Query 044314
Match_columns 417
No_of_seqs 144 out of 209
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 13:27:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044314.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044314hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11955 PORR: Plant organelle 100.0 6E-111 1E-115 840.7 30.5 325 1-333 11-335 (335)
2 PF11955 PORR: Plant organelle 99.5 9.7E-13 2.1E-17 133.0 14.8 143 76-287 9-152 (335)
3 PLN03196 MOC1-like protein; Pr 91.9 0.12 2.6E-06 55.4 3.1 49 237-288 324-373 (487)
4 PF06524 NOA36: NOA36 protein; 82.0 2.3 4.9E-05 42.8 4.9 8 132-139 83-90 (314)
5 KOG0943 Predicted ubiquitin-pr 72.2 3 6.4E-05 49.6 3.0 12 361-372 1723-1734(3015)
6 KOG1832 HIV-1 Vpr-binding prot 71.3 3.5 7.6E-05 47.7 3.2 48 98-145 1156-1205(1516)
7 PF04931 DNA_pol_phi: DNA poly 68.9 4.1 9E-05 46.1 3.3 24 310-333 583-606 (784)
8 PF12872 OST-HTH: OST-HTH/LOTU 68.7 11 0.00024 29.3 4.8 55 11-67 8-73 (74)
9 PF06524 NOA36: NOA36 protein; 65.7 9.1 0.0002 38.6 4.5 9 325-333 225-233 (314)
10 KOG2141 Protein involved in hi 64.8 6.2 0.00013 44.6 3.5 59 352-414 219-277 (822)
11 KOG1832 HIV-1 Vpr-binding prot 64.0 7.7 0.00017 45.1 4.1 8 324-331 1394-1401(1516)
12 PLN03196 MOC1-like protein; Pr 57.3 13 0.00029 40.0 4.4 47 92-141 325-371 (487)
13 KOG0943 Predicted ubiquitin-pr 45.3 18 0.0004 43.4 3.2 10 158-167 1389-1398(3015)
14 KOG3241 Uncharacterized conser 45.0 30 0.00064 33.3 4.1 15 317-331 132-146 (227)
15 PF02536 mTERF: mTERF; InterP 43.8 4.5 9.8E-05 40.3 -1.6 118 5-140 154-273 (345)
16 KOG1189 Global transcriptional 34.2 35 0.00076 39.2 3.2 28 294-321 801-832 (960)
17 PHA02608 67 prohead core prote 30.7 34 0.00074 28.6 1.8 20 309-328 8-27 (80)
18 COG3343 RpoE DNA-directed RNA 28.5 1.2E+02 0.0026 28.9 5.2 42 230-271 8-49 (175)
19 KOG2236 Uncharacterized conser 27.5 56 0.0012 35.4 3.2 30 374-403 143-172 (483)
20 KOG2897 DNA-binding protein YL 27.4 34 0.00073 36.1 1.6 36 368-403 46-81 (390)
21 PF04340 DUF484: Protein of un 26.0 49 0.0011 31.6 2.3 19 41-59 8-26 (225)
22 PF04147 Nop14: Nop14-like fam 24.7 69 0.0015 37.1 3.5 7 136-142 104-110 (840)
23 PF02724 CDC45: CDC45-like pro 24.1 51 0.0011 36.8 2.3 10 295-304 76-85 (622)
24 KOG2038 CAATT-binding transcri 22.9 86 0.0019 36.3 3.7 14 94-107 576-589 (988)
25 COG3159 Uncharacterized protei 21.9 1.4E+02 0.0031 29.3 4.6 81 43-126 8-112 (218)
26 KOG1991 Nuclear transport rece 21.8 62 0.0013 38.0 2.4 26 304-330 851-876 (1010)
27 PF04889 Cwf_Cwc_15: Cwf15/Cwc 21.4 39 0.00085 33.5 0.7 7 316-322 58-64 (244)
28 PF04281 Tom22: Mitochondrial 21.3 67 0.0014 29.4 2.1 19 389-408 35-53 (137)
29 KOG3064 RNA-binding nuclear pr 21.0 41 0.00089 34.0 0.7 16 272-287 122-137 (303)
30 KOG2038 CAATT-binding transcri 20.3 97 0.0021 35.9 3.4 51 5-57 320-378 (988)
31 PF09645 F-112: F-112 protein; 20.3 1.5E+02 0.0032 26.0 3.8 55 236-300 10-69 (110)
32 KOG2652 RNA polymerase II tran 20.1 77 0.0017 33.1 2.5 11 208-218 135-145 (348)
No 1
>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts. It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].
Probab=100.00 E-value=6.1e-111 Score=840.74 Aligned_cols=325 Identities=45% Similarity=0.739 Sum_probs=310.0
Q ss_pred ChhhhhhHHHHHHHHHHhcCCCCccchhhHHhhcccCCCCcchhhhHhhhCCCCeEEeccCccccccccCCHHHHHHHHH
Q 044314 1 MEIEKKMRKVLKFQTLFLSQHNQTLPVSRLDFLARRVGFKRQEAGSFLLKFPHVFEIYEHPVQRILYCRLTRKALLQIEQ 80 (417)
Q Consensus 1 ~e~ek~lk~vl~Lk~lI~s~P~~~lpl~~l~k~~~~Lgl~~~~~~~FLrkyP~iF~vf~~p~~~~~~~rLT~~a~~L~~e 80 (417)
|+++|++++|++|+++|+++|+++||++.|++++++|||+..++++||+|||+||++|.||..+++||+||++|++|++|
T Consensus 11 i~~~k~l~~v~~l~~~i~~~p~~~~pl~~l~k~~~~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~~LT~~a~~L~~e 90 (335)
T PF11955_consen 11 IEREKRLRFVLRLKDLILSQPSHSLPLRDLSKLRRQLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWFRLTPEAEDLLRE 90 (335)
T ss_pred HHhhhhHHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCcccHHHHHHhCCceEEEeccCCCCCceEEeCHHHHHHHHH
Confidence 68999999999999999999999999999999999999965679999999999999999999999999999999999999
Q ss_pred HHHHHHhcchHHHHHHHHHhhcCCCceeeHHHHHHHHHhcCCCccchhhhhhcCCCceEEeecCCCCcceEEEeecCCCc
Q 044314 81 EKKALNAQIPEAVTRLRKLLMMSNSGCLRLEHVRIARTEFGLPEDFEYSVVLKNAQFFRLFNAKESTEKYIELVGRDPSL 160 (417)
Q Consensus 81 E~~~~~~~e~~~v~rLrKLLMMS~~rrLpL~kl~~lr~dLGLP~DF~~slv~kyP~~Frvv~~~~~~~~~LeLv~Wdp~L 160 (417)
|.++++++++++|++|+||||||.+++|||++|+|++||||||+||++++|++||++|++|+..+ ++.+||||+|||+|
T Consensus 91 E~~~~~~~e~~~v~rL~KLLMMS~~~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~~-~~~~LeLv~Wd~~L 169 (335)
T PF11955_consen 91 ERRVREEMEPDLVERLRKLLMMSKDRRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVDLED-GGRYLELVSWDPEL 169 (335)
T ss_pred HHHHHHhChHHHHHHHHHHhccCCCCcccHHHHHHHHHHcCCChhhccchhhhCCCCcEEeecCC-CCCEEEEeecCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999443 46899999999999
Q ss_pred chhHHHHHHHHHHHHhCCCccCcccceeeeCCCCCccchhHHHHHHhhhcCCCCCCCCCcCCCCCCCHHHHHhhhHHHHH
Q 044314 161 AVCAIEKVREKEYRERGIDAEDIRFSFLVNFPPGFKIGKYYRIAVWKWQRVPYWSPYEDVSGYDLRSLEAQKRMEKRAVA 240 (417)
Q Consensus 161 AVS~lEk~~~~e~~~~g~~~~~~~~~F~~~fP~Gf~l~k~~r~~l~~fQ~LPyiSPYed~~~ld~~S~e~~~~~EKRaVa 240 (417)
|||++|++++.+++..+......+++|||+||+||++++++++|+++||+|||+|||+|+++++++|++ +||||||
T Consensus 170 Avs~~E~~~~~~~~~~~~~~~~~~~~Fp~~fp~G~~l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s~~----~EKRaVa 245 (335)
T PF11955_consen 170 AVSALEKRAEKEYREKREDGFDRPLAFPVSFPKGFRLKKKFREWLEEFQKLPYISPYEDASHLDPGSDE----AEKRAVA 245 (335)
T ss_pred CcCccchhhhhccccccccccCCceeeeecCCCCccccHHHHHHHHHHhcCCCCCCCCCccCCCCCChH----HHhHHHH
Confidence 999999999876555555555678999999999999999999999999999999999999999999986 5999999
Q ss_pred HHHHHhhccchhhccHHHHHHHHHhcCCcHHHHHHHhhcCCceEEEeeCCCCceeEEEEeeecCCCCccCCChHHHHHHH
Q 044314 241 TIHELLTLTVEKKITLERIAHFRLAMNLPKKLKEFLLQHQGIFYISTRGNHGKLHTVFLREAYRKGELLEPNDLYLARRK 320 (417)
Q Consensus 241 VlHELLSLTveKr~~v~~L~hfr~efgLP~k~~~~L~rHPgIFYvS~Kgn~~k~~TVfLREAY~~g~Liek~Pl~~~R~K 320 (417)
|+||||||||||||++++|+|||++||||++++++|+|||||||||+|| +|+||||||||++|+|||||||+.+|+|
T Consensus 246 VlHElLSLTveKr~~~~~L~~fr~ef~lp~k~~~~l~rHPgIFYvS~kg---~~~TVfLrEAY~~~~Liek~Pl~~~r~k 322 (335)
T PF11955_consen 246 VLHELLSLTVEKRTEVDHLTHFRKEFGLPQKFRRLLLRHPGIFYVSLKG---KRHTVFLREAYDGGELIEKHPLVVIREK 322 (335)
T ss_pred HHHHHHHhhhhhhccHHHHHHHHHHhCCcHHHHHHHHhCCCeEEEeccC---CceEEEEeeccCCCCCCCCCchHHHHHH
Confidence 9999999999999999999999999999999999999999999999996 7999999999999999999999999999
Q ss_pred HHHHHhcCccccc
Q 044314 321 LGELVLMSPRKVK 333 (417)
Q Consensus 321 ~~~L~~~~~r~~~ 333 (417)
|++||.+|+++++
T Consensus 323 ~~~Lm~~~~~~~~ 335 (335)
T PF11955_consen 323 FLELMQEGRRKRN 335 (335)
T ss_pred HHHHHhhcccccC
Confidence 9999999998864
No 2
>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts. It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].
Probab=99.46 E-value=9.7e-13 Score=133.02 Aligned_cols=143 Identities=25% Similarity=0.404 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHhhcCCCceeeHHHHHHHHHhcCCCccchhhhhhcCCCceEEeecCCCCcceEEEee
Q 044314 76 LQIEQEKKALNAQIPEAVTRLRKLLMMSNSGCLRLEHVRIARTEFGLPEDFEYSVVLKNAQFFRLFNAKESTEKYIELVG 155 (417)
Q Consensus 76 ~L~~eE~~~~~~~e~~~v~rLrKLLMMS~~rrLpL~kl~~lr~dLGLP~DF~~slv~kyP~~Frvv~~~~~~~~~LeLv~ 155 (417)
.+++.|+.+. .|.+|+.+|.-++++.|||+.+..++..|||+.-=..+++.+||..|.+...+..+.+++.|+.
T Consensus 9 ~~i~~~k~l~------~v~~l~~~i~~~p~~~~pl~~l~k~~~~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~~LT~ 82 (335)
T PF11955_consen 9 KVIEREKRLR------FVLRLKDLILSQPSHSLPLRDLSKLRRQLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWFRLTP 82 (335)
T ss_pred HHHHhhhhHH------HHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCcccHHHHHHhCCceEEEeccCCCCCceEEeCH
Confidence 3456666666 9999999999999999999999999999999532235899999999999885555677888876
Q ss_pred cCCCcchhHHHHHHHHHHHHhCCCccCcccceeeeCCCCCccchhHHHHHHhhhcCCCCCCCCCcCCCCCCCHHHHHhhh
Q 044314 156 RDPSLAVCAIEKVREKEYRERGIDAEDIRFSFLVNFPPGFKIGKYYRIAVWKWQRVPYWSPYEDVSGYDLRSLEAQKRME 235 (417)
Q Consensus 156 Wdp~LAVS~lEk~~~~e~~~~g~~~~~~~~~F~~~fP~Gf~l~k~~r~~l~~fQ~LPyiSPYed~~~ld~~S~e~~~~~E 235 (417)
-|...++ + | .. +.+.+|
T Consensus 83 ----~a~~L~~---e-E-----------------------------~~--------------------------~~~~~e 99 (335)
T PF11955_consen 83 ----EAEDLLR---E-E-----------------------------RR--------------------------VREEME 99 (335)
T ss_pred ----HHHHHHH---H-H-----------------------------HH--------------------------HHHhCh
Confidence 2221111 0 0 00 011247
Q ss_pred HHHHHHHHHHhhccchhhccHHHHHHHHHhcCCcHHHHHHHh-hcCCceEEEe
Q 044314 236 KRAVATIHELLTLTVEKKITLERIAHFRLAMNLPKKLKEFLL-QHQGIFYIST 287 (417)
Q Consensus 236 KRaVaVlHELLSLTveKr~~v~~L~hfr~efgLP~k~~~~L~-rHPgIFYvS~ 287 (417)
.-+|..|+.||+|+..+++++++|.|++++||||.+|...++ +||+.|-|..
T Consensus 100 ~~~v~rL~KLLMMS~~~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~ 152 (335)
T PF11955_consen 100 PDLVERLRKLLMMSKDRRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVD 152 (335)
T ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHHHHcCCChhhccchhhhCCCCcEEee
Confidence 789999999999999999999999999999999999999977 9999999986
No 3
>PLN03196 MOC1-like protein; Provisional
Probab=91.92 E-value=0.12 Score=55.36 Aligned_cols=49 Identities=10% Similarity=0.324 Sum_probs=35.3
Q ss_pred HHHHHHHHHhhccchhhccHHHHHHHHHhcCCc-HHHHHHHhhcCCceEEEee
Q 044314 237 RAVATIHELLTLTVEKKITLERIAHFRLAMNLP-KKLKEFLLQHQGIFYISTR 288 (417)
Q Consensus 237 RaVaVlHELLSLTveKr~~v~~L~hfr~efgLP-~k~~~~L~rHPgIFYvS~K 288 (417)
++|..+-.+|++..+| ...++..|++ +|++ +.+..|+.++|.++=.|.+
T Consensus 324 ~~v~k~P~il~lSe~k--l~~kvefL~~-~Gls~edI~~mv~k~P~lL~~S~~ 373 (487)
T PLN03196 324 RVIEKLPQIVSLNRNV--ALKHVEFLRG-RGFSAQDVAKMVVRCPQILALNLE 373 (487)
T ss_pred HHHHhcchhhcccHHH--HHHHHHHHHH-cCCCHHHHHHHHHhCCceeeccHH
Confidence 3455566778877654 3457777775 8998 5667888899999988863
No 4
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=81.96 E-value=2.3 Score=42.76 Aligned_cols=8 Identities=25% Similarity=0.517 Sum_probs=4.6
Q ss_pred hcCCCceE
Q 044314 132 LKNAQFFR 139 (417)
Q Consensus 132 ~kyP~~Fr 139 (417)
-+||..|.
T Consensus 83 vkH~g~~~ 90 (314)
T PF06524_consen 83 VKHPGVFT 90 (314)
T ss_pred EecCceee
Confidence 45666664
No 5
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=72.18 E-value=3 Score=49.55 Aligned_cols=12 Identities=17% Similarity=0.077 Sum_probs=6.8
Q ss_pred cCCccccccccC
Q 044314 361 NNGFDNFGVKEN 372 (417)
Q Consensus 361 ~~~~~~~~~~~~ 372 (417)
.+|.|+.|+-+.
T Consensus 1723 regq~~ef~GEe 1734 (3015)
T KOG0943|consen 1723 REGQEGEFAGEE 1734 (3015)
T ss_pred hcCCcccccCcc
Confidence 457777664333
No 6
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=71.27 E-value=3.5 Score=47.67 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=34.2
Q ss_pred HHhhcCCCceeeHHHHHHHHHhcCCCccchhhhhhcCCC--ceEEeecCC
Q 044314 98 KLLMMSNSGCLRLEHVRIARTEFGLPEDFEYSVVLKNAQ--FFRLFNAKE 145 (417)
Q Consensus 98 KLLMMS~~rrLpL~kl~~lr~dLGLP~DF~~slv~kyP~--~Frvv~~~~ 145 (417)
.++..|..-+=||..|+.+..-+|--+.|...=+.++.+ -||++.+..
T Consensus 1156 s~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~ 1205 (1516)
T KOG1832|consen 1156 STQLTSSSSSSPLSALWDASSTGGPRHSFDEDKAVKFSNSLQFRALGTEA 1205 (1516)
T ss_pred ceeeeeccccCchHHHhccccccCccccccccceeehhhhHHHHHhcccc
Confidence 455566667779999999999999888888544455543 577776543
No 7
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=68.94 E-value=4.1 Score=46.13 Aligned_cols=24 Identities=17% Similarity=0.059 Sum_probs=17.7
Q ss_pred CCChHHHHHHHHHHHHhcCccccc
Q 044314 310 EPNDLYLARRKLGELVLMSPRKVK 333 (417)
Q Consensus 310 ek~Pl~~~R~K~~~L~~~~~r~~~ 333 (417)
|++++.++=+=++.|+.-..+-.|
T Consensus 583 e~~~~~vlveiLLslls~~s~llR 606 (784)
T PF04931_consen 583 EPEWSEVLVEILLSLLSQPSALLR 606 (784)
T ss_pred CccHHHHHHHHHHHHHhCcchHHH
Confidence 677888888888888776655544
No 8
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=68.75 E-value=11 Score=29.27 Aligned_cols=55 Identities=25% Similarity=0.317 Sum_probs=34.6
Q ss_pred HHHHHHHhcCCC--CccchhhHHhhcc---------cCCCCcchhhhHhhhCCCCeEEeccCcccccc
Q 044314 11 LKFQTLFLSQHN--QTLPVSRLDFLAR---------RVGFKRQEAGSFLLKFPHVFEIYEHPVQRILY 67 (417)
Q Consensus 11 l~Lk~lI~s~P~--~~lpl~~l~k~~~---------~Lgl~~~~~~~FLrkyP~iF~vf~~p~~~~~~ 67 (417)
-.|+.+|.+.++ +.++++.+...-+ .+|++ .+..||+..|++|++-..+.++..|
T Consensus 8 ~~l~~ll~~~~~~~g~v~ls~l~~~~~~~~~~f~~~~yG~~--~l~~ll~~~~~~~~i~~~~~g~~~~ 73 (74)
T PF12872_consen 8 KLLRELLESQKGEDGWVSLSQLGQEYKKKYPDFDPRDYGFS--SLSELLESLPDVVEIEERQHGGQVY 73 (74)
T ss_dssp HHHHHHHHHTCTTTSSEEHHHHHHHHHHHHTT--TCCTTSS--SHHHHHHT-TTTEEEEEEECCCC--
T ss_pred HHHHHHHHhCcCCCceEEHHHHHHHHHHHCCCCCccccCCC--cHHHHHHhCCCeEEEeeeCCCCcCC
Confidence 346667756654 4789888855422 45553 5889999999999995554444333
No 9
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=65.73 E-value=9.1 Score=38.60 Aligned_cols=9 Identities=44% Similarity=0.457 Sum_probs=4.1
Q ss_pred HhcCccccc
Q 044314 325 VLMSPRKVK 333 (417)
Q Consensus 325 ~~~~~r~~~ 333 (417)
+.||-|.-+
T Consensus 225 LSmStR~hk 233 (314)
T PF06524_consen 225 LSMSTRSHK 233 (314)
T ss_pred ceeeeecch
Confidence 445544433
No 10
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=64.77 E-value=6.2 Score=44.56 Aligned_cols=59 Identities=17% Similarity=0.288 Sum_probs=37.1
Q ss_pred cCccccccccCCccccccccCCCCCCCCCCccCCCcCCCCCCCCCCCCCCccccccccccccc
Q 044314 352 MGRSTVVHANNGFDNFGVKENAGGDQKGDADLDSDLGSNVESDTSDENDDYDSVETIDAEDYD 414 (417)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (417)
.++-.++..+.|++. +++|..++.|+...-+-+++..+|..|+.||+-.+++++.++.|
T Consensus 219 ~e~e~~e~~e~~~~~----~~sgs~~~~e~e~e~~~~de~~e~~~~~~d~d~i~E~~~~~i~~ 277 (822)
T KOG2141|consen 219 FEDEESEDSESGDEE----DDSGSEDEDESEDEKDSVDEEEESEEDNEDDDGISEISNSEIRD 277 (822)
T ss_pred ccccccccccccccc----ccccCcccchhhhhccchhhhhhhhhcccCCccccccccccccC
Confidence 334444444455554 67776666666555566666666666777777777888877765
No 11
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=64.05 E-value=7.7 Score=45.06 Aligned_cols=8 Identities=13% Similarity=0.347 Sum_probs=3.4
Q ss_pred HHhcCccc
Q 044314 324 LVLMSPRK 331 (417)
Q Consensus 324 L~~~~~r~ 331 (417)
+..+|+++
T Consensus 1394 ~yEIGR~r 1401 (1516)
T KOG1832|consen 1394 MYEIGRRR 1401 (1516)
T ss_pred hhhhcccC
Confidence 34444443
No 12
>PLN03196 MOC1-like protein; Provisional
Probab=57.25 E-value=13 Score=40.04 Aligned_cols=47 Identities=19% Similarity=0.332 Sum_probs=31.8
Q ss_pred HHHHHHHHhhcCCCceeeHHHHHHHHHhcCCCccchhhhhhcCCCceEEe
Q 044314 92 AVTRLRKLLMMSNSGCLRLEHVRIARTEFGLPEDFEYSVVLKNAQFFRLF 141 (417)
Q Consensus 92 ~v~rLrKLLMMS~~rrLpL~kl~~lr~dLGLP~DF~~slv~kyP~~Frvv 141 (417)
++.+.-.+|.+|.++. ..++.-++ .+|+..+-..+++.++|+++...
T Consensus 325 ~v~k~P~il~lSe~kl--~~kvefL~-~~Gls~edI~~mv~k~P~lL~~S 371 (487)
T PLN03196 325 VIEKLPQIVSLNRNVA--LKHVEFLR-GRGFSAQDVAKMVVRCPQILALN 371 (487)
T ss_pred HHHhcchhhcccHHHH--HHHHHHHH-HcCCCHHHHHHHHHhCCceeecc
Confidence 4455556666665432 34677776 48888888778888888877663
No 13
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=45.30 E-value=18 Score=43.44 Aligned_cols=10 Identities=40% Similarity=0.640 Sum_probs=5.9
Q ss_pred CCcchhHHHH
Q 044314 158 PSLAVCAIEK 167 (417)
Q Consensus 158 p~LAVS~lEk 167 (417)
|.+|.+|+|.
T Consensus 1389 PkFAk~ALEq 1398 (3015)
T KOG0943|consen 1389 PKFAKLALEQ 1398 (3015)
T ss_pred chHHHHHHHH
Confidence 5566666664
No 14
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.04 E-value=30 Score=33.28 Aligned_cols=15 Identities=20% Similarity=0.155 Sum_probs=7.7
Q ss_pred HHHHHHHHHhcCccc
Q 044314 317 ARRKLGELVLMSPRK 331 (417)
Q Consensus 317 ~R~K~~~L~~~~~r~ 331 (417)
-|+-|+..|.-+.+.
T Consensus 132 ~RRt~lR~m~k~~k~ 146 (227)
T KOG3241|consen 132 DRRTLLRAMNKDNKP 146 (227)
T ss_pred HHHHHHHHHhcccCc
Confidence 455555555554443
No 15
>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []. The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.
Probab=43.82 E-value=4.5 Score=40.29 Aligned_cols=118 Identities=19% Similarity=0.411 Sum_probs=59.0
Q ss_pred hhhHHHHHHHH-HHhcC-CCCccchhhHHhhcccCCCCcchhhhHhhhCCCCeEEeccCccccccccCCHHHHHHHHHHH
Q 044314 5 KKMRKVLKFQT-LFLSQ-HNQTLPVSRLDFLARRVGFKRQEAGSFLLKFPHVFEIYEHPVQRILYCRLTRKALLQIEQEK 82 (417)
Q Consensus 5 k~lk~vl~Lk~-lI~s~-P~~~lpl~~l~k~~~~Lgl~~~~~~~FLrkyP~iF~vf~~p~~~~~~~rLT~~a~~L~~eE~ 82 (417)
+++..++.... ++... ++..-|.- .-+ +.+|++...+...+.++|.++..-.... + .....+...
T Consensus 154 ~~~~~vi~~~P~~l~~~~~~~~~~~v--~~L-~~~G~~~~~i~~~l~~~P~~l~~s~~~~-------l-~~~~~l~~~-- 220 (345)
T PF02536_consen 154 EKIGRVIAKNPRLLLSDSESELKPKV--EFL-RSLGFSKEDIGKLLRKCPRLLSLSVEKI-------L-EPVLYLLSS-- 220 (345)
T ss_dssp HHHCCCHHHHHHHHCGSCCCCCHHHH--HHH-HHCTT-GHHHHHHHHHTTTGGGCGCHC---------------------
T ss_pred hhhcccccccchhhccccHHHHHHHH--HHH-HhhcccchhhhHHhhcccceeccccccc-------c-ccccccccc--
Confidence 45666777774 44444 44433433 233 4689986679999999999997433211 0 001111000
Q ss_pred HHHHhcchHHHHHHHHHhhcCCCceeeHHHHHHHHHhcCCCccchhhhhhcCCCceEE
Q 044314 83 KALNAQIPEAVTRLRKLLMMSNSGCLRLEHVRIARTEFGLPEDFEYSVVLKNAQFFRL 140 (417)
Q Consensus 83 ~~~~~~e~~~v~rLrKLLMMS~~rrLpL~kl~~lr~dLGLP~DF~~slv~kyP~~Frv 140 (417)
... ..+ .++.+.-.+|..+.+.- ..++..++. +|+.++=...++.++|..+..
T Consensus 221 ~~~-~~~-~~i~~~p~il~~~~~~l--~~~i~~L~~-lG~s~~ei~~mv~~~P~iL~~ 273 (345)
T PF02536_consen 221 GGV-EEE-RVIKKFPQILSLSEEKL--KPKIEFLQS-LGFSEEEIAKMVRRFPQILSY 273 (345)
T ss_dssp ------------------THHHHHH--HHHHHHHHT-TT--HHHHHHHHHHSGGGGGS
T ss_pred ccc-ccc-ccccccccccccchHhH--HHHHHHHHH-hcCcHHHHHHHHHhCcchhhc
Confidence 001 011 45556666666664432 357776754 999999888999999998855
No 16
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=34.15 E-value=35 Score=39.16 Aligned_cols=28 Identities=14% Similarity=0.322 Sum_probs=14.9
Q ss_pred eeEEEEeeecCCC-CccCCChHH---HHHHHH
Q 044314 294 LHTVFLREAYRKG-ELLEPNDLY---LARRKL 321 (417)
Q Consensus 294 ~~TVfLREAY~~g-~Liek~Pl~---~~R~K~ 321 (417)
-..||.-.-|++. .-|.-=|+- .+|+.+
T Consensus 801 fDmvfIfKd~~k~v~~i~svp~~sLd~iKEWL 832 (960)
T KOG1189|consen 801 FDMVFIFKDFKKKVTMINSVPMESLDKLKEWL 832 (960)
T ss_pred ceEEEEeccccccceeeeccchhhhhHHHHhh
Confidence 3567777777654 333443443 455554
No 17
>PHA02608 67 prohead core protein; Provisional
Probab=30.66 E-value=34 Score=28.55 Aligned_cols=20 Identities=15% Similarity=0.368 Sum_probs=16.4
Q ss_pred cCCChHHHHHHHHHHHHhcC
Q 044314 309 LEPNDLYLARRKLGELVLMS 328 (417)
Q Consensus 309 iek~Pl~~~R~K~~~L~~~~ 328 (417)
|--+.||.+|..|..+|...
T Consensus 8 IKS~DLV~akK~F~~~Me~r 27 (80)
T PHA02608 8 IKSGDLVEAKKEFASIMEAR 27 (80)
T ss_pred HhcCcHHHHHHHHHHHHHHH
Confidence 44578999999999998863
No 18
>COG3343 RpoE DNA-directed RNA polymerase, delta subunit [Transcription]
Probab=28.47 E-value=1.2e+02 Score=28.95 Aligned_cols=42 Identities=14% Similarity=0.122 Sum_probs=33.0
Q ss_pred HHHhhhHHHHHHHHHHhhccchhhccHHHHHHHHHhcCCcHH
Q 044314 230 AQKRMEKRAVATIHELLTLTVEKKITLERIAHFRLAMNLPKK 271 (417)
Q Consensus 230 ~~~~~EKRaVaVlHELLSLTveKr~~v~~L~hfr~efgLP~k 271 (417)
+++..|.--|.|-|.+|--+-.-..--+-|..+.+.+|+...
T Consensus 8 ~qe~~els~IevA~~ile~~~~~~~F~dii~EI~~~~~~s~~ 49 (175)
T COG3343 8 GQELSELSLIEVAHAILEEKKKPFNFSDIINEIQKLLGVSKE 49 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhCcCHH
Confidence 456778999999999998876655556777888888998754
No 19
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.51 E-value=56 Score=35.38 Aligned_cols=30 Identities=37% Similarity=0.379 Sum_probs=15.3
Q ss_pred CCCCCCCCccCCCcCCCCCCCCCCCCCCcc
Q 044314 374 GGDQKGDADLDSDLGSNVESDTSDENDDYD 403 (417)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
+-.|+.+.+.+++..++.++|.+.+|||.+
T Consensus 143 ~S~g~~d~d~~s~~~~~de~~~d~dddd~~ 172 (483)
T KOG2236|consen 143 SSSGKEDLDKDSDKISEDEDDSDFDDDDVK 172 (483)
T ss_pred ccccccccccccccccCCcccccccccccc
Confidence 445555556555555554444444444433
No 20
>KOG2897 consensus DNA-binding protein YL1 and related proteins [General function prediction only]
Probab=27.39 E-value=34 Score=36.11 Aligned_cols=36 Identities=28% Similarity=0.448 Sum_probs=26.3
Q ss_pred ccccCCCCCCCCCCccCCCcCCCCCCCCCCCCCCcc
Q 044314 368 GVKENAGGDQKGDADLDSDLGSNVESDTSDENDDYD 403 (417)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
-|.+..|..-+.+|.-|+|.+.|+.++++|+-..++
T Consensus 46 ~DeEyE~~~~e~eDe~DsDfs~d~~~~~sDe~sed~ 81 (390)
T KOG2897|consen 46 HDEEYEGEESEEEDEVDSDFSIDETSNESDEESEDD 81 (390)
T ss_pred cchhhhhhhhhhccccccccchhhccccCccccccc
Confidence 345666777778888888998888777777654444
No 21
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=26.02 E-value=49 Score=31.63 Aligned_cols=19 Identities=21% Similarity=0.481 Sum_probs=0.0
Q ss_pred cchhhhHhhhCCCCeEEec
Q 044314 41 RQEAGSFLLKFPHVFEIYE 59 (417)
Q Consensus 41 ~~~~~~FLrkyP~iF~vf~ 59 (417)
...|.+||+++|..|.-+.
T Consensus 8 ~~~V~~yL~~~PdFf~~~~ 26 (225)
T PF04340_consen 8 AEDVAAYLRQHPDFFERHP 26 (225)
T ss_dssp -------------------
T ss_pred HHHHHHHHHhCcHHHHhCH
Confidence 3458899999999998663
No 22
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=24.69 E-value=69 Score=37.06 Aligned_cols=7 Identities=29% Similarity=0.311 Sum_probs=3.1
Q ss_pred CceEEee
Q 044314 136 QFFRLFN 142 (417)
Q Consensus 136 ~~Frvv~ 142 (417)
..|.+-+
T Consensus 104 ~~fnL~d 110 (840)
T PF04147_consen 104 SKFNLED 110 (840)
T ss_pred hccCCCC
Confidence 4444443
No 23
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=24.11 E-value=51 Score=36.77 Aligned_cols=10 Identities=20% Similarity=0.481 Sum_probs=5.7
Q ss_pred eEEEEeeecC
Q 044314 295 HTVFLREAYR 304 (417)
Q Consensus 295 ~TVfLREAY~ 304 (417)
.+||.-++++
T Consensus 76 ~~iyViDshR 85 (622)
T PF02724_consen 76 VTIYVIDSHR 85 (622)
T ss_pred eEEEEEeCCC
Confidence 4566555554
No 24
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=22.87 E-value=86 Score=36.31 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=6.0
Q ss_pred HHHHHHhhcCCCce
Q 044314 94 TRLRKLLMMSNSGC 107 (417)
Q Consensus 94 ~rLrKLLMMS~~rr 107 (417)
.=+++||-.|....
T Consensus 576 AFvKRlLQVa~~q~ 589 (988)
T KOG2038|consen 576 AFVKRLLQVAVQQQ 589 (988)
T ss_pred HHHHHHHHHHHhcC
Confidence 33444444444433
No 25
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.90 E-value=1.4e+02 Score=29.32 Aligned_cols=81 Identities=26% Similarity=0.356 Sum_probs=44.3
Q ss_pred hhhhHhhhCCCCeEEecc---------CccccccccCCHHHHHH-------HHHHHHHHHh----cchHHHHHHHHH-hh
Q 044314 43 EAGSFLLKFPHVFEIYEH---------PVQRILYCRLTRKALLQ-------IEQEKKALNA----QIPEAVTRLRKL-LM 101 (417)
Q Consensus 43 ~~~~FLrkyP~iF~vf~~---------p~~~~~~~rLT~~a~~L-------~~eE~~~~~~----~e~~~v~rLrKL-LM 101 (417)
-|..||+++|..|..+.+ |..+ -++|-+..++. +++|...+-+ ++ .+-.++..| +-
T Consensus 8 ~VadyL~~hPeFf~~h~~Ll~~L~lph~~~~--tVSLve~ql~r~R~~~~~Le~~l~~L~~~A~~N~-~lf~r~~~lq~~ 84 (218)
T COG3159 8 DVADYLRQHPEFFIQHAELLEELRLPHPVAG--TVSLVERQLARLRNRIRELEEELAALMENARANE-RLFYRLHALQLD 84 (218)
T ss_pred HHHHHHHhCcHHHHhCHHHHHHcCCCCCCCC--eeehHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHH
Confidence 488999999999987633 2222 33444444332 1223333321 22 233333322 33
Q ss_pred cCCCcee--eHHHHHH-HHHhcCCCccc
Q 044314 102 MSNSGCL--RLEHVRI-ARTEFGLPEDF 126 (417)
Q Consensus 102 MS~~rrL--pL~kl~~-lr~dLGLP~DF 126 (417)
|+..+.+ -++++.. .+++||+|.-.
T Consensus 85 Ll~a~sl~d~l~~v~~~~a~~f~l~~a~ 112 (218)
T COG3159 85 LLDARSLDDLLRRVDRSWARDFGLAAAS 112 (218)
T ss_pred HHhcccHHHHHHHHHHHHHHHhCCCceE
Confidence 4444444 3788888 99999998644
No 26
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.85 E-value=62 Score=38.04 Aligned_cols=26 Identities=23% Similarity=0.084 Sum_probs=13.3
Q ss_pred CCCCccCCChHHHHHHHHHHHHhcCcc
Q 044314 304 RKGELLEPNDLYLARRKLGELVLMSPR 330 (417)
Q Consensus 304 ~~g~Liek~Pl~~~R~K~~~L~~~~~r 330 (417)
..|.+.+.+-- .+=..++.|..-=++
T Consensus 851 ~~~~~~~e~l~-~l~~~lv~L~~~Lp~ 876 (1010)
T KOG1991|consen 851 QDPQLPSEVLG-QLGPALVELLLSLPE 876 (1010)
T ss_pred ccCCchHHHHH-HHHHHHHHHHHHHHH
Confidence 44555554432 555666666554333
No 27
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=21.42 E-value=39 Score=33.49 Aligned_cols=7 Identities=29% Similarity=0.159 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 044314 316 LARRKLG 322 (417)
Q Consensus 316 ~~R~K~~ 322 (417)
.+|..+.
T Consensus 58 dlr~eLe 64 (244)
T PF04889_consen 58 DLRAELE 64 (244)
T ss_pred HHHHHHH
Confidence 3444443
No 28
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=21.27 E-value=67 Score=29.37 Aligned_cols=19 Identities=42% Similarity=0.634 Sum_probs=8.5
Q ss_pred CCCCCCCCCCCCCccccccc
Q 044314 389 SNVESDTSDENDDYDSVETI 408 (417)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~ 408 (417)
+|.+||++||.|++ +.||+
T Consensus 35 ~d~~sd~~dd~d~e-~dETl 53 (137)
T PF04281_consen 35 TDTDSDISDDSDDE-EDETL 53 (137)
T ss_pred ccccccccccccCC-ccccH
Confidence 34445555433332 44554
No 29
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=21.03 E-value=41 Score=34.02 Aligned_cols=16 Identities=6% Similarity=0.202 Sum_probs=8.1
Q ss_pred HHHHHhhcCCceEEEe
Q 044314 272 LKEFLLQHQGIFYIST 287 (417)
Q Consensus 272 ~~~~L~rHPgIFYvS~ 287 (417)
.+.+-+||-.--||.+
T Consensus 122 ~rklalr~~q~~~vp~ 137 (303)
T KOG3064|consen 122 MRKLALRGRQKKLVPI 137 (303)
T ss_pred HHHHHhccCceEEeec
Confidence 3444555555555553
No 30
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=20.32 E-value=97 Score=35.91 Aligned_cols=51 Identities=20% Similarity=0.262 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHHHhcCCCCccchhhHHhhcccCCCCcchh--------hhHhhhCCCCeEE
Q 044314 5 KKMRKVLKFQTLFLSQHNQTLPVSRLDFLARRVGFKRQEA--------GSFLLKFPHVFEI 57 (417)
Q Consensus 5 k~lk~vl~Lk~lI~s~P~~~lpl~~l~k~~~~Lgl~~~~~--------~~FLrkyP~iF~v 57 (417)
-+.+.+--|.++|.++|.+-- ..|..+-..||=|+.++ ...+++||.+=-|
T Consensus 320 vk~raL~ti~~lL~~kPEqE~--~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~V 378 (988)
T KOG2038|consen 320 VKKRALKTIYDLLTNKPEQEN--NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIV 378 (988)
T ss_pred HHHHHHHHHHHHHhCCcHHHH--HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceee
Confidence 345555666667777776621 11223334455444333 2356667765433
No 31
>PF09645 F-112: F-112 protein; InterPro: IPR018601 This entry is represented by Sulfolobus virus-like particle SSV1, p11. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2VQC_A.
Probab=20.29 E-value=1.5e+02 Score=25.98 Aligned_cols=55 Identities=24% Similarity=0.316 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhccchhhccHHHHHHHH----HhcCCcHHHHHHHh-hcCCceEEEeeCCCCceeEEEEe
Q 044314 236 KRAVATIHELLTLTVEKKITLERIAHFR----LAMNLPKKLKEFLL-QHQGIFYISTRGNHGKLHTVFLR 300 (417)
Q Consensus 236 KRaVaVlHELLSLTveKr~~v~~L~hfr----~efgLP~k~~~~L~-rHPgIFYvS~Kgn~~k~~TVfLR 300 (417)
+-.+.+|.+==-||++ +-|..|- ..+.+ +++.++++ +||++-=+-.|+ +.|||+-
T Consensus 10 ~~l~kiLq~K~Eit~e-----DIlaqfeIS~s~Ay~I-~~~lr~iCe~hq~eC~~~~k~----rKtv~~~ 69 (110)
T PF09645_consen 10 EILYKILQEKKEITLE-----DILAQFEISYSRAYNI-QRVLRKICEQHQDECEVQKKN----RKTVFKW 69 (110)
T ss_dssp HHHHHHHHHHSEE-HH-----HHHHHH---HHHHHHH-HHHHHHHHHH-TTTEEEEE-S----S-EEEEE
T ss_pred HHHHHHHHHcCcCcHH-----HHHHHhccchhhhhHH-HHHHHHHHHhCcchhhhhhcc----chHHHHH
Confidence 3345555555555555 3333331 11222 23445555 999999999996 7899984
No 32
>KOG2652 consensus RNA polymerase II transcription initiation factor TFIIA, large chain [Transcription]
Probab=20.09 E-value=77 Score=33.13 Aligned_cols=11 Identities=45% Similarity=0.622 Sum_probs=7.0
Q ss_pred hhcCCCCCCCC
Q 044314 208 WQRVPYWSPYE 218 (417)
Q Consensus 208 fQ~LPyiSPYe 218 (417)
+|-.|+.+|-.
T Consensus 135 ~q~~p~~~p~s 145 (348)
T KOG2652|consen 135 TQPVPALSPWS 145 (348)
T ss_pred cCCCcCcCccc
Confidence 66667777743
Done!