BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044314
         (417 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5WY34|RF3_LEGPL Peptide chain release factor 3 OS=Legionella pneumophila (strain
           Lens) GN=prfC PE=3 SV=1
          Length = 526

 Score = 32.3 bits (72), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 14/115 (12%)

Query: 258 RIAHFRLAMNLPKKLKEFLLQHQGIFYISTRGNHGKLHTVFLREAYRKGELLEPNDLYLA 317
           + A     + + K+ K    ++Q I Y+  +G++ K     +     KG         L 
Sbjct: 163 QCAPITWPVGMGKRFKGIYHRYQDIIYLYQQGSNAKK----IDATQIKG---------LD 209

Query: 318 RRKLGELVLMSPRKVKMDTELVRNRRDRHDGGGYM-GRSTVVHANNGFDNFGVKE 371
             +L EL+  S ++++ + ELVR   +  +   Y+ G+ T V+  +  +NFG+KE
Sbjct: 210 NPQLDELIGDSAKELREEIELVRGASNEFNLQDYLAGKMTPVYFGSAINNFGIKE 264


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.138    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,989,418
Number of Sequences: 539616
Number of extensions: 6766663
Number of successful extensions: 25098
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 21493
Number of HSP's gapped (non-prelim): 3592
length of query: 417
length of database: 191,569,459
effective HSP length: 120
effective length of query: 297
effective length of database: 126,815,539
effective search space: 37664215083
effective search space used: 37664215083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)