Query 044314
Match_columns 417
No_of_seqs 144 out of 209
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 23:38:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044314.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044314hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m66_A Mterf3, mterf domain-co 81.6 0.44 1.5E-05 44.9 1.3 41 98-140 138-178 (270)
2 4fp9_B Mterf domain-containing 72.3 2.8 9.6E-05 41.6 4.1 87 36-139 55-142 (335)
3 3m66_A Mterf3, mterf domain-co 70.6 0.33 1.1E-05 45.7 -2.9 91 35-140 49-142 (270)
4 4fp9_B Mterf domain-containing 67.8 0.96 3.3E-05 44.9 -0.4 116 12-140 62-179 (335)
5 3s93_A Tudor domain-containing 62.1 10 0.00035 31.5 4.9 60 1-63 3-73 (102)
6 3mva_O Transcription terminati 48.6 2.3 8E-05 41.5 -1.4 108 16-140 43-153 (343)
7 3rco_A Tudor domain-containing 47.1 23 0.00079 28.9 4.5 50 11-63 16-75 (89)
8 3mva_O Transcription terminati 27.1 2.4 8.3E-05 41.4 -5.3 43 239-287 261-303 (343)
9 2kp6_A Uncharacterized protein 23.4 28 0.00095 28.1 1.2 27 26-52 7-35 (82)
10 2cmx_A ORF F-112, F112, hypoth 19.8 97 0.0033 26.1 3.8 55 236-300 18-77 (118)
No 1
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=81.62 E-value=0.44 Score=44.85 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=24.5
Q ss_pred HHhhcCCCceeeHHHHHHHHHhcCCCccchhhhhhcCCCceEE
Q 044314 98 KLLMMSNSGCLRLEHVRIARTEFGLPEDFEYSVVLKNAQFFRL 140 (417)
Q Consensus 98 KLLMMS~~rrLpL~kl~~lr~dLGLP~DF~~slv~kyP~~Frv 140 (417)
.+|.+|.++. -.++.-+...+|++.+=...++.++|.++..
T Consensus 138 ~il~~s~e~~--~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~ 178 (270)
T 3m66_A 138 RLLTGSLEPV--KENMKVYRLELGFKHNEIQHMITRIPKMLTA 178 (270)
T ss_dssp GGGTSCSHHH--HHHHHHHHHTSCCCHHHHHHHHHHCGGGGTS
T ss_pred cceeechHHH--HHHHHHHHHHcCCCHHHHHHHHHhCChhhee
Confidence 4555655432 2345545667777776666677777776644
No 2
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=72.27 E-value=2.8 Score=41.56 Aligned_cols=87 Identities=13% Similarity=0.102 Sum_probs=53.4
Q ss_pred cCCCCcchhhhHhhhCCCCeEEeccCc-cccccccCCHHHHHHHHHHHHHHHhcchHHHHHHHHHhhcCCCceeeHHHHH
Q 044314 36 RVGFKRQEAGSFLLKFPHVFEIYEHPV-QRILYCRLTRKALLQIEQEKKALNAQIPEAVTRLRKLLMMSNSGCLRLEHVR 114 (417)
Q Consensus 36 ~Lgl~~~~~~~FLrkyP~iF~vf~~p~-~~~~~~rLT~~a~~L~~eE~~~~~~~e~~~v~rLrKLLMMS~~rrLpL~kl~ 114 (417)
.+||.+..++++|.++|.++..-..+. .-...++|++.+. ..++.+=-.+|++|..+- -.+|.
T Consensus 55 d~Gfs~~~i~~il~~~P~il~~~l~~~i~~L~~LGls~e~V--------------~kiL~k~P~lL~~s~e~L--~~~l~ 118 (335)
T 4fp9_B 55 DMGFSNAHINELLSVRRGASLQQLLDIISEFILLGLNPEPV--------------CVVLKKSPQLLKLPIMQM--RKRSS 118 (335)
T ss_dssp HTTCCHHHHHHHHHHCSSCCHHHHHHHHHHHHHTTCCHHHH--------------HHHHHHCGGGGGSCHHHH--HHHHH
T ss_pred HCCCCHHHHHHHHHhCcccchhHHHHHHHHHHHcCCCHHHH--------------HHHHHhChhhccCCHHHH--HHHHH
Confidence 689987789999999999873211000 0000112222211 113333334777877652 24677
Q ss_pred HHHHhcCCCccchhhhhhcCCCceE
Q 044314 115 IARTEFGLPEDFEYSVVLKNAQFFR 139 (417)
Q Consensus 115 ~lr~dLGLP~DF~~slv~kyP~~Fr 139 (417)
.++. +||+.+-...++.++|.++.
T Consensus 119 fL~~-lGl~~~~i~~ll~~~P~lL~ 142 (335)
T 4fp9_B 119 YLQK-LGLGEGKLKRVLYCCPEIFT 142 (335)
T ss_dssp HHHH-TTCTTTTHHHHHHHCGGGGT
T ss_pred HHHH-cCCCHHHHHHHHHhCchhhc
Confidence 7755 99999888899999999874
No 3
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=70.59 E-value=0.33 Score=45.73 Aligned_cols=91 Identities=18% Similarity=0.200 Sum_probs=57.1
Q ss_pred ccCCCCcchhhhHhhhCCCCeEEeccCccccccccCCHHHHHHHHHHHHHHHhcchHHHHHH---HHHhhcCCCceeeHH
Q 044314 35 RRVGFKRQEAGSFLLKFPHVFEIYEHPVQRILYCRLTRKALLQIEQEKKALNAQIPEAVTRL---RKLLMMSNSGCLRLE 111 (417)
Q Consensus 35 ~~Lgl~~~~~~~FLrkyP~iF~vf~~p~~~~~~~rLT~~a~~L~~eE~~~~~~~e~~~v~rL---rKLLMMS~~rrLpL~ 111 (417)
..+|++...+.+.|.++|.+|..-.+ .+.+...-+ . +. --...+++.-+ -.+|.+|.++ --.
T Consensus 49 ~~lG~~~~~i~~il~~~P~lL~~~~e--------~l~p~v~~L-~-~~---Gls~~~i~~~l~~~P~lL~~s~~~--l~~ 113 (270)
T 3m66_A 49 KDVGIEDNQLGAFLTKNHAIFSEDLE--------NLKTRVAYL-H-SK---NFSKADVAQMVRKAPFLLNFSVER--LDN 113 (270)
T ss_dssp HHHTCCGGGHHHHHHHCTTGGGSCHH--------HHHHHHHHH-H-HT---TCCHHHHHHHHHHSTTGGGSCHHH--HHH
T ss_pred HHcCCCHHHHHHHHHhCChhhhCCHH--------HHHHHHHHH-H-Hc---CCCHHHHHHHHHhCCHHHcCCHHH--HHH
Confidence 46999877799999999999963211 122222211 1 11 11122222222 3467777664 235
Q ss_pred HHHHHHHhcCCCccchhhhhhcCCCceEE
Q 044314 112 HVRIARTEFGLPEDFEYSVVLKNAQFFRL 140 (417)
Q Consensus 112 kl~~lr~dLGLP~DF~~slv~kyP~~Frv 140 (417)
.+..++.++|+|.+=...++.+||..+..
T Consensus 114 ~v~~L~~~lG~~~~~i~~ll~~~P~il~~ 142 (270)
T 3m66_A 114 RLGFFQKELELSVKKTRDLVVRLPRLLTG 142 (270)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHSGGGGTS
T ss_pred HHHHHHHHhCCCHHHHHHHHHhCCcceee
Confidence 77788789999998888999999998754
No 4
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=67.77 E-value=0.96 Score=44.94 Aligned_cols=116 Identities=10% Similarity=0.108 Sum_probs=71.1
Q ss_pred HHHHHHhcCCCCccchhhHH--hhcccCCCCcchhhhHhhhCCCCeEEeccCccccccccCCHHHHHHHHHHHHHHHhcc
Q 044314 12 KFQTLFLSQHNQTLPVSRLD--FLARRVGFKRQEAGSFLLKFPHVFEIYEHPVQRILYCRLTRKALLQIEQEKKALNAQI 89 (417)
Q Consensus 12 ~Lk~lI~s~P~~~lpl~~l~--k~~~~Lgl~~~~~~~FLrkyP~iF~vf~~p~~~~~~~rLT~~a~~L~~eE~~~~~~~e 89 (417)
.|..+|..+|.- ++-.... ..-..|||+...+.+.|.++|.|+..-.. +|.+...-| ++..+-...-
T Consensus 62 ~i~~il~~~P~i-l~~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e--------~L~~~l~fL--~~lGl~~~~i 130 (335)
T 4fp9_B 62 HINELLSVRRGA-SLQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM--------QMRKRSSYL--QKLGLGEGKL 130 (335)
T ss_dssp HHHHHHHHCSSC-CHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH--------HHHHHHHHH--HHTTCTTTTH
T ss_pred HHHHHHHhCccc-chhHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH--------HHHHHHHHH--HHcCCCHHHH
Confidence 567888889863 3222111 22235899877799999999999853221 244443322 2222211122
Q ss_pred hHHHHHHHHHhhcCCCceeeHHHHHHHHHhcCCCccchhhhhhcCCCceEE
Q 044314 90 PEAVTRLRKLLMMSNSGCLRLEHVRIARTEFGLPEDFEYSVVLKNAQFFRL 140 (417)
Q Consensus 90 ~~~v~rLrKLLMMS~~rrLpL~kl~~lr~dLGLP~DF~~slv~kyP~~Frv 140 (417)
..++.+.-.||.+|..+. ..++..++..+|+..+=...++.++|.++..
T Consensus 131 ~~ll~~~P~lL~~s~e~i--~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~ 179 (335)
T 4fp9_B 131 KRVLYCCPEIFTMRQQDI--NDTVRLLKEKCLFTVQQVTKILHSCPSVLRE 179 (335)
T ss_dssp HHHHHHCGGGGTSCHHHH--HHHHHHHHHTSCCCHHHHHHHHHHCGGGGTS
T ss_pred HHHHHhCchhhccChHHH--HHHHHHHHHHcCCCHHHHHHHHHhCChhhhC
Confidence 234444445676666542 2356678889999998888999999998754
No 5
>3s93_A Tudor domain-containing protein 5; structural genomics consortium, SGC, transcription; 2.28A {Homo sapiens}
Probab=62.13 E-value=10 Score=31.51 Aligned_cols=60 Identities=18% Similarity=0.278 Sum_probs=42.2
Q ss_pred ChhhhhhHHHHH-HHHHHhcCCCCccchhhHHhhcc----------cCCCCcchhhhHhhhCCCCeEEeccCcc
Q 044314 1 MEIEKKMRKVLK-FQTLFLSQHNQTLPVSRLDFLAR----------RVGFKRQEAGSFLLKFPHVFEIYEHPVQ 63 (417)
Q Consensus 1 ~e~ek~lk~vl~-Lk~lI~s~P~~~lpl~~l~k~~~----------~Lgl~~~~~~~FLrkyP~iF~vf~~p~~ 63 (417)
||+|+-|..|-+ |+.+|.|.++ -+|++.|.+-.+ .||++ .+.+||+--|.++++...+.+
T Consensus 3 ~~~~~~l~~vkk~irslLiS~K~-gvtl~~L~~dYr~~~G~~iP~r~lGy~--sl~~fL~sipdvv~~~~~~~G 73 (102)
T 3s93_A 3 SEQERIQECLRKEIRSLLISTKD-GLSPQELEKEYLLMVGNHLPLRILGYR--STMELVLDMPDVVRVCPGAGG 73 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSS-CBCHHHHHHHHHHHHSSCCCTGGGTCS--SHHHHHHTCTTTEEEECCGGG
T ss_pred ccHHHHHHHHHHHHHHhheeCCC-CcCHHHHHHHHHHHcCCcCCchhcCcC--CHHHHHHcCCCeEEEEecCCC
Confidence 567777777655 5667777776 578888865443 45553 478999999999987655443
No 6
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=48.59 E-value=2.3 Score=41.50 Aligned_cols=108 Identities=15% Similarity=0.177 Sum_probs=61.2
Q ss_pred HHhcCCCCccchhhHHhhcccCCCCcchhhhHhhhCCCCeEEeccCccccccccCCHHHHHHHHHHHHHHHhcchH---H
Q 044314 16 LFLSQHNQTLPVSRLDFLARRVGFKRQEAGSFLLKFPHVFEIYEHPVQRILYCRLTRKALLQIEQEKKALNAQIPE---A 92 (417)
Q Consensus 16 lI~s~P~~~lpl~~l~k~~~~Lgl~~~~~~~FLrkyP~iF~vf~~p~~~~~~~rLT~~a~~L~~eE~~~~~~~e~~---~ 92 (417)
++..+|.. |-..++-+ +.+|++...+.+.+.+||.++..- +. .+.|...-+ . -+--...+ +
T Consensus 43 l~~~s~~~--~~~vl~fL-~~~G~s~~~i~~iv~~~P~lL~~~--~~------~l~p~l~fL-~----~lG~s~~~i~~i 106 (343)
T 3mva_O 43 VFHRMITN--EQDLKMFL-LSKGASKEVIASIISRYPRAITRT--PE------NLSKRWDLW-R----KIVTSDLEIVNI 106 (343)
T ss_dssp GGGCSCCC--HHHHHHHH-HHTTCCHHHHHHHHHHCGGGGGCC--HH------HHHHHHHHH-T----TTSSCHHHHHHH
T ss_pred hhccCccc--HHHHHHHH-HHcCCCHHHHHHHHHhCcHHHhCC--HH------HHHHHHHHH-H----HcCCCHHHHHHH
Confidence 34455554 23334444 489997667999999999998522 21 122221111 0 00011122 2
Q ss_pred HHHHHHHhhcCCCceeeHHHHHHHHHhcCCCccchhhhhhcCCCceEE
Q 044314 93 VTRLRKLLMMSNSGCLRLEHVRIARTEFGLPEDFEYSVVLKNAQFFRL 140 (417)
Q Consensus 93 v~rLrKLLMMS~~rrLpL~kl~~lr~dLGLP~DF~~slv~kyP~~Frv 140 (417)
+.+--.+|+-+....--...|.-++ ++|+|.+-..+++.++|..|..
T Consensus 107 l~~~P~iLl~s~~~~~l~p~v~fL~-~lGl~~~~i~~ll~~~P~il~~ 153 (343)
T 3mva_O 107 LERSPESFFRSNNNLNLENNIKFLY-SVGLTRKCLCRLLTNAPRTFSN 153 (343)
T ss_dssp HHHCSHHHHSCCCHHHHHHHHHHHH-HTTCCHHHHHHHHHHCGGGGTS
T ss_pred HHHCCHHHhCCChHhhHHHHHHHHH-HhCCCHHHHHHHHHhCChhhee
Confidence 2233334555555322233677775 8999999999999999998854
No 7
>3rco_A Tudor domain-containing protein 7; structural genomics, structural genomics consortium, SGC, HL DNA binding protein; 1.80A {Homo sapiens} PDB: 2lh9_A
Probab=47.09 E-value=23 Score=28.88 Aligned_cols=50 Identities=22% Similarity=0.329 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCCCccchhhHHhhcc----------cCCCCcchhhhHhhhCCCCeEEeccCcc
Q 044314 11 LKFQTLFLSQHNQTLPVSRLDFLAR----------RVGFKRQEAGSFLLKFPHVFEIYEHPVQ 63 (417)
Q Consensus 11 l~Lk~lI~s~P~~~lpl~~l~k~~~----------~Lgl~~~~~~~FLrkyP~iF~vf~~p~~ 63 (417)
.-|+.+|.|.|++ +|++.|.+-.+ +||++ .+.+||+--|.++.+-..+.+
T Consensus 16 k~iRslL~S~k~g-vtl~~L~~DYr~l~G~~iP~r~lGy~--sl~~fL~siPdvv~~~~~~~G 75 (89)
T 3rco_A 16 KMLRAVLQSHKNG-VALPRLQGEYRSLTGDWIPFKQLGFP--TLEAYLRSVPAVVRIETSRSG 75 (89)
T ss_dssp HHHHHHHHTCTTC-EEHHHHHHHHHHHHSSCCCTTTTTCS--SHHHHHHTCTTTEEEEECTTS
T ss_pred HHHHHHhhcCCCC-CCHHHHHHHHHHHhCCcCChhhhCcc--cHHHHHhcccCeEEEEecCCC
Confidence 3467888898877 78888765433 46663 488999999999996443333
No 8
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=27.13 E-value=2.4 Score=41.37 Aligned_cols=43 Identities=14% Similarity=0.188 Sum_probs=32.2
Q ss_pred HHHHHHHhhccchhhccHHHHHHHHHhcCCcHHHHHHHhhcCCceEEEe
Q 044314 239 VATIHELLTLTVEKKITLERIAHFRLAMNLPKKLKEFLLQHQGIFYIST 287 (417)
Q Consensus 239 VaVlHELLSLTveKr~~v~~L~hfr~efgLP~k~~~~L~rHPgIFYvS~ 287 (417)
|...-.+|.+..+| ...++.-|.+ +|+|.+ .++++|.+|-.|+
T Consensus 261 v~~~P~il~~s~~~--l~~k~~fl~~-mg~~~~---~i~~~P~~l~~sl 303 (343)
T 3mva_O 261 VLSYPDVIFLAEKK--FNDKIDCLME-ENISIS---QIIENPRVLDSSI 303 (343)
T ss_dssp HHTCGGGGGSCHHH--HHHHHHHHHT-TTCCHH---HHHHSGGGGGSCH
T ss_pred HHhCCchhcccHHH--HHHHHHHHHH-cCCCHH---HHHhCCHHHhcCH
Confidence 33334788888876 6778888888 999875 4678898888774
No 9
>2kp6_A Uncharacterized protein; unknown function, structural genomics, PSI-2, protein struct initiative; NMR {Chromobacterium violaceum}
Probab=23.40 E-value=28 Score=28.13 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=22.1
Q ss_pred chhhHHhhcccCCCCcc--hhhhHhhhCC
Q 044314 26 PVSRLDFLARRVGFKRQ--EAGSFLLKFP 52 (417)
Q Consensus 26 pl~~l~k~~~~Lgl~~~--~~~~FLrkyP 52 (417)
+...++.+..+|||+.. .+.+||.+||
T Consensus 7 ~~h~l~~LF~QLGL~s~~~~I~~FI~~H~ 35 (82)
T 2kp6_A 7 SNHLLPGLFRQLGLEDEPAAIRAFIDSHP 35 (82)
T ss_dssp TCTHHHHHHHHHTSCCCHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHhCCCCCHHHHHHHHHhCC
Confidence 55678899999999644 3789999997
No 10
>2cmx_A ORF F-112, F112, hypothetical 13.2 kDa protein; sulfolobus spindle virus, thermophilic protein, hypothetical protein; 2.30A {Sulfolobus virus-like particle SSV1} PDB: 2vqc_A
Probab=19.79 E-value=97 Score=26.07 Aligned_cols=55 Identities=18% Similarity=0.229 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhccchhhccHHHHHHHH----HhcCCcHHHHHHHh-hcCCceEEEeeCCCCceeEEEEe
Q 044314 236 KRAVATIHELLTLTVEKKITLERIAHFR----LAMNLPKKLKEFLL-QHQGIFYISTRGNHGKLHTVFLR 300 (417)
Q Consensus 236 KRaVaVlHELLSLTveKr~~v~~L~hfr----~efgLP~k~~~~L~-rHPgIFYvS~Kgn~~k~~TVfLR 300 (417)
+-.+.+|.+==-||++ +-|..|- ..+.+ +++.++++ +||++-=+-.|+ +.|||+-
T Consensus 18 e~l~kiLq~K~Eit~e-----DIlaqfeIS~s~Ay~I-~~~lk~iCE~h~~eC~~~~K~----rKtv~~~ 77 (118)
T 2cmx_A 18 EIMYKILEKKGELTLE-----DILAQFEISVPSAYNI-QRALKAICERHPDECEVQYKN----RKTTFKW 77 (118)
T ss_dssp HHHHHHHHHHSEECHH-----HHHHHHCCCHHHHHHH-HHHHHHHHHHCTTTEEEEECS----SCEEEEE
T ss_pred HHHHHHHHHcCcCcHH-----HHHHHhccchhhhhHH-HHHHHHHHHhCcchhhhhhcc----chHHHHH
Confidence 3445555555555555 3344431 11111 24455666 999999999996 7899984
Done!