Query 044314
Match_columns 417
No_of_seqs 144 out of 209
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 23:39:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044314.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044314hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3ctaa1 a.4.5.28 (A:5-89) Ta10 14.7 35 0.0026 24.8 1.9 70 9-84 6-78 (85)
2 d1sfka_ a.190.1.1 (A:) Flavivi 10.7 36 0.0026 25.1 0.8 19 249-267 47-65 (73)
3 d3broa1 a.4.5.28 (A:3-137) Tra 10.7 72 0.0052 24.0 2.8 68 12-82 33-103 (135)
4 d1gpma1 c.26.2.1 (A:208-404) G 10.3 74 0.0054 24.4 2.7 24 254-280 172-195 (197)
5 d2frha1 a.4.5.28 (A:102-216) P 8.9 1.4E+02 0.01 22.1 3.9 63 15-80 40-105 (115)
6 d1riqa1 a.203.1.1 (A:237-457) 8.0 4E+02 0.029 22.3 7.0 61 73-133 104-167 (221)
7 d2icga1 d.369.1.1 (A:1-158) Un 7.7 2.4E+02 0.017 21.6 4.9 40 244-283 16-57 (158)
8 d1nlna_ d.3.1.7 (A:) Human ade 7.7 4.7E+02 0.034 22.0 7.1 62 112-198 6-77 (203)
9 d1bl0a1 a.4.1.8 (A:9-62) MarA 7.5 1.2E+02 0.0088 19.4 2.5 40 8-50 3-42 (54)
10 d1icha_ a.77.1.2 (A:) Tumor ne 7.3 63 0.0046 23.1 0.9 31 108-138 11-41 (87)
No 1
>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=14.73 E-value=35 Score=24.85 Aligned_cols=70 Identities=19% Similarity=0.139 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCCCCccchhhHHhhcccCCCCcchhhhHhhh---CCCCeEEeccCccccccccCCHHHHHHHHHHHHH
Q 044314 9 KVLKFQTLFLSQHNQTLPVSRLDFLARRVGFKRQEAGSFLLK---FPHVFEIYEHPVQRILYCRLTRKALLQIEQEKKA 84 (417)
Q Consensus 9 ~vl~Lk~lI~s~P~~~lpl~~l~k~~~~Lgl~~~~~~~FLrk---yP~iF~vf~~p~~~~~~~rLT~~a~~L~~eE~~~ 84 (417)
.+-.|+.+-..+.+..|+.. .+.+.+|+.+..+.+.|.+ -=.|-. .+.++..++.||++..+++.+....
T Consensus 6 ~l~~l~~~~~~~~~~~lt~~---eLa~~l~i~~~~vs~~l~~Le~~GlV~r---~~D~R~~~i~LT~~G~~~l~~~~~~ 78 (85)
T d3ctaa1 6 AIKKIKEAAEASNRAYLTSS---KLADMLGISQQSASRIIIDLEKNGYITR---TVTKRGQILNITEKGLDVLYTEFAD 78 (85)
T ss_dssp HHHHHHHHTTTSSEEECCHH---HHHHHHTSCHHHHHHHHHHHHHTTSEEE---EEETTEEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccCCCCCCHH---HHHHHHCCCHHHHHHHHHHHHHCCCeee---ecccccccceECHHHHHHHHHHHHH
Confidence 33444443333334456666 4557889865445443332 112211 1245666789999999988776543
No 2
>d1sfka_ a.190.1.1 (A:) Flavivirus capsid protein C {Kunjin virus [TaxId: 11077]}
Probab=10.75 E-value=36 Score=25.06 Aligned_cols=19 Identities=16% Similarity=0.480 Sum_probs=17.1
Q ss_pred cchhhccHHHHHHHHHhcC
Q 044314 249 TVEKKITLERIAHFRLAMN 267 (417)
Q Consensus 249 TveKr~~v~~L~hfr~efg 267 (417)
+|.|...+.+|..||+|.|
T Consensus 47 ~v~K~~A~k~L~~FKKeig 65 (73)
T d1sfka_ 47 SVNKQTAMKHLLSFKKELG 65 (73)
T ss_dssp TSCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 5889999999999999986
No 3
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=10.71 E-value=72 Score=24.00 Aligned_cols=68 Identities=12% Similarity=-0.010 Sum_probs=43.1
Q ss_pred HHHHHHhcCCCCccchhhHHhhcccCCCCcch---hhhHhhhCCCCeEEeccCccccccccCCHHHHHHHHHHH
Q 044314 12 KFQTLFLSQHNQTLPVSRLDFLARRVGFKRQE---AGSFLLKFPHVFEIYEHPVQRILYCRLTRKALLQIEQEK 82 (417)
Q Consensus 12 ~Lk~lI~s~P~~~lpl~~l~k~~~~Lgl~~~~---~~~FLrkyP~iF~vf~~p~~~~~~~rLT~~a~~L~~eE~ 82 (417)
.+-..|..+|++.+++..|. +.+|+.+.. +..-|.+-=-|-.......++...+.||++...++.+=.
T Consensus 33 ~vL~~l~~~~~~~it~~ela---~~~~~~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~~~~~ 103 (135)
T d3broa1 33 TIIDYLSRNKNKEVLQRDLE---SEFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETIIL 103 (135)
T ss_dssp HHHHHHHHTTTSCCBHHHHH---HHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHH---HHHCcCHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccHHHHHHHHHHH
Confidence 34456677888878877554 677875333 344455555555554444567778899999887655433
No 4
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]}
Probab=10.28 E-value=74 Score=24.41 Aligned_cols=24 Identities=21% Similarity=0.484 Sum_probs=18.5
Q ss_pred ccHHHHHHHHHhcCCcHHHHHHHhhcC
Q 044314 254 ITLERIAHFRLAMNLPKKLKEFLLQHQ 280 (417)
Q Consensus 254 ~~v~~L~hfr~efgLP~k~~~~L~rHP 280 (417)
+..+.+..+.+++|||+. ++.|||
T Consensus 172 l~K~eV~~lA~~lglP~~---i~~~~p 195 (197)
T d1gpma1 172 LFKDEVRKIGLELGLPYD---MLYRHP 195 (197)
T ss_dssp CCHHHHHHHHHHTTCCHH---HHTSCC
T ss_pred CcHHHHHHHHHHcCCCHH---HhCCCC
Confidence 345678889999999998 445777
No 5
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}
Probab=8.86 E-value=1.4e+02 Score=22.08 Aligned_cols=63 Identities=11% Similarity=0.083 Sum_probs=39.6
Q ss_pred HHHhcCCCCccchhhHHhhcccCCCCcch---hhhHhhhCCCCeEEeccCccccccccCCHHHHHHHHH
Q 044314 15 TLFLSQHNQTLPVSRLDFLARRVGFKRQE---AGSFLLKFPHVFEIYEHPVQRILYCRLTRKALLQIEQ 80 (417)
Q Consensus 15 ~lI~s~P~~~lpl~~l~k~~~~Lgl~~~~---~~~FLrkyP~iF~vf~~p~~~~~~~rLT~~a~~L~~e 80 (417)
..|..+|++.+++. .+.+.+++.+.. ++.-|.+--.|-..-....++..++.||++..+.+.+
T Consensus 40 ~~l~~~~~~~~t~~---~la~~l~~~~~tvs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~ 105 (115)
T d2frha1 40 TYISENKEKEYYLK---DIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIES 105 (115)
T ss_dssp HHHHHTCCSEEEHH---HHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHH
T ss_pred HHHHcCCCCCCCHH---HHHHHHCCCHhHHHHHHHHHHhhhhheeeecccCCceEEEEECHHHHHHHHH
Confidence 34666777777766 555788885333 3444555555544333334677889999999877544
No 6
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
Probab=8.02 E-value=4e+02 Score=22.34 Aligned_cols=61 Identities=13% Similarity=0.168 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHhh---cCCCceeeHHHHHHHHHhcCCCccchhhhhhc
Q 044314 73 KALLQIEQEKKALNAQIPEAVTRLRKLLM---MSNSGCLRLEHVRIARTEFGLPEDFEYSVVLK 133 (417)
Q Consensus 73 ~a~~L~~eE~~~~~~~e~~~v~rLrKLLM---MS~~rrLpL~kl~~lr~dLGLP~DF~~slv~k 133 (417)
....++..|.......-..-...|.+++. -+..+.||-..+..|---+|||.|....++..
T Consensus 104 ~I~~ii~~EE~~f~~tl~~G~~~~~~~i~~~~~~~~~~l~g~~af~LydTyGfP~elt~eia~e 167 (221)
T d1riqa1 104 FVKGIVKGEEKRFIKTLKAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIARE 167 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHTSCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHccccCHHHHHHHHHH
Confidence 34556677777776555455555555553 35578999999999999999999998766554
No 7
>d2icga1 d.369.1.1 (A:1-158) Uncharacterized protein Lin2918 {Listeria innocua [TaxId: 1642]}
Probab=7.70 E-value=2.4e+02 Score=21.60 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=31.3
Q ss_pred HHhhccchhhccHHHHHHHHHhcC--CcHHHHHHHhhcCCce
Q 044314 244 ELLTLTVEKKITLERIAHFRLAMN--LPKKLKEFLLQHQGIF 283 (417)
Q Consensus 244 ELLSLTveKr~~v~~L~hfr~efg--LP~k~~~~L~rHPgIF 283 (417)
+.--++....++-+.|..|-+.|| ||..++.+|.+|=|.-
T Consensus 16 ~~~~~~~~~~at~E~I~~~E~~LG~~lP~~Yr~fL~~~ng~~ 57 (158)
T d2icga1 16 SGITFHASGTGTPELIKIYQDALGNEFPETYKLFLEKYGTLT 57 (158)
T ss_dssp CCSCCBCCCCCCHHHHHHHHHHHTCCCCHHHHHHHHHTSSEE
T ss_pred cCCccccCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHcCCcc
Confidence 333455667788888999988887 7999999999997653
No 8
>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain {Mastadenovirus H2 [TaxId: 10515]}
Probab=7.68 E-value=4.7e+02 Score=21.99 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=45.4
Q ss_pred HHHHHHHhcCCCccchhhhhhcCCCce-------EEeecCC---CCcceEEEeecCCCcchhHHHHHHHHHHHHhCCCcc
Q 044314 112 HVRIARTEFGLPEDFEYSVVLKNAQFF-------RLFNAKE---STEKYIELVGRDPSLAVCAIEKVREKEYRERGIDAE 181 (417)
Q Consensus 112 kl~~lr~dLGLP~DF~~slv~kyP~~F-------rvv~~~~---~~~~~LeLv~Wdp~LAVS~lEk~~~~e~~~~g~~~~ 181 (417)
-|.+|-++||+-.-|.-++-.++|.+- .||++.+ ++.++|.+ .|||.
T Consensus 6 EL~~iv~~Lg~~~~FLGtFDkrFPGFl~~~k~~~AIVNT~~retGG~HWlA~-Aw~P~---------------------- 62 (203)
T d1nlna_ 6 ELKAIVKDLGCGPYFLGTYDKRFPGFVSPHKLACAIVNTAGRETGGVHWMAF-AWNPR---------------------- 62 (203)
T ss_dssp HHHHHHHHTTCGGGEEEEECTTCCCCCCTTSCEEEEEESSCTTTCCCCEEEE-EEETT----------------------
T ss_pred HHHHHHHHcCCCCcccccccCCCCCccCCCccceeEEecCCcccCceeeEEe-EecCC----------------------
Confidence 467778999999999988888999875 5677654 23556776 67772
Q ss_pred CcccceeeeCCCCCccc
Q 044314 182 DIRFSFLVNFPPGFKIG 198 (417)
Q Consensus 182 ~~~~~F~~~fP~Gf~l~ 198 (417)
...|-|.=|=||.=+
T Consensus 63 --s~t~Y~FDPfGfsd~ 77 (203)
T d1nlna_ 63 --SKTCYLFEPFGFSDQ 77 (203)
T ss_dssp --TTEEEEECTTCCCHH
T ss_pred --cCeEEEECCCCCCHH
Confidence 346778888898733
No 9
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=7.47 E-value=1.2e+02 Score=19.38 Aligned_cols=40 Identities=10% Similarity=0.177 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCCCccchhhHHhhcccCCCCcchhhhHhhh
Q 044314 8 RKVLKFQTLFLSQHNQTLPVSRLDFLARRVGFKRQEAGSFLLK 50 (417)
Q Consensus 8 k~vl~Lk~lI~s~P~~~lpl~~l~k~~~~Lgl~~~~~~~FLrk 50 (417)
..+-++.+.|..++..-+++. .+.+.+|+++..+.+..++
T Consensus 3 ~~i~~v~~yI~~~~~~~~tl~---~lA~~~~~s~~~l~r~Fk~ 42 (54)
T d1bl0a1 3 ITIHSILDWIEDNLESPLSLE---KVSERSGYSKWHLQRMFKK 42 (54)
T ss_dssp HHHHHHHHHHHTTTTSCCCCH---HHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCHH---HHHHHHCcCHHHHHHHHHH
Confidence 356788899999999988887 5557889875445544443
No 10
>d1icha_ a.77.1.2 (A:) Tumor necrosis factor receptor-1 death domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.26 E-value=63 Score=23.10 Aligned_cols=31 Identities=13% Similarity=0.098 Sum_probs=25.2
Q ss_pred eeHHHHHHHHHhcCCCccchhhhhhcCCCce
Q 044314 108 LRLEHVRIARTEFGLPEDFEYSVVLKNAQFF 138 (417)
Q Consensus 108 LpL~kl~~lr~dLGLP~DF~~slv~kyP~~F 138 (417)
+|-..-..+.+.|||+++..+.+..+||+.+
T Consensus 11 v~~~~Wk~lar~LGls~~~i~~I~~~~~~~~ 41 (87)
T d1icha_ 11 VPPLRWKEFVKRLGLSDHEIDRLELQNGRCL 41 (87)
T ss_dssp SCSTTHHHHHHHHTCCHHHHHHHHHHCCSCH
T ss_pred CChHHHHHHHHHhCcCHHHHHHHHHHCCCCH
Confidence 4445667888999999999999999998743
Done!