BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044314
         (417 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose
           Translocation Intermediate
          Length = 802

 Score = 32.3 bits (72), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 31  DFLARRVGFKRQEAGSFLLKFPHVFEIYEHPVQRIL 66
           DFLAR VG+  ++   FL++ PH F I   P+QR L
Sbjct: 254 DFLARTVGYFVEDPDLFLVQTPHFF-INPDPIQRNL 288


>pdb|1JLV|A Chain A, Anopheles Dirus Species B Glutathione S-transferases 1-3
 pdb|1JLV|B Chain B, Anopheles Dirus Species B Glutathione S-transferases 1-3
 pdb|1JLV|C Chain C, Anopheles Dirus Species B Glutathione S-transferases 1-3
 pdb|1JLV|D Chain D, Anopheles Dirus Species B Glutathione S-transferases 1-3
 pdb|1JLV|E Chain E, Anopheles Dirus Species B Glutathione S-transferases 1-3
 pdb|1JLV|F Chain F, Anopheles Dirus Species B Glutathione S-transferases 1-3
          Length = 209

 Score = 30.4 bits (67), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 2   EIEKKMRKVLKFQTLFLSQH----NQTLPVSRLDFLARRVGFKRQEAGSFLLKFPHVFEI 57
           E EKKM+  + F   FL  H      +L ++ L  LA    +    AG  L K+PHV   
Sbjct: 125 ENEKKMKDAVDFLNTFLDGHKYVAGDSLTIADLTVLATVSTY--DVAGFELAKYPHVAAW 182

Query: 58  YE 59
           YE
Sbjct: 183 YE 184


>pdb|3KY9|A Chain A, Autoinhibited Vav1
 pdb|3KY9|B Chain B, Autoinhibited Vav1
          Length = 587

 Score = 29.6 bits (65), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 356 TVVHANNGFDNFGVKENAGGDQKGDADLDSDLGSNVESDTSDENDDYDSVETIDAE 411
           T +  N G   F  +E + GD+    D+ S L   ++    ++ D YD VE  +AE
Sbjct: 121 TPIAQNRGIMPFPTEEESVGDE----DIYSGLSDQIDDTVEEDEDLYDCVENEEAE 172


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.138    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,261,618
Number of Sequences: 62578
Number of extensions: 522607
Number of successful extensions: 1078
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1072
Number of HSP's gapped (non-prelim): 12
length of query: 417
length of database: 14,973,337
effective HSP length: 101
effective length of query: 316
effective length of database: 8,652,959
effective search space: 2734335044
effective search space used: 2734335044
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)