Query 044313
Match_columns 344
No_of_seqs 183 out of 1246
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 23:37:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044313.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044313hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w6k_A Lanosterol synthase; cy 100.0 1E-82 3.6E-87 673.9 23.2 310 24-344 69-379 (732)
2 2sqc_A Squalene-hopene cyclase 100.0 8.7E-72 3E-76 582.5 22.8 295 24-344 7-305 (631)
3 2h6f_B Protein farnesyltransfe 99.4 1.7E-13 5.8E-18 137.1 6.5 107 32-146 174-282 (437)
4 1n4q_B Geranyltransferase type 99.4 8.1E-13 2.8E-17 129.9 8.6 129 33-165 145-287 (377)
5 1w6k_A Lanosterol synthase; cy 99.4 1.9E-12 6.6E-17 137.0 12.0 116 26-147 554-683 (732)
6 2sqc_A Squalene-hopene cyclase 99.4 2.1E-12 7E-17 134.7 11.9 111 29-146 465-586 (631)
7 3dss_B Geranylgeranyl transfer 99.4 1.7E-12 5.8E-17 125.5 10.3 106 32-145 116-223 (331)
8 2h6f_B Protein farnesyltransfe 99.3 2.3E-12 7.9E-17 128.9 8.7 111 30-145 121-233 (437)
9 1hzf_A Complement factor C4A; 99.2 3.3E-11 1.1E-15 117.7 10.0 131 25-161 86-243 (367)
10 3q7a_B Farnesyltransferase bet 99.2 6.5E-11 2.2E-15 119.9 9.9 115 25-146 162-306 (520)
11 3dss_B Geranylgeranyl transfer 99.1 6.6E-11 2.3E-15 114.4 7.7 106 32-145 68-175 (331)
12 1qqf_A Protein (complement C3D 99.1 3.8E-10 1.3E-14 105.5 12.6 131 25-160 33-185 (277)
13 2wy7_A Complement C3D fragment 99.1 7.7E-10 2.6E-14 105.3 12.5 131 25-160 49-201 (310)
14 4acq_A Alpha-2-macroglobulin; 98.8 9.3E-09 3.2E-13 116.1 12.1 128 27-158 980-1127(1451)
15 3q7a_B Farnesyltransferase bet 98.8 1.1E-08 3.8E-13 103.7 9.7 115 31-149 110-236 (520)
16 1n4q_B Geranyltransferase type 98.8 5.6E-09 1.9E-13 102.6 7.3 107 32-145 69-204 (377)
17 1gxm_A Pectate lyase; mechanis 98.7 1.2E-08 4.1E-13 98.0 6.1 117 26-146 93-251 (332)
18 1r76_A Pectate lyase; A-helica 98.6 7.6E-08 2.6E-12 94.9 6.8 118 26-146 171-328 (408)
19 1qqf_A Protein (complement C3D 98.5 2.5E-07 8.6E-12 86.3 9.1 111 29-145 88-251 (277)
20 2hr0_B Complement C3 alpha' ch 98.5 3.5E-07 1.2E-11 99.0 11.5 128 27-159 296-445 (915)
21 2wy7_A Complement C3D fragment 98.5 1.8E-07 6E-12 88.9 7.7 111 29-145 104-267 (310)
22 2pn5_A TEP1R, thioester-contai 98.2 2.7E-06 9.2E-11 95.3 10.6 131 25-158 867-1009(1325)
23 1hzf_A Complement factor C4A; 98.2 3.3E-06 1.1E-10 82.2 9.8 112 29-145 141-337 (367)
24 1r76_A Pectate lyase; A-helica 98.1 2.7E-06 9.3E-11 83.8 7.1 115 30-147 81-260 (408)
25 3dra_B Geranylgeranyltransfera 98.1 3.1E-06 1.1E-10 83.3 7.0 109 33-147 118-253 (390)
26 4fxk_B Complement C4-A alpha c 98.0 3.4E-05 1.2E-09 81.7 12.1 131 26-157 364-516 (767)
27 2b39_A C3; thioester, immune d 97.9 6.6E-05 2.3E-09 85.9 14.2 129 26-159 1042-1192(1661)
28 2bb6_A TCII, TC II, transcobal 97.9 3.3E-05 1.1E-09 76.4 9.3 122 34-164 156-285 (414)
29 1gxm_A Pectate lyase; mechanis 97.9 1.2E-05 4E-10 77.3 5.9 111 34-147 35-184 (332)
30 2pmv_A Gastric intrinsic facto 97.8 7.2E-05 2.5E-09 73.6 10.4 116 33-163 133-260 (399)
31 2hr0_B Complement C3 alpha' ch 97.6 9.2E-05 3.2E-09 80.1 8.1 111 29-145 349-512 (915)
32 3cu7_A Complement C5; Mg domai 97.6 0.00022 7.5E-09 81.7 11.0 129 26-160 1043-1193(1676)
33 3prx_B Cobra venom factor; imm 97.4 1.9E-05 6.5E-10 90.1 0.0 116 26-144 1026-1162(1642)
34 3dra_B Geranylgeranyltransfera 97.4 0.00034 1.2E-08 68.8 8.1 118 32-151 55-214 (390)
35 2bb6_A TCII, TC II, transcobal 97.3 0.00031 1E-08 69.5 6.9 79 26-120 202-282 (414)
36 3sdr_A Alpha-bisabolene syntha 97.3 0.00012 4.1E-09 78.3 3.8 108 26-144 50-162 (817)
37 2pmv_A Gastric intrinsic facto 97.0 0.00058 2E-08 67.2 5.2 84 25-124 178-262 (399)
38 2pn5_A TEP1R, thioester-contai 96.9 0.0024 8.2E-08 71.5 9.7 91 51-145 837-937 (1325)
39 3s9v_A Abietadiene synthase, c 96.9 0.00064 2.2E-08 72.4 4.5 59 81-144 75-135 (785)
40 3pya_A ENT-copalyl diphosphate 96.5 0.0012 4.1E-08 69.6 3.6 57 82-144 52-111 (727)
41 4acq_A Alpha-2-macroglobulin; 96.5 0.0048 1.7E-07 69.9 8.7 91 51-145 948-1051(1451)
42 3p5p_A Taxadiene synthase; cla 96.4 0.0022 7.4E-08 68.2 4.9 59 81-144 54-114 (764)
43 4fxk_B Complement C4-A alpha c 94.7 0.11 3.7E-06 54.8 9.8 94 50-147 329-434 (767)
44 2b39_A C3; thioester, immune d 90.6 0.35 1.2E-05 55.5 7.0 59 82-143 1048-1108(1661)
45 3cu7_A Complement C5; Mg domai 88.2 0.49 1.7E-05 54.2 5.9 59 82-143 1049-1109(1676)
46 3prx_B Cobra venom factor; imm 86.5 0.13 4.6E-06 58.9 0.0 103 34-145 981-1096(1642)
47 3pmm_A Putative cytoplasmic pr 82.9 3.1 0.00011 40.1 8.0 118 25-143 189-331 (382)
48 3s9v_A Abietadiene synthase, c 79.7 3 0.0001 44.4 7.0 90 33-126 245-337 (785)
49 3pmm_A Putative cytoplasmic pr 76.8 7 0.00024 37.6 8.2 74 25-99 258-339 (382)
50 1lf6_A Glucoamylase; (alpha/al 74.2 12 0.00043 38.7 9.8 64 79-145 358-429 (684)
51 3p5p_A Taxadiene synthase; cla 72.5 6.4 0.00022 41.7 7.1 91 33-126 221-313 (764)
52 3k11_A Putative glycosyl hydro 69.9 6.6 0.00023 38.9 6.2 75 24-98 288-370 (445)
53 1nc5_A Hypothetical protein YT 69.6 5.7 0.0002 37.9 5.6 62 81-143 242-313 (373)
54 3sdr_A Alpha-bisabolene syntha 66.7 9.3 0.00032 40.8 6.9 91 33-126 273-365 (817)
55 1nc5_A Hypothetical protein YT 66.4 16 0.00054 34.8 7.9 72 25-97 236-322 (373)
56 1ulv_A Glucodextranase; GH fam 63.7 59 0.002 35.4 12.6 112 27-145 281-421 (1020)
57 3pya_A ENT-copalyl diphosphate 57.5 22 0.00075 37.4 7.6 92 33-127 220-313 (727)
58 3e6u_A LANC-like protein 1; al 54.3 31 0.001 33.3 7.7 47 23-69 247-300 (411)
59 3k11_A Putative glycosyl hydro 46.7 15 0.00053 36.2 4.2 92 27-119 225-336 (445)
60 1ulv_A Glucodextranase; GH fam 43.5 31 0.0011 37.6 6.3 88 32-121 350-449 (1020)
61 2gz6_A N-acetyl-D-glucosamine 41.9 63 0.0021 30.1 7.6 71 26-99 73-158 (388)
62 1wgn_A UBAP1, ubiquitin associ 36.1 35 0.0012 24.5 3.5 29 62-98 35-63 (63)
63 4ae4_A Ubiquitin-associated pr 35.3 16 0.00056 29.4 1.9 77 63-147 25-117 (118)
64 1lf6_A Glucoamylase; (alpha/al 31.9 41 0.0014 34.7 4.8 87 31-122 360-458 (684)
65 2vn4_A Glucoamylase; hydrolase 29.1 2.8E+02 0.0096 28.1 10.4 57 80-143 157-222 (599)
66 2gz6_A N-acetyl-D-glucosamine 26.2 96 0.0033 28.8 5.9 91 27-120 11-125 (388)
67 2ekk_A UBA domain from E3 ubiq 25.6 66 0.0022 21.1 3.3 24 112-144 23-46 (47)
68 3gt5_A N-acetylglucosamine 2-e 23.9 1.4E+02 0.0049 28.2 6.7 92 26-120 9-123 (402)
69 1veg_A NEDD8 ultimate buster-1 21.5 98 0.0034 23.3 3.9 27 112-146 43-69 (83)
70 2cpw_A CBL-interacting protein 21.0 1.1E+02 0.0037 21.6 3.9 26 63-95 36-61 (64)
71 1f1c_A Cytochrome C549; dimeri 20.5 30 0.001 26.8 0.9 25 76-100 104-129 (129)
72 1c6r_A Cytochrome C6; electron 20.4 56 0.0019 23.2 2.4 23 76-99 67-89 (89)
No 1
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=100.00 E-value=1e-82 Score=673.95 Aligned_cols=310 Identities=38% Similarity=0.791 Sum_probs=296.7
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCccccc
Q 044313 24 TPEIATTALRRAVNIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHV 103 (344)
Q Consensus 24 ~~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~ 103 (344)
..+++.+|++++++||+++|.+||||++|+++++|+++++|+++|++|. .++++.++++++||+++||+|||||+|+
T Consensus 69 ~~~~~~~a~~~~~~~~~~~Q~~dG~W~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~yl~~~Q~~DGgWgl~~ 145 (732)
T 1w6k_A 69 KAHTAFEGALNGMTFYVGLQAEDGHWTGDYGGPLFLLPGLLITCHVARI---PLPAGYREEIVRYLRSVQLPDGGWGLHI 145 (732)
T ss_dssp CCCSHHHHHHHHHHHHHTTBCTTSCBCCCCCCBSSHHHHHHHHHHHHTC---CCCTTHHHHHHHHHHHHSCTTSCBCSBT
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCCccccccCchhhhHHHHHHHHHhCC---CCCHHHHHHHHHHHHHhcCCCCCccCCc
Confidence 4557999999999999999999999999999999999999999999985 4556789999999999999999999999
Q ss_pred CCCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhCCcCCCCCCCCCCccccCCCCC
Q 044313 104 EGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGATGIPSWGKTWLSILGVYDWSGCNPMPPEFWKLPHFL 183 (344)
Q Consensus 104 ~g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG~~~~~~~tk~~LAl~G~~~W~~~~~lP~El~llP~~~ 183 (344)
+|+|++++|++||+|||++|+++++ |+|+|||+||+++||++++|+|||||||++|+|+|+++|+|||||||||+||
T Consensus 146 ~~~s~~~~T~~~Y~aLrl~G~~~~~---~~~~~ar~~i~~~GG~~~~~~~~k~~La~~g~~~W~~~~~~PpE~~llP~~~ 222 (732)
T 1w6k_A 146 EDKSTVFGTALNYVSLRILGVGPDD---PDLVRARNILHKKGGAVAIPSWGKFWLAVLNVYSWEGLNTLFPEMWLFPDWA 222 (732)
T ss_dssp TSCCBHHHHHHHHHHHHHTTCCTTS---HHHHHHHHHHHHTTCGGGCCHHHHHHHHHTTSSCGGGSCCCCGGGGGSCTTS
T ss_pred CCCccHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHHHcCCcccCcHHHHHHHHHcCCCCcccCCCCCHHHHHccCcC
Confidence 9999999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCcchhcchhhhhhhhhhcCcccccCCchhhhhhhhhccCCCCCCchhhhcccccccCCCCCchhhHHHHHHHHHH
Q 044313 184 PISPGKLLCYCRLTYMPMSYFYGKRFVGPITPLVLQLREEIYIQPYDEINWSKLRHLCAKEDLFFPHTTVQNLLWDALHN 263 (344)
Q Consensus 184 P~~~~~~~~~~R~~~vPm~il~~~r~~~~~~~~~~~l~~EL~~~p~~~~~w~~~r~~~~~~d~~~p~~~~~~~~~~~l~~ 263 (344)
|||||+||||+|+|||||+||+++||+++.+|++.+||+|||++||++|+|.++|+.|+++|+|+|++.++..++..+ +
T Consensus 223 p~~~~~~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~lr~el~~~~~~~~~~~~~r~~~~~~d~~~p~~~~~~~~~~~l-~ 301 (732)
T 1w6k_A 223 PAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTPHSWLLRVVYALL-N 301 (732)
T ss_dssp TTCGGGSCHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHTTSCSSCGGGCCSGGGTTCCCGGGCSSCCCHHHHHHHHHH-H
T ss_pred CCCHHHHHHHHHHHHHhHHHHhhcCCCCCCCcchhhHHHHhcCCCccccchhhhccccccccccCCHHHHHHHHHHHH-H
Confidence 999999999999999999999999999998999999999999999999999999999999999999999998887766 6
Q ss_pred hhhhcccCCCChHHHHHHHHHHHhHHHhhhcCCcccccccccccccccccccc-CCCcHHHHHHHHhhccceEecCCccc
Q 044313 264 QVEPVLNRWPLNKLREKSLEAAMTHIHYEDEASRYMTIGCVEKPLNMLSCWAE-DPNGDYFKKHLARIGEYFWMGEDGMR 342 (344)
Q Consensus 264 ~~e~~~~~~~~~~lR~~Al~~~~~~i~~~~~~t~~~~i~~v~~~l~~l~~~~~-~p~~~~~~~~~~~l~~~l~~~~~G~~ 342 (344)
.+|+++ ++++|++|++++++||++++++++|++|+||++++||+++|.+ +|+||.|++|+++|++|+|+.+|||+
T Consensus 302 ~~e~~~----~~~lr~~a~~~~~~~i~~~~~~~~~~~i~pv~~~l~~l~~~~~~G~~~~~~~~~l~~l~~~l~~~~dG~~ 377 (732)
T 1w6k_A 302 LYEHHH----SAHLRQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRIPDYLWMGLDGMK 377 (732)
T ss_dssp HHHHTC----CHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHCTTSHHHHHHHHTSGGGEEEETTEEE
T ss_pred HhhhcC----cHHHHHHHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhheeCCCCce
Confidence 777765 4779999999999999999999999999999999999999984 69999999999999999999999999
Q ss_pred cC
Q 044313 343 VQ 344 (344)
Q Consensus 343 ~q 344 (344)
+|
T Consensus 378 ~q 379 (732)
T 1w6k_A 378 MQ 379 (732)
T ss_dssp EC
T ss_pred eC
Confidence 87
No 2
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=100.00 E-value=8.7e-72 Score=582.45 Aligned_cols=295 Identities=18% Similarity=0.254 Sum_probs=262.5
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCccccc
Q 044313 24 TPEIATTALRRAVNIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHV 103 (344)
Q Consensus 24 ~~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~ 103 (344)
+.+++++|+++|++||+++|.+||||++|+++++|+++++|+++|++|..+ ++.++++++||+++||+|||||+|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~q~~dG~w~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~yl~~~Q~~dGgW~~~~ 82 (631)
T 2sqc_A 7 EAPAYARTLDRAVEYLLSCQKDEGYWWGPLLSNVTMEAEYVLLCHILDRVD----RDRMEKIRRYLLHEQREDGTWALYP 82 (631)
T ss_dssp -CCHHHHHHHHHHHHHHHHCCTTSCCCCCEECCTHHHHHHHHHHHHTTCCC----HHHHHHHHHHHHHHSCTTSCCCSST
T ss_pred chHHHHHHHHHHHHHHHHhcCCCCcccccCCCcchhhHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCCCCCccCCC
Confidence 456799999999999999999999999999999999999999999999754 4789999999999999999999999
Q ss_pred CCCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHhCCcCCCCCCCCCCccccCCCCC
Q 044313 104 EGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGATGIPSWGKTWLSILGVYDWSGCNPMPPEFWKLPHFL 183 (344)
Q Consensus 104 ~g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG~~~~~~~tk~~LAl~G~~~W~~~~~lP~El~llP~~~ 183 (344)
+|+|++++|++||+|||++|+++++ |+|+|||+||+++||++++|+|||+|||++|+|+|+++|+||||+||||+||
T Consensus 83 ~~~~~~~~t~~~y~aLrllg~~~~~---~~~~~ar~~i~~~GG~~~~~~~~k~~La~~G~~~w~~~~~~p~e~~llp~~~ 159 (631)
T 2sqc_A 83 GGPPDLDTTIEAYVALKYIGMSRDE---EPMQKALRFIQSQGGIESSRVFTRMWLALVGEYPWEKVPMVPPEIMFLGKRM 159 (631)
T ss_dssp TCCCCHHHHHHHHHHHHHHTCCTTS---HHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTSSCGGGSCCCCGGGGGSCTTS
T ss_pred CCCcchHHHHHHHHHHHhcCCCCCh---HHHHHHHHHHHHcCCcccCCHHHHHHHHHcCCCCcccCCCCCHHHHHccccc
Confidence 9999999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCcchhcchhhhhhhhhhcCcccccCCchhhhhhhhhccCCCCCCchhhhcccccccCCCCCchhhHHHHHHHHHH
Q 044313 184 PISPGKLLCYCRLTYMPMSYFYGKRFVGPITPLVLQLREEIYIQPYDEINWSKLRHLCAKEDLFFPHTTVQNLLWDALHN 263 (344)
Q Consensus 184 P~~~~~~~~~~R~~~vPm~il~~~r~~~~~~~~~~~l~~EL~~~p~~~~~w~~~r~~~~~~d~~~p~~~~~~~~~~~l~~ 263 (344)
|||+++||||+|+|+|||+||+++||+++.++++ +| +|||++||++++|.. +.|.+.+...+ +.+++
T Consensus 160 p~~~~~~~~~~R~~~~P~~~l~~~r~~~~~~~~~-~l-~el~~~~~~~~~~~~----------~~~~~~~~~~~-~~~l~ 226 (631)
T 2sqc_A 160 PLNIYEFGSWARATVVALSIVMSRQPVFPLPERA-RV-PELYETDVPPRRRGA----------KGGGGWIFDAL-DRALH 226 (631)
T ss_dssp TTCGGGSCHHHHHHHHHHHHHHHHCCCCCCCGGG-CC-GGGGCCSSCCCCCCC----------TTCCCHHHHHH-HHHHH
T ss_pred ccCHhHhHHHHHHHHHhHHHHhhCCCccCCCCCC-CH-HHhcCCCccccCccc----------cccHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999987776 78 999999999999862 33555554444 33334
Q ss_pred hhhhcccCCCChHHHHHHHHHHHhHHHhhhcCCcc---ccccccccccccccccccCCCcHHHHHHHHhhccceEecCC-
Q 044313 264 QVEPVLNRWPLNKLREKSLEAAMTHIHYEDEASRY---MTIGCVEKPLNMLSCWAEDPNGDYFKKHLARIGEYFWMGED- 339 (344)
Q Consensus 264 ~~e~~~~~~~~~~lR~~Al~~~~~~i~~~~~~t~~---~~i~~v~~~l~~l~~~~~~p~~~~~~~~~~~l~~~l~~~~~- 339 (344)
++++ +++++||++|++++++||+++++++++ |+.+++|+++++.++.. ++||.+++|+++|++|+|+.+|
T Consensus 227 ~~~~----~~~~~lr~~a~~~~~~~i~~~~~~~g~~~~i~p~~~~~~~~l~~~g~--~~~~~~~~~~~~~~~~~~~~~dG 300 (631)
T 2sqc_A 227 GYQK----LSVHPFRRAAEIRALDWLLERQAGDGSWGGIQPPWFYALIALKILDM--TQHPAFIKGWEGLELYGVELDYG 300 (631)
T ss_dssp HHHH----SSCCTTHHHHHHHHHHHHHHHCCTTSSSTTSHHHHHHHHHHHHHTTC--TTSHHHHHHHHGGGGGEEECTTS
T ss_pred Hhhc----CCcHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhceEEcCCC
Confidence 4444 455669999999999999999999986 33455566555555533 4999999999999999999998
Q ss_pred ccccC
Q 044313 340 GMRVQ 344 (344)
Q Consensus 340 G~~~q 344 (344)
||+||
T Consensus 301 g~~~~ 305 (631)
T 2sqc_A 301 GWMFQ 305 (631)
T ss_dssp CEEEC
T ss_pred ceeeC
Confidence 89987
No 3
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=99.40 E-value=1.7e-13 Score=137.09 Aligned_cols=107 Identities=13% Similarity=0.111 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhcCCCCCcccCCCC--CccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCccc
Q 044313 32 LRRAVNIFSALQSSHGHWPADNSG--PLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTM 109 (344)
Q Consensus 32 i~ra~~~L~~~Q~~DG~W~g~~~~--~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~g~s~i 109 (344)
++++++||.+.|++||+|.+...| .+..+...+.++..+|..+ ++.++++++||+++|++|||||..++++|+.
T Consensus 174 i~kav~~L~s~Q~~DGsf~~~~~Ge~d~~~ty~A~~~L~llg~~~----~~~v~k~~~~L~s~Q~~DGGwg~~pg~eSh~ 249 (437)
T 2h6f_B 174 REKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIIT----PDLFEGTAEWIARCQNWEGGIGGVPGMEAHG 249 (437)
T ss_dssp HHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCC----TTTTTTHHHHHHHHBCTTSSBCSSTTSCCCH
T ss_pred HHHHHHHHHHhCCCCCCeeecCCCCccchhHHHHHHHHHHhCCCC----hHHHHHHHHHHHHccCCCCCcCCCCCCCCCc
Confidence 789999999999999999985322 3333444456678888643 4568999999999999999999999999999
Q ss_pred cchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCC
Q 044313 110 FGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGG 146 (344)
Q Consensus 110 ~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG 146 (344)
..|.+|+.||.++|.... ..+.|+++||.+++.
T Consensus 250 ~~T~~Al~aL~~lg~~~~----~~~~rl~~wL~~rQ~ 282 (437)
T 2h6f_B 250 GYTFCGLAALVILKRERS----LNLKSLLQWVTSRQM 282 (437)
T ss_dssp HHHHHHHHHHHHHTCGGG----SCHHHHHHHHHHTBC
T ss_pred cHHHHHHHHHHHcCCCCc----ccHHHHHHHHHhcCC
Confidence 999999999999997532 359999999999764
No 4
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=99.37 E-value=8.1e-13 Score=129.89 Aligned_cols=129 Identities=20% Similarity=0.249 Sum_probs=96.2
Q ss_pred HHHHHHHHHhcCCCCCcccC--CC-CCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCccc
Q 044313 33 RRAVNIFSALQSSHGHWPAD--NS-GPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTM 109 (344)
Q Consensus 33 ~ra~~~L~~~Q~~DG~W~g~--~~-~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~g~s~i 109 (344)
+++++||.++|++||+|.+. ++ .++..+-..+.+++++|..+ ++.++++++||+++||.|||||..++++|+.
T Consensus 145 ~~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~~~----~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~ 220 (377)
T 1n4q_B 145 EACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWS----GMDMKKAISYIRRSMSYDNGLAQGAGLESHG 220 (377)
T ss_dssp HHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCGG----GSCHHHHHHHHHHTBCTTSSBBSSTTSCBCH
T ss_pred HHHHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHhcCCCCCCCCCCCCCCch
Confidence 68999999999999999985 43 33444444566788888632 4568999999999999999999999999999
Q ss_pred cchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcC--CCCCcc---------hHHHHHHHHhCCcC
Q 044313 110 FGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRG--GATGIP---------SWGKTWLSILGVYD 165 (344)
Q Consensus 110 ~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~G--G~~~~~---------~~tk~~LAl~G~~~ 165 (344)
..|..|..+|.++|......+...+.|+.+||.+++ |..+-+ .|.=--|.++|.++
T Consensus 221 g~T~cAlaaL~llg~~~~~~~~~~~~rli~wL~~rQ~gGf~GR~nK~~D~CYSfWv~~~l~iL~~~~ 287 (377)
T 1n4q_B 221 GSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQ 287 (377)
T ss_dssp HHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTBSSSBCSSTTSCCCTTHHHHHHHHHHHTTCGG
T ss_pred hHHHHHHHHHHHhcCcccccchhhHHHHHHHHHhcCCCCcCCCCCcchhHHHHHHHHHHHHHhCCcc
Confidence 999999999999986432100016899999999864 444332 33334556666543
No 5
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.36 E-value=1.9e-12 Score=137.04 Aligned_cols=116 Identities=14% Similarity=0.208 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccCCCCCc-cccHHHHHHHHHhcCCCCCCCH---HHHHHHHHHHHhhccCCCCccc
Q 044313 26 EIATTALRRAVNIFSALQSSHGHWPADNSGPL-FFNTPMVICLYITGHLNIIFST---EHRKEMLRYICNHQNEDGGWGL 101 (344)
Q Consensus 26 ~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~-~~~a~~v~~l~~lg~~~~~~~~---~~~~~~~~~L~~~Q~~DGGWg~ 101 (344)
++...++++|++||.+.|++||+|.+.++.+. +.++..+.+|..+|... ..+ +.++++++||+++|++||||+.
T Consensus 554 ~~~~~~i~rAv~yL~~~Q~~DGsW~g~wg~~~~Y~T~~al~AL~~aG~~~--~~~~~~~~i~rav~~Lls~Q~~DGGWge 631 (732)
T 1w6k_A 554 AEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQTY--RDGTACAEVSRACDFLLSRQMADGGWGE 631 (732)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSCCCCSSBSSHHHHHHHHHHHHHHTTCCC--BTTBCCHHHHHHHHHHHTTCCTTSCCCB
T ss_pred hhhHHHHHHHHHHHHhhcCCCCCccCcCCCccchHHHHHHHHHHHhCCcc--cccchhHHHHHHHHHHHHhcccCCCCCC
Confidence 34578899999999999999999998776443 33444556777777632 112 6799999999999999999996
Q ss_pred c----------cCCCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCCC
Q 044313 102 H----------VEGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGA 147 (344)
Q Consensus 102 ~----------~~g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG~ 147 (344)
. .++.|++++|++|+.||..+|.. +. +.+.|+.+||.+++-.
T Consensus 632 ~~~s~~~~~y~~~~~s~v~~TAwALlALl~ag~~-~~---~~i~r~v~wL~~~Q~~ 683 (732)
T 1w6k_A 632 DFESCEERRYVQSAQSQIHNTCWAMMGLMAVRHP-DI---EAQERGVRCLLEKQLP 683 (732)
T ss_dssp CTHHHHHTSCCBCSSCCHHHHHHHHHHHHHTTCS-CH---HHHHHHHHHHHHHCCT
T ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHcCCC-Ch---HHHHHHHHHHHHhcCC
Confidence 2 24678999999999999999865 43 7899999999987643
No 6
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.36 E-value=2.1e-12 Score=134.68 Aligned_cols=111 Identities=23% Similarity=0.355 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccCCCCCc-cccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCccccc----
Q 044313 29 TTALRRAVNIFSALQSSHGHWPADNSGPL-FFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHV---- 103 (344)
Q Consensus 29 ~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~-~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~---- 103 (344)
..++++|++||.+.|++||+|.+.++.+. +.++..+.+|..+|.. ...+.++++++||+++|++|||||...
T Consensus 465 ~~~i~rai~~L~~~Q~~DGsw~g~wg~~~~y~Ta~~l~aL~~~g~~---~~~~~i~rav~~L~s~Q~~DGgWg~~~~sy~ 541 (631)
T 2sqc_A 465 WKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGID---TREPYIQKALDWVEQHQNPDGGWGEDCRSYE 541 (631)
T ss_dssp SHHHHHHHHHHHHHCCTTSCCCCSSBSSHHHHHHHHHHHHHHTTCC---TTSHHHHHHHHHHHHTCCTTSCCCCCGGGGT
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHHHHHHHHhCCc---ccHHHHHHHHHHHHHhCcCCCCcCCcccccc
Confidence 46789999999999999999988776542 3444455566666642 235689999999999999999998532
Q ss_pred ------CCCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCC
Q 044313 104 ------EGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGG 146 (344)
Q Consensus 104 ------~g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG 146 (344)
.+.|+++.|+.|+.||..+|.. +. +.++||.+||.+++-
T Consensus 542 ~~~~~~~~~s~v~~Ta~ALlaL~~ag~~-~~---~~i~rav~wL~~~Q~ 586 (631)
T 2sqc_A 542 DPAYAGKGASTPSQTAWALMALIAGGRA-ES---EAARRGVQYLVETQR 586 (631)
T ss_dssp CGGGTTCSSCCHHHHHHHHHHHHHTTCS-SS---HHHHHHHHHHHHHCC
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHcCCC-Ch---HHHHHHHHHHHhccC
Confidence 2678999999999999999986 44 789999999998764
No 7
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=99.36 E-value=1.7e-12 Score=125.54 Aligned_cols=106 Identities=18% Similarity=0.246 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhcCCCCCcccCCCC--CccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCccc
Q 044313 32 LRRAVNIFSALQSSHGHWPADNSG--PLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTM 109 (344)
Q Consensus 32 i~ra~~~L~~~Q~~DG~W~g~~~~--~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~g~s~i 109 (344)
++++++||.+.|++||+|.+...+ .+..+...+.++.++|..+ .+.++++++||+++|++|||||..++.+|+.
T Consensus 116 ~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~~ty~Al~~L~llg~~~----~~~~~k~v~~L~s~Q~~dGGfg~~pg~esh~ 191 (331)
T 3dss_B 116 VDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLD----AINVEKAIEFVLSCMNFDGGFGCRPGSESHA 191 (331)
T ss_dssp HHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGG----GSCHHHHHHHHHTTBCTTSCBCSSTTCCCCH
T ss_pred HHHHHHHHhccCCCCCCEecccCCCCchHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhCcCCCCcCCCCCCCCcH
Confidence 689999999999999999986333 2333444566788888643 3468999999999999999999999999999
Q ss_pred cchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcC
Q 044313 110 FGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRG 145 (344)
Q Consensus 110 ~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~G 145 (344)
..|.+|..||.++|.... ..+.|+++||.+++
T Consensus 192 ~~T~~al~aL~llg~~~~----~~~~~~~~wL~~~Q 223 (331)
T 3dss_B 192 GQIYCCTGFLAITSQLHQ----VNSDLLGWWLCERQ 223 (331)
T ss_dssp HHHHHHHHHHHHTTCGGG----SCHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHhccccch----hhHHHHHHHHHHhC
Confidence 999999999999997532 34899999999864
No 8
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=99.32 E-value=2.3e-12 Score=128.89 Aligned_cols=111 Identities=17% Similarity=0.208 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHhcCCCCCccc-CCCC-CccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCc
Q 044313 30 TALRRAVNIFSALQSSHGHWPA-DNSG-PLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHS 107 (344)
Q Consensus 30 ~ai~ra~~~L~~~Q~~DG~W~g-~~~~-~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~g~s 107 (344)
..++++++||+++|++||+|.+ ++.. .+..|...|.+|.++|..+ ..+...++++++||.+.|++||||+....|.+
T Consensus 121 ~~~~r~v~~l~s~Q~~dGGf~g~~~~~~~i~~T~~Al~aL~~lg~~~-~~~~i~i~kav~~L~s~Q~~DGsf~~~~~Ge~ 199 (437)
T 2h6f_B 121 IVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEE-AYDIINREKLLQYLYSLKQPDGSFLMHVGGEV 199 (437)
T ss_dssp HHHHHHHHHHHHHBCTTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHH-HHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCB
T ss_pred HHHHHHHHHHHHhCCCCCCcCCccCCCcchhHHHHHHHHHHHhCCcc-cccchHHHHHHHHHHHhCCCCCCeeecCCCCc
Confidence 3568999999999999999998 4432 2334555667788888521 01122489999999999999999998778999
Q ss_pred cccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcC
Q 044313 108 TMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRG 145 (344)
Q Consensus 108 ~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~G 145 (344)
++..|-.|..+|.++|.. +. +.++||.+||++++
T Consensus 200 d~~~ty~A~~~L~llg~~-~~---~~v~k~~~~L~s~Q 233 (437)
T 2h6f_B 200 DVRSAYCAASVASLTNII-TP---DLFEGTAEWIARCQ 233 (437)
T ss_dssp SHHHHHHHHHHHHHTTCC-CT---TTTTTHHHHHHHHB
T ss_pred cchhHHHHHHHHHHhCCC-Ch---HHHHHHHHHHHHcc
Confidence 999999999999999974 44 67999999999864
No 9
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.21 E-value=3.3e-11 Score=117.65 Aligned_cols=131 Identities=12% Similarity=0.139 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcccC--CCCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccc
Q 044313 25 PEIATTALRRAVNIFSALQSSHGHWPAD--NSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLH 102 (344)
Q Consensus 25 ~~~v~~ai~ra~~~L~~~Q~~DG~W~g~--~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~ 102 (344)
.+++.+.|++|+++++++|++||+|..- ..++.++|+..+-++..++.. ...+++.++++++||.++|++||+|+..
T Consensus 86 ~~~~~~~i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~-~~v~~~~i~~a~~~L~~~Q~~dG~~~~~ 164 (367)
T 1hzf_A 86 KDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQ-VGGSPEKLQETSNWLLSQQQADGSFQDP 164 (367)
T ss_dssp HHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGG-TCCCHHHHHHHHHHHGGGBCTTSCBCCS
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCeeccCCCCCcHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhhccCCCcccc
Confidence 4568889999999999999999999431 135667777666566666543 3456788999999999999999999753
Q ss_pred cC------------CCccccchHHHHHHHHHcCCC-C----------CCCCchHHHHHHHHHHHc--CCCCCcchHHHHH
Q 044313 103 VE------------GHSTMFGTVFNYICMRLLGEG-P----------DGGENSGCTRARKWILDR--GGATGIPSWGKTW 157 (344)
Q Consensus 103 ~~------------g~s~i~~T~~ay~AL~l~G~~-~----------~~~~~p~m~rAr~~Il~~--GG~~~~~~~tk~~ 157 (344)
-. ++++++.|+.++.||...|.. + .+ +.+.||.+||.++ .. ..+.++|-.
T Consensus 165 ~~~~~~~~~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~---~~i~ra~~yL~~~~~~~--~~~~y~~Al 239 (367)
T 1hzf_A 165 CPVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVE---ASISKASSFLGEKASAG--LLGAHAAAI 239 (367)
T ss_dssp SCCSCGGGGGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHH---HHHHHHHHHHHHHHHHT--CCCHHHHHH
T ss_pred cccccccccCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhH---HHHHHHHHHHHHhhhcc--cCCHHHHHH
Confidence 11 246788999999999887742 1 12 5799999999876 33 245677766
Q ss_pred HHHh
Q 044313 158 LSIL 161 (344)
Q Consensus 158 LAl~ 161 (344)
+|..
T Consensus 240 ~ayA 243 (367)
T 1hzf_A 240 TAYA 243 (367)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 10
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=99.16 E-value=6.5e-11 Score=119.86 Aligned_cols=115 Identities=13% Similarity=0.118 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCcc--ccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCccc-
Q 044313 25 PEIATTALRRAVNIFSALQSSHGHWPADNSGPLF--FNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGL- 101 (344)
Q Consensus 25 ~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~--~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~- 101 (344)
.++++..++++++||.++|++||+|.+...|... .+-..+.++.++|.. +++.++++++||+++|+.|||||.
T Consensus 162 ~~~Id~~r~k~v~fL~slQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~----~~~~v~kav~fI~scQn~DGGfGe~ 237 (520)
T 3q7a_B 162 WKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDII----TPELLHNVDKFVSACQTYEGGFACA 237 (520)
T ss_dssp HHHHHHTHHHHHHHHHHHBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCC----CHHHHTTHHHHHHTTBCTTSSBCSC
T ss_pred hhhhhhHHHHHHHHHHHHhCCCCCEecCCCCCchHHHHHHHHHHHHHcCCC----ChHHHHHHHHHHHHhcCCCCCccCc
Confidence 4556667889999999999999999996334333 333345568888863 367899999999999999999999
Q ss_pred ----------------------ccCCCccccchHHHHHHHHHcCCCC-----CCCCchHHHHHHHHHHHcCC
Q 044313 102 ----------------------HVEGHSTMFGTVFNYICMRLLGEGP-----DGGENSGCTRARKWILDRGG 146 (344)
Q Consensus 102 ----------------------~~~g~s~i~~T~~ay~AL~l~G~~~-----~~~~~p~m~rAr~~Il~~GG 146 (344)
.+++++.--.|-.|..||.++|.-+ +. -.+.+-.+||..+++
T Consensus 238 s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~---~d~~~l~~WL~~RQ~ 306 (520)
T 3q7a_B 238 SFPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLS---IDANAALRWTVLQQG 306 (520)
T ss_dssp EEEEC------------CCSEEEECSCCCHHHHHHHHHHHHHHHTSCCTTCSCC---CCHHHHHHHHHHTBC
T ss_pred cccccccccccccccccccccCCCCCccchhHHHHHHHHHHHhccccccccccc---cCHHHHHHHHHHhCC
Confidence 6678888888888999999998732 22 348899999998775
No 11
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=99.13 E-value=6.6e-11 Score=114.39 Aligned_cols=106 Identities=17% Similarity=0.211 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhcCCCCCcccCCCCC--ccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccccCCCccc
Q 044313 32 LRRAVNIFSALQSSHGHWPADNSGP--LFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHSTM 109 (344)
Q Consensus 32 i~ra~~~L~~~Q~~DG~W~g~~~~~--~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~g~s~i 109 (344)
.+++++|+++.|++||+|.+..+.. +..|...|.+|..++..+ ...++++++||.+.|++||||+..+.|++++
T Consensus 68 r~~~i~~l~s~Q~~dGGF~g~~g~~~~l~~Ty~Al~~L~~l~~~~----~id~~k~~~fL~~~Q~~DGsf~~~~~ge~d~ 143 (331)
T 3dss_B 68 KEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIH----VINVDKVVAYVQSLQKEDGSFAGDIWGEIDT 143 (331)
T ss_dssp HHHHHHHHHHTBCTTSCBBSSTTSCBCHHHHHHHHHHHHHTTCGG----GSCHHHHHHHHHHTBCTTSCBBSSTTCCBCH
T ss_pred HHHHHHHHhhhcCCCCCcCCCCCCCccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHhccCCCCCCEecccCCCCch
Confidence 3679999999999999999865433 233334456677776422 2348999999999999999999877888999
Q ss_pred cchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcC
Q 044313 110 FGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRG 145 (344)
Q Consensus 110 ~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~G 145 (344)
..|..|..+|.++|.. +. +.++|+.+||++.+
T Consensus 144 ~~ty~Al~~L~llg~~-~~---~~~~k~v~~L~s~Q 175 (331)
T 3dss_B 144 RFSFCAVATLALLGKL-DA---INVEKAIEFVLSCM 175 (331)
T ss_dssp HHHHHHHHHHHHHTCG-GG---SCHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHhcCCC-CH---HHHHHHHHHHHHhC
Confidence 9999999999999984 33 57999999999864
No 12
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.12 E-value=3.8e-10 Score=105.54 Aligned_cols=131 Identities=9% Similarity=0.075 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccc--CCCCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh-hccCCCCccc
Q 044313 25 PEIATTALRRAVNIFSALQSSHGHWPA--DNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICN-HQNEDGGWGL 101 (344)
Q Consensus 25 ~~~v~~ai~ra~~~L~~~Q~~DG~W~g--~~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~-~Q~~DGGWg~ 101 (344)
.+++.+.|++|++++++.|++||+|.. ...++..+|+..+..+..++... .++++.++++++||.+ +|++||+|..
T Consensus 33 ~~~~~~~i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~-~v~~~~i~~a~~~L~~~~Q~~dG~f~~ 111 (277)
T 1qqf_A 33 RQEALELIKKGYTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLI-AIDSQVLCGAVKWLILEKQKPDGVFQE 111 (277)
T ss_dssp HHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTS-CCCHHHHHHHHHHHHHHHBCTTSCBCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhccCCCCCccC
Confidence 457888899999999999999999964 23466788887776776665432 4667889999999995 9999999964
Q ss_pred ccC--------C-----CccccchHHHHHHHHHc------CCCCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 044313 102 HVE--------G-----HSTMFGTVFNYICMRLL------GEGPDGGENSGCTRARKWILDRGGATGIPSWGKTWLSI 160 (344)
Q Consensus 102 ~~~--------g-----~s~i~~T~~ay~AL~l~------G~~~~~~~~p~m~rAr~~Il~~GG~~~~~~~tk~~LAl 160 (344)
.-+ + +++++.|+.+..||... |.++.+ +.+.||.+||.++..- ....|++..+|.
T Consensus 112 ~~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~---~~i~~A~~~L~~~~~~-~~~~y~~a~~ay 185 (277)
T 1qqf_A 112 DGPVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLP---GSINKAGEYLEASYLN-LQRPYTVAIAGY 185 (277)
T ss_dssp SSCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHH---HHHHHHHHHHHHHHTT-CCCHHHHHHHHH
T ss_pred CccccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchH---HHHHHHHHHHHHHhcc-CCCHHHHHHHHH
Confidence 221 1 34577799999999888 555555 8999999999986332 134577755554
No 13
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.07 E-value=7.7e-10 Score=105.29 Aligned_cols=131 Identities=12% Similarity=0.097 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccc--CCCCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh-hccCCCCccc
Q 044313 25 PEIATTALRRAVNIFSALQSSHGHWPA--DNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICN-HQNEDGGWGL 101 (344)
Q Consensus 25 ~~~v~~ai~ra~~~L~~~Q~~DG~W~g--~~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~-~Q~~DGGWg~ 101 (344)
.+++.+.|++|++++++.|++||+|.. ...++..+|+..+..+..++... .++++.++++++||.+ +|++||+|..
T Consensus 49 ~~~~~~~i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~-~v~~~~i~~a~~~L~~~~Q~~dGsf~~ 127 (310)
T 2wy7_A 49 RQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLI-AIDSQVLCGAVKWLILEKQKPDGVFQE 127 (310)
T ss_dssp HHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTS-CCCHHHHHHHHHHHHHHHBCTTSCBCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhcCCCCcccc
Confidence 456788899999999999999999964 23466778887776666665432 4667889999999995 9999999964
Q ss_pred ccC--------C-----CccccchHHHHHHHHHc------CCCCCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 044313 102 HVE--------G-----HSTMFGTVFNYICMRLL------GEGPDGGENSGCTRARKWILDRGGATGIPSWGKTWLSI 160 (344)
Q Consensus 102 ~~~--------g-----~s~i~~T~~ay~AL~l~------G~~~~~~~~p~m~rAr~~Il~~GG~~~~~~~tk~~LAl 160 (344)
.-+ + +++++.|+.+..||... |.+..+ +.++||.+||.++..- .-..|++..+|.
T Consensus 128 ~~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~---~~i~~A~~~L~~~~~~-~~~~y~~a~~ay 201 (310)
T 2wy7_A 128 DAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLP---GSITKAGDFLEANYMN-LQRSYTVAIAGY 201 (310)
T ss_dssp SSCCSCGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHH---HHHHHHHHHHHHHGGG-CCCHHHHHHHHH
T ss_pred CCCccCHhhcCCcccccccccchHHHHHHHHHhcccccccCCcchH---HHHHHHHHHHHHHhhc-cCCHHHHHHHHH
Confidence 221 1 34577799999999888 555555 8999999999986432 134566655444
No 14
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=98.85 E-value=9.3e-09 Score=116.07 Aligned_cols=128 Identities=13% Similarity=0.136 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCcccC------CCCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcc
Q 044313 27 IATTALRRAVNIFSALQSSHGHWPAD------NSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWG 100 (344)
Q Consensus 27 ~v~~ai~ra~~~L~~~Q~~DG~W~g~------~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg 100 (344)
++..-|++|++++++.|++||+|..- ..++.++||..+-.+..++.. ..+++..++++++||.++|++||+|.
T Consensus 980 ~a~~~i~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~-~~v~~~~l~~a~~wL~~~Q~~dG~f~ 1058 (1451)
T 4acq_A 980 KAIGYLNTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAY-IFIDEAHITQALIWLSQRQKDNGCFR 1058 (1451)
T ss_dssp HHHHHHHHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTT-SCCCTHHHHHHHHHHHHTEETTTEEC
T ss_pred HHHHHHHHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhh-cccCHHHHHHHHHHHHhhcccCCccc
Confidence 34555789999999999999999742 347788888776666555432 24567889999999999999999996
Q ss_pred cc-----c---CC-CccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHc-C----CCCCcchHHHHHH
Q 044313 101 LH-----V---EG-HSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDR-G----GATGIPSWGKTWL 158 (344)
Q Consensus 101 ~~-----~---~g-~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~-G----G~~~~~~~tk~~L 158 (344)
.. . +| +++++.|+.++.||..+|.+..+ +.++||.+||.++ . |..+.+.+++..+
T Consensus 1059 ~~g~~~~~~m~gg~~~~~~lTAyvl~aL~~~g~~~~~---~~i~~A~~~L~~~~~~~~~~~~~~~~y~~All 1127 (1451)
T 4acq_A 1059 SSGSLLNNAIKGGVEDEVTLSAYITIALLEIPLTVTH---PVVRNALFCLESAWKTAQEGDHGSHVYTKALL 1127 (1451)
T ss_dssp CCCCCSCGGGCCSCSCHHHHHHHHHHHHHHTTCCTTC---HHHHHHHHHHHHHHHHHTSSCSSSTHHHHHHH
T ss_pred ccCcccchhhcCCCCCCccchHHHHHHHHHcCCCCCC---HHHHHHHHHHHHhhhhcccccccCChHHHHHH
Confidence 31 1 12 36788999999999999988776 9999999999976 2 2223446666443
No 15
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=98.80 E-value=1.1e-08 Score=103.65 Aligned_cols=115 Identities=18% Similarity=0.193 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhcCCCCCcccCC----CCCccccHHHHHHHHHhcCCC--CCCCHHH--HHHHHHHHHhhccCCCCcccc
Q 044313 31 ALRRAVNIFSALQSSHGHWPADN----SGPLFFNTPMVICLYITGHLN--IIFSTEH--RKEMLRYICNHQNEDGGWGLH 102 (344)
Q Consensus 31 ai~ra~~~L~~~Q~~DG~W~g~~----~~~~~~~a~~v~~l~~lg~~~--~~~~~~~--~~~~~~~L~~~Q~~DGGWg~~ 102 (344)
-.+++++|+++.|++||.|.+-- ...+..|...|.+|.++|... ..++.-. ++++++||.+.|++||||...
T Consensus 110 ~~~~~I~~Ils~Q~~dGGFgg~p~~~~~~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g~ 189 (520)
T 3q7a_B 110 TKDRVVSTLLHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVC 189 (520)
T ss_dssp HHHHHHHHHHTTBCTTSSBCSSCTTTSCCCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCBBSS
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCCCCCEecC
Confidence 35678999999999999998743 233445555677888888531 0121223 789999999999999999876
Q ss_pred cCCCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHc----CCCCC
Q 044313 103 VEGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDR----GGATG 149 (344)
Q Consensus 103 ~~g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~----GG~~~ 149 (344)
..|+.++..|-.|..+|.++|.. +. +.++||.+||++. ||...
T Consensus 190 ~wGe~Dir~TY~Al~~L~lLg~~-~~---~~v~kav~fI~scQn~DGGfGe 236 (520)
T 3q7a_B 190 EGGEVDVRGTYCLLVVATLLDII-TP---ELLHNVDKFVSACQTYEGGFAC 236 (520)
T ss_dssp TTCCBCHHHHHHHHHHHHHHTCC-CH---HHHTTHHHHHHTTBCTTSSBCS
T ss_pred CCCCchHHHHHHHHHHHHHcCCC-Ch---HHHHHHHHHHHHhcCCCCCccC
Confidence 67899999999999999999983 33 7899999999997 45544
No 16
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=98.80 E-value=5.6e-09 Score=102.57 Aligned_cols=107 Identities=17% Similarity=0.141 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhcC---------CCCCcccCCC-------------------CCccccHHHHHHHHHhcCCCCCCCHHHHH
Q 044313 32 LRRAVNIFSALQS---------SHGHWPADNS-------------------GPLFFNTPMVICLYITGHLNIIFSTEHRK 83 (344)
Q Consensus 32 i~ra~~~L~~~Q~---------~DG~W~g~~~-------------------~~~~~~a~~v~~l~~lg~~~~~~~~~~~~ 83 (344)
.+++++|++++|+ +||.|.+-.. +.+..|...|.+|.++|.. .+...++
T Consensus 69 ~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~---~~~id~~ 145 (377)
T 1n4q_B 69 KDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDD---LSRVDKE 145 (377)
T ss_dssp HHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCC---STTSCHH
T ss_pred HHHHHHHHHHhcCCccccccCCCCCccCCCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCcc---cchhhHH
Confidence 6789999999999 6899987321 2233444455667777742 2223468
Q ss_pred HHHHHHHhhccCCCCcccc-cCCCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcC
Q 044313 84 EMLRYICNHQNEDGGWGLH-VEGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRG 145 (344)
Q Consensus 84 ~~~~~L~~~Q~~DGGWg~~-~~g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~G 145 (344)
++++||.+.|++||||.-. ..|+.++..|-.|..+|.++|.. ++ +.++||.+||++.+
T Consensus 146 ~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~~-~~---~~v~ka~~fL~scQ 204 (377)
T 1n4q_B 146 ACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNW-SG---MDMKKAISYIRRSM 204 (377)
T ss_dssp HHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCG-GG---SCHHHHHHHHHHTB
T ss_pred HHHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcCC-Ch---HHHHHHHHHHHHhc
Confidence 9999999999999999754 45889999999999999999983 33 67999999999975
No 17
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=98.71 E-value=1.2e-08 Score=97.98 Aligned_cols=117 Identities=16% Similarity=0.097 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccCCC------CC-ccc---cHHHHHHHHHhcCCCCCC------------CHHHHH
Q 044313 26 EIATTALRRAVNIFSALQSSHGHWPADNS------GP-LFF---NTPMVICLYITGHLNIIF------------STEHRK 83 (344)
Q Consensus 26 ~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~------~~-~~~---~a~~v~~l~~lg~~~~~~------------~~~~~~ 83 (344)
++.++|++||++||+++|.+||.|+.-+. .- .|- ++..+.+|..++.....+ ..+.++
T Consensus 93 ~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpd~~~Yl~~IpFnDDvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~ 172 (332)
T 1gxm_A 93 TKYRDAVRKAANFLVNSQYSTGALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVT 172 (332)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTSCCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCCCCCccccCCCcccccccCCcchHHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHH
Confidence 46789999999999999999999986321 11 122 233344455554211111 235699
Q ss_pred HHHHHHHhhccCCCCccc-----ccCCCc-----------cccchHHHHHHHHHcCCCCCCCCch----HHHHHHHHHHH
Q 044313 84 EMLRYICNHQNEDGGWGL-----HVEGHS-----------TMFGTVFNYICMRLLGEGPDGGENS----GCTRARKWILD 143 (344)
Q Consensus 84 ~~~~~L~~~Q~~DGGWg~-----~~~g~s-----------~i~~T~~ay~AL~l~G~~~~~~~~p----~m~rAr~~Il~ 143 (344)
|+++||++.|.+||||-- |..+.. .+++..-+-+...+++.+. + | ++++|++||.+
T Consensus 173 Rgid~Llk~Qe~dggw~g~Wg~qydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~-~---~~v~~aI~~Av~WL~~ 248 (332)
T 1gxm_A 173 KGTDYILKAQWKQNGVLTVWCAQHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQ-T---AEIEQAVRAGVAWFNS 248 (332)
T ss_dssp HHHHHHHHHSCEETTEECCCCSEECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCC-C---HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhCccCCCcCeeccccccccccccccccccccchhHHHHHHHHHHhccCCC-C---HHHHHHHHHHHHHHHh
Confidence 999999999999998731 222211 3444444444445667765 4 7 79999999998
Q ss_pred cCC
Q 044313 144 RGG 146 (344)
Q Consensus 144 ~GG 146 (344)
++=
T Consensus 249 ~q~ 251 (332)
T 1gxm_A 249 PRT 251 (332)
T ss_dssp TTT
T ss_pred ccc
Confidence 763
No 18
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=98.55 E-value=7.6e-08 Score=94.86 Aligned_cols=118 Identities=14% Similarity=0.040 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccCCCCC-------cccc---HHHHHHHHHhcCCCC---C-------CCHHHHHHH
Q 044313 26 EIATTALRRAVNIFSALQSSHGHWPADNSGP-------LFFN---TPMVICLYITGHLNI---I-------FSTEHRKEM 85 (344)
Q Consensus 26 ~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~-------~~~~---a~~v~~l~~lg~~~~---~-------~~~~~~~~~ 85 (344)
++..+|++||++||+++|.+||.|+.-+.-+ .|-+ +..+.+|..++.... . ...+.++|+
T Consensus 171 ~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L~~~~~~~~~~~~~~~~~~~~~~~av~Rg 250 (408)
T 1r76_A 171 APYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIRTRALEATNAA 250 (408)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHHHHHHHHHHHHHHhccCcccccchhhhhhHHHHHHHH
Confidence 4678999999999999999999997633211 1222 223333444443100 0 113569999
Q ss_pred HHHHHhhccC-CCCccc----ccCCCc-----------cccchHHHHHHHHHcCCCCCCCCch----HHHHHHHHHHHcC
Q 044313 86 LRYICNHQNE-DGGWGL----HVEGHS-----------TMFGTVFNYICMRLLGEGPDGGENS----GCTRARKWILDRG 145 (344)
Q Consensus 86 ~~~L~~~Q~~-DGGWg~----~~~g~s-----------~i~~T~~ay~AL~l~G~~~~~~~~p----~m~rAr~~Il~~G 145 (344)
++||++.|.+ ||.|-- |..|.. .+++..-+-+.+-+++.+..+ | +++||++||.+++
T Consensus 251 i~~Ll~~Qe~~dGsw~rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~---~~~~~aI~~Av~WL~s~Q 327 (408)
T 1r76_A 251 IHCIVETQVVQDGKRLGWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPS---DAVKQAIRGGVAWLNTSV 327 (408)
T ss_dssp HHHHHHHSCEETTEECCCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCC---HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhhcccCCcccchhcccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCC---HHHHHHHHHHHHHHHHhh
Confidence 9999999999 999841 111211 222222222223345555433 5 7999999999987
Q ss_pred C
Q 044313 146 G 146 (344)
Q Consensus 146 G 146 (344)
-
T Consensus 328 ~ 328 (408)
T 1r76_A 328 I 328 (408)
T ss_dssp C
T ss_pred c
Confidence 3
No 19
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=98.51 E-value=2.5e-07 Score=86.29 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHH-hcCCCCCcccCCCC---------------CccccHHHHHHHHHhcCC---CCCCCHHHHHHHHHHH
Q 044313 29 TTALRRAVNIFSA-LQSSHGHWPADNSG---------------PLFFNTPMVICLYITGHL---NIIFSTEHRKEMLRYI 89 (344)
Q Consensus 29 ~~ai~ra~~~L~~-~Q~~DG~W~g~~~~---------------~~~~~a~~v~~l~~lg~~---~~~~~~~~~~~~~~~L 89 (344)
...++++++||.+ .|++||+|.+.... .+.+++..+++|.-.|.. ..+..++.++++++||
T Consensus 88 ~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L 167 (277)
T 1qqf_A 88 SQVLCGAVKWLILEKQKPDGVFQEDGPVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYL 167 (277)
T ss_dssp HHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCccCCccccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHH
Confidence 3678999999996 99999999876531 123455555555544320 0111256799999999
Q ss_pred HhhccC---------------------------------CCCcccccCC-CccccchHHHHHHHHHcCCCCCCCCchHHH
Q 044313 90 CNHQNE---------------------------------DGGWGLHVEG-HSTMFGTVFNYICMRLLGEGPDGGENSGCT 135 (344)
Q Consensus 90 ~~~Q~~---------------------------------DGGWg~~~~g-~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~ 135 (344)
.++|++ ||+|....++ .+++.+|++++.||...|.. +.+.
T Consensus 168 ~~~~~~~~~~y~~a~~ayAl~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~~------~~~~ 241 (277)
T 1qqf_A 168 EASYLNLQRPYTVAIAGYALALMNKLEEPYLTKFLNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKDF------DSVP 241 (277)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHTTCCCTTHHHHHHHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTCT------TSHH
T ss_pred HHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCCh------hhHH
Confidence 999885 3433211111 12789999999999998752 3488
Q ss_pred HHHHHHHHcC
Q 044313 136 RARKWILDRG 145 (344)
Q Consensus 136 rAr~~Il~~G 145 (344)
+..+||.+++
T Consensus 242 ~~v~wL~~qq 251 (277)
T 1qqf_A 242 PVVRWLNDER 251 (277)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHcc
Confidence 9999999973
No 20
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=98.51 E-value=3.5e-07 Score=98.96 Aligned_cols=128 Identities=13% Similarity=0.115 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCccc--CCCCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh-hccCCCCccccc
Q 044313 27 IATTALRRAVNIFSALQSSHGHWPA--DNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICN-HQNEDGGWGLHV 103 (344)
Q Consensus 27 ~v~~ai~ra~~~L~~~Q~~DG~W~g--~~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~-~Q~~DGGWg~~~ 103 (344)
+..+.|++|++.+++.|++||+|.. ...++.++|+..+..+..+... ...++..++++++||.+ +|++||+|...-
T Consensus 296 ~a~~~i~~g~~rll~~Q~~DGsfs~w~~~~~s~wlTAyv~~~l~~a~~~-~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~ 374 (915)
T 2hr0_B 296 GALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNL-IAIDSQVLCGAVKWLILEKQKPDGVFQEDA 374 (915)
T ss_dssp HHHHHHHHHHHHHGGGCCTTTCCBSSSSSCBCHHHHHHHHHHHHTTTTT-SCCCHHHHHHHHHHHHHHHBCTTSCBCCCS
T ss_pred HHHHHHHHHHHHHHHhhcCCCCccccCCCCCcceehHHHHHHHHHhhhc-CCCCHHHHHHHHHHHHHhhccCCCccccCc
Confidence 4556788999999999999999964 2346677888666555555432 24667889999999994 999999995321
Q ss_pred --------CC-----CccccchHHHHHHHHHcCCC------CCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 044313 104 --------EG-----HSTMFGTVFNYICMRLLGEG------PDGGENSGCTRARKWILDRGGATGIPSWGKTWLS 159 (344)
Q Consensus 104 --------~g-----~s~i~~T~~ay~AL~l~G~~------~~~~~~p~m~rAr~~Il~~GG~~~~~~~tk~~LA 159 (344)
+| ++++..|+.++.||...|.. ..+ +.+.||.+||.++-.- ....+++.++|
T Consensus 375 ~~~~~~m~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~---~~i~~A~~yL~~~~~~-~~~~y~~a~la 445 (915)
T 2hr0_B 375 PVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLP---GSITKAGDFLEANYMN-LQRSYTVAIAG 445 (915)
T ss_dssp CCSSSCCCCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHH---HHHHHHHHHHHHHGGG-CCSHHHHHHHH
T ss_pred cccchhhcCCccCccccccccHHHHHHHHHhcccccccCcccch---HHHHHHHHHHHHhhhc-cCCHHHHHHHH
Confidence 11 34577789999999888653 333 6899999999986332 13457776655
No 21
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=98.50 E-value=1.8e-07 Score=88.91 Aligned_cols=111 Identities=10% Similarity=0.110 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHH-hcCCCCCcccCCCC---------------CccccHHHHHHHHHhcCC---CCCCCHHHHHHHHHHH
Q 044313 29 TTALRRAVNIFSA-LQSSHGHWPADNSG---------------PLFFNTPMVICLYITGHL---NIIFSTEHRKEMLRYI 89 (344)
Q Consensus 29 ~~ai~ra~~~L~~-~Q~~DG~W~g~~~~---------------~~~~~a~~v~~l~~lg~~---~~~~~~~~~~~~~~~L 89 (344)
.+++++|++||.+ .|++||+|.+.+.. .+.+++..+++|.-.|.. ..+..++.++++++||
T Consensus 104 ~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L 183 (310)
T 2wy7_A 104 SQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFL 183 (310)
T ss_dssp HHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCccccCCCccCHhhcCCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHH
Confidence 3678999999996 99999999876531 123455555555554320 0111256799999999
Q ss_pred HhhccC-CCCccc--------------------------------ccCC-CccccchHHHHHHHHHcCCCCCCCCchHHH
Q 044313 90 CNHQNE-DGGWGL--------------------------------HVEG-HSTMFGTVFNYICMRLLGEGPDGGENSGCT 135 (344)
Q Consensus 90 ~~~Q~~-DGGWg~--------------------------------~~~g-~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~ 135 (344)
.++|++ +++|++ ..++ .+++.+|++|+.||...|.. +.+.
T Consensus 184 ~~~~~~~~~~y~~a~~ayAL~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~~------~~~~ 257 (310)
T 2wy7_A 184 EANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDF------DFVP 257 (310)
T ss_dssp HHHGGGCCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTCT------TTHH
T ss_pred HHHhhccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCCh------hhHH
Confidence 999885 232221 1111 12788999999999998752 3589
Q ss_pred HHHHHHHHcC
Q 044313 136 RARKWILDRG 145 (344)
Q Consensus 136 rAr~~Il~~G 145 (344)
++.+||.++.
T Consensus 258 ~~v~wL~~qq 267 (310)
T 2wy7_A 258 PVVRWLNEQR 267 (310)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcc
Confidence 9999999873
No 22
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=98.24 E-value=2.7e-06 Score=95.25 Aligned_cols=131 Identities=10% Similarity=0.109 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccc--CCCCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccc
Q 044313 25 PEIATTALRRAVNIFSALQSSHGHWPA--DNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLH 102 (344)
Q Consensus 25 ~~~v~~ai~ra~~~L~~~Q~~DG~W~g--~~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~ 102 (344)
.+++.+.+++|++.++++|++||+|.. ...++.++|+..+-++..+......++++.++++++||.++|++||+|...
T Consensus 867 ~~~~~~~i~~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~~ 946 (1325)
T 2pn5_A 867 IDKATNLLRQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKA 946 (1325)
T ss_dssp HHHHHHHHHHHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCcccc
Confidence 346777799999999999999999964 334677888877666666543323466788999999999999999998431
Q ss_pred c--------CC-CccccchHHHHHHHHHcCCCC-CCCCchHHHHHHHHHHHcCCCCCcchHHHHHH
Q 044313 103 V--------EG-HSTMFGTVFNYICMRLLGEGP-DGGENSGCTRARKWILDRGGATGIPSWGKTWL 158 (344)
Q Consensus 103 ~--------~g-~s~i~~T~~ay~AL~l~G~~~-~~~~~p~m~rAr~~Il~~GG~~~~~~~tk~~L 158 (344)
- ++ .+.+..|+.++.||.-.|... .. .+.++||.+||.++.... -..|++..+
T Consensus 947 ~~~~~~~~~g~~~~~~~~tayvl~aL~~~g~~~~~~--~~~i~~a~~~L~~~~~~~-~~~~~~a~~ 1009 (1325)
T 2pn5_A 947 GAEYHKEMQGGLRNGVALTSYVLMALLENDIAKAKH--AEVIQKGMTYLSNQFGSI-NNAYDLSIA 1009 (1325)
T ss_dssp SCCSCHHHHCCSSTTHHHHHHHHHHHHTCHHHHHHT--HHHHHHHHHHHHHHGGGC-CCHHHHHHH
T ss_pred ccccChhhcCcccCCccccHHHHHHHhhCccccccc--HHHHHHHHHHHHHhhccc-CCHHHHHHH
Confidence 1 11 133444555555555444221 11 156889999999864431 345666544
No 23
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=98.24 E-value=3.3e-06 Score=82.20 Aligned_cols=112 Identities=13% Similarity=0.180 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccCCCC--------------CccccHHHHHHHHHhcCCC-CCC-------CHHHHHHHH
Q 044313 29 TTALRRAVNIFSALQSSHGHWPADNSG--------------PLFFNTPMVICLYITGHLN-IIF-------STEHRKEML 86 (344)
Q Consensus 29 ~~ai~ra~~~L~~~Q~~DG~W~g~~~~--------------~~~~~a~~v~~l~~lg~~~-~~~-------~~~~~~~~~ 86 (344)
..++++|++||.+.|++||+|.+.... .+.+|+.++++|.-.|..- ... ..+.+++++
T Consensus 141 ~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~ 220 (367)
T 1hzf_A 141 PEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKAS 220 (367)
T ss_dssp HHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGGGGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCcccccccccccccCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHH
Confidence 578999999999999999999875321 1345566666665555210 000 134689999
Q ss_pred HHHHhh--cc------------------------------------CCCC---ccccc---------------------C
Q 044313 87 RYICNH--QN------------------------------------EDGG---WGLHV---------------------E 104 (344)
Q Consensus 87 ~~L~~~--Q~------------------------------------~DGG---Wg~~~---------------------~ 104 (344)
+||.++ |+ .+|+ |+... .
T Consensus 221 ~yL~~~~~~~~~~~y~~Al~ayAL~l~~~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~s~~~~~~~~~~~~~~~~~~~~ 300 (367)
T 1hzf_A 221 SFLGEKASAGLLGAHAAAITAYALTLTKAPADLRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQ 300 (367)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCEECSSCEECC------------------------C
T ss_pred HHHHHhhhcccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhhcCCCCccCCCCCcccccccccccccccccccCC
Confidence 999876 32 1444 76421 1
Q ss_pred CCc-cccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcC
Q 044313 105 GHS-TMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRG 145 (344)
Q Consensus 105 g~s-~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~G 145 (344)
+.| ++.+|+.|+.||...+ ++. +.+.+..+||.++.
T Consensus 301 ~~s~~vE~TAyaLLall~~~--~~~---~~~~~iv~WL~~qr 337 (367)
T 1hzf_A 301 APALWIETTAYALLHLLLHE--GKA---EMADQASAWLTRQG 337 (367)
T ss_dssp CCHHHHHHHHHHHHHHHHHT--CSS---HHHHHHHHHHHHHT
T ss_pred CccchhHHHHHHHHHHHhcc--Cch---hhhHHHHHHHHhCc
Confidence 233 7999999999998764 234 67899999999873
No 24
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=98.15 E-value=2.7e-06 Score=83.81 Aligned_cols=115 Identities=14% Similarity=0.118 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhcCCCCCccc--CCCC----------------------------------Cccc----cHHHHHHHHH
Q 044313 30 TALRRAVNIFSALQSSHGHWPA--DNSG----------------------------------PLFF----NTPMVICLYI 69 (344)
Q Consensus 30 ~ai~ra~~~L~~~Q~~DG~W~g--~~~~----------------------------------~~~~----~a~~v~~l~~ 69 (344)
.+.++..+.|+.-|.++|.|.- ++.+ ..++ |+..+++|.-
T Consensus 81 ~~A~~iAd~ll~~Q~~~GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL~r 160 (408)
T 1r76_A 81 KAARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQ 160 (408)
T ss_dssp HHHHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccCCCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHHHH
Confidence 4568999999999999999963 1111 1122 3333444433
Q ss_pred hcCC----CCCCCHHHHHHHHHHHHhhccCCCCcccccCCCcc--------ccchHHHHHHHHHcCCC------------
Q 044313 70 TGHL----NIIFSTEHRKEMLRYICNHQNEDGGWGLHVEGHST--------MFGTVFNYICMRLLGEG------------ 125 (344)
Q Consensus 70 lg~~----~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~~g~s~--------i~~T~~ay~AL~l~G~~------------ 125 (344)
+... +.....+.+.|+++||++.|.+||||+-+...... =..|+-++-.|..+|..
T Consensus 161 v~~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L~~~~~~~~~~~~~~~~~~ 240 (408)
T 1r76_A 161 VVSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIR 240 (408)
T ss_dssp HHHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHHHHHHHHHHHHHHhccCcccccchhhh
Confidence 3211 11122456899999999999999999865432111 13567777666666552
Q ss_pred -CCCCCchHHHHHHHHHHHcCCC
Q 044313 126 -PDGGENSGCTRARKWILDRGGA 147 (344)
Q Consensus 126 -~~~~~~p~m~rAr~~Il~~GG~ 147 (344)
... ++++||.+||++.+-.
T Consensus 241 ~~~~---~av~Rgi~~Ll~~Qe~ 260 (408)
T 1r76_A 241 TRAL---EATNAAIHCIVETQVV 260 (408)
T ss_dssp HHHH---HHHHHHHHHHHHHSCE
T ss_pred hhHH---HHHHHHHHHHHHhhcc
Confidence 233 8999999999998754
No 25
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.13 E-value=3.1e-06 Score=83.30 Aligned_cols=109 Identities=13% Similarity=0.163 Sum_probs=82.1
Q ss_pred HHHHHHHHHhcC---C-CCCcc-----c--C------CCCCccccHHHHHHHHHhcCCCCCCC----------HHHHHHH
Q 044313 33 RRAVNIFSALQS---S-HGHWP-----A--D------NSGPLFFNTPMVICLYITGHLNIIFS----------TEHRKEM 85 (344)
Q Consensus 33 ~ra~~~L~~~Q~---~-DG~W~-----g--~------~~~~~~~~a~~v~~l~~lg~~~~~~~----------~~~~~~~ 85 (344)
++..+||.++|+ + ||++. + + -+.++-.+-.++..+++++... ..+ ...++++
T Consensus 118 ~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D~R~~YcA~~i~~lL~~~~-~~~~~~~~~~~~~~id~~~~ 196 (390)
T 3dra_B 118 KKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYDD-NNNNNNREDSNETDIDLISL 196 (390)
T ss_dssp HHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCCHHHHHHHHHHHHHTTCC--------------CCCCHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcchHHHHHHHHHHHHHhCCCc-ccccccccccccccccHHHH
Confidence 467889999998 6 99998 2 1 2344444444455677887532 000 1237999
Q ss_pred HHHHHhhccCCCCcccccCCCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCCC
Q 044313 86 LRYICNHQNEDGGWGLHVEGHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDRGGA 147 (344)
Q Consensus 86 ~~~L~~~Q~~DGGWg~~~~g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG~ 147 (344)
++||++.|+.|||+|..++++|+.-.|-.|..||.++|... ..+.+..+||.+++..
T Consensus 197 ~~~I~~cq~ydGGfg~~p~~EsH~G~TfCalaaL~lL~~~~-----~d~~~l~~WL~~RQ~~ 253 (390)
T 3dra_B 197 QQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLNYPL-----EKLKSTKEWLIHRQVD 253 (390)
T ss_dssp HHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTCCG-----GGCHHHHHHHHTTBCC
T ss_pred HHHHHHhcCCCCCcCCCCCcccccchhHHHHHHHHHhCccc-----ccHHHHHHHHHHcCcc
Confidence 99999999999999999999999888999999999998762 3478889999998864
No 26
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=97.98 E-value=3.4e-05 Score=81.69 Aligned_cols=131 Identities=12% Similarity=0.150 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCccc--CCCCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCccccc
Q 044313 26 EIATTALRRAVNIFSALQSSHGHWPA--DNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLHV 103 (344)
Q Consensus 26 ~~v~~ai~ra~~~L~~~Q~~DG~W~g--~~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~~ 103 (344)
++....+++|++-+++.|++||+|.. ...++.++|+..+-.+..+... ..+++..+.+++.||.++|.+||.|...-
T Consensus 364 ~~a~~~l~~gyqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~~l~~A~~~-i~id~~~i~~a~~wL~~~Q~~~G~f~e~g 442 (767)
T 4fxk_B 364 DHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQ-VGGSPEKLQETSNWLLSQQQADGSFQDPC 442 (767)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHHHHHHTCSS-SSCCHHHHHHHHHHHHHTBCTTSCBCCSS
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCchhHHHHHHHHHHHHhh-cCcchHHHHHHHHHHHHhhhhcccchhcc
Confidence 45566689999999999999999853 4456778888665555554322 24557889999999999999999996421
Q ss_pred --------C----CCccccchHHHHHHHHHcCCCCCCCC--------chHHHHHHHHHHHcCCCCCcchHHHHH
Q 044313 104 --------E----GHSTMFGTVFNYICMRLLGEGPDGGE--------NSGCTRARKWILDRGGATGIPSWGKTW 157 (344)
Q Consensus 104 --------~----g~s~i~~T~~ay~AL~l~G~~~~~~~--------~p~m~rAr~~Il~~GG~~~~~~~tk~~ 157 (344)
+ ..++++-|+.+.+||...|....+.. +..+.||.+||.++-.......+++-.
T Consensus 443 ~~~~~~~~gg~~~~~~~~~ltAyvliaL~e~~~~~~~~~~~~~~~~~~~~i~ka~~~L~~~~~~~~~~~y~~Al 516 (767)
T 4fxk_B 443 PVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKANSFLGEKASAGLLGAHAAAI 516 (767)
T ss_dssp CSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHH
T ss_pred hhcchhhcCCcCCCccchhHHHHHHHHHHhcCCccccchhhhhHhHHHHHHHHHHHHHHHHhhcccCCHHHHHH
Confidence 1 13457778888889876654332200 024788999998764333334566543
No 27
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=97.93 E-value=6.6e-05 Score=85.93 Aligned_cols=129 Identities=12% Similarity=0.154 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCccc--CCCCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH-hhccCCCCcccc
Q 044313 26 EIATTALRRAVNIFSALQSSHGHWPA--DNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYIC-NHQNEDGGWGLH 102 (344)
Q Consensus 26 ~~v~~ai~ra~~~L~~~Q~~DG~W~g--~~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~-~~Q~~DGGWg~~ 102 (344)
++..+.|+.|++-+++.|++||+|.. ...++.++||..+-.+..+... ..+++..++++++||. ++|++||.|...
T Consensus 1042 ~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~-~~v~~~~l~~a~~~L~~~~q~~~g~f~~~ 1120 (1661)
T 2b39_A 1042 QESLELIRKGYTQQLAFRQKSSAYAAFQYRPPSTWLTAYVVKVFALAANL-IAIDSKDLCETVKWLILEKQKPDGIFQED 1120 (1661)
T ss_dssp HHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTT-SCCCHHHHHHHHHHHHHHTBCTTSCBCCC
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCccccCCCCCchhhhHHHHHHHHhhhhc-ccCCHHHHHHHHHHhhHhhCCCCCccccc
Confidence 35566788899999999999999853 3467788998776555555432 2466888999999999 499999999642
Q ss_pred c--------CC-----CccccchHHHHHHHHHcCCC------CCCCCchHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 044313 103 V--------EG-----HSTMFGTVFNYICMRLLGEG------PDGGENSGCTRARKWILDRGGATGIPSWGKTWLS 159 (344)
Q Consensus 103 ~--------~g-----~s~i~~T~~ay~AL~l~G~~------~~~~~~p~m~rAr~~Il~~GG~~~~~~~tk~~LA 159 (344)
. +| ++++.-|+.++.||...|.. ..+ +.+.+|.+||.++=.- ....+++.++|
T Consensus 1121 ~~~~~~~~~gg~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~---~~i~~a~~yL~~~~~~-~~~~y~~A~la 1192 (1661)
T 2b39_A 1121 GPVIHQEMIGGFRDTREKDVSLTAFVLIALHEAKDICEAQVNSLG---RSIAKAGDFLENHYRE-LRRPYTVAIAA 1192 (1661)
T ss_dssp SCCCCTTSCCCTTCCTTSSHHHHHHHHHHHHHTTTTTTTTCSSHH---HHHHHHHHHHHHHTTT-CCSHHHHHHHH
T ss_pred cceechhhcCCccccccCccccHHHHHHHHHhccccccccCcchh---HHHHHHHHHHHHhhhc-cCCHHHHHHHH
Confidence 1 11 12566688888899877643 222 5789999999876221 13456665544
No 28
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=97.89 E-value=3.3e-05 Score=76.36 Aligned_cols=122 Identities=10% Similarity=-0.027 Sum_probs=85.4
Q ss_pred HHHHHHHHhcCCCCCcccCCCCCccccHHHHHHHHHhcCCCC-CCCHHHHHHHH----HHHHhhccCCCCcccccCCCcc
Q 044313 34 RAVNIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNI-IFSTEHRKEML----RYICNHQNEDGGWGLHVEGHST 108 (344)
Q Consensus 34 ra~~~L~~~Q~~DG~W~g~~~~~~~~~a~~v~~l~~lg~~~~-~~~~~~~~~~~----~~L~~~Q~~DGGWg~~~~g~s~ 108 (344)
+.+..|+..|..|+++.|+. .++=++|..++++..++..+. .-..+.+++++ ++|.+.|++||++| |
T Consensus 156 ~~v~~Ll~~~~~~~~~~g~~-~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~~l~~~l~~~Q~~dG~FG-------N 227 (414)
T 2bb6_A 156 SVVGKLLYAVEHKPHLLQDH-VSVDTMAMAGMAFSCLELSNLNPKQRNRINLALKRVQEKILKAQTPEGYFG-------N 227 (414)
T ss_dssp HHHHHHHHHHHSSSCSCCTT-THHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTBCTTSCBS-------S
T ss_pred HHHHHHHHHhhccCcCCCCc-ccccHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhcCCCCcc-------c
Confidence 35667777777777775543 345567777788887764211 11145677777 67777799999985 8
Q ss_pred ccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHc---CCCCCcchHHHHHHHHhCCc
Q 044313 109 MFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDR---GGATGIPSWGKTWLSILGVY 164 (344)
Q Consensus 109 i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~---GG~~~~~~~tk~~LAl~G~~ 164 (344)
++.|++|.-||.++|.++... +-.+.+|+++|++. |+-...-.-..+..|+.|..
T Consensus 228 ~~ST~lA~QAL~~~~~~~~~~-~w~~~~a~~~Ll~q~~dG~F~np~ataQ~lpaL~gkt 285 (414)
T 2bb6_A 228 VYSTPLALQLLMGSLRPSVEL-GTACLKAKAALQASLQHKTFQNPLMISQLLPVLNQKS 285 (414)
T ss_dssp TTTHHHHHHHHTTCSSCCHHH-HHHHHHHHHHHHHHHTTTCCCSHHHHHHHHHHTTTCC
T ss_pred hhhHHHHHHHHHhcCCCcccc-cchHHHHHHHHHHhccCCCCCChHHHHHHHHHhcCCC
Confidence 999999999999998865430 02688899999873 44443335677889998874
No 29
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=97.89 E-value=1.2e-05 Score=77.30 Aligned_cols=111 Identities=12% Similarity=0.150 Sum_probs=71.6
Q ss_pred HHHHHHHHhcCCCCCccc--CCC---------CCccc----cHHHHHHHHHhcC-CCCCCCHHHHHHHHHHHHhhccCCC
Q 044313 34 RAVNIFSALQSSHGHWPA--DNS---------GPLFF----NTPMVICLYITGH-LNIIFSTEHRKEMLRYICNHQNEDG 97 (344)
Q Consensus 34 ra~~~L~~~Q~~DG~W~g--~~~---------~~~~~----~a~~v~~l~~lg~-~~~~~~~~~~~~~~~~L~~~Q~~DG 97 (344)
...+.++.-|.++|.|.- ++. ...++ |+..+++|.-+.. .+...-.+.++|+++||++.|.+||
T Consensus 35 ~~Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nG 114 (332)
T 1gxm_A 35 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTG 114 (332)
T ss_dssp GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCC
Confidence 347899999999999975 221 12233 2334444433311 0001124569999999999999999
Q ss_pred CcccccCCCccc--------cchHHHHHHHHHcCC---------------CCCCCCchHHHHHHHHHHHcCCC
Q 044313 98 GWGLHVEGHSTM--------FGTVFNYICMRLLGE---------------GPDGGENSGCTRARKWILDRGGA 147 (344)
Q Consensus 98 GWg~~~~g~s~i--------~~T~~ay~AL~l~G~---------------~~~~~~~p~m~rAr~~Il~~GG~ 147 (344)
||+-+....... ..|+-++-.|..+|. .... ++++||.+||++.+-.
T Consensus 115 GWpqFdpd~~~Yl~~IpFnDDvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~---~av~Rgid~Llk~Qe~ 184 (332)
T 1gxm_A 115 ALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFK---TAVTKGTDYILKAQWK 184 (332)
T ss_dssp CCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHH---HHHHHHHHHHHHHSCE
T ss_pred CccccCCCcccccccCCcchHHHHHHHHHHHHHHhccCCccccccccchhhhhH---HHHHHHHHHHHHhhCc
Confidence 999764422111 367777777777753 1233 8999999999997643
No 30
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=97.83 E-value=7.2e-05 Score=73.62 Aligned_cols=116 Identities=13% Similarity=0.104 Sum_probs=85.2
Q ss_pred HHHHHHHHHhcCCCCCcccCCCCCccccHHHHHHHHHhcC---CCCCCC-----HHHHHHHHHHHHhhccCCCCcccccC
Q 044313 33 RRAVNIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGH---LNIIFS-----TEHRKEMLRYICNHQNEDGGWGLHVE 104 (344)
Q Consensus 33 ~ra~~~L~~~Q~~DG~W~g~~~~~~~~~a~~v~~l~~lg~---~~~~~~-----~~~~~~~~~~L~~~Q~~DGGWg~~~~ 104 (344)
.+.++-|...|..||+|. ++=++|..++++..++. .+.... ...+++++++|.+.|++||++|
T Consensus 133 ~~~v~kLl~~~~~~g~~~-----sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~~~~l~~~q~~dG~fG---- 203 (399)
T 2pmv_A 133 LPIAVRFAKTLLANSSPF-----NVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDNGIIG---- 203 (399)
T ss_dssp HHHHHHHHHHHHHCCSCC-----CHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHHHHHHHHHTTSBCTTSCBS----
T ss_pred HHHHHHHHHHHHccCCcc-----cchHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHhhcCCCccc----
Confidence 456677777787776432 45567777788877765 221111 2457888888888999999995
Q ss_pred CCccccchHHHHHHHHHcCCCCCCCCch-HHHHHHHHHHH---cCCCCCcchHHHHHHHHhCC
Q 044313 105 GHSTMFGTVFNYICMRLLGEGPDGGENS-GCTRARKWILD---RGGATGIPSWGKTWLSILGV 163 (344)
Q Consensus 105 g~s~i~~T~~ay~AL~l~G~~~~~~~~p-~m~rAr~~Il~---~GG~~~~~~~tk~~LAl~G~ 163 (344)
+++.|.+|.-||..+|..+.. + .+.+|.+||++ .|+-...-.-..+..||.|.
T Consensus 204 ---n~yST~LA~QAL~~~~~~~~~---~W~c~~al~~l~~q~~~G~F~np~~taQilPaL~~k 260 (399)
T 2pmv_A 204 ---DIYSTGLAMQALSVTPEPSKK---EWNCKKTTDMILNEIKQGKFHNPMSIAQILPSLKGK 260 (399)
T ss_dssp ---SHHHHHHHHHHHHHCSSCCSS---CCCHHHHHHHHHHHHTTTTTCSHHHHHHHHHHHTTC
T ss_pred ---ccccHHHHHHHHHhcCCCccc---cccHHHHHHHHHHHhhCCCcCCHHHHHHHHHHhcCC
Confidence 899999999999999987554 5 79999999986 35554434667788898887
No 31
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=97.61 E-value=9.2e-05 Score=80.07 Aligned_cols=111 Identities=13% Similarity=0.161 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHH-hcCCCCCcccCCC-------C--------CccccHHHHHHHHHhcCC---CCCCCHHHHHHHHHHH
Q 044313 29 TTALRRAVNIFSA-LQSSHGHWPADNS-------G--------PLFFNTPMVICLYITGHL---NIIFSTEHRKEMLRYI 89 (344)
Q Consensus 29 ~~ai~ra~~~L~~-~Q~~DG~W~g~~~-------~--------~~~~~a~~v~~l~~lg~~---~~~~~~~~~~~~~~~L 89 (344)
..++++|++||.+ .|.+||+|.+... + ...+++..+++|.-.|.. ..+-..+.++++++||
T Consensus 349 ~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL 428 (915)
T 2hr0_B 349 SQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFL 428 (915)
T ss_dssp HHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCCCCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCccccCccccchhhcCCccCccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHH
Confidence 4689999999995 9999999976432 1 233456555666655532 0111245789999999
Q ss_pred HhhccC---------------------------------CCC-cccccCCCccccchHHHHHHHHHcCCCCCCCCchHHH
Q 044313 90 CNHQNE---------------------------------DGG-WGLHVEGHSTMFGTVFNYICMRLLGEGPDGGENSGCT 135 (344)
Q Consensus 90 ~~~Q~~---------------------------------DGG-Wg~~~~g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~ 135 (344)
.++|+. +|. |....+..+++.+|++|+.||...|.. ..+.
T Consensus 429 ~~~~~~~~~~y~~a~layAL~l~g~~a~~~l~~L~~~~~~~~~w~~~~~~~~~ve~TayaLlall~~~~~------~~~~ 502 (915)
T 2hr0_B 429 EANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDF------DFVP 502 (915)
T ss_dssp HHHGGGCCSHHHHHHHHHHHHTTTCCCHHHHHHHHHTSBTTTBCCCSSCHHHHHHHHHHHHHHHHHTTCT------TTHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCCCCCCCCccchHHHHHHHHHHHhcCCh------hhHH
Confidence 998765 232 432111113788999999999998752 3478
Q ss_pred HHHHHHHHcC
Q 044313 136 RARKWILDRG 145 (344)
Q Consensus 136 rAr~~Il~~G 145 (344)
++.+||.++.
T Consensus 503 ~~v~wL~~qq 512 (915)
T 2hr0_B 503 PVVRWLNEQR 512 (915)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHhcc
Confidence 8899999864
No 32
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=97.58 E-value=0.00022 Score=81.72 Aligned_cols=129 Identities=10% Similarity=0.101 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcc--cCCCCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh-hccCCCCcccc
Q 044313 26 EIATTALRRAVNIFSALQSSHGHWP--ADNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICN-HQNEDGGWGLH 102 (344)
Q Consensus 26 ~~v~~ai~ra~~~L~~~Q~~DG~W~--g~~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~-~Q~~DGGWg~~ 102 (344)
++..+.++.|.+-+++.|++||+|. +...++.++||..+-.+..+.... .+++..++++++||.+ +|++||.|...
T Consensus 1043 ~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~-~v~~~~l~~a~~~L~~~~q~~~g~f~~~ 1121 (1676)
T 3cu7_A 1043 QKLKKKLKEGMLSIMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYV-EQNQNSICNSLLWLVENYQLDNGSFKEN 1121 (1676)
T ss_dssp HHHHHHHHHHHHHGGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHHSBCTTSCBCCC
T ss_pred HHHHHHHHHHHHHHhhccCCCCCccccCCCCCcEEEeHHHHHHHHHHHhcc-cCCHHHHHHHHHHHHHhhCCCCCcccCC
Confidence 3455678888999999999999985 345677889987765555553321 4668889999999999 99999998532
Q ss_pred c--------CC------CccccchHHHHHHHHHcCCC----CCCCCchHHHHHHHHHHHc-CCCCCcchHHHHHHHH
Q 044313 103 V--------EG------HSTMFGTVFNYICMRLLGEG----PDGGENSGCTRARKWILDR-GGATGIPSWGKTWLSI 160 (344)
Q Consensus 103 ~--------~g------~s~i~~T~~ay~AL~l~G~~----~~~~~~p~m~rAr~~Il~~-GG~~~~~~~tk~~LAl 160 (344)
. +| ++++.-|+.++.||...|.. ..+ +.+.+|.+||.++ ... ...+++.++|.
T Consensus 1122 ~~~~~~~~~gg~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~---~~i~~a~~yL~~~~~~~--~~~y~~A~lA~ 1193 (1676)
T 3cu7_A 1122 SQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVKID---TALIKADNFLLENTLPA--QSTFTLAISAY 1193 (1676)
T ss_dssp SSCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHTGGGSCCHHHH---HHHHHHHHHHHHHHSSC--SCHHHHHHHHH
T ss_pred ccccchhhcCCcccccccCccccHHHHHHHHHhcccccCCcccH---HHHHHHHHHHHHhhhcc--CCHHHHHHHHH
Confidence 1 11 12566778888888777532 223 6789999999875 322 34577766553
No 33
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=97.44 E-value=1.9e-05 Score=90.11 Aligned_cols=116 Identities=13% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCccc--CCCCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh-hccCCCCcccc
Q 044313 26 EIATTALRRAVNIFSALQSSHGHWPA--DNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICN-HQNEDGGWGLH 102 (344)
Q Consensus 26 ~~v~~ai~ra~~~L~~~Q~~DG~W~g--~~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~-~Q~~DGGWg~~ 102 (344)
++...-|+.|.+-+++.|++||+|.. ...++.++||..+-.+..+...-..+++..+.++++||.+ +|++||+|...
T Consensus 1026 ~ka~~~i~~Gyqr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~ 1105 (1642)
T 3prx_B 1026 TEAVNQIVTGYAQQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKEN 1105 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeecCCCCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCccccc
Confidence 34666788999999999999999753 3457788898665444333221112557789999999998 89999999542
Q ss_pred -----c---CC----CccccchHHHHHHHHHcCCC------CCCCCchHHHHHHHHHHHc
Q 044313 103 -----V---EG----HSTMFGTVFNYICMRLLGEG------PDGGENSGCTRARKWILDR 144 (344)
Q Consensus 103 -----~---~g----~s~i~~T~~ay~AL~l~G~~------~~~~~~p~m~rAr~~Il~~ 144 (344)
. || .++++-|+.+++||.-.|.. ..+ +.+.||..||.++
T Consensus 1106 ~~v~~~~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~---~~i~~a~~~L~~~ 1162 (1642)
T 3prx_B 1106 APVLSGTMQGGIQGAEEEVYLTAFILVALLESKTICNDYVNSLD---SSIKKATNYLLKK 1162 (1642)
T ss_dssp ------------------------------------------------------------
T ss_pred ccccchhccCCccCCCCcccchHHHHHHHHhcccccccccccch---HHHHHHHHHHHHh
Confidence 1 12 35789999999999887653 123 6899999999865
No 34
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.38 E-value=0.00034 Score=68.79 Aligned_cols=118 Identities=16% Similarity=0.185 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcCCC----CCcccCC----------CCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhcc---
Q 044313 32 LRRAVNIFSALQSSH----GHWPADN----------SGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQN--- 94 (344)
Q Consensus 32 i~ra~~~L~~~Q~~D----G~W~g~~----------~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~--- 94 (344)
.++-++|+.+.|.++ |.+.|.- .+.+..|-..|..|.++|.. .++.-.++++.+||.+.|+
T Consensus 55 ~~~~i~~i~~~q~~~~~~~gGF~g~~~~~~~g~~~~~~hl~~Ty~Al~~L~ilg~~--~~~~vdr~~i~~~l~~lQ~~~~ 132 (390)
T 3dra_B 55 LIYYRNFIINQFMIENNQIISFRSTHYFQKTNQKYDCPNLSSTLFALYNLLILKSP--YHTIINRKKIMNFLCKCQVKDG 132 (390)
T ss_dssp HHHHHHHHHHHHEEECSSCEEECSSGGGGGSCTTTSCCBHHHHHHHHHHHHHTTCC--GGGTCCHHHHHHHHHHHBCCSS
T ss_pred HHHHHHHHHHHhccccCCCCCcCCCccCCCCCCccCcccHHHHHHHHHHHHHhCch--hhccccHHHHHHHHHHHhCCCC
Confidence 456789999988653 7777652 12233333345667777752 0111237899999999998
Q ss_pred C-CCCccccc-----------CCCccccchHHHHHHHHHcCCCCCC----C-----CchHHHHHHHHHHHc----CCCCC
Q 044313 95 E-DGGWGLHV-----------EGHSTMFGTVFNYICMRLLGEGPDG----G-----ENSGCTRARKWILDR----GGATG 149 (344)
Q Consensus 95 ~-DGGWg~~~-----------~g~s~i~~T~~ay~AL~l~G~~~~~----~-----~~p~m~rAr~~Il~~----GG~~~ 149 (344)
+ |||++.+. +|+.++=.|-.|...+.++|..... . .+--+.++.+||++. ||...
T Consensus 133 ~~dGsF~~~~~~~~~dg~~~~~ge~D~R~~YcA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~ 212 (390)
T 3dra_B 133 INKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSS 212 (390)
T ss_dssp TTTTCBCSEEEEETTTTEEEEESCCCHHHHHHHHHHHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCS
T ss_pred CCCCceeeeccccccccccccCCcchHHHHHHHHHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCC
Confidence 6 99999654 4788888888888889999887610 0 002379999999986 57666
Q ss_pred cc
Q 044313 150 IP 151 (344)
Q Consensus 150 ~~ 151 (344)
.|
T Consensus 213 ~p 214 (390)
T 3dra_B 213 TI 214 (390)
T ss_dssp ST
T ss_pred CC
Confidence 65
No 35
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=97.31 E-value=0.00031 Score=69.49 Aligned_cols=79 Identities=8% Similarity=-0.037 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccccHHHHHHHHHhcCCCCCCCH--HHHHHHHHHHHhhccCCCCccccc
Q 044313 26 EIATTALRRAVNIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNIIFST--EHRKEMLRYICNHQNEDGGWGLHV 103 (344)
Q Consensus 26 ~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~~a~~v~~l~~lg~~~~~~~~--~~~~~~~~~L~~~Q~~DGGWg~~~ 103 (344)
..+..|++....+|.+.|++||+|. +.+.|+..+-+|...|... .. ....++.++|++ |++||+|+
T Consensus 202 ~~i~~al~~l~~~l~~~Q~~dG~FG-----N~~ST~lA~QAL~~~~~~~---~~~~w~~~~a~~~Ll~-q~~dG~F~--- 269 (414)
T 2bb6_A 202 NRINLALKRVQEKILKAQTPEGYFG-----NVYSTPLALQLLMGSLRPS---VELGTACLKAKAALQA-SLQHKTFQ--- 269 (414)
T ss_dssp HHHHHHHHHHHHHHHHTBCTTSCBS-----STTTHHHHHHHHTTCSSCC---HHHHHHHHHHHHHHHH-HHTTTCCC---
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCcc-----chhhHHHHHHHHHhcCCCc---ccccchHHHHHHHHHH-hccCCCCC---
Confidence 4577777777799999999999994 5667887777887777421 12 368899999999 99999994
Q ss_pred CCCccccchHHHHHHHH
Q 044313 104 EGHSTMFGTVFNYICMR 120 (344)
Q Consensus 104 ~g~s~i~~T~~ay~AL~ 120 (344)
+..+|+.++-||.
T Consensus 270 ----np~ataQ~lpaL~ 282 (414)
T 2bb6_A 270 ----NPLMISQLLPVLN 282 (414)
T ss_dssp ----SHHHHHHHHHHTT
T ss_pred ----ChHHHHHHHHHhc
Confidence 6678888888875
No 36
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=97.28 E-value=0.00012 Score=78.25 Aligned_cols=108 Identities=11% Similarity=0.102 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHhcC---CCCCcccCCCCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCCcccc
Q 044313 26 EIATTALRRAVNIFSALQS---SHGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGGWGLH 102 (344)
Q Consensus 26 ~~v~~ai~ra~~~L~~~Q~---~DG~W~g~~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGGWg~~ 102 (344)
+.-.+.++..++.++.+.+ .|| |.|+.+.+++=||. |.+.-..+..+ .+.-.+.++||+++|.+|||||..
T Consensus 50 ~~~~~~~~~Lie~VK~~l~~~~~~g-~~g~~S~S~YDTAW-VAmvp~~~~~~----~p~Fp~~~~wil~nQ~~DGsWg~~ 123 (817)
T 3sdr_A 50 SSYRERAEVLVSEIKAMLNPAITGD-GESMITPSAYDTAW-VARVPAIDGSA----RPQFPQTVDWILKNQLKDGSWGIQ 123 (817)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSS-CCCCCCCCHHHHHH-HHTCBCTTSCS----SBSSHHHHHHHHHCCCTTSCCSCT
T ss_pred hhHHHHHHHHHHHHHHHhccccCCC-CCcccccCHHHhhH-HheeecCCCCC----CCCchHHHHHHHHccCCCCCCCCC
Confidence 3444555666666666655 677 66666555554554 43222222111 234578899999999999999853
Q ss_pred cC--CCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHc
Q 044313 103 VE--GHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDR 144 (344)
Q Consensus 103 ~~--g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~ 144 (344)
.. ..--+..|.-|.+||+.-+..+ .++.||.+||.++
T Consensus 124 ~~~~~~d~ll~TlAcvlAL~~w~~~~-----~~i~~Gl~fl~~n 162 (817)
T 3sdr_A 124 SHFLLSDRLLATLSCVLVLLKWNVGD-----LQVEQGIEFIKSN 162 (817)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHTTCCH-----HHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHccCCH-----HHHHHHHHHHHHH
Confidence 21 1124788999999999987543 6899999999985
No 37
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=96.99 E-value=0.00058 Score=67.17 Aligned_cols=84 Identities=14% Similarity=0.103 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccccHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHhhccCCCCccccc
Q 044313 25 PEIATTALRRAVNIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTE-HRKEMLRYICNHQNEDGGWGLHV 103 (344)
Q Consensus 25 ~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~~~~~~a~~v~~l~~lg~~~~~~~~~-~~~~~~~~L~~~Q~~DGGWg~~~ 103 (344)
+.++..+|++++.+|++.|++||+| |+.+.|+..+-+|...|... . .+ ...++.++|++ |++||+|+
T Consensus 178 ~~~i~~ai~~~~~~l~~~q~~dG~f-----Gn~yST~LA~QAL~~~~~~~--~-~~W~c~~al~~l~~-q~~~G~F~--- 245 (399)
T 2pmv_A 178 RSLFGQVLKDIVEKISMKIKDNGII-----GDIYSTGLAMQALSVTPEPS--K-KEWNCKKTTDMILN-EIKQGKFH--- 245 (399)
T ss_dssp HHHHHHHHHHHHHHHTTSBCTTSCB-----SSHHHHHHHHHHHHHCSSCC--S-SCCCHHHHHHHHHH-HHTTTTTC---
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcc-----cccccHHHHHHHHHhcCCCc--c-ccccHHHHHHHHHH-HhhCCCcC---
Confidence 4468999999999999999999999 46788888888888887521 1 13 47899999999 99999994
Q ss_pred CCCccccchHHHHHHHHHcCC
Q 044313 104 EGHSTMFGTVFNYICMRLLGE 124 (344)
Q Consensus 104 ~g~s~i~~T~~ay~AL~l~G~ 124 (344)
++.+|+..+-||.--++
T Consensus 246 ----np~~taQilPaL~~kty 262 (399)
T 2pmv_A 246 ----NPMSIAQILPSLKGKTY 262 (399)
T ss_dssp ----SHHHHHHHHHHHTTCCG
T ss_pred ----CHHHHHHHHHHhcCCCc
Confidence 77889998888854433
No 38
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=96.90 E-value=0.0024 Score=71.51 Aligned_cols=91 Identities=14% Similarity=0.173 Sum_probs=63.8
Q ss_pred cCCCCCccccHHHHHHHHHhcCCCCCCCHH-------HHHHHHHHHHhhccCCCCcccccCCCccccchHHHHHHHHHc-
Q 044313 51 ADNSGPLFFNTPMVICLYITGHLNIIFSTE-------HRKEMLRYICNHQNEDGGWGLHVEGHSTMFGTVFNYICMRLL- 122 (344)
Q Consensus 51 g~~~~~~~~~a~~v~~l~~lg~~~~~~~~~-------~~~~~~~~L~~~Q~~DGGWg~~~~g~s~i~~T~~ay~AL~l~- 122 (344)
||.|.++.-....+++++.+.... ..+.+ .+++++++|++.|++||||+.+.+++++..-|+.+.-+|..+
T Consensus 837 GC~EQ~~s~~~p~~~~~~yl~~~~-~~~~~~~~~~~~~i~~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~ 915 (1325)
T 2pn5_A 837 GCGEQNMVKFVPNILVLDYLHAIG-SKEQHLIDKATNLLRQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAV 915 (1325)
T ss_dssp CSTTGGGGGTHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHT
T ss_pred CchhHHHHHHhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHH
Confidence 456666555545555555553211 12233 355566677999999999999988888888898888888765
Q ss_pred --CCCCCCCCchHHHHHHHHHHHcC
Q 044313 123 --GEGPDGGENSGCTRARKWILDRG 145 (344)
Q Consensus 123 --G~~~~~~~~p~m~rAr~~Il~~G 145 (344)
|...++ ..+.||.+||.+.+
T Consensus 916 ~~~~~v~~---~~l~~a~~~L~~~q 937 (1325)
T 2pn5_A 916 KYISDIDA---AMVEKALDWLASKQ 937 (1325)
T ss_dssp TTCSCSCH---HHHHHHHHHHHHTC
T ss_pred hhEEcCCH---HHHHHHHHHHHhhh
Confidence 554444 78999999999865
No 39
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=96.85 E-value=0.00064 Score=72.35 Aligned_cols=59 Identities=20% Similarity=0.376 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhhccCCCCcccccC--CCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHc
Q 044313 81 HRKEMLRYICNHQNEDGGWGLHVE--GHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDR 144 (344)
Q Consensus 81 ~~~~~~~~L~~~Q~~DGGWg~~~~--g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~ 144 (344)
.-.+.++||+++|++|||||.... ..--+..|.-|.+||+.-+..+ .++.||.+||.++
T Consensus 75 ~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l~~TlAcvlAL~~w~~~~-----~~i~~Gl~fl~~n 135 (785)
T 3s9v_A 75 HFPETVEWILQNQLKDGSWGEGFYFLAYDRILATLACIITLTLWRTGE-----TQVQKGIEFFRTQ 135 (785)
T ss_dssp SSHHHHHHHHHCCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCCH-----HHHHHHHHHHHHH
T ss_pred CchHHHHHHHHccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHcccCH-----HHHHHHHHHHHHH
Confidence 347789999999999999985422 1123888999999999987543 6899999999874
No 40
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=96.51 E-value=0.0012 Score=69.62 Aligned_cols=57 Identities=19% Similarity=0.364 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhccCCCCcccccCCCc---cccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHc
Q 044313 82 RKEMLRYICNHQNEDGGWGLHVEGHS---TMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDR 144 (344)
Q Consensus 82 ~~~~~~~L~~~Q~~DGGWg~~~~g~s---~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~ 144 (344)
-.+.++||+++|.+|||||.. ++.+ -+..|.-|.+||+--++.+ .++.||.+||.++
T Consensus 52 Fp~~~~wil~nQ~~DGsWG~~-~~~~~~D~ll~TLAcvlAL~~w~~~~-----~~i~rGl~fl~~n 111 (727)
T 3pya_A 52 FPSAVKWIAENQLSDGSWGDA-YLFSYHDRLINTLACVVALRSWNLFP-----HQCNKGITFFREN 111 (727)
T ss_dssp CHHHHHHHHHTCCTTSCCSCS-SSCCHHHHHHHHHHHHHHHHHTTCCH-----HHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCCCCCC-CCcchhhHHHHHHHHHHHHHHccCCH-----HHHHHHHHHHHHH
Confidence 467899999999999999963 2222 4788999999999876643 5799999999874
No 41
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=96.51 E-value=0.0048 Score=69.85 Aligned_cols=91 Identities=15% Similarity=0.125 Sum_probs=61.7
Q ss_pred cCCCCCccccHHHHHHHHHhcCCCCCCCHH-------HHHHHHHHHHhhccCCCCcccccC----CCccccchHHHHHHH
Q 044313 51 ADNSGPLFFNTPMVICLYITGHLNIIFSTE-------HRKEMLRYICNHQNEDGGWGLHVE----GHSTMFGTVFNYICM 119 (344)
Q Consensus 51 g~~~~~~~~~a~~v~~l~~lg~~~~~~~~~-------~~~~~~~~L~~~Q~~DGGWg~~~~----g~s~i~~T~~ay~AL 119 (344)
||.|-++......++++..+...+ .++++ .+++++++|++.|++||||+.+.+ ++++..-|+.+.-+|
T Consensus 948 GC~EQ~ms~~~P~l~~~~yL~~t~-q~~~~~~~~a~~~i~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l 1026 (1451)
T 4acq_A 948 GCGEXNMVLFAPNIYVLDYLNETQ-QLTPEIKSKAIGYLNTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTF 1026 (1451)
T ss_dssp SSTTTTHHHHHHHHHHHHHHHHTS-CCCHHHHHHHHHHHHHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHH
T ss_pred CchhhhhhhhhhHHHHHHHHHhcc-cCCHHHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHH
Confidence 456666554444555555553211 12232 256788999999999999998864 457777788877777
Q ss_pred HHcC--CCCCCCCchHHHHHHHHHHHcC
Q 044313 120 RLLG--EGPDGGENSGCTRARKWILDRG 145 (344)
Q Consensus 120 ~l~G--~~~~~~~~p~m~rAr~~Il~~G 145 (344)
..++ ...++ +.+.||.+||++++
T Consensus 1027 ~~a~~~~~v~~---~~l~~a~~wL~~~Q 1051 (1451)
T 4acq_A 1027 AQARAYIFIDE---AHITQALIWLSQRQ 1051 (1451)
T ss_dssp HHHTTTSCCCT---HHHHHHHHHHHHTE
T ss_pred HHhhhhcccCH---HHHHHHHHHHHhhc
Confidence 6655 33444 89999999999876
No 42
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=96.43 E-value=0.0022 Score=68.16 Aligned_cols=59 Identities=20% Similarity=0.423 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhccCCCCcccccC--CCccccchHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHc
Q 044313 81 HRKEMLRYICNHQNEDGGWGLHVE--GHSTMFGTVFNYICMRLLGEGPDGGENSGCTRARKWILDR 144 (344)
Q Consensus 81 ~~~~~~~~L~~~Q~~DGGWg~~~~--g~s~i~~T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~ 144 (344)
.-.+.++||+++|.+|||||.... ..--+..|.-|.+||+.-+..+ .++.||.+||.++
T Consensus 54 ~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~~-----~~i~~Gl~fl~~n 114 (764)
T 3p5p_A 54 RFPQALNWVFNNQLQDGSWGIESHFSLCDRLLNTTNSVIALSVWKTGH-----SQVQQGAEFIAEN 114 (764)
T ss_dssp SCHHHHHHHHHCCCTTSCCSCTTSCCHHHHHHHHHHHHHHHHHTTCCH-----HHHHHHHHHHHHH
T ss_pred CChHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCCH-----HHHHHHHHHHHHH
Confidence 356789999999999999985321 1224788999999999977543 6899999999874
No 43
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=94.66 E-value=0.11 Score=54.81 Aligned_cols=94 Identities=13% Similarity=0.202 Sum_probs=63.6
Q ss_pred ccCCCCCccccHHHHHHHHHh---cCCCCCCCH-------HHHHHHHHHHHhhccCCCCcccccCCCccccchHHHHHHH
Q 044313 50 PADNSGPLFFNTPMVICLYIT---GHLNIIFST-------EHRKEMLRYICNHQNEDGGWGLHVEGHSTMFGTVFNYICM 119 (344)
Q Consensus 50 ~g~~~~~~~~~a~~v~~l~~l---g~~~~~~~~-------~~~~~~~~~L~~~Q~~DGGWg~~~~g~s~i~~T~~ay~AL 119 (344)
.||.|-++......++++..+ +..+ .+.. ..++++.+.|++.|++||||+.+.+++|+..-|+.+.-.|
T Consensus 329 ~GC~EQ~ms~~~p~i~v~~yl~~t~q~~-~l~~~~~~~a~~~l~~gyqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~~l 407 (767)
T 4fxk_B 329 RGCGEQTMIYLAPTLAASRYLDKTEQWS-TLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVL 407 (767)
T ss_dssp CCSTTGGGGGTHHHHHHHHHHHHTCTTT-TSCSSHHHHHHHHHHHHHHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHHHH
T ss_pred ccchhhHHHhhhhhhhHHHHHHhhhhhc-ccCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCchhHHHHHHHH
Confidence 456666666555555555554 2211 1111 2367788888999999999999988888888888887777
Q ss_pred HHcCCC--CCCCCchHHHHHHHHHHHcCCC
Q 044313 120 RLLGEG--PDGGENSGCTRARKWILDRGGA 147 (344)
Q Consensus 120 ~l~G~~--~~~~~~p~m~rAr~~Il~~GG~ 147 (344)
..+..- .+. ..+.++..||..++-.
T Consensus 408 ~~A~~~i~id~---~~i~~a~~wL~~~Q~~ 434 (767)
T 4fxk_B 408 SLAQEQVGGSP---EKLQETSNWLLSQQQA 434 (767)
T ss_dssp HHTCSSSSCCH---HHHHHHHHHHHHTBCT
T ss_pred HHHHhhcCcch---HHHHHHHHHHHHhhhh
Confidence 665332 232 6799999999887543
No 44
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=90.60 E-value=0.35 Score=55.46 Aligned_cols=59 Identities=8% Similarity=0.122 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhccCCCCcccccCCCccccchHHHHHHHHHcCC--CCCCCCchHHHHHHHHHHH
Q 044313 82 RKEMLRYICNHQNEDGGWGLHVEGHSTMFGTVFNYICMRLLGE--GPDGGENSGCTRARKWILD 143 (344)
Q Consensus 82 ~~~~~~~L~~~Q~~DGGWg~~~~g~s~i~~T~~ay~AL~l~G~--~~~~~~~p~m~rAr~~Il~ 143 (344)
++.+++.+++.|++||||+.+.+++++..-|+.+.-.|..+.. ..++ ..+.+|.+||.+
T Consensus 1048 i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~---~~l~~a~~~L~~ 1108 (1661)
T 2b39_A 1048 IRKGYTQQLAFRQKSSAYAAFQYRPPSTWLTAYVVKVFALAANLIAIDS---KDLCETVKWLIL 1108 (1661)
T ss_dssp HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCccccCCCCCchhhhHHHHHHHHhhhhcccCCH---HHHHHHHHHhhH
Confidence 5556777888999999999998888888888888877765532 2333 789999999995
No 45
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=88.19 E-value=0.49 Score=54.24 Aligned_cols=59 Identities=15% Similarity=0.271 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhccCCCCcccccCCCccccchHHHHHHHHHcCC--CCCCCCchHHHHHHHHHHH
Q 044313 82 RKEMLRYICNHQNEDGGWGLHVEGHSTMFGTVFNYICMRLLGE--GPDGGENSGCTRARKWILD 143 (344)
Q Consensus 82 ~~~~~~~L~~~Q~~DGGWg~~~~g~s~i~~T~~ay~AL~l~G~--~~~~~~~p~m~rAr~~Il~ 143 (344)
++.+.+.+++.|++||||+.+.++.++..-|+.+.-.|..+.. ..++ ..+.+|.+||.+
T Consensus 1049 i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~---~~l~~a~~~L~~ 1109 (1676)
T 3cu7_A 1049 LKEGMLSIMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVEQNQ---NSICNSLLWLVE 1109 (1676)
T ss_dssp HHHHHHHGGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTSCCCH---HHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCCCccccCCCCCcEEEeHHHHHHHHHHHhcccCCH---HHHHHHHHHHHH
Confidence 3444556778999999999996678888888888777754421 3333 689999999998
No 46
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=86.46 E-value=0.13 Score=58.85 Aligned_cols=103 Identities=10% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCCcccCCCCCccccHHHHHHHHHhcCCC--CCCCH-------HHHHHHHHHHHhhccCCCCcccccC
Q 044313 34 RAVNIFSALQSSHGHWPADNSGPLFFNTPMVICLYITGHLN--IIFST-------EHRKEMLRYICNHQNEDGGWGLHVE 104 (344)
Q Consensus 34 ra~~~L~~~Q~~DG~W~g~~~~~~~~~a~~v~~l~~lg~~~--~~~~~-------~~~~~~~~~L~~~Q~~DGGWg~~~~ 104 (344)
+++++|++. | .||.|-++...+..+++++.|...+ +.+.. ..++++.+.+++.|++||||+.+.+
T Consensus 981 ~~L~~Ll~~--P----yGCgEQnms~~~P~v~v~~yL~~t~q~~~~~~e~~~ka~~~i~~Gyqr~l~yq~~DGsfs~w~~ 1054 (1642)
T 3prx_B 981 SKLNHLIIT--P----SGCGEQNMIRMAAPVIATYYLDTTEQWETLGINRRTEAVNQIVTGYAQQMVYKKADHSYAAFTN 1054 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHhc--C----CCcHHHHHHHHHHHHHHHHHHhhhccccccChhHHHHHHHHHHHHHHHHHHhcCCCCCeecCCC
Confidence 577888766 3 3456666655555555555543211 00101 2356677788889999999998866
Q ss_pred CCccccchHHHHHHHHHc---CCCCCCCCchHHHHHHHHHHH-cC
Q 044313 105 GHSTMFGTVFNYICMRLL---GEGPDGGENSGCTRARKWILD-RG 145 (344)
Q Consensus 105 g~s~i~~T~~ay~AL~l~---G~~~~~~~~p~m~rAr~~Il~-~G 145 (344)
++++.--|+.++-.|..+ +...|. ..+.+|.+||.+ ++
T Consensus 1055 ~~~stWLTAyV~k~f~~A~~~i~~Vd~---~~l~~~~~wL~~~~Q 1096 (1642)
T 3prx_B 1055 RASSSWLTAYVVKVFAMAAKMVAGISH---EIICGGVRWLILNRQ 1096 (1642)
T ss_dssp ---------------------------------------------
T ss_pred CCCccccHHHHHHHHHHHHhhccCCCH---HHHHHHHHHHHhhcc
Confidence 666766677666555444 222344 689999999987 44
No 47
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=82.90 E-value=3.1 Score=40.14 Aligned_cols=118 Identities=10% Similarity=0.041 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHhcC-CCCCcccCC--------CCCc------cccHHHHHHHHHhcCC-CCCC---CHHHHHHH
Q 044313 25 PEIATTALRRAVNIFSALQS-SHGHWPADN--------SGPL------FFNTPMVICLYITGHL-NIIF---STEHRKEM 85 (344)
Q Consensus 25 ~~~v~~ai~ra~~~L~~~Q~-~DG~W~g~~--------~~~~------~~~a~~v~~l~~lg~~-~~~~---~~~~~~~~ 85 (344)
++-++.|++....+...+++ ++|-|.-.+ .... ....+++..+..+... +.+. --+..+++
T Consensus 189 ~~y~d~A~~q~~~~~~~l~D~~tGl~~h~~~~~~~~~~~~~~WaRG~gW~~~gl~~~l~~l~~p~~~~~~~~~~~~~~~~ 268 (382)
T 3pmm_A 189 PQYVEEATYQFLLHVQNLMDRETGLWFHGWNYEGRHNFARARWARGNSWLTMVIPDFLELVDLPEGNAVRRYLITVLDAQ 268 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHBCTTTSCBCSEEETTTTBCTTCCCBHHHHHHHHHHHHHHHHHHCCCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCCCCCeeeeccCCCCCCCCcceecccccHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHH
Confidence 34567788888888888885 689985421 1111 1122233344443211 1000 01347889
Q ss_pred HHHHHhhccCCCCcccccCCC---ccccchHHHHHHH-HHc--CCCCCCCCchHHHHHHHHHHH
Q 044313 86 LRYICNHQNEDGGWGLHVEGH---STMFGTVFNYICM-RLL--GEGPDGGENSGCTRARKWILD 143 (344)
Q Consensus 86 ~~~L~~~Q~~DGGWg~~~~g~---s~i~~T~~ay~AL-~l~--G~~~~~~~~p~m~rAr~~Il~ 143 (344)
+++|.++|.+||-|-...+.+ -+.|+|+....|| +.. |.-++.. -+...||.+-|.+
T Consensus 269 a~~~~~~q~~~G~W~~~~d~~~~y~EsSatA~~ay~ll~~~~~g~l~~~Y-~~~a~ka~~~l~~ 331 (382)
T 3pmm_A 269 IAALAECQDDSGLWHTLLDDPHSYLEASATAGFAYGILKAVRKRYVGQHY-AGVAEKAIRGIVQ 331 (382)
T ss_dssp HHHHHHHCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHTTSSCGGG-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCChhhccCCCCCCccccHHHHHHHHHHHHHHcCCCcHHH-HHHHHHHHHHHHh
Confidence 999999999999998766533 3677777755553 322 3322211 1455566666655
No 48
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=79.74 E-value=3 Score=44.36 Aligned_cols=90 Identities=23% Similarity=0.311 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcCC-CCCcccCCCCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCC-Cccccc-CCCccc
Q 044313 33 RRAVNIFSALQSS-HGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDG-GWGLHV-EGHSTM 109 (344)
Q Consensus 33 ~ra~~~L~~~Q~~-DG~W~g~~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DG-GWg~~~-~g~s~i 109 (344)
+++.+||.+.++. +|.-++-|..+.+-...+|-.+.-+|... .+ +++|+++++++.+.-.++| ||+ . +...++
T Consensus 245 ~~~~~YL~~~~~~~~g~VP~~yP~d~~e~l~lID~LqrLGi~~-hF-~~EI~~~L~~i~~~~~~~gi~~~--~~~~~~Dl 320 (785)
T 3s9v_A 245 KKCLDFLNFVLKKFGNHVPCHYPLDLFERLWAVDTVERLGIDR-HF-KEEIKEALDYVYSHWDERGIGWA--RENPVPDI 320 (785)
T ss_dssp HHHHHHHHHHHHHHSSCCCSSCCCHHHHHHHHHHHHHHTTCGG-GG-HHHHHHHHHHHHTTCCTTCCCSS--TTCSSCCH
T ss_pred hhHHHHHHHHHHhcCCCCCCcCCCcHHHHHHHHHHHHHcCCcc-cc-HHHHHHHHHHHHHHhhhcccccc--ccCCCCCH
Confidence 6788999988875 55555555555444444555677788632 33 5679999999987655544 453 2 134689
Q ss_pred cchHHHHHHHHHcCCCC
Q 044313 110 FGTVFNYICMRLLGEGP 126 (344)
Q Consensus 110 ~~T~~ay~AL~l~G~~~ 126 (344)
..|+++.-.||..|+..
T Consensus 321 ~~tAl~FRlLR~~Gy~V 337 (785)
T 3s9v_A 321 DDTAMGLRILRLHGYNV 337 (785)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 99999999999999764
No 49
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=76.78 E-value=7 Score=37.64 Aligned_cols=74 Identities=12% Similarity=0.143 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcccCCCC-Cccc--cHHHHHHHHHh-----cCCCCCCCHHHHHHHHHHHHhhccCC
Q 044313 25 PEIATTALRRAVNIFSALQSSHGHWPADNSG-PLFF--NTPMVICLYIT-----GHLNIIFSTEHRKEMLRYICNHQNED 96 (344)
Q Consensus 25 ~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~~~-~~~~--~a~~v~~l~~l-----g~~~~~~~~~~~~~~~~~L~~~Q~~D 96 (344)
.+++.+.+++.++++.+.|.+||.|..-..- ..+. +++.+++.-++ |..+ ....+..+++.+.|.++-++|
T Consensus 258 ~~~~~~~~~~~a~~~~~~q~~~G~W~~~~d~~~~y~EsSatA~~ay~ll~~~~~g~l~-~~Y~~~a~ka~~~l~~~i~~d 336 (382)
T 3pmm_A 258 RRYLITVLDAQIAALAECQDDSGLWHTLLDDPHSYLEASATAGFAYGILKAVRKRYVG-QHYAGVAEKAIRGIVQNISPQ 336 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHTTSSC-GGGHHHHHHHHHHHHHTBCTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCChhhccCCCCCCccccHHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHhhCCCC
Confidence 4568888999999999999999999853211 1222 23334333222 3332 122456899999999999999
Q ss_pred CCc
Q 044313 97 GGW 99 (344)
Q Consensus 97 GGW 99 (344)
|.-
T Consensus 337 G~l 339 (382)
T 3pmm_A 337 GEL 339 (382)
T ss_dssp SCB
T ss_pred CCE
Confidence 964
No 50
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=74.22 E-value=12 Score=38.67 Aligned_cols=64 Identities=13% Similarity=0.090 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhhccCCCCcc--cccCC-----CccccchHHHHHHHHHcCCCCCCCCchH-HHHHHHHHHHcC
Q 044313 79 TEHRKEMLRYICNHQNEDGGWG--LHVEG-----HSTMFGTVFNYICMRLLGEGPDGGENSG-CTRARKWILDRG 145 (344)
Q Consensus 79 ~~~~~~~~~~L~~~Q~~DGGWg--~~~~g-----~s~i~~T~~ay~AL~l~G~~~~~~~~p~-m~rAr~~Il~~G 145 (344)
.+..++.++||.+.|++||+|- .+.+| .-++.+|.+...++..+...--- +. +++|.+||.++|
T Consensus 358 ~~~a~~~l~~l~~~q~~~G~~~~~~~~~G~p~w~~~Q~D~~g~~l~~~~~~~~~g~~---~~~v~~al~~i~~~~ 429 (684)
T 1lf6_A 358 VDSANRSLDYLAKVVKDNGMIPQNTWISGKPYWTGIQLDEQADPIILSYRLKRYDLY---DSLVKPLADFIIKIG 429 (684)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCSCBCTTSCBCCCCCCHHHHHHHHHHHHHTTCGGGT---TTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhcCCCCCcccceeCCCCcccCCccccchHHHHHHHHHHHHcCch---HHHHHHHHHHHHHhC
Confidence 4678899999999999999973 22232 23466667766655433221112 65 999999999986
No 51
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=72.55 E-value=6.4 Score=41.69 Aligned_cols=91 Identities=22% Similarity=0.285 Sum_probs=63.3
Q ss_pred HHHHHHHHHhcCC-CCCcccCCCCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCC-CcccccCCCcccc
Q 044313 33 RRAVNIFSALQSS-HGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDG-GWGLHVEGHSTMF 110 (344)
Q Consensus 33 ~ra~~~L~~~Q~~-DG~W~g~~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DG-GWg~~~~g~s~i~ 110 (344)
+++.+||.+.++. +|.-++-|..+.+-...+|-.+.-+|... .+ ++.|+++++++.+.-.+.| ||+ ..+...++.
T Consensus 221 ~~~~~YL~~~~~~~~g~VP~~yP~d~~e~l~lID~LqrLGi~~-hF-~~EI~~~L~~i~~~~~~~gi~~~-~~~~~~Dl~ 297 (764)
T 3p5p_A 221 EKCFTFLNNLLDKFGGCVPCMYSIDLLERLSLVDNIEHLGIGR-HF-KQEIKGALDYVYRHWSERGIGWG-RDSLVPDLN 297 (764)
T ss_dssp HHHHHHHHHHHHHHTSCCCSSCCCHHHHHHHHHHHHHHHTCGG-GG-HHHHHHHHHHHHHTCCTTCCCSS-TTCSSCCHH
T ss_pred hhHHHHHHHHHHhcCCCCCCcCCCcHHHHHHHHHHHHHcCCcc-cc-HHHHHHHHHHHHHHhhhcccccc-cCCCCCCHH
Confidence 5789999998866 66666666555544455566778888632 33 4679999999987655444 332 011246899
Q ss_pred chHHHHHHHHHcCCCC
Q 044313 111 GTVFNYICMRLLGEGP 126 (344)
Q Consensus 111 ~T~~ay~AL~l~G~~~ 126 (344)
.|+++.-.||..|+..
T Consensus 298 ~tAl~FRlLR~~Gy~V 313 (764)
T 3p5p_A 298 TTALGLRTLRMHGYNV 313 (764)
T ss_dssp HHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhcCCCc
Confidence 9999999999999764
No 52
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=69.93 E-value=6.6 Score=38.89 Aligned_cols=75 Identities=17% Similarity=0.190 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCcccCC--CCCc-cccHHHHHHHHH-----hcCCCCCCCHHHHHHHHHHHHhhccC
Q 044313 24 TPEIATTALRRAVNIFSALQSSHGHWPADN--SGPL-FFNTPMVICLYI-----TGHLNIIFSTEHRKEMLRYICNHQNE 95 (344)
Q Consensus 24 ~~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~--~~~~-~~~a~~v~~l~~-----lg~~~~~~~~~~~~~~~~~L~~~Q~~ 95 (344)
..+++.+.+++.++++.+.|.+||.|..-. .++. =.+++.+++.-+ .|..+...-.+..+++.+.|.++-++
T Consensus 288 ~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vld~~~~y~EsSaTAmfaygllkgvr~G~Ld~~~Y~~~A~ka~~~L~~~i~~ 367 (445)
T 3k11_A 288 QRPKVMDYFRAHVRGVTALQSGEGFWHQLLDCNDSYLETSATAIYVYCLAHAINKGWIDAIAYGPVAQLGWHAVAGKINE 367 (445)
T ss_dssp THHHHHHHHHHHHHHHHTTCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTBCT
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCchhhccCCCCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 466788999999999999999999997522 2221 122333333222 24322000124588999999999999
Q ss_pred CCC
Q 044313 96 DGG 98 (344)
Q Consensus 96 DGG 98 (344)
||-
T Consensus 368 dG~ 370 (445)
T 3k11_A 368 EGQ 370 (445)
T ss_dssp TSC
T ss_pred CCC
Confidence 994
No 53
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=69.64 E-value=5.7 Score=37.89 Aligned_cols=62 Identities=16% Similarity=0.218 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhccC-CCCcccccCC------CccccchHHHHHHHH-H--cCCCCCCCCchHHHHHHHHHHH
Q 044313 81 HRKEMLRYICNHQNE-DGGWGLHVEG------HSTMFGTVFNYICMR-L--LGEGPDGGENSGCTRARKWILD 143 (344)
Q Consensus 81 ~~~~~~~~L~~~Q~~-DGGWg~~~~g------~s~i~~T~~ay~AL~-l--~G~~~~~~~~p~m~rAr~~Il~ 143 (344)
..++++++|.++|.+ ||-|-...+. .-+.|+|++...+|. . .|.-++.. .+...||.+.|.+
T Consensus 242 ~~~~~a~~l~~~q~~~dG~W~~~ld~~~~~~~~~EsSatA~~ay~l~~g~~~g~l~~~Y-~~~a~k~~~~l~~ 313 (373)
T 1nc5_A 242 TLQDMIKSICRYQDKETGLWYQIVDKGDRSDNWLESSGSCLYMYAIAKGINKGYLDRAY-ETTLLKAYQGLIQ 313 (373)
T ss_dssp HHHHHHHHHHTTSCTTTSCCBSBTTCTTSTTCCBCHHHHHHHHHHHHHHHHHTSSCGGG-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCceeeecCCCCCCCCCccccHHHHHHHHHHHHHHCCCCcHHH-HHHHHHHHHHHHH
Confidence 468889999999997 9999743432 235677777555543 3 25432222 1567777777765
No 54
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=66.71 E-value=9.3 Score=40.75 Aligned_cols=91 Identities=21% Similarity=0.311 Sum_probs=62.7
Q ss_pred HHHHHHHHHhcCC-CCCcccCCCCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCC-CcccccCCCcccc
Q 044313 33 RRAVNIFSALQSS-HGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDG-GWGLHVEGHSTMF 110 (344)
Q Consensus 33 ~ra~~~L~~~Q~~-DG~W~g~~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DG-GWg~~~~g~s~i~ 110 (344)
+++.+||.+.++. +|.-++-|..+.+-.-.+|-.+.-+|... .+ +++|+++++++.+.-.++| ||+ ..+...++.
T Consensus 273 ~~~~~YL~~~~~~~~g~VP~~yP~d~~e~l~lID~LqrLGi~~-hF-~~EI~~~L~~i~~~~~~~gi~~~-~~~~~~Dl~ 349 (817)
T 3sdr_A 273 AKCLEFLNSVMIKFGNFVPCLYPVDLLERLLIVDNIVRLGIYR-HF-EKEIKEALDYVYRHWNERGIGWG-RLNPIADLE 349 (817)
T ss_dssp HHHHHHHHHHHHHHSSCCCSSSCCHHHHHHHHHHHHHHTTCGG-GG-HHHHHHHHHHHHHHCCTTCCCSS-TTCSSCCHH
T ss_pred hhHHHHHHHHHHhcCCCCCccCCCcHHHHHHHHHHHHHcCCcc-cc-HHHHHHHHHHHHHHhhhcccccc-cCCCCCCHH
Confidence 5789999998876 66555555555444444555677788632 33 4679999999987655444 332 112356899
Q ss_pred chHHHHHHHHHcCCCC
Q 044313 111 GTVFNYICMRLLGEGP 126 (344)
Q Consensus 111 ~T~~ay~AL~l~G~~~ 126 (344)
.|+++.-.||..|+..
T Consensus 350 ~tAl~FRlLR~~Gy~V 365 (817)
T 3sdr_A 350 TTALGFRLLRLHRYNV 365 (817)
T ss_dssp HHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHcCCCc
Confidence 9999999999999764
No 55
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=66.36 E-value=16 Score=34.75 Aligned_cols=72 Identities=15% Similarity=0.208 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCC-CCCcccCCCC----Ccccc--HHHHHHHHHh-----cCCCCCCCHHHHHHHHHHHHhh
Q 044313 25 PEIATTALRRAVNIFSALQSS-HGHWPADNSG----PLFFN--TPMVICLYIT-----GHLNIIFSTEHRKEMLRYICNH 92 (344)
Q Consensus 25 ~~~v~~ai~ra~~~L~~~Q~~-DG~W~g~~~~----~~~~~--a~~v~~l~~l-----g~~~~~~~~~~~~~~~~~L~~~ 92 (344)
.++..+..++.++++.+.|.+ ||.|...+.. ..+.. +..+++.-++ |..+ ....+..+++.+.|.++
T Consensus 236 ~~~~~~~~~~~a~~l~~~q~~~dG~W~~~ld~~~~~~~~~EsSatA~~ay~l~~g~~~g~l~-~~Y~~~a~k~~~~l~~~ 314 (373)
T 1nc5_A 236 RHVWKNTLQDMIKSICRYQDKETGLWYQIVDKGDRSDNWLESSGSCLYMYAIAKGINKGYLD-RAYETTLLKAYQGLIQH 314 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTSCCBSBTTCTTSTTCCBCHHHHHHHHHHHHHHHHHTSSC-GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCceeeecCCCCCCCCCccccHHHHHHHHHHHHHHCCCCc-HHHHHHHHHHHHHHHHh
Confidence 356788889999999999997 9999842211 11232 2233322222 4333 12346689999999885
Q ss_pred ---ccCCC
Q 044313 93 ---QNEDG 97 (344)
Q Consensus 93 ---Q~~DG 97 (344)
.++||
T Consensus 315 ~~~~~~dG 322 (373)
T 1nc5_A 315 KTETSEDG 322 (373)
T ss_dssp HEEECTTS
T ss_pred ceeECCCC
Confidence 57888
No 56
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=63.74 E-value=59 Score=35.44 Aligned_cols=112 Identities=17% Similarity=0.249 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHhcCCC--CCcccCCCCC----------------ccc-cHHH-HHHHHHhcCCCCCCCHHHHHHHH
Q 044313 27 IATTALRRAVNIFSALQSSH--GHWPADNSGP----------------LFF-NTPM-VICLYITGHLNIIFSTEHRKEML 86 (344)
Q Consensus 27 ~v~~ai~ra~~~L~~~Q~~D--G~W~g~~~~~----------------~~~-~a~~-v~~l~~lg~~~~~~~~~~~~~~~ 86 (344)
...+.+++++--|+.++.+. |.-.+.-..+ +++ ++.+ +.++-.+|. .+..++.+
T Consensus 281 ~~~~~~~rSl~~Lk~l~~~~t~GaiiAS~t~p~~e~~gg~rn~dgYry~W~RDaa~t~~all~~G~------~e~A~~~l 354 (1020)
T 1ulv_A 281 ALRTQYDVSLMTVKSHEDKTFPGAFIASLTIPWGQAASAETHREGYHAVWARDMYQSVTALLAAGD------EEAAARGV 354 (1020)
T ss_dssp HHHHHHHHHHHHHHTTBCSSSTTCBCSCSSCTTGGGSBCSSCCCTTCSBCHHHHHHHHHHHHHHTC------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCeEEEeCCCCcccccCCccCCCCCceEccchHHHHHHHHHHcCC------HHHHHHHH
Confidence 45556667777777777652 5443221111 111 2222 233444564 56789999
Q ss_pred HHHHhhc-cCCCCccccc--CCC-----ccccchHHHHHHHHHcCCCCCCCCch-HHHHHHHHHHHcC
Q 044313 87 RYICNHQ-NEDGGWGLHV--EGH-----STMFGTVFNYICMRLLGEGPDGGENS-GCTRARKWILDRG 145 (344)
Q Consensus 87 ~~L~~~Q-~~DGGWg~~~--~g~-----s~i~~T~~ay~AL~l~G~~~~~~~~p-~m~rAr~~Il~~G 145 (344)
+||.+.| ++||.|-.-+ +|. -++..|.+..+++...... +..-=+ ++++|.+||.++|
T Consensus 355 ~~L~~~Q~~~~G~~~~~y~i~G~~~w~~~Q~D~~g~~l~~~~~~~~~-d~~~w~~~v~~al~~i~~~g 421 (1020)
T 1ulv_A 355 EWLFTYQQQPDGHFPQTSRVDGTIGQNGIQLDETAFPILLANQIGRT-DAGFYRNELKPAADYLVAAG 421 (1020)
T ss_dssp HHHHHHTCCTTSCCCSCBCTTSCBCCCCCBTHHHHHHHHHHHHHTCC-CHHHHHHTHHHHHHHHHHHC
T ss_pred HHHHHHhcCCCCCeeeEEecCCCcCCCCccCccchHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhC
Confidence 9999999 9999885322 221 2667788877776655332 210003 7999999999986
No 57
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=57.48 E-value=22 Score=37.40 Aligned_cols=92 Identities=20% Similarity=0.209 Sum_probs=61.9
Q ss_pred HHHHHHHHHhcCC-CCCcccCCCCCccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCC-CcccccCCCcccc
Q 044313 33 RRAVNIFSALQSS-HGHWPADNSGPLFFNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDG-GWGLHVEGHSTMF 110 (344)
Q Consensus 33 ~ra~~~L~~~Q~~-DG~W~g~~~~~~~~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DG-GWg~~~~g~s~i~ 110 (344)
.++.+||.+.++. +|.=++-|..+.+-...+|=.+.-+|... .+ ++.|+++++++.+....+| ||+- .....++.
T Consensus 220 ~~~l~YL~~~v~k~~g~VP~~yP~d~~e~L~lID~LqRLGIs~-hF-e~EI~~~L~~i~~~~~~~g~~~~~-~~~~~DL~ 296 (727)
T 3pya_A 220 SNCLEYLRNAVKRFNGGVPNVFPVDLFEHIWIVDRLQRLGISR-YF-EEEIKECLDYVHRYWTDNGICWAR-CSHVQDID 296 (727)
T ss_dssp HHHHHHHHHHHHHTTTCCCSSCCCHHHHHHHHHHHHHHTTCGG-GG-HHHHHHHHHHHHHTCCTTCCCSSS-SCSCCCHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCcc-cc-HHHHHHHHHHHHHHhhhcCccccc-CCCCCCHH
Confidence 6889999998865 44444444444444444555677788632 33 4679999999987655444 3431 11356899
Q ss_pred chHHHHHHHHHcCCCCC
Q 044313 111 GTVFNYICMRLLGEGPD 127 (344)
Q Consensus 111 ~T~~ay~AL~l~G~~~~ 127 (344)
+|+++.-.||..|+...
T Consensus 297 ~tAL~FRLLRqhGy~VS 313 (727)
T 3pya_A 297 DTAMAFRLLRQHGYQVS 313 (727)
T ss_dssp HHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHhCCCCCC
Confidence 99999999999998753
No 58
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=54.31 E-value=31 Score=33.30 Aligned_cols=47 Identities=11% Similarity=0.125 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcccCC--CC-----CccccHHHHHHHHH
Q 044313 23 ITPEIATTALRRAVNIFSALQSSHGHWPADN--SG-----PLFFNTPMVICLYI 69 (344)
Q Consensus 23 ~~~~~v~~ai~ra~~~L~~~Q~~DG~W~g~~--~~-----~~~~~a~~v~~l~~ 69 (344)
+..++..+.++++++|+.+.|.++|.|+... +. =+...++.++++..
T Consensus 247 ~~~~~~~~~i~~~l~~l~~~~~~~g~wp~~~~~~~~~~~~wChG~~Gi~~~l~~ 300 (411)
T 3e6u_A 247 VSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQ 300 (411)
T ss_dssp CCHHHHHHTHHHHHHHHHHTCCTTSCCCSBTTCCCCCCCSSSSSHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHhhccCCCCCCCCCcccCccccccCCcHHHHHHHHH
Confidence 3456788999999999999999999997521 11 13445666655433
No 59
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=46.75 E-value=15 Score=36.23 Aligned_cols=92 Identities=12% Similarity=0.095 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHhcC-CCCCcccCC------CCC-cc--ccHH----HHHHHHHhcCCCCCCC---HHHHHHHHHHH
Q 044313 27 IATTALRRAVNIFSALQS-SHGHWPADN------SGP-LF--FNTP----MVICLYITGHLNIIFS---TEHRKEMLRYI 89 (344)
Q Consensus 27 ~v~~ai~ra~~~L~~~Q~-~DG~W~g~~------~~~-~~--~~a~----~v~~l~~lg~~~~~~~---~~~~~~~~~~L 89 (344)
-++.|+++...+...+++ ++|-|.-.+ ..+ .. ..+. ++.++..+.... +.. -+..++++++|
T Consensus 225 y~d~A~~q~~~~~~~l~D~~tGL~~Hg~~~~~~~~~~~~WaRGnGW~~~gl~~~l~~lp~~~-~~r~~l~~~~~~~a~~l 303 (445)
T 3k11_A 225 YLAEAVKQFLQFADRMFIPEKGLYRHGWVESSTDHPAFCWARANGWALLTACELLDVLPEDY-PQRPKVMDYFRAHVRGV 303 (445)
T ss_dssp HHHHHHHHHHHHHHHHEETTTTEECSEEETTCSSCCCCCBHHHHHHHHHHHHHHHHHSCTTC-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCCCEeeeecCCCCCCCcceecccchHHHHHHHHHHHhccccc-ccHHHHHHHHHHHHHHH
Confidence 467777777777777774 578774311 111 11 1222 233344433211 110 14578899999
Q ss_pred HhhccCCCCcccccCCC-c--cccchHHHHHHH
Q 044313 90 CNHQNEDGGWGLHVEGH-S--TMFGTVFNYICM 119 (344)
Q Consensus 90 ~~~Q~~DGGWg~~~~g~-s--~i~~T~~ay~AL 119 (344)
.+.|.+||.|-...+.+ + +.|+|+....||
T Consensus 304 ~~~Q~~~G~W~~vld~~~~y~EsSaTAmfaygl 336 (445)
T 3k11_A 304 TALQSGEGFWHQLLDCNDSYLETSATAIYVYCL 336 (445)
T ss_dssp HTTCCTTSCEESBTTCTTSCEEHHHHHHHHHHH
T ss_pred HHhCCCCCchhhccCCCCCCCCccHHHHHHHHH
Confidence 99999999998766533 2 566666644444
No 60
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=43.52 E-value=31 Score=37.59 Aligned_cols=88 Identities=15% Similarity=0.198 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhc-CCCCCcccCCC--CC-----cc--ccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhcc--CCCCc
Q 044313 32 LRRAVNIFSALQ-SSHGHWPADNS--GP-----LF--FNTPMVICLYITGHLNIIFSTEHRKEMLRYICNHQN--EDGGW 99 (344)
Q Consensus 32 i~ra~~~L~~~Q-~~DG~W~g~~~--~~-----~~--~~a~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~--~DGGW 99 (344)
.++.++||.+.| ++||+|.-.+. +. .- .++..+++++.+...+..+-++.++++++|+.++-+ +-|=|
T Consensus 350 A~~~l~~L~~~Q~~~~G~~~~~y~i~G~~~w~~~Q~D~~g~~l~~~~~~~~~d~~~w~~~v~~al~~i~~~g~~~~~~~W 429 (1020)
T 1ulv_A 350 AARGVEWLFTYQQQPDGHFPQTSRVDGTIGQNGIQLDETAFPILLANQIGRTDAGFYRNELKPAADYLVAAGPKTPQERW 429 (1020)
T ss_dssp HHHHHHHHHHHTCCTTSCCCSCBCTTSCBCCCCCBTHHHHHHHHHHHHHTCCCHHHHHHTHHHHHHHHHHHCSCBSBCTT
T ss_pred HHHHHHHHHHHhcCCCCCeeeEEecCCCcCCCCccCccchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCCChhhh
Confidence 578899999999 89999864331 11 11 223344454444332201101268999999999753 23445
Q ss_pred ccccCCCccccchHHHHHHHHH
Q 044313 100 GLHVEGHSTMFGTVFNYICMRL 121 (344)
Q Consensus 100 g~~~~g~s~i~~T~~ay~AL~l 121 (344)
... +....++.+.+|.||+.
T Consensus 430 Ee~--~g~~~~t~~~~~~AL~~ 449 (1020)
T 1ulv_A 430 EET--GGYSTSTLASQIAALAA 449 (1020)
T ss_dssp SSC--CBEEHHHHHHHHHHHHH
T ss_pred ccc--CCcCHHHHHHHHHHHHH
Confidence 332 22356777888888853
No 61
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=41.93 E-value=63 Score=30.10 Aligned_cols=71 Identities=11% Similarity=0.247 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHh-cCCCCCcccCC--CC-------CccccHHHHHHH----HHhcCCCCCCCHHHHHHHHHHHHh
Q 044313 26 EIATTALRRAVNIFSAL-QSSHGHWPADN--SG-------PLFFNTPMVICL----YITGHLNIIFSTEHRKEMLRYICN 91 (344)
Q Consensus 26 ~~v~~ai~ra~~~L~~~-Q~~DG~W~g~~--~~-------~~~~~a~~v~~l----~~lg~~~~~~~~~~~~~~~~~L~~ 91 (344)
+...++++++++||++. +++||.|.... .| .++-.+.+|.++ .++|... --+..+++.++|.+
T Consensus 73 ~~~~~~A~~~~~~l~~~~~~~~Gg~~~~~d~dg~~~~~~~~~~~~af~i~al~~~y~~tg~~~---~l~~A~~~~~~i~~ 149 (388)
T 2gz6_A 73 ENWLKIARNGAKFLAQHGRDDEGNWYFALTRGGEPLVQPYNIFSDCFAAMAFSQYALASGEEW---AKDVAMQAYNNVLR 149 (388)
T ss_dssp HHHHHHHHHHHHHHHHHSBCTTSCBCSEECTTSCBCCCCCCHHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcccCCcchHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHH
Confidence 45678889999999988 67789886421 11 222334444443 2345311 01346677788888
Q ss_pred hccC-CCCc
Q 044313 92 HQNE-DGGW 99 (344)
Q Consensus 92 ~Q~~-DGGW 99 (344)
+..+ +|.|
T Consensus 150 ~~~d~~g~~ 158 (388)
T 2gz6_A 150 RKDNPKGKY 158 (388)
T ss_dssp C--------
T ss_pred HhcCCCccc
Confidence 7743 4444
No 62
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=36.10 E-value=35 Score=24.54 Aligned_cols=29 Identities=17% Similarity=0.405 Sum_probs=20.8
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccCCCC
Q 044313 62 PMVICLYITGHLNIIFSTEHRKEMLRYICNHQNEDGG 98 (344)
Q Consensus 62 ~~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~DGG 98 (344)
...-+|...|. -++++++||++|..|.-|
T Consensus 35 qA~kALKat~~--------NvErAaDWLFSH~D~~~~ 63 (63)
T 1wgn_A 35 CVLRAMKKKGE--------NIEQILDYLFAHSGPSSG 63 (63)
T ss_dssp HHHHHHHHHCS--------CHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHcCC--------CHHHHHHHHHhCCCCCCC
Confidence 34456666663 379999999999887543
No 63
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=35.32 E-value=16 Score=29.42 Aligned_cols=77 Identities=19% Similarity=0.197 Sum_probs=40.9
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHhhcc-CCCCcccc-cC------CCccccc--hHHHHHHHHHcCCCCCCCC--
Q 044313 63 MVICLYITGHLNIIFSTEHRKEMLRYICNHQN-EDGGWGLH-VE------GHSTMFG--TVFNYICMRLLGEGPDGGE-- 130 (344)
Q Consensus 63 ~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~-~DGGWg~~-~~------g~s~i~~--T~~ay~AL~l~G~~~~~~~-- 130 (344)
...+++.+|. + .++++.||..|+. .|-|--.- .+ +.+.-.. .-..+..|.-+|.+.+...
T Consensus 25 ~~kAl~~~g~-~-------~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~~~~~~~v~~L~eMGF~~~~a~~A 96 (118)
T 4ae4_A 25 VLRAMKAAGA-N-------IEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEV 96 (118)
T ss_dssp HHHHHHHHCS-C-------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHCc-C-------HHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccccccCHHHHHHHHHcCCCHHHHHHH
Confidence 4457777774 3 5889999999974 33332110 00 0000000 1123556777777654100
Q ss_pred ----chHHHHHHHHHHHcCCC
Q 044313 131 ----NSGCTRARKWILDRGGA 147 (344)
Q Consensus 131 ----~p~m~rAr~~Il~~GG~ 147 (344)
+-.+.||.+||.+.-|+
T Consensus 97 L~~~~nd~erAlewL~~~~~~ 117 (118)
T 4ae4_A 97 LLLHNNDQDNALEDLMARAGA 117 (118)
T ss_dssp HHHTTTCHHHHHHHHHHHC--
T ss_pred HHHcCCCHHHHHHHHHHhccc
Confidence 02478899999987765
No 64
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=31.89 E-value=41 Score=34.73 Aligned_cols=87 Identities=13% Similarity=0.213 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhcCCCCCcccCC--CC-----Ccccc--HHHHHHHHHhcCCCCCCCHHH-HHHHHHHHHhhcc--CCCC
Q 044313 31 ALRRAVNIFSALQSSHGHWPADN--SG-----PLFFN--TPMVICLYITGHLNIIFSTEH-RKEMLRYICNHQN--EDGG 98 (344)
Q Consensus 31 ai~ra~~~L~~~Q~~DG~W~g~~--~~-----~~~~~--a~~v~~l~~lg~~~~~~~~~~-~~~~~~~L~~~Q~--~DGG 98 (344)
..++.++||.+.|.+||.|...+ .| ..-++ +..+++++.+...+ + -+. ++++++|+.++-+ ..|=
T Consensus 360 ~a~~~l~~l~~~q~~~G~~~~~~~~~G~p~w~~~Q~D~~g~~l~~~~~~~~~g--~-~~~~v~~al~~i~~~~~~~~~g~ 436 (684)
T 1lf6_A 360 SANRSLDYLAKVVKDNGMIPQNTWISGKPYWTGIQLDEQADPIILSYRLKRYD--L-YDSLVKPLADFIIKIGPKTGQER 436 (684)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSCBCTTSCBCCCCCCHHHHHHHHHHHHHTTCGG--G-TTTTHHHHHHHHHHHCSSBSSCT
T ss_pred HHHHHHHHHHhhcCCCCCcccceeCCCCcccCCccccchHHHHHHHHHHHHcC--c-hHHHHHHHHHHHHHhCCCCCccc
Confidence 35678899999999999874322 11 12222 33444444333211 1 245 9999999999754 2455
Q ss_pred cccccCCCccccchHHHHHHHHHc
Q 044313 99 WGLHVEGHSTMFGTVFNYICMRLL 122 (344)
Q Consensus 99 Wg~~~~g~s~i~~T~~ay~AL~l~ 122 (344)
|... +..+.++.+.+|.||+.+
T Consensus 437 WE~~--~g~~~~t~~~~~~aL~~~ 458 (684)
T 1lf6_A 437 WEEI--GGYSPATMAAEVAGLTCA 458 (684)
T ss_dssp TSSC--CBBCHHHHHHHHHHHHHH
T ss_pred cccc--CCcCHHHHHHHHHHHHHH
Confidence 6432 233466677888888543
No 65
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=29.11 E-value=2.8e+02 Score=28.09 Aligned_cols=57 Identities=19% Similarity=0.220 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhhccC--CCCcccccCCCccccchHHHHHHHHH-------cCCCCCCCCchHHHHHHHHHHH
Q 044313 80 EHRKEMLRYICNHQNE--DGGWGLHVEGHSTMFGTVFNYICMRL-------LGEGPDGGENSGCTRARKWILD 143 (344)
Q Consensus 80 ~~~~~~~~~L~~~Q~~--DGGWg~~~~g~s~i~~T~~ay~AL~l-------~G~~~~~~~~p~m~rAr~~Il~ 143 (344)
+.++++++|+..+.++ -|=|-+. +....++.+.++.||.. +|.+ . +..+++++.|++
T Consensus 157 ~~v~~~l~~v~~~w~~~d~dlWEer--~g~~~~T~~~~~~aL~~aa~lA~~~g~~--~---~~w~~~ad~i~~ 222 (599)
T 2vn4_A 157 PIVRNDLNYVAQYWNQTGFDLWEEV--NGSSFFTVANQHRALVEGATLAATLGQS--G---SAYSSVAPQVLC 222 (599)
T ss_dssp HHHHHHHHHHHHHTTSCEECTTSCC--EEEEHHHHHHHHHHHHHHHHHHHHHTCC--C---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCeeeec--CCcchHHHHHHHHHHHHHHHHHHHcCCC--H---HHHHHHHHHHHH
Confidence 5799999999998774 3666433 23467778888888843 3543 2 445555555553
No 66
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=26.23 E-value=96 Score=28.79 Aligned_cols=91 Identities=13% Similarity=0.305 Sum_probs=49.3
Q ss_pred HHHHHH-HHHHHHH-HHhcCCCCCcccCCC--CC-------ccccHHHHHHH----HH-hcCCCCCCCHHHHHHHHHHHH
Q 044313 27 IATTAL-RRAVNIF-SALQSSHGHWPADNS--GP-------LFFNTPMVICL----YI-TGHLNIIFSTEHRKEMLRYIC 90 (344)
Q Consensus 27 ~v~~ai-~ra~~~L-~~~Q~~DG~W~g~~~--~~-------~~~~a~~v~~l----~~-lg~~~~~~~~~~~~~~~~~L~ 90 (344)
+++.-+ ++.+.|. ...+.++|.+...+. +. +...+-+|.++ .. +|. +.-.+..+++++||+
T Consensus 11 ~~~~~l~~~~l~fw~~~~~D~~GGf~~~~~~d~~~~~~eK~l~~nar~i~~~a~a~~~~~~~---~~~~~~A~~~~~~l~ 87 (388)
T 2gz6_A 11 LYKNALLNDVLPFWENHSLDSEGGYFTCLDRQGKVYDTDKFIWLQNRQVWTFSMLCNQLEKR---ENWLKIARNGAKFLA 87 (388)
T ss_dssp HHHHHHHHTHHHHHHHHCBCTTSSBCCEEBTTSCEEECCEEHHHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHhcCCCCCCCEEeEECCCCCcCCcchhHHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHH
Confidence 344444 5678887 556666777643221 11 12233344332 22 232 111345889999999
Q ss_pred hh-ccCCCCcccccC--C-----CccccchHHHHHHHH
Q 044313 91 NH-QNEDGGWGLHVE--G-----HSTMFGTVFNYICMR 120 (344)
Q Consensus 91 ~~-Q~~DGGWg~~~~--g-----~s~i~~T~~ay~AL~ 120 (344)
++ +.+||||--..+ | ...++.-+++..||.
T Consensus 88 ~~~~~~~Gg~~~~~d~dg~~~~~~~~~~~~af~i~al~ 125 (388)
T 2gz6_A 88 QHGRDDEGNWYFALTRGGEPLVQPYNIFSDCFAAMAFS 125 (388)
T ss_dssp HHSBCTTSCBCSEECTTSCBCCCCCCHHHHHHHHHHHH
T ss_pred HhcCCCCCCEEEEEcCCCCcccCCcchHHHHHHHHHHH
Confidence 98 778999853322 2 344556666666664
No 67
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.65 E-value=66 Score=21.07 Aligned_cols=24 Identities=8% Similarity=0.087 Sum_probs=17.8
Q ss_pred hHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHc
Q 044313 112 TVFNYICMRLLGEGPDGGENSGCTRARKWILDR 144 (344)
Q Consensus 112 T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~ 144 (344)
.-.|..||+..| + +.+|.+||.++
T Consensus 23 ~~~a~~AL~~~~----n-----~e~A~~~L~~h 46 (47)
T 2ekk_A 23 REHAMEALLNTS----T-----MEQATEYLLTH 46 (47)
T ss_dssp HHHHHHHHHHSC----S-----HHHHHHHHHTC
T ss_pred HHHHHHHHHHcC----C-----HHHHHHHHHcC
Confidence 455677888875 3 78899999875
No 68
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=23.86 E-value=1.4e+02 Score=28.17 Aligned_cols=92 Identities=15% Similarity=0.291 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHH-HhcCCCCCcccC--CCCCc--------cccHHHHHH----HHHhcCCCCCCCHHHHHHHHHHHH
Q 044313 26 EIATTALRRAVNIFS-ALQSSHGHWPAD--NSGPL--------FFNTPMVIC----LYITGHLNIIFSTEHRKEMLRYIC 90 (344)
Q Consensus 26 ~~v~~ai~ra~~~L~-~~Q~~DG~W~g~--~~~~~--------~~~a~~v~~----l~~lg~~~~~~~~~~~~~~~~~L~ 90 (344)
.=+.+.+++.+.|-. ..+.++|.+..+ ..+.. ..++-+|.+ ...+|... --+..+++++||.
T Consensus 9 ~~l~~~~~~~l~fw~~~~~D~~GGf~~~l~~dg~~~~~~~k~l~~n~r~i~~~a~a~~~~g~~~---~l~~A~~~~~fl~ 85 (402)
T 3gt5_A 9 DFLRTHISDTMAFYHPRCIDSAGGFFHYFRDDGSIYNATHRHLVSSTRFVFNYAMAYLQFGTAE---YLDAVHHGLSYVR 85 (402)
T ss_dssp HHHHHHHHHHHHHHTTTTBCTTSSBCCEECTTSCEEESSEEEHHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcCeeeEECCCCCCCCCCchhHHHHHHHHHHHHHHHHhhCChH---HHHHHHHHHHHHH
Confidence 345666789999874 566778888653 22332 123333322 22345311 1245788999998
Q ss_pred hhc-cCC-CCcccc-cCC-----CccccchHHHHHHHH
Q 044313 91 NHQ-NED-GGWGLH-VEG-----HSTMFGTVFNYICMR 120 (344)
Q Consensus 91 ~~Q-~~D-GGWg~~-~~g-----~s~i~~T~~ay~AL~ 120 (344)
++- .+| |||.-. .+| ...++.-+.+..||.
T Consensus 86 ~~~~d~~~Gg~~~~~~dG~~~~~~~~lyd~Af~i~al~ 123 (402)
T 3gt5_A 86 DVHRNPATGGYAWTLCDDRVEDDTNHCYGLAFVMLAYS 123 (402)
T ss_dssp HTTBCTTTSCBCSEEETTEEEECCEEHHHHHHHHHHHH
T ss_pred HhCccCCCCcEEEEeeCCCCCcCCcchHHHHHHHHHHH
Confidence 863 456 887532 222 234455555555554
No 69
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.47 E-value=98 Score=23.32 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=20.4
Q ss_pred hHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHcCC
Q 044313 112 TVFNYICMRLLGEGPDGGENSGCTRARKWILDRGG 146 (344)
Q Consensus 112 T~~ay~AL~l~G~~~~~~~~p~m~rAr~~Il~~GG 146 (344)
...|-.||+..+- .+.+|.+||.+++|
T Consensus 43 ~~~A~~AL~~t~g--------dve~A~e~L~sh~~ 69 (83)
T 1veg_A 43 TVVAEAALRVFGG--------NVQLAAQTLAHHGG 69 (83)
T ss_dssp HHHHHHHHHHTTT--------CHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCC--------CHHHHHHHHHhCCC
Confidence 4456667877752 28899999999987
No 70
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.03 E-value=1.1e+02 Score=21.61 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=18.7
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHhhccC
Q 044313 63 MVICLYITGHLNIIFSTEHRKEMLRYICNHQNE 95 (344)
Q Consensus 63 ~v~~l~~lg~~~~~~~~~~~~~~~~~L~~~Q~~ 95 (344)
.+.+|+..+.. -+++++.||++++.+
T Consensus 36 a~~AL~~t~~~-------nve~A~ewL~~~~~d 61 (64)
T 2cpw_A 36 AQKALASTGGR-------SVQTACDWLFSHSGP 61 (64)
T ss_dssp HHHHHHHTTTS-------CHHHHHHHHHSCCSC
T ss_pred HHHHHHHcCCC-------CHHHHHHHHHhCCCC
Confidence 44567766531 268999999999886
No 71
>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET: HEM; 2.30A {Arthrospira maxima} SCOP: a.3.1.1
Probab=20.46 E-value=30 Score=26.84 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=20.8
Q ss_pred CCCHHHHHHHHHHHHhhccC-CCCcc
Q 044313 76 IFSTEHRKEMLRYICNHQNE-DGGWG 100 (344)
Q Consensus 76 ~~~~~~~~~~~~~L~~~Q~~-DGGWg 100 (344)
.++++.++.+++||.+.... +++||
T Consensus 104 ~Ls~~ei~~l~~Yl~~l~~~~~~~w~ 129 (129)
T 1f1c_A 104 NISEDDLYNVAGYILLQPKVRGEQWG 129 (129)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred CCCHHHHHHHHHHHHHcCccccccCC
Confidence 47889999999999997775 56696
No 72
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=20.45 E-value=56 Score=23.23 Aligned_cols=23 Identities=13% Similarity=0.486 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCc
Q 044313 76 IFSTEHRKEMLRYICNHQNEDGGW 99 (344)
Q Consensus 76 ~~~~~~~~~~~~~L~~~Q~~DGGW 99 (344)
.++++.++.+++||.+.++.+| |
T Consensus 67 ~ls~~ei~~l~~yl~~~~~~~~-W 89 (89)
T 1c6r_A 67 TLDDDEIAAVAAYVYDQASGDK-W 89 (89)
T ss_dssp TSCHHHHHHHHHHHHHHHHTTC-C
T ss_pred cCCHHHHHHHHHHHHHHccCCC-C
Confidence 4678999999999999887553 5
Done!