREKLYQFLFSLKDPDGGFRMHVEGE 197 (423)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCccchhhhHHHHHHHHHHhcCcHH-HHHHhhHHHHHHHHHHhcCCCCCeEeecCCc
Confidence 3567899999999999999987754433333333 456777777644 2222348899999999999999999999999
Q ss_pred ccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHc----CCCCCcc
Q 044313 107 STMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDR----GGATGIP 151 (344)
Q Consensus 107 s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~----GG~~~~~ 151 (344)
.++-+.-.|...-.++|+..| +--+--.+||.+. ||..++|
T Consensus 198 ~DvRs~YcA~svasllni~~d----eL~eG~~~wi~~CQtyEGG~GG~P 242 (423)
T KOG0365|consen 198 VDVRSAYCALSVASLLNIPMD----ELFEGTLDWIASCQTYEGGFGGEP 242 (423)
T ss_pred chHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHhcccccCCcCCCc
Confidence 886654444444467888654 5677788999985 5666666
No 49
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=97.63 E-value=0.00023 Score=68.50 Aligned_cols=70 Identities=14% Similarity=0.210 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCcccccCCCccccc--------hHHHHHHHHHcCC--CC----CC----CCchHHHHH
Q 044313 76 IFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTMFG--------TVFNYICMRLLGE--GP----DG----GENSGCTRA 137 (344)
Q Consensus 76 ~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~g~s~i~~--------T~~ay~AL~l~G~--~~----~~----~~~p~m~rA 137 (344)
....+.+.++++||++.|++||||..+....+.... ++-++..|+.+.. .. ++ ...+++.||
T Consensus 63 ~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rg 142 (290)
T TIGR02474 63 AKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKG 142 (290)
T ss_pred hhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHH
Confidence 344677999999999999999999987653333333 5666666654411 10 00 001689999
Q ss_pred HHHHHHcC
Q 044313 138 RKWILDRG 145 (344)
Q Consensus 138 r~~Il~~G 145 (344)
.+||++.+
T Consensus 143 id~ILktQ 150 (290)
T TIGR02474 143 IECILKTQ 150 (290)
T ss_pred HHHHHHhh
Confidence 99999866
No 50
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=97.62 E-value=9.4e-05 Score=76.03 Aligned_cols=198 Identities=15% Similarity=0.056 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHhc------------CCCCCcccCCCCCccc----cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhc
Q 044313 30 TALRRAVNIFSALQ------------SSHGHWPADNSGPLFF----NTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQ 93 (344)
Q Consensus 30 ~ai~ra~~~L~~~Q------------~~DG~W~g~~~~~~~~----~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q 93 (344)
.|+.++..||...| ..-|.|..+..+.... |+..+.+++..+. .+..++++.++...|
T Consensus 221 ~aiaka~~~L~~kq~~~~~~~~~~~~~~~g~W~f~~~~~~ypd~d~T~~~~~al~~~~~------~~~~~~~l~~V~~~q 294 (517)
T COG1657 221 PAIAKALMFLLDKQVLKYADWAVKRKFSPGGWGFSNINTGYPDADDTAGVVRALIGVQS------LPNFELGLDWVLYMQ 294 (517)
T ss_pred HhHHhhhhhhHHHHHHHhhccccccccCCCccceeecccCCCCchhhhHHHHHHHhhcc------hhhHHhhhhHhhhcc
Confidence 56666666666655 3456777665433322 3444555554442 356777999999999
Q ss_pred cCCCCcccccCCCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhCCcCCC--CCCC
Q 044313 94 NEDGGWGLHVEGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGATGIPSWGKTWLSILGVYDWS--GCNP 171 (344)
Q Consensus 94 ~~DGGWg~~~~g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG~~~~~~~tk~~LAl~G~~~W~--~~~~ 171 (344)
|.+|||..+.+-.-+-.- +.+..+...+..-++...+...++++|+-++.|.+. +.|.
T Consensus 295 ~~~g~~a~~e~~~~~a~~--------------------~~L~~~~~~~~~~~s~adct~~~~~~l~a~~~yl~~~~~~~i 354 (517)
T COG1657 295 NKLGGLAVYEDRNLHAWL--------------------RLLPPAEVKAMVDPSTADCTHRVVLALAALNAYLEAYDGQPI 354 (517)
T ss_pred cccCceeeeccccccHHH--------------------hhCCHhhccccccCCcccCCCccHHHHhhhhhccccccCCcc
Confidence 999999755442211111 112222233445566777788899999999999995 5777
Q ss_pred CCCccccCCCCCCCCcCCcchhcchhhhhhhhhhcCcccccCC---chhhhhhhhhccCCCCCCchhhhcccccccCCCC
Q 044313 172 MPPEFWKLPHFLPISPGKLLCYCRLTYMPMSYFYGKRFVGPIT---PLVLQLREEIYIQPYDEINWSKLRHLCAKEDLFF 248 (344)
Q Consensus 172 lP~El~llP~~~P~~~~~~~~~~R~~~vPm~il~~~r~~~~~~---~~~~~l~~EL~~~p~~~~~w~~~r~~~~~~d~~~ 248 (344)
-++.-|||+.+.|...+..+++.+-+|.||..+.+.+..++.. +.+..++.+|...-.+...|..++..++..+++.
T Consensus 355 ~~a~e~LL~~Q~~~GsW~g~w~v~~iY~~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~ 434 (517)
T COG1657 355 ERALEWLLSDQEPDGSWYGRWGVCYIYGTSGALSALALVGETDENEVLVRKLISWLVSKQMPDGGWGEAKEAISDPVYTG 434 (517)
T ss_pred cHHHhhhhhhccccCceeeEEEEEEEEehhhhhhhhhccCccccchHHHHHHHHHhhhccccCCCccccccccccccccc
Confidence 7888999999999999999999999999999999999887755 4566777888877777788999999988877776
Q ss_pred Cchhh
Q 044313 249 PHTTV 253 (344)
Q Consensus 249 p~~~~ 253 (344)
+++.+
T Consensus 435 t~~sl 439 (517)
T COG1657 435 TESSL 439 (517)
T ss_pred ccchh
Confidence 65443
No 51
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0058 Score=58.72 Aligned_cols=134 Identities=19% Similarity=0.331 Sum_probs=84.8
Q ss_pred HHHHHHHHHhcCCCCCcccCCCCCccccHH--HHHHHHHhcCC--CCCCCHHHHHHHHHHHHhhccCCCCcccccCCCcc
Q 044313 33 RRAVNIFSALQSSHGHWPADNSGPLFFNTP--MVICLYITGHL--NIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHST 108 (344)
Q Consensus 33 ~ra~~~L~~~Q~~DG~W~g~~~~~~~~~a~--~v~~l~~lg~~--~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~g~s~ 108 (344)
.+++.|+.+.|+=||.+....++-.-..++ .+..++++|+. +...+...++++++|+..+|..+||+ .|-+.-
T Consensus 177 ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~sgGf---qGR~NK 253 (347)
T KOG0367|consen 177 EKLIGYIRSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEELSNTSKVERLIRWLIQRQVSSGGF---QGRTNK 253 (347)
T ss_pred HHHHHHHHHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhccCCc---CCCCCC
Confidence 478899999999999997544332222222 23456666654 21222233899999999999999997 444444
Q ss_pred ccchHHHHH---HHHHcCCCCCCCCchHHHHHHHHHHHc-----CCCCCcc---------hHHHHHHHHhCCcCCCCCCC
Q 044313 109 MFGTVFNYI---CMRLLGEGPDGGENSGCTRARKWILDR-----GGATGIP---------SWGKTWLSILGVYDWSGCNP 171 (344)
Q Consensus 109 i~~T~~ay~---AL~l~G~~~~~~~~p~m~rAr~~Il~~-----GG~~~~~---------~~tk~~LAl~G~~~W~~~~~ 171 (344)
..-|..|++ .|++++..+-- .-++-|+||++. ||-.+-| -+|=.-||++ +=.++++
T Consensus 254 p~DTCYaFWigasLklL~~~~~~----d~~~lr~fll~~Q~~~iGGFsK~P~~~pD~~HsylG~~alal~---ee~~~~~ 326 (347)
T KOG0367|consen 254 PVDTCYAFWIGASLKLLDADWLI----DKQVLRKFLLSTQDKLIGGFSKWPEEDPDLLHSYLGLAALALL---EEKGLSP 326 (347)
T ss_pred CchhHHHHHHHHHHHHccchHhh----hHHHHHHHHHHhhhhhcCcccCCCccCchHHHHHHHHHHHHHh---cCCCCCC
Confidence 555666655 57888655433 245778999874 7888887 2233334443 4456666
Q ss_pred CCCcc
Q 044313 172 MPPEF 176 (344)
Q Consensus 172 lP~El 176 (344)
+-|++
T Consensus 327 v~p~l 331 (347)
T KOG0367|consen 327 VCPSL 331 (347)
T ss_pred CCccc
Confidence 65544
No 52
>PLN02592 ent-copalyl diphosphate synthase
Probab=96.79 E-value=0.0014 Score=71.05 Aligned_cols=83 Identities=19% Similarity=0.285 Sum_probs=57.8
Q ss_pred cCCCCCccccHHHHHHHHHh-cCCCCCCCHHHHHHHHHHHHhhccCCCCcccccC--CCccccchHHHHHHHHHcCCCCC
Q 044313 51 ADNSGPLFFNTPMVICLYIT-GHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVE--GHSTMFGTVFNYICMRLLGEGPD 127 (344)
Q Consensus 51 g~~~~~~~~~a~~v~~l~~l-g~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~--g~s~i~~T~~ay~AL~l~G~~~~ 127 (344)
|+...+++=||. |.+.... |.. .+.--+.++||+++|.+|||||.... ..--+..|.-|.+||+--++.+
T Consensus 91 g~~S~S~YDTAW-VAmVp~~~g~~-----~p~FP~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~- 163 (800)
T PLN02592 91 GEISISAYDTAW-VALVEDINGSG-----TPQFPSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNLHP- 163 (800)
T ss_pred CCcCCcHHHhHH-HhhcccCCCCC-----CCCCHHHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhccH-
Confidence 455555555554 4443333 321 13456789999999999999997522 2245688999999999876653
Q ss_pred CCCchHHHHHHHHHHHc
Q 044313 128 GGENSGCTRARKWILDR 144 (344)
Q Consensus 128 ~~~~p~m~rAr~~Il~~ 144 (344)
..+.||.+||.++
T Consensus 164 ----~~i~rGl~fi~~n 176 (800)
T PLN02592 164 ----EKCEKGMSFFREN 176 (800)
T ss_pred ----HHHHHHHHHHHHH
Confidence 4699999999984
No 53
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=96.43 E-value=0.0052 Score=57.64 Aligned_cols=100 Identities=15% Similarity=0.230 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccCC-----------CCCccccHHHHHHHHHhcCC---CCCCCHHHHHHHHHHHHhhcc
Q 044313 29 TTALRRAVNIFSALQSSHGHWPADN-----------SGPLFFNTPMVICLYITGHL---NIIFSTEHRKEMLRYICNHQN 94 (344)
Q Consensus 29 ~~ai~ra~~~L~~~Q~~DG~W~g~~-----------~~~~~~~a~~v~~l~~lg~~---~~~~~~~~~~~~~~~L~~~Q~ 94 (344)
...|.++++||.++|++||+|.... .....+||..+++|.-.+.. ..+.....++++++||.++
T Consensus 48 ~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~~~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~-- 125 (246)
T PF07678_consen 48 ENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGGVEDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERH-- 125 (246)
T ss_dssp HHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGGGTHHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhhcCCCccccCCCccccccCCCCCCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHh--
Confidence 4568999999999999999997532 12345677777777666521 0122256799999999877
Q ss_pred CCCCcccccCCCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHc
Q 044313 95 EDGGWGLHVEGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDR 144 (344)
Q Consensus 95 ~DGGWg~~~~g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~ 144 (344)
.....+.++.+.+-.||.++|. + +.-.++.+-|.+.
T Consensus 126 --------~~~~~~~Y~lAl~aYAL~la~~---~---~~~~~~~~~L~~~ 161 (246)
T PF07678_consen 126 --------LDNIQDPYTLALVAYALALAGD---S---PQASKLLNKLNSM 161 (246)
T ss_dssp --------HGCTSSHHHHHHHHHHHHHTTT---C---HHHHHHHHHHHCH
T ss_pred --------ccccCCHHHHHHHHHHHHhhcc---c---chHHHHHHHHHHh
Confidence 2234678888888899999982 2 5566666666553
No 54
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=96.32 E-value=0.0084 Score=41.26 Aligned_cols=40 Identities=13% Similarity=0.198 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCCCCcccCCCCCccccHH--HHHHHHHhc
Q 044313 32 LRRAVNIFSALQSSHGHWPADNSGPLFFNTP--MVICLYITG 71 (344)
Q Consensus 32 i~ra~~~L~~~Q~~DG~W~g~~~~~~~~~a~--~v~~l~~lg 71 (344)
++++++|+++.|++||+|.+..+.+..+..+ .+.+|.++|
T Consensus 3 ~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 3 VEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp HHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 5789999999999999999987776443332 234455543
No 55
>PLN02279 ent-kaur-16-ene synthase
Probab=96.29 E-value=0.0044 Score=67.34 Aligned_cols=82 Identities=17% Similarity=0.279 Sum_probs=56.8
Q ss_pred CCCCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCC----CccccchHHHHHHHHHcCCCCC
Q 044313 52 DNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEG----HSTMFGTVFNYICMRLLGEGPD 127 (344)
Q Consensus 52 ~~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~g----~s~i~~T~~ay~AL~l~G~~~~ 127 (344)
+...+.+=|| +|.+..-.+..+ .+.--+.++||+++|.+|||||..... .--+..|.-|.+||+--++.++
T Consensus 50 e~s~s~YDTA-Wvamv~~~~~~~----~p~Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~D~ll~TlAcvlAL~~w~~~~~ 124 (784)
T PLN02279 50 ELSVSSYDTA-WVAMVPSPNSQQ----APLFPECVKWLLENQLEDGSWGLPHDHPLLVKDALSSTLASILALKKWGVGEE 124 (784)
T ss_pred cCCCchhhhH-HHHhcccCCCCC----CCCChHHHHHHHhcCCCCCCCCCCCCCcchhHHhhHHHHHHHHHHHHHhcCcc
Confidence 4444444444 444333333222 234567899999999999999976332 2457889999999999888754
Q ss_pred CCCchHHHHHHHHHHH
Q 044313 128 GGENSGCTRARKWILD 143 (344)
Q Consensus 128 ~~~~p~m~rAr~~Il~ 143 (344)
.+.|+..||.+
T Consensus 125 -----~~~~gl~fi~~ 135 (784)
T PLN02279 125 -----QINKGLQFIEL 135 (784)
T ss_pred -----cchhhHHHHHH
Confidence 48999999987
No 56
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.016 Score=56.20 Aligned_cols=112 Identities=20% Similarity=0.294 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhcCCCCCcccCCCCCccc--cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCccc
Q 044313 32 LRRAVNIFSALQSSHGHWPADNSGPLFF--NTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTM 109 (344)
Q Consensus 32 i~ra~~~L~~~Q~~DG~W~g~~~~~~~~--~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~g~s~i 109 (344)
-++.+.++++.|.++|.+++..+...-+ |-..|..+.+++..+ ..+.-.+++..+||...|+|||++.---+ |.+
T Consensus 77 ~er~i~~v~~~~~~~G~f~~~~g~~~hL~sT~~Ai~~L~~~d~~~-~~~~idr~~l~~fi~~lk~pdGsF~~~~~--gev 153 (342)
T COG5029 77 KERKISFVLGCVGPSGGFGGGPGQDSHLASTVFAIQSLAMLDSLD-VLSRIDRDSLASFISGLKNPDGSFRSDLE--GEV 153 (342)
T ss_pred hhhhheeeeeeecCCCCcCCCCccchhHHHHHHHHHHHHHhcccc-ccchhhHHHHHHHHHhccCCCCceecccC--Ccc
Confidence 3567889999999999999876554433 333455566665433 23344577899999999999999853333 433
Q ss_pred cchHHHHHHH---HHcCCCCCCCCchHHHHHHHHHHHc----CCCCCcc
Q 044313 110 FGTVFNYICM---RLLGEGPDGGENSGCTRARKWILDR----GGATGIP 151 (344)
Q Consensus 110 ~~T~~ay~AL---~l~G~~~~~~~~p~m~rAr~~Il~~----GG~~~~~ 151 (344)
.+- .+|.|+ -++| +-+. +...-+.+||.+. ||...+|
T Consensus 154 Dtr-~~Y~al~ilsllg-~~~~---~~~e~~vdyl~kCqnyeGGFg~~p 197 (342)
T COG5029 154 DTR-FLYIALSILSLLG-DLDK---ELFEGAVDYLKKCQNYEGGFGLCP 197 (342)
T ss_pred hHH-HHHHHHHHHHHHh-hcch---hhhHHHHHHHHHhhccCCcccCCC
Confidence 322 266665 4567 3444 6788899999985 5655555
No 57
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.025 Score=55.49 Aligned_cols=113 Identities=17% Similarity=0.178 Sum_probs=79.9
Q ss_pred HHHHHHHH--HHHHHHHHhcCCCCCcccCCCCCccccHHHH--HHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCccc
Q 044313 26 EIATTALR--RAVNIFSALQSSHGHWPADNSGPLFFNTPMV--ICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGL 101 (344)
Q Consensus 26 ~~v~~ai~--ra~~~L~~~Q~~DG~W~g~~~~~~~~~a~~v--~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~ 101 (344)
++.-.+|+ +..+||.++.++||++.-..+|-+-.-+-|. -...++|... +|.-+...+||.+.|+=.||.|-
T Consensus 165 e~A~~~InR~~l~~fL~slK~~dGgFrmh~~GE~DvRs~YcA~svasllni~~----deL~eG~~~wi~~CQtyEGG~GG 240 (423)
T KOG0365|consen 165 EDAYSSINREKLYQFLFSLKDPDGGFRMHVEGEVDVRSAYCALSVASLLNIPM----DELFEGTLDWIASCQTYEGGFGG 240 (423)
T ss_pred HHHHHHhhHHHHHHHHHHhcCCCCCeEeecCCcchHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHhcccccCCcCC
Confidence 34555564 4789999999999999877666554433332 2345567643 57789999999999999999997
Q ss_pred ccCCCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCC
Q 044313 102 HVEGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGG 146 (344)
Q Consensus 102 ~~~g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG 146 (344)
.++.+..=-=|-.+..||.+++.- |. -.+++-.+|...+++
T Consensus 241 ~P~~EAHGGYTFCalAalalLn~~-d~---ln~~~Ll~W~~~RQm 281 (423)
T KOG0365|consen 241 EPGVEAHGGYTFCALAALALLNEM-DQ---LNLEKLLEWAVRRQM 281 (423)
T ss_pred CccccccCCeeHHHHHHHHHHhhh-hh---hCHHHHHHHHHHhhh
Confidence 776433333366777788777643 22 358888999887765
No 58
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.081 Score=50.30 Aligned_cols=140 Identities=19% Similarity=0.276 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhcCCCCCcccCCCCC----ccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCC
Q 044313 31 ALRRAVNIFSALQSSHGHWPADNSGP----LFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGH 106 (344)
Q Consensus 31 ai~ra~~~L~~~Q~~DG~W~g~~~~~----~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~g~ 106 (344)
-+++|++|+.+.-+-||.+...-++- ..+. -+-++.++|+.+ . -.+++...||..+|.+.||=.--++.-
T Consensus 163 nve~aVd~~~~CyN~DGGFG~~pGaESHagqifc--CvgaLai~~~L~-~---vd~d~lgwwlceRQ~~sGGLNGRpeKl 236 (329)
T KOG0366|consen 163 NVEKAVDFVLSCYNFDGGFGCRPGAESHAGQIFC--CVGALAITGKLH-L---VDRDLLGWWLCERQLPSGGLNGRPEKL 236 (329)
T ss_pred hHHHHHHHHHhhcccCCCcCCCCCcccccceehh--hHHHHHHccchh-h---cCHHHHHHHHHhccCCCCCCCCCcccC
Confidence 36789999999999999997543221 1111 123577888755 1 235788899999999999987677777
Q ss_pred ccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCC-----CCCcc-----hH-HHHHHHHhCCcCCCCCCCCCCc
Q 044313 107 STMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGG-----ATGIP-----SW-GKTWLSILGVYDWSGCNPMPPE 175 (344)
Q Consensus 107 s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG-----~~~~~-----~~-tk~~LAl~G~~~W~~~~~lP~E 175 (344)
.++-=+.|+|..|.+.|--.=- .-.+-.+||++.++ ..--| .| |-|=+|-+.+...+++-++-|
T Consensus 237 pDVCYSwWvlsSL~iigrl~wI----d~ekL~~FIl~cQd~~~GGfsDRpgd~~D~fHt~FgiAGLSLlg~~~l~~idP- 311 (329)
T KOG0366|consen 237 PDVCYSWWVLSSLAIIGRLHWI----DREKLTKFILACQDEETGGFSDRPGDEVDIFHTLFGIAGLSLLGYPGLKPIDP- 311 (329)
T ss_pred cchhhHHHHHhHHHHhhhhhhc----cHHHHHHHHHhcCCCCCCCcCCCCCCcccHHHHHHHHhhHhhhCCCCceecCC-
Confidence 7888899999999999864221 24566799998765 33222 22 445566666667788877777
Q ss_pred cccCCC
Q 044313 176 FWKLPH 181 (344)
Q Consensus 176 l~llP~ 181 (344)
...+|.
T Consensus 312 ~fcmp~ 317 (329)
T KOG0366|consen 312 IFCMPK 317 (329)
T ss_pred cccCcH
Confidence 444443
No 59
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=94.93 E-value=0.13 Score=49.69 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccCC------CCCcccc-HHHH---HHHHHh--cCCCC-CCC-------HHHHHHH
Q 044313 26 EIATTALRRAVNIFSALQSSHGHWPADN------SGPLFFN-TPMV---ICLYIT--GHLNI-IFS-------TEHRKEM 85 (344)
Q Consensus 26 ~~v~~ai~ra~~~L~~~Q~~DG~W~g~~------~~~~~~~-a~~v---~~l~~l--g~~~~-~~~-------~~~~~~~ 85 (344)
++..+|+.||++||++.|-++|.|+--| ..-++++ --++ .+|... +..+. .++ .+.++|+
T Consensus 58 ~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~~~~~~v~~~~~~r~~~A~~kg 137 (289)
T PF09492_consen 58 PRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGKGDFAFVDESLRARARAAVDKG 137 (289)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-TTSTTS-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHH
Confidence 5788999999999999999999998643 2223332 2232 223322 32221 122 2458899
Q ss_pred HHHHHhhcc----CCCCcccccC------------CCccccchHHHHHHHHHcCCCCCCCCch----HHHHHHHHHHH
Q 044313 86 LRYICNHQN----EDGGWGLHVE------------GHSTMFGTVFNYICMRLLGEGPDGGENS----GCTRARKWILD 143 (344)
Q Consensus 86 ~~~L~~~Q~----~DGGWg~~~~------------g~s~i~~T~~ay~AL~l~G~~~~~~~~p----~m~rAr~~Il~ 143 (344)
+++|+..|- +=-+|+.-++ .+..++++--+=+...|+..+.-. + ++..|.+|+.+
T Consensus 138 i~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps---~~v~~aI~~AvaWl~~ 212 (289)
T PF09492_consen 138 IDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNPS---PEVLAAIEAAVAWLES 212 (289)
T ss_dssp HHHHHHHS-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS-----HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhcCCCCC---HHHHHHHHHHHHHHHh
Confidence 999999998 3468985322 133455444444455566666333 4 35567788875
No 60
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=93.88 E-value=0.13 Score=47.77 Aligned_cols=84 Identities=20% Similarity=0.348 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhhccCCCCcccccCCCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCCCCCc-chHHHHHHH
Q 044313 81 HRKEMLRYICNHQNEDGGWGLHVEGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGATGI-PSWGKTWLS 159 (344)
Q Consensus 81 ~~~~~~~~L~~~Q~~DGGWg~~~~g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG~~~~-~~~tk~~LA 159 (344)
..++.+.||...|++|||.-.+..-++++.-|--|.-.+-++|.++ |..++..+||.++=--+.+ =.++=-.|+
T Consensus 7 ~l~rvi~fi~~RrhedGGy~f~~~Lpdti~~TyYAi~i~s~lg~ev-----Pr~EktiefL~d~~qt~~~~~a~~~~~l~ 81 (274)
T COG1689 7 NLNRVIEFIEKRRHEDGGYCFVSQLPDTINDTYYAIKIYSLLGHEV-----PRKEKTIEFLYDQMQTAGVGVAMAIEFLR 81 (274)
T ss_pred hHHHHHHHHHHhhcCCCCeEEeccCcchhhhhhhhhhhhhhcCCcC-----chHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4789999999999999999888777777887777777777777754 8899999999983111111 134556788
Q ss_pred HhCCcCCCCC
Q 044313 160 ILGVYDWSGC 169 (344)
Q Consensus 160 l~G~~~W~~~ 169 (344)
++|.-+-..-
T Consensus 82 ~lg~~d~~r~ 91 (274)
T COG1689 82 ILGAKDLARN 91 (274)
T ss_pred Hhcccccchh
Confidence 8888776654
No 61
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=93.77 E-value=0.29 Score=48.07 Aligned_cols=98 Identities=15% Similarity=0.187 Sum_probs=60.2
Q ss_pred cccHHHHHHHHHhcCCCCC--CC----HHHHHHHHHHHHhhccCCCCcccccCCCccccchHHHHHHHHHcCCCCCCCCc
Q 044313 58 FFNTPMVICLYITGHLNII--FS----TEHRKEMLRYICNHQNEDGGWGLHVEGHSTMFGTVFNYICMRLLGEGPDGGEN 131 (344)
Q Consensus 58 ~~~a~~v~~l~~lg~~~~~--~~----~~~~~~~~~~L~~~Q~~DGGWg~~~~g~s~i~~T~~ay~AL~l~G~~~~~~~~ 131 (344)
=+.|..++++.-+...... -. ...++++.+.|.+.|.+||.. ||++.|.+|.-||..++..+... +
T Consensus 187 DT~AmA~LALtCv~~~~~~~~~~~~~i~~~i~~~~~kIl~~q~~~G~~-------GNiySTglAmQAL~~~~~~~~~~-~ 258 (326)
T PF01122_consen 187 DTGAMAVLALTCVKNSNPNGPELRRRIQQAIRSLVEKILSQQKPNGLF-------GNIYSTGLAMQALSVSPSPPSES-E 258 (326)
T ss_dssp HHHHHHHHHHHHHHTTTSTTGGGHHHHHHHHHHHHHHHHHTB-TTS-B-------SSTTTHHHHHHHHTT-SS-SSHH-H
T ss_pred cHHHHHHHHHHHHhccCcCcHhHHHHHHHHHHHHHHHHHHhcCCCCcc-------cchhhHHHHHHHHhcCCCCCcch-h
Confidence 3455566666666432111 00 124777888889999999997 59999999999999998865421 1
Q ss_pred hHHHHHHHHHHHc--CCCCCcc-hHHHHHHHHhCC
Q 044313 132 SGCTRARKWILDR--GGATGIP-SWGKTWLSILGV 163 (344)
Q Consensus 132 p~m~rAr~~Il~~--GG~~~~~-~~tk~~LAl~G~ 163 (344)
-.+.++.++|+.. .|.=..| ....+.-|+.|-
T Consensus 259 w~C~k~~~~ll~~i~~G~F~nP~a~aQiLPaL~gK 293 (326)
T PF01122_consen 259 WNCQKALDALLKEISQGAFQNPMAIAQILPALNGK 293 (326)
T ss_dssp HHHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHcCC
Confidence 4699999999875 4555555 333344455443
No 62
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=92.81 E-value=0.18 Score=48.73 Aligned_cols=67 Identities=21% Similarity=0.196 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhhccCCCCcccccC-CCc-----c--ccchHHHHHHHHHc--CCCCC---------CCCchHHHHHHH
Q 044313 79 TEHRKEMLRYICNHQNEDGGWGLHVE-GHS-----T--MFGTVFNYICMRLL--GEGPD---------GGENSGCTRARK 139 (344)
Q Consensus 79 ~~~~~~~~~~L~~~Q~~DGGWg~~~~-g~s-----~--i~~T~~ay~AL~l~--G~~~~---------~~~~p~m~rAr~ 139 (344)
.+...++++||++.|.++|||..++- ..+ + =.+.+-++.-|+-+ |..+. .. ..++.||.+
T Consensus 61 ~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~~~~~~v~~~~~~r~-~~A~~kgi~ 139 (289)
T PF09492_consen 61 REAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGKGDFAFVDESLRARA-RAAVDKGID 139 (289)
T ss_dssp HHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-TTSTTS-HHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhcCCccccCHHHHHHH-HHHHHHHHH
Confidence 35689999999999999999987643 111 1 12233333344433 33322 00 146888999
Q ss_pred HHHHcCC
Q 044313 140 WILDRGG 146 (344)
Q Consensus 140 ~Il~~GG 146 (344)
+|++.+-
T Consensus 140 ciL~tQi 146 (289)
T PF09492_consen 140 CILKTQI 146 (289)
T ss_dssp HHHHHS-
T ss_pred HHHHHHc
Confidence 9998664
No 63
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=89.56 E-value=1 Score=41.99 Aligned_cols=98 Identities=16% Similarity=0.281 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhcCCCCCcccCCCCCccc-cHHHHH-HHHHhcCCCCCCCHHHHHHHHHHHHhh-ccCCCCcccccCCCcc
Q 044313 32 LRRAVNIFSALQSSHGHWPADNSGPLFF-NTPMVI-CLYITGHLNIIFSTEHRKEMLRYICNH-QNEDGGWGLHVEGHST 108 (344)
Q Consensus 32 i~ra~~~L~~~Q~~DG~W~g~~~~~~~~-~a~~v~-~l~~lg~~~~~~~~~~~~~~~~~L~~~-Q~~DGGWg~~~~g~s~ 108 (344)
+++-++|+...|++||..+..-.-+-++ +..|.+ .+.++|.. .+..++.++||.++ |.+-+|
T Consensus 8 l~rvi~fi~~RrhedGGy~f~~~Lpdti~~TyYAi~i~s~lg~e-----vPr~EktiefL~d~~qt~~~~---------- 72 (274)
T COG1689 8 LNRVIEFIEKRRHEDGGYCFVSQLPDTINDTYYAIKIYSLLGHE-----VPRKEKTIEFLYDQMQTAGVG---------- 72 (274)
T ss_pred HHHHHHHHHHhhcCCCCeEEeccCcchhhhhhhhhhhhhhcCCc-----CchHHHHHHHHHHHHHHhhhH----------
Confidence 5788999999999999998764333232 233333 45566752 35789999999984 444444
Q ss_pred ccchHHHHHHHHHcCCCCCCCCchH--------HHHHHHHHHHcCCCCC
Q 044313 109 MFGTVFNYICMRLLGEGPDGGENSG--------CTRARKWILDRGGATG 149 (344)
Q Consensus 109 i~~T~~ay~AL~l~G~~~~~~~~p~--------m~rAr~~Il~~GG~~~ 149 (344)
-+.+.-+|+++|...-+ -.. ..--++|....||...
T Consensus 73 ---~a~~~~~l~~lg~~d~~--r~~~~l~~~~~~~~e~Kf~~~lggs~~ 116 (274)
T COG1689 73 ---VAMAIEFLRILGAKDLA--RNKMLLLFLKYNPLEEKFAVGLGGSEE 116 (274)
T ss_pred ---HHHHHHHHHHhcccccc--hhhHHHHHhhcCchhHHHhhhcCceee
Confidence 35566778888875322 011 2234567777777766
No 64
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=87.48 E-value=2.5 Score=41.61 Aligned_cols=67 Identities=13% Similarity=0.139 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccccHHHHHHHHHhcCCCCCCCH--HHHHHHHHHHHhhccCCCCcc
Q 044313 25 PEIATTALRRAVNIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNIIFST--EHRKEMLRYICNHQNEDGGWG 100 (344)
Q Consensus 25 ~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~~a~~v~~l~~lg~~~~~~~~--~~~~~~~~~L~~~Q~~DGGWg 100 (344)
..++..+|++..+.+++.|.+||++. +.+.|+..+-+|...+. ...+ ....++.+.|+..+ +||.++
T Consensus 210 ~~~i~~~i~~~~~kIl~~q~~~G~~G-----NiySTglAmQAL~~~~~---~~~~~~w~C~k~~~~ll~~i-~~G~F~ 278 (326)
T PF01122_consen 210 RRRIQQAIRSLVEKILSQQKPNGLFG-----NIYSTGLAMQALSVSPS---PPSESEWNCQKALDALLKEI-SQGAFQ 278 (326)
T ss_dssp HHHHHHHHHHHHHHHHHTB-TTS-BS-----STTTHHHHHHHHTT-SS----SSHHHHHHHHHHHHHHHHH-TTTTT-
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCccc-----chhhHHHHHHHHhcCCC---CCcchhhHHHHHHHHHHHHh-hcCCCC
Confidence 46899999999999999999999985 55667766666666664 2223 34889999999864 699984
No 65
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=81.68 E-value=3.6 Score=47.98 Aligned_cols=76 Identities=14% Similarity=0.242 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCccc--C--CCCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCccc
Q 044313 26 EIATTALRRAVNIFSALQSSHGHWPA--D--NSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGL 101 (344)
Q Consensus 26 ~~v~~ai~ra~~~L~~~Q~~DG~W~g--~--~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~ 101 (344)
+....-++.|..-.+.-+++||++.. + ..+++.+++..+-.+...... ..+++..+.++..||.++|.+||.+-+
T Consensus 967 ~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~~-i~id~~~i~~a~~wl~~~Qk~~GsF~e 1045 (1436)
T KOG1366|consen 967 RKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKEY-IFIDPNVITQALNWLSQQQKENGSFKE 1045 (1436)
T ss_pred HHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHhhhccCc-eEecHHHHHHHHHHHHHhhccCceEec
Confidence 34666678888889999999999964 3 567777888655444444321 235677899999999999999999865
Q ss_pred c
Q 044313 102 H 102 (344)
Q Consensus 102 ~ 102 (344)
.
T Consensus 1046 ~ 1046 (1436)
T KOG1366|consen 1046 V 1046 (1436)
T ss_pred c
Confidence 4
No 66
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=78.40 E-value=11 Score=40.01 Aligned_cols=91 Identities=14% Similarity=0.157 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhcCCCCCcccCC--CCC-------ccc--cHHHHHHH--HHhcCCCCCCCH---HHHHHHHHHHHhhc
Q 044313 30 TALRRAVNIFSALQSSHGHWPADN--SGP-------LFF--NTPMVICL--YITGHLNIIFST---EHRKEMLRYICNHQ 93 (344)
Q Consensus 30 ~ai~ra~~~L~~~Q~~DG~W~g~~--~~~-------~~~--~a~~v~~l--~~lg~~~~~~~~---~~~~~~~~~L~~~Q 93 (344)
+..++.++||.+.|.+||+|.-.+ .|. .-+ ++..+.++ |..-..+..+.+ +.++++++|+.++.
T Consensus 314 ~~a~~~l~~l~~~q~~~G~~~~~~~~dG~~~~~~~~~Q~D~~g~~l~al~~y~~~t~d~~~~~~~~~~v~~a~~fl~~~~ 393 (616)
T TIGR01577 314 DRVDRFFRWAMQTQSRDGSWQQRYYLNGRLAPLQWGLQIDETGSILWAMDQHYRLTNDRAFLEEIWESVQKAAQYLILFI 393 (616)
T ss_pred HHHHHHHHHHHHhhCcCCCcceEEecCCCCCCCCCCccccchhHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 456788999999999999984321 111 101 12223233 222111111111 45899999999965
Q ss_pred c------CCCCcccccCCCccccchHHHHHHHHHc
Q 044313 94 N------EDGGWGLHVEGHSTMFGTVFNYICMRLL 122 (344)
Q Consensus 94 ~------~DGGWg~~~~g~s~i~~T~~ay~AL~l~ 122 (344)
. ..|-|.... |. .+++.+.+|.||+.+
T Consensus 394 ~~~l~~~~~~lWEer~-G~-~~~t~a~~~aAL~~a 426 (616)
T TIGR01577 394 DPETPLPCRDLWEERE-GV-FTYTASAVYGGLDAA 426 (616)
T ss_pred cCCCCCCCCccceecC-Cc-cCccHHHHHHHHHHH
Confidence 2 344575432 33 566788899999654
No 67
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=76.67 E-value=17 Score=38.70 Aligned_cols=112 Identities=16% Similarity=0.194 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHhcCCC-CCcccCCCC--------C---ccc-c-HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhh
Q 044313 27 IATTALRRAVNIFSALQSSH-GHWPADNSG--------P---LFF-N-TPMVICLYITGHLNIIFSTEHRKEMLRYICNH 92 (344)
Q Consensus 27 ~v~~ai~ra~~~L~~~Q~~D-G~W~g~~~~--------~---~~~-~-a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~ 92 (344)
++...+++.+--|+.++..+ |...+.... . +.. + +..++++-.+|. .+..++..+||.+.
T Consensus 253 ~~~~~~~~Sll~Lk~~~~~~~GaiiAs~s~~~~~~~~~~Y~y~W~RD~~~~a~Al~~~G~------~~~a~~~l~~l~~~ 326 (616)
T TIGR01577 253 KIYSLYRRSLAVLRLLTDGEYGSMIAAPEFDEDFVRCGGYAYCWGRDASYIATALDRAGY------HDRVDRFFRWAMQT 326 (616)
T ss_pred HHHHHHHHHHHHHHhccCCCCCcEEEcCCCCcccccCCCCceeccccHHHHHHHHHHCCC------HHHHHHHHHHHHHh
Confidence 45577888877788888766 764322110 1 121 2 233455666675 46789999999999
Q ss_pred ccCCCCccc--ccCC-------CccccchHHHHHHH----HHcCCCC---CCCCchHHHHHHHHHHHcCC
Q 044313 93 QNEDGGWGL--HVEG-------HSTMFGTVFNYICM----RLLGEGP---DGGENSGCTRARKWILDRGG 146 (344)
Q Consensus 93 Q~~DGGWg~--~~~g-------~s~i~~T~~ay~AL----~l~G~~~---~~~~~p~m~rAr~~Il~~GG 146 (344)
|.+||+|-. +++| .-++..|.....|+ +..|... +- -+.+++|.+|+.++.+
T Consensus 327 q~~~G~~~~~~~~dG~~~~~~~~~Q~D~~g~~l~al~~y~~~t~d~~~~~~~--~~~v~~a~~fl~~~~~ 394 (616)
T TIGR01577 327 QSRDGSWQQRYYLNGRLAPLQWGLQIDETGSILWAMDQHYRLTNDRAFLEEI--WESVQKAAQYLILFID 394 (616)
T ss_pred hCcCCCcceEEecCCCCCCCCCCccccchhHHHHHHHHHHHHHCCHHHHHHH--HHHHHHHHHHHHHhcc
Confidence 999999832 2222 12233344444444 3333211 11 0568999999998664
No 68
>PLN02592 ent-copalyl diphosphate synthase
Probab=76.34 E-value=10 Score=41.73 Aligned_cols=92 Identities=18% Similarity=0.171 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCC-CCCcccCCCCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccC-CCCcccccCCCcccc
Q 044313 33 RRAVNIFSALQSS-HGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNE-DGGWGLHVEGHSTMF 110 (344)
Q Consensus 33 ~ra~~~L~~~Q~~-DG~W~g~~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~-DGGWg~~~~g~s~i~ 110 (344)
+++.+||.+.++. +|.-++-|..+.+--..+|-.+.-+|..- .+ ++.|+++++++.+.=.+ +.||+- .+...++.
T Consensus 285 ~~cl~YL~~~~~k~~GgVP~vyP~d~fE~LwlVDtLqRLGIs~-hF-~~EI~~iLd~iy~~w~~~g~~~a~-~~~~~Dld 361 (800)
T PLN02592 285 ENCLEYLNKAVQRFNGGVPNVYPVDLFEHIWAVDRLQRLGISR-YF-EPEIKECIDYVHRYWTENGICWAR-NSHVHDID 361 (800)
T ss_pred hHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCcc-cc-HHHHHHHHHHHHHHHhhcCccccc-CCCcCCHH
Confidence 5677777776644 34444444444443344455677778642 33 56799999999873222 235631 11256899
Q ss_pred chHHHHHHHHHcCCCCC
Q 044313 111 GTVFNYICMRLLGEGPD 127 (344)
Q Consensus 111 ~T~~ay~AL~l~G~~~~ 127 (344)
.|+++.-+||..|++..
T Consensus 362 ~TALaFRLLRqhGy~VS 378 (800)
T PLN02592 362 DTAMGFRLLRLHGHQVS 378 (800)
T ss_pred HHHHHHHHHHHcCCCCC
Confidence 99999999999999764
No 69
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=75.97 E-value=15 Score=39.55 Aligned_cols=91 Identities=12% Similarity=0.208 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhcCCCCCcccCC--CCC-----ccc--cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhcc--CCCC
Q 044313 30 TALRRAVNIFSALQSSHGHWPADN--SGP-----LFF--NTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQN--EDGG 98 (344)
Q Consensus 30 ~ai~ra~~~L~~~Q~~DG~W~g~~--~~~-----~~~--~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~--~DGG 98 (344)
+..++..+||.+.|.+||+|.-.+ .|. .-+ ++..|.+++.+.+.+....-+.++++++||.++-. +-|=
T Consensus 314 ~~a~~~~~~l~~~~~~~G~~lq~y~vdG~~~~~~iQlD~~g~~i~~~~~l~~~~~~~~~~~vk~aadfl~~~~p~p~~d~ 393 (648)
T TIGR01535 314 DSALRSLDYLAKVQQDNGMFPQNSWVDGKPYWTGIQLDETAFPILLAYRLHRYDHAFYDKMLKPAADFIVKNGPKTGQER 393 (648)
T ss_pred HHHHHHHHHHHHHhccCCCcCceeccCCCCCCCCccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCCCCCCCc
Confidence 456789999999999999985321 111 122 23345555555332211123569999999999643 2455
Q ss_pred cccccCCCccccchHHHHHHHHHc
Q 044313 99 WGLHVEGHSTMFGTVFNYICMRLL 122 (344)
Q Consensus 99 Wg~~~~g~s~i~~T~~ay~AL~l~ 122 (344)
|-+. +.-..++.+.+|.||..+
T Consensus 394 WEer--~g~~~~T~a~v~aaL~~A 415 (648)
T TIGR01535 394 WEEI--GGYSPSTLAAEIAGLTAA 415 (648)
T ss_pred cccc--CCcCchhHHHHHHHHHHH
Confidence 5322 233457777777888543
No 70
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=72.79 E-value=7.4 Score=37.80 Aligned_cols=119 Identities=15% Similarity=0.048 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHhcC-CCCCcccCC-------CCC-c------cccHHHHHHHHHhcCCC--CCCCHHHHHHHHHH
Q 044313 26 EIATTALRRAVNIFSALQS-SHGHWPADN-------SGP-L------FFNTPMVICLYITGHLN--IIFSTEHRKEMLRY 88 (344)
Q Consensus 26 ~~v~~ai~ra~~~L~~~Q~-~DG~W~g~~-------~~~-~------~~~a~~v~~l~~lg~~~--~~~~~~~~~~~~~~ 88 (344)
+-++.|++....+...+.+ ++|-|...+ .++ + ....+++.++..+.... ...-.+..+++++.
T Consensus 144 ~~~~~a~~q~~~~~~~~~d~~tGl~~h~~~~~~~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~ 223 (336)
T PF07470_consen 144 KYLDEAVRQFRLTRKYLYDPETGLYYHGYTYQGYADWSDSFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADA 223 (336)
T ss_dssp HHHHHHHHHHHHHHHHHB-TTTSSBESEEETTSSSTTST--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCCceeeccCCCCCcCcccccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHH
Confidence 3467777888888877775 478774311 011 1 11222334455552210 00002346678888
Q ss_pred HHhhccCCCCcccccCC-----CccccchHHHHHHH-H--HcCCCCCCCCchHHHHHHHHHHHc
Q 044313 89 ICNHQNEDGGWGLHVEG-----HSTMFGTVFNYICM-R--LLGEGPDGGENSGCTRARKWILDR 144 (344)
Q Consensus 89 L~~~Q~~DGGWg~~~~g-----~s~i~~T~~ay~AL-~--l~G~~~~~~~~p~m~rAr~~Il~~ 144 (344)
|.+.|.+||.|....+. .-+.|+|+..-.|| + ..|...+..--+...||.+.|.++
T Consensus 224 l~~~q~~~G~w~~~~~~~~~~~~~etSatA~~a~~l~~gi~~g~~d~~~y~~~a~~a~~~l~~~ 287 (336)
T PF07470_consen 224 LARYQDEDGLWYQDLDDPDPGNYRETSATAMFAYGLLRGIRLGLLDPEEYRPAAEKALEALLSN 287 (336)
T ss_dssp HHTTSTTTSBEBSBTTTTTTTS-BEHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHC
T ss_pred HHhcCCCCCCcceecCCCCCCCcccHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhC
Confidence 89999999999765442 34788999877777 3 356652220014556666666665
No 71
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=63.90 E-value=18 Score=35.08 Aligned_cols=74 Identities=14% Similarity=0.211 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCc---cc--cHHHHHHHHH-----hcCCCCCCCHHHHHHHHHHHHhh-c
Q 044313 25 PEIATTALRRAVNIFSALQSSHGHWPADNSGPL---FF--NTPMVICLYI-----TGHLNIIFSTEHRKEMLRYICNH-Q 93 (344)
Q Consensus 25 ~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~---~~--~a~~v~~l~~-----lg~~~~~~~~~~~~~~~~~L~~~-Q 93 (344)
.+.+.+.+++..+++.+.|++||.|...+.-+- +. .++.+++.-+ .|..+.....+..+++.+.|.++ -
T Consensus 210 ~~~~~~~~~~~~~~l~~~q~~~G~w~~~~~~~~~~~~~etSatA~~a~~l~~gi~~g~~d~~~y~~~a~~a~~~l~~~~~ 289 (336)
T PF07470_consen 210 RDELLEIAKKLADALARYQDEDGLWYQDLDDPDPGNYRETSATAMFAYGLLRGIRLGLLDPEEYRPAAEKALEALLSNAI 289 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTTSBEBSBTTTTTTTS-BEHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHCEB
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcceecCCCCCCCcccHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhCcc
Confidence 356777788888999999999999976443222 33 2333433222 23322111124588899999999 7
Q ss_pred cCCCC
Q 044313 94 NEDGG 98 (344)
Q Consensus 94 ~~DGG 98 (344)
++||.
T Consensus 290 ~~dG~ 294 (336)
T PF07470_consen 290 DPDGK 294 (336)
T ss_dssp -TTSS
T ss_pred CCCCC
Confidence 77887
No 72
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=59.65 E-value=28 Score=30.37 Aligned_cols=46 Identities=13% Similarity=0.252 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhccCCCCcccccC-CCccccchHHHHHHHHHcCCCCCC
Q 044313 82 RKEMLRYICNHQNEDGGWGLHVE-GHSTMFGTVFNYICMRLLGEGPDG 128 (344)
Q Consensus 82 ~~~~~~~L~~~Q~~DGGWg~~~~-g~s~i~~T~~ay~AL~l~G~~~~~ 128 (344)
++++++|..++++. =+-..... |++...|+...+.||+.+|.....
T Consensus 2 ie~~I~w~~~r~~~-v~YSm~~R~G~~s~DCSs~V~~ALr~aG~~~~g 48 (145)
T PF05382_consen 2 IEKAINWMEARKGK-VTYSMDSRNGPDSYDCSSFVYQALRAAGFKIPG 48 (145)
T ss_pred HHHHHHHHHHhcCC-ceEhhhhcCCCCcCchHHHHHHHHHHcCCCCCC
Confidence 57899999988765 23333322 555559999999999999997543
No 73
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=56.99 E-value=23 Score=42.21 Aligned_cols=61 Identities=13% Similarity=0.180 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhhccCCCCcccccC-CCccccchHHHHHHHH---HcCCCCCCCCchHHHHHHHHHH
Q 044313 79 TEHRKEMLRYICNHQNEDGGWGLHVE-GHSTMFGTVFNYICMR---LLGEGPDGGENSGCTRARKWIL 142 (344)
Q Consensus 79 ~~~~~~~~~~L~~~Q~~DGGWg~~~~-g~s~i~~T~~ay~AL~---l~G~~~~~~~~p~m~rAr~~Il 142 (344)
...++.++.-|.+.|..||++|+..+ +.++..-|+.++-.|. ..|+.... .++.++.++++
T Consensus 1198 ~~~l~~a~~rL~~~Q~~~G~F~~W~~~~~~d~~ltaYa~~Fl~~A~e~g~~vp~---~~~~~~~~~~~ 1262 (1621)
T COG2373 1198 RARLQDAIGRLLSLQGSNGAFGLWGGNGSGDPWLTAYAVDFLLRAREQGYSVPS---DALNQMLERLL 1262 (1621)
T ss_pred HHHHHHHHHHHHhhhhcCCceeecCCCCCcchhhhHHHHHHHhhhhhcCcCCCH---HHHHHHHHHHH
Confidence 34689999999999999999999888 8899999999888774 44666655 78999855433
No 74
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=55.81 E-value=75 Score=38.05 Aligned_cols=98 Identities=17% Similarity=0.172 Sum_probs=63.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCcc---cCCCCCccccHHHHH-HHHHhcCCCCCCCHHHHHHHHH-HHHhhccCC
Q 044313 22 EITPEIATTALRRAVNIFSALQSSHGHWP---ADNSGPLFFNTPMVI-CLYITGHLNIIFSTEHRKEMLR-YICNHQNED 96 (344)
Q Consensus 22 ~~~~~~v~~ai~ra~~~L~~~Q~~DG~W~---g~~~~~~~~~a~~v~-~l~~lg~~~~~~~~~~~~~~~~-~L~~~Q~~D 96 (344)
......++..++.++.-|.++|..||++. +.-.++.++++..+- +++. .......+++..+++.+ ++...||+-
T Consensus 1191 ~~~~~~~~~~l~~a~~rL~~~Q~~~G~F~~W~~~~~~d~~ltaYa~~Fl~~A-~e~g~~vp~~~~~~~~~~~~~~l~n~~ 1269 (1621)
T COG2373 1191 GAADNDLRARLQDAIGRLLSLQGSNGAFGLWGGNGSGDPWLTAYAVDFLLRA-REQGYSVPSDALNQMLERLLEYLQNPG 1269 (1621)
T ss_pred cccchhHHHHHHHHHHHHHhhhhcCCceeecCCCCCcchhhhHHHHHHHhhh-hhcCcCCCHHHHHHHHHHHHHHHhCcC
Confidence 45667899999999999999999999863 345677888886653 2333 32224667788888854 566667654
Q ss_pred CCcccccCCCccc-cchHHHHHHHHHcCC
Q 044313 97 GGWGLHVEGHSTM-FGTVFNYICMRLLGE 124 (344)
Q Consensus 97 GGWg~~~~g~s~i-~~T~~ay~AL~l~G~ 124 (344)
+.++...++ -.+-.+|..+.++..
T Consensus 1270 ----~~~~~~~~l~~~~~~ay~L~~lA~~ 1294 (1621)
T COG2373 1270 ----LAYADEVELRRRALQAYALYVLARN 1294 (1621)
T ss_pred ----ccccchhhhhHHHHHHHHHHHHhhc
Confidence 222222333 445556666666543
No 75
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=54.65 E-value=37 Score=40.02 Aligned_cols=95 Identities=13% Similarity=0.215 Sum_probs=59.5
Q ss_pred cCCCCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-------HhhccCCCCcccccCCCccccchHHHHHHHHHcC
Q 044313 51 ADNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYI-------CNHQNEDGGWGLHVEGHSTMFGTVFNYICMRLLG 123 (344)
Q Consensus 51 g~~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L-------~~~Q~~DGGWg~~~~g~s~i~~T~~ay~AL~l~G 123 (344)
||-|-+++.-+.-|.+++.|...+ .++.+..++|.++| +..+++||+...+-+ .+.-..|.+.-+.||.+.
T Consensus 936 GcGEQnMi~faPni~v~~YL~~t~-q~~~~~k~ka~~~l~~GyqrqL~yk~~DgSySaFg~-~~~~~stWLtafvlr~f~ 1013 (1436)
T KOG1366|consen 936 GCGEQNMINFAPNIYVLKYLPKTN-QLTPELKRKALKFLEQGYQRQLTYKRADGSYSAFGS-SDRSGSTWLTAFVLRVFS 1013 (1436)
T ss_pred CcccceeecccchhhHHHHHhhhh-ccChhHHHHHHHHHHHHHHHHHhhhccCCChhhhcC-CCCcccHHHHHHHHHHhh
Confidence 455667776666666666664322 23345555555554 567889999987755 333344777778887664
Q ss_pred CCCC---CCCchHHHHHHHHHHHcCCCC
Q 044313 124 EGPD---GGENSGCTRARKWILDRGGAT 148 (344)
Q Consensus 124 ~~~~---~~~~p~m~rAr~~Il~~GG~~ 148 (344)
...+ -. .+.+.+|..||..++=..
T Consensus 1014 ~a~~~i~id-~~~i~~a~~wl~~~Qk~~ 1040 (1436)
T KOG1366|consen 1014 QAKEYIFID-PNVITQALNWLSQQQKEN 1040 (1436)
T ss_pred hccCceEec-HHHHHHHHHHHHHhhccC
Confidence 4321 11 168999999999875333
No 76
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=53.70 E-value=83 Score=34.06 Aligned_cols=110 Identities=16% Similarity=0.217 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHhcCCC--CCcccCCCCC------------c---cc-cH-HHHHHHHHhcCCCCCCCHHHHHHHHH
Q 044313 27 IATTALRRAVNIFSALQSSH--GHWPADNSGP------------L---FF-NT-PMVICLYITGHLNIIFSTEHRKEMLR 87 (344)
Q Consensus 27 ~v~~ai~ra~~~L~~~Q~~D--G~W~g~~~~~------------~---~~-~a-~~v~~l~~lg~~~~~~~~~~~~~~~~ 87 (344)
...+.+++.+--|+.++..+ |.-.+....+ . .. ++ ..+.+|-.+|. .+..+++.+
T Consensus 248 ~~~~~~~rS~lvLK~~~d~~~~GAiIAA~Tts~pe~~g~~~n~dYryvW~RD~a~~a~AL~~~G~------~~~a~~~~~ 321 (648)
T TIGR01535 248 KGNSLYYVSMMILKAHEDKTNPGAYIASLSIPWGDGQADDNTGGYHLVWPRDLYQVANAFLAAGD------VDSALRSLD 321 (648)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCcEEEecCCCCCccCCCCCCCceEEEehhhHHHHHHHHHHCCC------HHHHHHHHH
Confidence 46778888888899998763 8775432111 1 11 12 22345666675 467899999
Q ss_pred HHHhhccCCCCccc--ccCC-----CccccchHHHHHHH---HHcCCCCCCCCchHHHHHHHHHHHcC
Q 044313 88 YICNHQNEDGGWGL--HVEG-----HSTMFGTVFNYICM---RLLGEGPDGGENSGCTRARKWILDRG 145 (344)
Q Consensus 88 ~L~~~Q~~DGGWg~--~~~g-----~s~i~~T~~ay~AL---~l~G~~~~~~~~p~m~rAr~~Il~~G 145 (344)
||.+.|.+||.|-. +++| +-++..|++...++ .-.|...-. +.+++|.+||.++|
T Consensus 322 ~l~~~~~~~G~~lq~y~vdG~~~~~~iQlD~~g~~i~~~~~l~~~~~~~~~---~~vk~aadfl~~~~ 386 (648)
T TIGR01535 322 YLAKVQQDNGMFPQNSWVDGKPYWTGIQLDETAFPILLAYRLHRYDHAFYD---KMLKPAADFIVKNG 386 (648)
T ss_pred HHHHHhccCCCcCceeccCCCCCCCCccccHHHHHHHHHHHHHHcCcHHHH---HHHHHHHHHHHHcC
Confidence 99999999999832 1223 23455555554443 333441111 57999999999976
No 77
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=53.34 E-value=11 Score=38.09 Aligned_cols=22 Identities=23% Similarity=0.628 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhccCCCCccccc
Q 044313 82 RKEMLRYICNHQNEDGGWGLHV 103 (344)
Q Consensus 82 ~~~~~~~L~~~Q~~DGGWg~~~ 103 (344)
--.+.+||...|++-|||..-.
T Consensus 382 FyaAadWlV~NQd~kGGW~~pV 403 (594)
T KOG3760|consen 382 FYAAADWLVKNQDDKGGWSVPV 403 (594)
T ss_pred HHHHHHHHhhCCCCCCCCcchh
Confidence 4567899999999999998643
No 78
>PLN02279 ent-kaur-16-ene synthase
Probab=51.32 E-value=63 Score=35.76 Aligned_cols=88 Identities=16% Similarity=0.065 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcCC-CCCcccCCCCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCccccc
Q 044313 33 RRAVNIFSALQSS-HGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTMFG 111 (344)
Q Consensus 33 ~ra~~~L~~~Q~~-DG~W~g~~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~g~s~i~~ 111 (344)
+++.+||.+.++. +|.-++-|..+.|-...+|-.+.-+|.. ..+ ++.|+++++++.+.-. +|+ .+...++.+
T Consensus 245 ~~~~~yL~~~~~~~~g~vP~~yp~~~fe~l~lvd~L~rlGi~-~hF-~~EI~~~L~~~~~~~~-~~~----~~~~~Dl~~ 317 (784)
T PLN02279 245 AGCLRYLRSLLQKFGNAVPTVYPLDQYARLSMVDTLERLGID-RHF-RKEIKSVLDETYRYWL-QGE----EEIFLDLAT 317 (784)
T ss_pred hHHHHHHHHHHHhcCCCCCCCCcccHHHHhHHHHHHHHhCCc-ccc-HHHHHHHHHHHHHhhc-ccc----cCCCCCHHH
Confidence 5677777776655 3443444444444344445566667753 234 4568899988875332 221 224579999
Q ss_pred hHHHHHHHHHcCCCCC
Q 044313 112 TVFNYICMRLLGEGPD 127 (344)
Q Consensus 112 T~~ay~AL~l~G~~~~ 127 (344)
|+++.-.||..|+...
T Consensus 318 tAl~FRLLR~hGy~VS 333 (784)
T PLN02279 318 CALAFRILRLNGYDVS 333 (784)
T ss_pred HHHHHHHHHHcCCCCC
Confidence 9999999999998764
No 79
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=45.38 E-value=76 Score=30.85 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccCCC--------CCccccHHHHHHHHH
Q 044313 26 EIATTALRRAVNIFSALQSSHGHWPADNS--------GPLFFNTPMVICLYI 69 (344)
Q Consensus 26 ~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~--------~~~~~~a~~v~~l~~ 69 (344)
++..+.++++++|+.+.+.++|.|+.... +=+..+++.++++..
T Consensus 184 ~~~~~~i~~~i~~~~~~~~~~g~w~~~~~~~~~~~~~~wChG~~Gi~~~l~~ 235 (343)
T cd04794 184 PSLAPLIKRSLDYLLSLQFPSGNFPSSLGNRKRDRLVQWCHGAPGIVYLLAK 235 (343)
T ss_pred ccHHHHHHHHHHHHHHhhccCCCCCCccCCCCCCccccccCCCchHHHHHHH
Confidence 56888999999999999999999964322 123445666654433
No 80
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=44.27 E-value=69 Score=31.06 Aligned_cols=110 Identities=14% Similarity=0.157 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHhcC--CCCCcccCC--CC------CccccHHHHHHHHH---hcCCCCCCCHHHHHHHHHHHHh
Q 044313 25 PEIATTALRRAVNIFSALQS--SHGHWPADN--SG------PLFFNTPMVICLYI---TGHLNIIFSTEHRKEMLRYICN 91 (344)
Q Consensus 25 ~~~v~~ai~ra~~~L~~~Q~--~DG~W~g~~--~~------~~~~~a~~v~~l~~---lg~~~~~~~~~~~~~~~~~L~~ 91 (344)
.+...++++++++||.+.-. ++|.|.... ++ +.+..+..++++.. +|.. -..+..+++.++|.+
T Consensus 38 ~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~~~~~~~~Y~~af~l~ala~~~~tg~~---~~~~~A~~~~~~l~~ 114 (346)
T PF07221_consen 38 RPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGGPLDPQKDLYDQAFALLALAEARATGDP---EALELAEQTLEFLER 114 (346)
T ss_dssp SHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTEEEE--EEHHHHHHHHHHHHHHHCTT-T---THHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCCCCccccchHHHHHHHHHHHHHHHhCCh---hHHHHHHHHHHHHHH
Confidence 34477789999999999984 568886422 22 12333444554433 2432 124567889999988
Q ss_pred hc-cCC-CCcccccCCC-ccc------cchHHHHHHHHHcCCCCCCCCchHHHHHHHHHH
Q 044313 92 HQ-NED-GGWGLHVEGH-STM------FGTVFNYICMRLLGEGPDGGENSGCTRARKWIL 142 (344)
Q Consensus 92 ~Q-~~D-GGWg~~~~g~-s~i------~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il 142 (344)
+- .++ ||+....+++ +.+ --.++|+++|..+ ..+. ....+|.+.+.
T Consensus 115 ~~~d~~~g~~~~~~~~~~~~~r~~n~~mhl~eA~l~l~~~--~~~~---~~~~~a~~l~~ 169 (346)
T PF07221_consen 115 RFWDPEGGGYRESFDPDWSPPRGQNPHMHLLEAFLALYEA--TGDP---RYLDRAEELLD 169 (346)
T ss_dssp HTEETTTTEE--EETTTSSCBEEHHHHHHHHHHHHHHHHH--HHHH---HHHHHHHHHHH
T ss_pred HhcccccCcceeccCCccccCCCCChhHHHHHHHHHHHHh--ccCH---HHHHHHHHHHH
Confidence 75 554 5554443322 222 1345667666333 2232 45555555443
No 81
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=35.01 E-value=1.5e+02 Score=30.89 Aligned_cols=26 Identities=15% Similarity=0.100 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCccc
Q 044313 26 EIATTALRRAVNIFSALQSSHGHWPA 51 (344)
Q Consensus 26 ~~v~~ai~ra~~~L~~~Q~~DG~W~g 51 (344)
+++.+-+++.++.+.+.|.+||.-..
T Consensus 79 ~~l~~~~d~~V~~l~~~Q~~dGYl~~ 104 (520)
T PF07944_consen 79 PELKAKADEIVDELAAAQQPDGYLGT 104 (520)
T ss_pred HHHHHHHHHHHHHHHHhccCCceecc
Confidence 57888899999999999999996654
No 82
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=32.96 E-value=1.9e+02 Score=28.97 Aligned_cols=74 Identities=18% Similarity=0.225 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCcccCC----CCCcc-ccHHHHHHHHH-----hcCCCCCCCHHHHHHHHHHHHhhc
Q 044313 24 TPEIATTALRRAVNIFSALQSSHGHWPADN----SGPLF-FNTPMVICLYI-----TGHLNIIFSTEHRKEMLRYICNHQ 93 (344)
Q Consensus 24 ~~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~----~~~~~-~~a~~v~~l~~-----lg~~~~~~~~~~~~~~~~~L~~~Q 93 (344)
+...+...++.-++-|.+.|+++|-|.--+ .+|.. .+++..++..+ +|..+ +-..+..+|+.+=|+.+-
T Consensus 226 ~r~~l~~~l~d~v~al~r~Qde~GlW~tiLDd~~~~sy~EsSaSa~faYallkgi~~G~l~-~~~~~~~~kA~~aLl~~i 304 (357)
T COG4225 226 DRRELLNVLRDLVDALIRYQDESGLWHTILDDGRPGSYLESSASAGFAYALLKGINLGILD-PEYAPVAEKALDALLGHI 304 (357)
T ss_pred hHHHHHHHHHHHHHHHHHhhccccchhhhhccCCCCCchhhhHHHHHHHHHHHHHhcCCCC-chhhHHHHHHHHHHHhhc
Confidence 567888999999999999999999996421 22222 22333333222 24433 222357999999999998
Q ss_pred cCCCC
Q 044313 94 NEDGG 98 (344)
Q Consensus 94 ~~DGG 98 (344)
.++|-
T Consensus 305 ~~~g~ 309 (357)
T COG4225 305 DEEGE 309 (357)
T ss_pred ccccc
Confidence 87664
No 83
>PF09282 Mago-bind: Mago binding; InterPro: IPR015362 Members of this family adopt a structure consisting of a small globular all-beta-domain, with a three-stranded beta-sheet and a contiguous beta-hairpin. They bind to Mago alpha-helices via extensive electrostatic interactions and at a beta2-beta3 loop via hydrophobic interactions []. ; GO: 0005515 protein binding; PDB: 1RK8_C.
Probab=32.48 E-value=5.2 Score=24.91 Aligned_cols=13 Identities=38% Similarity=0.657 Sum_probs=7.2
Q ss_pred HHHhhccCCCCcc
Q 044313 88 YICNHQNEDGGWG 100 (344)
Q Consensus 88 ~L~~~Q~~DGGWg 100 (344)
+|-+.|++||+|.
T Consensus 4 ~I~~s~RpDGt~R 16 (27)
T PF09282_consen 4 IIPASQRPDGTWR 16 (27)
T ss_dssp EE--EE-TTS-EE
T ss_pred CcCcccCCCCCcc
Confidence 4567899999995
No 84
>COG3538 Uncharacterized conserved protein [Function unknown]
Probab=31.96 E-value=3e+02 Score=27.89 Aligned_cols=132 Identities=14% Similarity=0.256 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCC--cccCCC--CC-cccc---HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccC--
Q 044313 26 EIATTALRRAVNIFSALQSSHGH--WPADNS--GP-LFFN---TPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNE-- 95 (344)
Q Consensus 26 ~~v~~ai~ra~~~L~~~Q~~DG~--W~g~~~--~~-~~~~---a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~-- 95 (344)
.++.+.|++|++-+-..++++|+ |..|.. |+ .+++ ...++++-.+|-- ..+++.-++..+.|+|.-||
T Consensus 260 ~~L~~eIq~Gi~~~g~~~~~~~~~iyAyEVDG~Gn~l~MDDaNvPSLLa~PYLG~c--~~dDpvY~~TRk~iLS~eNPYy 337 (434)
T COG3538 260 KELANEIQQGIEQFGKMDHPKGGEIYAYEVDGLGNQLFMDDANVPSLLAAPYLGFC--EKDDPVYQNTRKTILSSENPYY 337 (434)
T ss_pred HHHHHHHHHHHHHhceecCCCCCeeEEEEecCCCceeeccCCCchhhhhhhhhccc--cCCCHHHHHHHHHHHhcCCCce
Confidence 46788899999999999999886 444322 22 2332 2244566666642 22357788899999999998
Q ss_pred -CCCcccccCCCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHH-cCCCCCcc---------hHHHHHHHHhC
Q 044313 96 -DGGWGLHVEGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILD-RGGATGIP---------SWGKTWLSILG 162 (344)
Q Consensus 96 -DGGWg~~~~g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~-~GG~~~~~---------~~tk~~LAl~G 162 (344)
.|.-.--.|++-+...++|- +||.+-|...++ +...+.-.++|.. .+|.--++ .|||=|.|-.+
T Consensus 338 ~eG~~a~GiGSpHTp~~yvWp-iaLaiqgLTa~D--~~ek~~iL~~L~~tdaGTg~MHE~f~vd~P~~fTR~WFsWAN 412 (434)
T COG3538 338 YEGKYASGIGSPHTPDHYVWP-IALAIQGLTAND--DSEKKEILDMLKATDAGTGLMHEGFDVDDPEQFTREWFSWAN 412 (434)
T ss_pred ecceeeccCCCCCCCCcccch-HHHHHhhcccCC--hHHHHHHHHHHHhccCCccceecccCCCCHHHhhhHHHHHHH
Confidence 56543334455566666663 467777777666 4667778888775 45543333 67776665443
No 85
>PRK13621 psbV cytochrome c-550; Provisional
Probab=31.24 E-value=1.1e+02 Score=27.48 Aligned_cols=58 Identities=14% Similarity=0.187 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcccCCCCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcc
Q 044313 28 ATTALRRAVNIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWG 100 (344)
Q Consensus 28 v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg 100 (344)
.++++..-++|+..-|.-||.=.. +++-+. + ...++++.++.++.||+.+-.-++|||
T Consensus 105 ~rd~I~~LV~~iknPms~kg~~~~-~~~~mp--s------------~~~LSdeEL~aIAaYLL~qA~~~~~Wg 162 (170)
T PRK13621 105 PRDNIAALVAYQRDPMSYDGSEES-YGCRQV--P------------EDWMTDEELQNLAAFILRAAQKAPGWG 162 (170)
T ss_pred chHHHHHHHHHhhCCCCCCccccc-ccccCC--c------------cCCCCHHHHHHHHHHHHhhhhhccCCC
Confidence 356777888888888877763100 000000 0 013668899999999999888889997
No 86
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=29.51 E-value=3.2e+02 Score=27.40 Aligned_cols=112 Identities=13% Similarity=0.130 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccccHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHHhhcc-
Q 044313 19 RGEEITPEIATTALRRAVNIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLN---IIFSTEHRKEMLRYICNHQN- 94 (344)
Q Consensus 19 ~~~~~~~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~~a~~v~~l~~lg~~~---~~~~~~~~~~~~~~L~~~Q~- 94 (344)
+++....+++.+-..+|+.-=..=+++| .|..--+.+-.+--...+++.++-..+ ..++++.+++.++||.+...
T Consensus 69 ~~~~~~~~~~~~~~~~gi~~GtdP~spd-yw~~~~~~dQ~~VEaa~la~aL~~a~~~lW~~L~~~~k~~l~~wL~~~~~~ 147 (361)
T PF10022_consen 69 TEEGKLREKLRELYRKGIANGTDPKSPD-YWGFIGDYDQRLVEAASLALALLRAPEWLWDPLDEEEKENLVDWLKQIRGI 147 (361)
T ss_pred ccccccHHHHHHHHHHHHHhcCCCCCcc-ccCCcccchhhHhHHHHHHHHHHHCHHHHHhhCCHHHHHHHHHHHHhcCcC
Q ss_pred --CCCCcccccCCCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHH
Q 044313 95 --EDGGWGLHVEGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILD 143 (344)
Q Consensus 95 --~DGGWg~~~~g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~ 143 (344)
++.-|-++ .+++-.+|+..|.+-|. ..|..+.+-|.+
T Consensus 148 ~~~~nNW~lF---------~v~v~~~L~~~G~~~d~---~~i~~~l~~~e~ 186 (361)
T PF10022_consen 148 KPPDNNWLLF---------RVMVEAFLKKVGEEYDE---ERIDYDLERIEE 186 (361)
T ss_pred CCccchhHHH---------HHHHHHHHHHcCCCCcH---HHHHHHHHHHHH
No 87
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.43 E-value=3.6e+02 Score=28.58 Aligned_cols=109 Identities=14% Similarity=0.103 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCccc------------CCCCCc-cccHHHH-----HHHHHhcCCCCCCCHHHHHHHHH
Q 044313 26 EIATTALRRAVNIFSALQSSHGHWPA------------DNSGPL-FFNTPMV-----ICLYITGHLNIIFSTEHRKEMLR 87 (344)
Q Consensus 26 ~~v~~ai~ra~~~L~~~Q~~DG~W~g------------~~~~~~-~~~a~~v-----~~l~~lg~~~~~~~~~~~~~~~~ 87 (344)
..+++-|++.++-+.+.|++||.=.+ ++..+- +.+++.+ -..+.+|+.. - -+...+.++
T Consensus 85 p~Lekr~D~vi~~~a~~QdedGYl~~~~q~~~pe~Rw~nlr~~HelY~aghLieg~va~~qaTGkr~-l--ldV~~rlAD 161 (589)
T COG3533 85 PELEKRIDEVVEELARAQDEDGYLGGWFQADFPEERWGNLRPNHELYCAGHLIEGGVAAHQATGKRR-L--LDVVCRLAD 161 (589)
T ss_pred HHHHHHHHHHHHHHHHhhccCCcccceeeccCchhhhhccccchHHHHhHHHHhhhhHHHHhhCcch-H--HHHHHHHHH
Confidence 35778899999999999999987543 111111 2344433 3456667642 1 256889999
Q ss_pred HHHhhccCCCCcccccCCCccccchHHHHHHHH-HcCCCCCCCCchHHHHHHHHHHHcCC
Q 044313 88 YICNHQNEDGGWGLHVEGHSTMFGTVFNYICMR-LLGEGPDGGENSGCTRARKWILDRGG 146 (344)
Q Consensus 88 ~L~~~Q~~DGGWg~~~~g~s~i~~T~~ay~AL~-l~G~~~~~~~~p~m~rAr~~Il~~GG 146 (344)
||.+.-.++=+=..-+-|++.|. +|++=|- +.|.. ..|.-|+.||...|-
T Consensus 162 hi~tvfgp~~~q~~g~~gH~eie---lAl~~Ly~~Tg~~------rYL~LA~~Fi~~rg~ 212 (589)
T COG3533 162 HIATVFGPEEDQVPGYCGHPEIE---LALAELYRLTGDQ------RYLDLARRFIHQRGV 212 (589)
T ss_pred hhhhhcCccccccccccCCCchh---HHHHHHHHHhcCh------HHHHHHHHHHHHhcc
Confidence 99987665433222223555554 4555542 33432 579999999998774
No 88
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=27.24 E-value=1.7e+02 Score=29.24 Aligned_cols=119 Identities=15% Similarity=0.038 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC-CCcccCC--------CCC-----cc---ccHHHHHH----HHHhcCCCCC--CCHHH
Q 044313 25 PEIATTALRRAVNIFSALQSSH-GHWPADN--------SGP-----LF---FNTPMVIC----LYITGHLNII--FSTEH 81 (344)
Q Consensus 25 ~~~v~~ai~ra~~~L~~~Q~~D-G~W~g~~--------~~~-----~~---~~a~~v~~----l~~lg~~~~~--~~~~~ 81 (344)
++-+++++.+=.....-+|.++ |-|.-.| ..+ .| ....++++ +..+-..... .-...
T Consensus 154 ~e~~d~~~~QF~~~~~~l~Dp~TGL~YH~wd~~~~~~w~~~~sG~~~fWaRg~gW~~mal~d~le~lp~~~~~r~~l~~~ 233 (357)
T COG4225 154 PEYFDEALYQFSLHEKYLRDPETGLYYHGWDEDGTMPWANNESGEPAFWARGNGWYAMALADLLELLPEDHPDRRELLNV 233 (357)
T ss_pred HHHHHHHHHHHHHHHHHccCCCcCceEEeeccCCCCccccccCCCceeeecccchHHHHHHHHHHhCCCCCchHHHHHHH
Confidence 4567777777777777778776 7664211 111 11 11223332 3333221100 00123
Q ss_pred HHHHHHHHHhhccCCCCcccccCC--C-c--cccchHHHHHHHHH---cCCCCCCCCchHHHHHHHHHHHc
Q 044313 82 RKEMLRYICNHQNEDGGWGLHVEG--H-S--TMFGTVFNYICMRL---LGEGPDGGENSGCTRARKWILDR 144 (344)
Q Consensus 82 ~~~~~~~L~~~Q~~DGGWg~~~~g--~-s--~i~~T~~ay~AL~l---~G~~~~~~~~p~m~rAr~~Il~~ 144 (344)
.+..++=|.+.|.++|=|-.-.+. + | +.|+|+.-..||.. .|+-..+.. ++.+||.+=|+.+
T Consensus 234 l~d~v~al~r~Qde~GlW~tiLDd~~~~sy~EsSaSa~faYallkgi~~G~l~~~~~-~~~~kA~~aLl~~ 303 (357)
T COG4225 234 LRDLVDALIRYQDESGLWHTILDDGRPGSYLESSASAGFAYALLKGINLGILDPEYA-PVAEKALDALLGH 303 (357)
T ss_pred HHHHHHHHHHhhccccchhhhhccCCCCCchhhhHHHHHHHHHHHHHhcCCCCchhh-HHHHHHHHHHHhh
Confidence 556667778899999999644432 2 3 56777775555554 566443322 7888888877663
No 89
>PRK13622 psbV cytochrome c-550; Provisional
Probab=26.49 E-value=70 Score=28.96 Aligned_cols=36 Identities=25% Similarity=0.367 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCcccccC-CCccccc
Q 044313 76 IFSTEHRKEMLRYICNHQNEDGGWGLHVE-GHSTMFG 111 (344)
Q Consensus 76 ~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~-g~s~i~~ 111 (344)
.++++.++....||+.+-...++||.--+ ++|++++
T Consensus 142 ~LsdeEI~~VA~yIl~qa~~~~~Wg~~k~~~~~~~~~ 178 (180)
T PRK13622 142 NLTDEDLKLIAGYILVQAKTVPGWGGTKNESHSDLSA 178 (180)
T ss_pred CCCHHHHHHHHHHHHhCcccCCccCCCCCCCcchhhh
Confidence 47789999999999998887889997655 7777763
No 90
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=26.06 E-value=1e+02 Score=31.72 Aligned_cols=93 Identities=18% Similarity=0.287 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccCCCC---CccccHH----HHHHHHH----hcCCCCCC--CHHHHHHHHHHHHhhccC
Q 044313 29 TTALRRAVNIFSALQSSHGHWPADNSG---PLFFNTP----MVICLYI----TGHLNIIF--STEHRKEMLRYICNHQNE 95 (344)
Q Consensus 29 ~~ai~ra~~~L~~~Q~~DG~W~g~~~~---~~~~~a~----~v~~l~~----lg~~~~~~--~~~~~~~~~~~L~~~Q~~ 95 (344)
.+.++++++.+...|.+||.++....+ .....+. +|+..+. .|-.. .+ .-+.+++.++|+.++.++
T Consensus 168 ~~l~~~~l~~~~~~q~~~G~~p~~~P~~~~~~~~~~~w~l~~i~~~~~~y~~tGD~~-~l~~~~~~~~~~l~~~~~~~~~ 246 (509)
T PF05592_consen 168 AALYRKWLRDFADSQRPDGLLPSVAPSYGGGGFGIPDWSLAWIIIPWDYYLYTGDRE-FLEEYYPAMKRYLDYLERRVDD 246 (509)
T ss_dssp HHHHHHHHHHHHGGTTTSTT-SSBSS---SSGGGBHHHHHHHHHHHHHHHHHHT-HH-HHHHHHHHHHHHHHHHHTTB-T
T ss_pred HHHHHHHHHHHHHhhcccCCceEEecccCCCCCCCccHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHHHHHhCCc
Confidence 457899999999999999999874322 1222222 2322221 23210 00 013588889999998887
Q ss_pred ----CCCccc--cc------C--CCccccchHHHHHHHHHc
Q 044313 96 ----DGGWGL--HV------E--GHSTMFGTVFNYICMRLL 122 (344)
Q Consensus 96 ----DGGWg~--~~------~--g~s~i~~T~~ay~AL~l~ 122 (344)
..+|++ .. . .+.....|++-|.+|+.+
T Consensus 247 ~~~~~~~~~~~DW~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 287 (509)
T PF05592_consen 247 GLDGLPGWGFGDWLAPGNDGDGPTPGATITNALYYYALRAA 287 (509)
T ss_dssp SSB-CCSB--S-SS----TT---SCCEEHHHHHHHHHHHHH
T ss_pred cccCCCCCceeecCCccCcccccchHHHHHHHHHHHHHHHH
Confidence 233432 12 1 234555677777777543
No 91
>TIGR03046 PS_II_psbV2 photosystem II cytochrome PsbV2. Members of this protein family are PsbV2, a protein closely related cytochrome c-550 (PsbV), a protein important to the water-splitting and oxygen-evolving activity of photosystem II. Mutant studies in Thermosynechococcus elongatus showed PsbV2 can partially replace PsbV, from which it appears to have arisen first by duplication, then by intergenic recombination with a different gene.
Probab=23.75 E-value=66 Score=28.42 Aligned_cols=25 Identities=20% Similarity=0.530 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCcc
Q 044313 76 IFSTEHRKEMLRYICNHQNEDGGWG 100 (344)
Q Consensus 76 ~~~~~~~~~~~~~L~~~Q~~DGGWg 100 (344)
.++++.++.++.||+.+-...+|||
T Consensus 127 ~LsdeEL~aIAaYLl~qa~~~~~Wg 151 (155)
T TIGR03046 127 WMDDEEVENLAAFILRAAQKAPGWG 151 (155)
T ss_pred CCCHHHHHHHHHHHHHhhhhcCCCC
Confidence 3668899999999999888899997
No 92
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=23.46 E-value=1.6e+02 Score=30.61 Aligned_cols=60 Identities=15% Similarity=0.191 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhhccCCCCcccccCCC--------cc----ccchHHHHHHH----HHcCCCCCCCCchHHHHHHHHH
Q 044313 79 TEHRKEMLRYICNHQNEDGGWGLHVEGH--------ST----MFGTVFNYICM----RLLGEGPDGGENSGCTRARKWI 141 (344)
Q Consensus 79 ~~~~~~~~~~L~~~Q~~DGGWg~~~~g~--------s~----i~~T~~ay~AL----~l~G~~~~~~~~p~m~rAr~~I 141 (344)
.+.++++++.|.+.|.+||=-|-++... .. +++.-.-+.|| .+.|...-- +.+.|..+|+
T Consensus 82 ~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~~ll~gl~~~y~~tG~~~~L---~v~~k~ad~~ 157 (520)
T PF07944_consen 82 KAKADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELYCLGKLLEGLIDYYEATGNERAL---DVATKLADWV 157 (520)
T ss_pred HHHHHHHHHHHHHhccCCceecccccccccccccCCCCCccceehHhHHHHHHHHHHHHHCcHHHH---HHHHHHHHHH
Confidence 3568899999999999999555444322 11 44444333344 345654433 5677888888
No 93
>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function.
Probab=23.27 E-value=85 Score=22.75 Aligned_cols=40 Identities=30% Similarity=0.557 Sum_probs=25.2
Q ss_pred cCCCCcccccCCCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCCC
Q 044313 94 NEDGGWGLHVEGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGA 147 (344)
Q Consensus 94 ~~DGGWg~~~~g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG~ 147 (344)
++||||..-.+|.+..+.|. +... .++.+|++.....||+
T Consensus 6 ~~~~~W~v~~eg~~ra~~~~-----------~Tk~---eAi~~Ar~~a~~~~~~ 45 (62)
T PF09954_consen 6 REDGGWAVKKEGAKRASKTF-----------DTKA---EAIEAARELAKNQGGG 45 (62)
T ss_pred cCCCCceEEeCCCccccccc-----------CcHH---HHHHHHHHHHHhCCCc
Confidence 68999987666544322111 2222 6899999999887443
No 94
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=21.88 E-value=9.4e+02 Score=25.88 Aligned_cols=203 Identities=15% Similarity=0.177 Sum_probs=99.7
Q ss_pred hHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhCCcCCCCCCCCCCccc--cCCCCCCCCcCC
Q 044313 112 TVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGATGIPSWGKTWLSILGVYDWSGCNPMPPEFW--KLPHFLPISPGK 189 (344)
Q Consensus 112 T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG~~~~~~~tk~~LAl~G~~~W~~~~~lP~El~--llP~~~P~~~~~ 189 (344)
++.+..||.++|+. ....+..+|+.+.+...+. +.+.|.+++-.-.+.++- .=..-+|+-+.+
T Consensus 290 ~~~~~~AL~~~G~~------~~a~~~f~~l~~~~~~~~~---------~~~~y~~~g~~~~~~w~~~~~~~~~~pv~~~~ 354 (612)
T COG3387 290 ASYAALALLAIGYK------KEALRFFEFLPDVQTPNGK---------LYHKYSIDGSDLAESWLPVSGYYNSFPVRIGN 354 (612)
T ss_pred HHHHHHHHHHcCCH------HHHHHHHHHHHHhhCCCCc---------eeeEEecCCCccccccccccCCCCCCceEEcc
Confidence 46677899999985 4688899999998766654 667787777521121111 112566666666
Q ss_pred cchhcchhhhhhhhhhcCccccc-----CCchhhhhhh-----hhccCCCCCCchhhhcccccccCCCCCchhhHHHHHH
Q 044313 190 LLCYCRLTYMPMSYFYGKRFVGP-----ITPLVLQLRE-----EIYIQPYDEINWSKLRHLCAKEDLFFPHTTVQNLLWD 259 (344)
Q Consensus 190 ~~~~~R~~~vPm~il~~~r~~~~-----~~~~~~~l~~-----EL~~~p~~~~~w~~~r~~~~~~d~~~p~~~~~~~~~~ 259 (344)
.....-+.-+=+.++-+..+..+ ..+...-++. +....|-..+ |.. |-. +++++. ...+.
T Consensus 355 ~a~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-WEe-r~g------~~~yt~--~~~~a 424 (612)
T COG3387 355 TALVQGALDVYGSIMNDIYFYAKYYAIYILPAADYLRRMEKIKANLPTPDFDL-WEE-RGG------HFTYTK--ATVYA 424 (612)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhhhcCCCCCccce-ecc-cCC------cccchH--HHHHH
Confidence 65555554443333332222211 1111111111 1222222222 431 111 234443 33444
Q ss_pred HHHHhhh---hcccCCCChHHHHHHHHHHHhHHHhhh--cCCcccc--cc-----cccccccccccc-ccCCCcHHHHHH
Q 044313 260 ALHNQVE---PVLNRWPLNKLREKSLEAAMTHIHYED--EASRYMT--IG-----CVEKPLNMLSCW-AEDPNGDYFKKH 326 (344)
Q Consensus 260 ~l~~~~e---~~~~~~~~~~lR~~Al~~~~~~i~~~~--~~t~~~~--i~-----~v~~~l~~l~~~-~~~p~~~~~~~~ 326 (344)
.|....+ .+=..-+...+|+.|.+ +.+-+.... +.++|+. ++ -|...+..+..+ +-.|++|.|..-
T Consensus 425 gLd~A~~lA~~~gd~~~a~~~~~~ad~-ik~~v~~~~~~~~~~~f~r~~~~~~~~~vDasll~l~~fg~i~~~D~~~~~t 503 (612)
T COG3387 425 GLDAAADLAEEFGDKGSAEHWRKTADE-LKEAVLRRGYAEDGGYFVRSLGRKPDDTVDASLLGLVLFGFIPPDDPRILAT 503 (612)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHH-HHHHHHHhcccccCCeeehhcCCCccccccHHHhhccccCccCCCCHHHHHH
Confidence 4433221 11001112234555533 444444331 1222222 22 124456666664 568999999999
Q ss_pred HHhhccceEecCCc
Q 044313 327 LARIGEYFWMGEDG 340 (344)
Q Consensus 327 ~~~l~~~l~~~~~G 340 (344)
+++|.+-+.+...|
T Consensus 504 ~~~I~~~L~~~~~g 517 (612)
T COG3387 504 VEAIERELLVDGGG 517 (612)
T ss_pred HHHHHHHHhhcCCc
Confidence 99999988765444
Done!