BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044315
(437 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L6Y4|EMF2_ARATH Polycomb group protein EMBRYONIC FLOWER 2 OS=Arabidopsis thaliana
GN=EMF2 PE=1 SV=2
Length = 631
Score = 512 bits (1319), Expect = e-144, Method: Compositional matrix adjust.
Identities = 259/387 (66%), Positives = 309/387 (79%)
Query: 31 SRSTDQMCREDARVHLSAEEEIAAEESLSIYCKPVELYNILQRRAIRNPSFLQRCLSYQI 90
SRST+QMC ED+R+ +S EEEIAAEESL+ YCKPVELYNI+QRRAIRNP FLQRCL Y+I
Sbjct: 15 SRSTEQMCHEDSRLRISEEEEIAAEESLAAYCKPVELYNIIQRRAIRNPLFLQRCLHYKI 74
Query: 91 HEKHNRRIQMTISLSETVNEGLQARFPFPLYILLGRLVSGTTVSEYSAVYRFSRACILTN 150
KH RRIQMT+ LS ++ G+Q + FPLYILL RLVS V+EYSAVYRFSRACILT
Sbjct: 75 EAKHKRRIQMTVFLSGAIDAGVQTQKLFPLYILLARLVSPKPVAEYSAVYRFSRACILTG 134
Query: 151 FTGVEGSTQVQANFVLPEISRLQLKAKSCTLAILLVNFAGSPNSSSGTDLTKARLANDGG 210
GV+G +Q QANF+LP+++RL L+AKS +LAIL ++FAG+ NS G D K N GG
Sbjct: 135 GLGVDGVSQAQANFLLPDMNRLALEAKSGSLAILFISFAGAQNSQFGIDSGKIHSGNIGG 194
Query: 211 YCHWGKIPLESLYRSWEKSPNLSLGQRAELTYPVDMHSGFLKLSCLDKDKCVSIQMPFNS 270
+C W KIPL+SLY SW+KSPN+ LGQR + V+M F+KL + ++KCVSIQ+P N
Sbjct: 195 HCLWSKIPLQSLYASWQKSPNMDLGQRVDTVSLVEMQPCFIKLKSMSEEKCVSIQVPSNP 254
Query: 271 GSSSTSQQVHVTISAEEIGGRDKSPYNSFTCSDISSPSLSRIIRLRAGNVVFNYRYYNNK 330
+SS+ QQV VTISAEE+G +KSPY+SF+ +DISS SL +IIRLR GNVVFNYRYYNNK
Sbjct: 255 LTSSSPQQVQVTISAEEVGSTEKSPYSSFSYNDISSSSLLQIIRLRTGNVVFNYRYYNNK 314
Query: 331 LQRTEVTEDFSCPFCLAKCASFKGLRYHLSSSHDLFNFEFWVTEEYQAVNVSVKTDIWRS 390
LQ+TEVTEDFSCPFCL KCASFKGLRYHL S+HDL NFEFWVTEE+QAVNVS+KT+ S
Sbjct: 315 LQKTEVTEDFSCPFCLVKCASFKGLRYHLPSTHDLLNFEFWVTEEFQAVNVSLKTETMIS 374
Query: 391 EVVADGVDPKQQTFFFCSKQRRHRRLK 417
+V D VDPKQQTFFF SK+ R RR K
Sbjct: 375 KVNEDDVDPKQQTFFFSSKKFRRRRQK 401
>sp|Q8W5B1|VRN2_ARATH Polycomb group protein VERNALIZATION 2 OS=Arabidopsis thaliana
GN=VRN2 PE=1 SV=2
Length = 440
Score = 108 bits (270), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 67/145 (46%), Positives = 83/145 (57%), Gaps = 15/145 (10%)
Query: 296 YNSFTCSDISSPS-LSRIIRLR-----------AGNVVFNYRYYNNKLQRTEVTEDFSCP 343
YN F + +PS L R + + G VVFNY+ NN LQRTEV ED SCP
Sbjct: 32 YNIFHLRSLGNPSFLPRCLNYKIGAKRKRKSRSTGMVVFNYKDCNNTLQRTEVREDCSCP 91
Query: 344 FCLAKCASFKGLRYHLSSSHDLFNFEFWVTEEYQAVNVSVKTDIWRSEVVADGVDPKQQT 403
FC C SFKGL++HL+SSHDLF FEF + EEYQ VNVSVK + + E D K +
Sbjct: 92 FCSMLCGSFKGLQFHLNSSHDLFEFEFKLLEEYQTVNVSVKLNSFIFEEEGSD-DDKFEP 150
Query: 404 FFFCSK--QRRHRRLKKPTSTVEAC 426
F CSK +RR R + T ++ C
Sbjct: 151 FSLCSKPRKRRQRGGRNNTRRLKVC 175
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 45/65 (69%)
Query: 37 MCREDARVHLSAEEEIAAEESLSIYCKPVELYNILQRRAIRNPSFLQRCLSYQIHEKHNR 96
MCR++ R S EE I+ +E+L IYCKPV LYNI R++ NPSFL RCL+Y+I K R
Sbjct: 1 MCRQNCRAKSSPEEVISTDENLLIYCKPVRLYNIFHLRSLGNPSFLPRCLNYKIGAKRKR 60
Query: 97 RIQMT 101
+ + T
Sbjct: 61 KSRST 65
>sp|Q9ZNT9|FIS2_ARATH Polycomb group protein FERTILIZATION-INDEPENDENT SEED 2
OS=Arabidopsis thaliana GN=FIS2 PE=1 SV=3
Length = 755
Score = 92.0 bits (227), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 67/109 (61%), Gaps = 4/109 (3%)
Query: 320 VVFNYRYYNNKLQ-RTEVTEDFSCPFCLAKCASFKGLRYHLSSSHDLFNFEFWVTEEYQA 378
+ FNYR +NK+ + EV E+FSCPFCL C +GL+ HL SSHD F FEF+ E+
Sbjct: 113 IRFNYRDVSNKMTLKAEVVENFSCPFCLIPCGGHEGLQLHLKSSHDAFKFEFYRAEKDHG 172
Query: 379 --VNVSVKTDIWRSEVVADGV-DPKQQTFFFCSKQRRHRRLKKPTSTVE 424
V+VSVK+D + V+ D V +P+ FCSK R RR + ++ V+
Sbjct: 173 PEVDVSVKSDTIKFGVLKDDVGNPQLSPLTFCSKNRNQRRQRDDSNNVK 221
Score = 35.4 bits (80), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 56 ESLSIYCKPVELYNILQRRAIRNPSFLQRCLSYQI 90
E++ Y KPV +Y L+ R+ NP FL+R L Y I
Sbjct: 65 ENIIKYIKPVAVYKKLETRSKNNPYFLRRSLKYII 99
>sp|Q9NJG9|SUZ12_DROME Polycomb protein Su(z)12 OS=Drosophila melanogaster GN=Su(z)12 PE=1
SV=1
Length = 900
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 320 VVFNYRYYNNKLQRTEVTEDFSCPFCLAKCASFKGLRYHLSSSHDLFNFEFWVTEEYQAV 379
+V+N+ Y NN Q+TE T++ +CP+C C L HL H FNF + +
Sbjct: 391 IVYNFMYSNNTRQQTEYTQELNCPWCGLDCLRLYALLKHLKLCHARFNFTYQPAGSGARI 450
Query: 380 NVSV 383
+V++
Sbjct: 451 DVTI 454
Score = 32.3 bits (72), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 58 LSIYCKPVELYNILQRRAIRNPSFLQRCLSYQIHEKHNRRIQMTISLSETVNEGLQA 114
L + KP ++Y L+ R NP FL R LSY + E+ +R + IS VN L++
Sbjct: 59 LQAFEKPTQIYRYLRNRHETNPIFLNRTLSY-MKERMSRNNKKRISFQ--VNSMLES 112
>sp|Q6DC03|SZ12A_DANRE Polycomb protein suz12-A OS=Danio rerio GN=suz12a PE=2 SV=1
Length = 657
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 319 NVVFNYRYYNNKLQRTEVTEDFSCPFCLAKCASFKGLRYHLSSSHDLFNFEFWVTEEYQA 378
+V + + Y NN Q+TE +D CP+C C L HL SH F F + +
Sbjct: 392 HVYYQFLYNNNTRQQTEARDDLHCPWCTLNCRKLYSLLKHLKLSHSRFIFNYVPHPKGAR 451
Query: 379 VNVSV 383
++VS+
Sbjct: 452 IDVSI 456
Score = 32.7 bits (73), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 50 EEIAAEESLSI--YCKPVELYNILQRRAIRNPSFLQRCLSYQIH 91
E+I A+ L + + KP ++Y L+ R + P FL R L+Y H
Sbjct: 43 EQIQADHQLFLEAFEKPTQIYRFLRTRNLITPIFLHRSLTYMSH 86
>sp|B0R1D5|SZ12B_DANRE Polycomb protein suz12-B OS=Danio rerio GN=suz12b PE=2 SV=1
Length = 682
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 320 VVFNYRYYNNKLQRTEVTEDFSCPFCLAKCASFKGLRYHLSSSHDLFNFEFWVTEEYQAV 379
+ + + Y NN Q+TE +D CP+C C L HL SH F F + + +
Sbjct: 388 IFYQFLYNNNTRQQTEARDDLHCPWCTLNCRKLYSLLKHLKLSHSRFIFNYVPHPKGARI 447
Query: 380 NVSV 383
+VS+
Sbjct: 448 DVSI 451
>sp|Q0VA03|SUZ12_XENTR Polycomb protein suz12 OS=Xenopus tropicalis GN=suz12 PE=2 SV=1
Length = 700
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 320 VVFNYRYYNNKLQRTEVTEDFSCPFCLAKCASFKGLRYHLSSSHDLFNFEFWVTEEYQAV 379
+ + + Y NN Q+TE +D CP+C C L HL H F F + + +
Sbjct: 385 IFYQFLYNNNTRQQTEARDDLHCPWCTLNCRKLYSLLKHLKLCHSRFIFNYVYHPKGARI 444
Query: 380 NVSV 383
+VS+
Sbjct: 445 DVSI 448
>sp|Q80U70|SUZ12_MOUSE Polycomb protein Suz12 OS=Mus musculus GN=Suz12 PE=1 SV=2
Length = 741
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 320 VVFNYRYYNNKLQRTEVTEDFSCPFCLAKCASFKGLRYHLSSSHDLFNFEFWVTEEYQAV 379
+ + + Y NN Q+TE +D CP+C C L HL H F F + + +
Sbjct: 430 IFYQFLYNNNTRQQTEARDDLHCPWCTLNCRKLYSLLKHLKLCHSRFIFNYVYHPKGARI 489
Query: 380 NVSV 383
+VS+
Sbjct: 490 DVSI 493
Score = 32.3 bits (72), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 45 HLSAEEEIAAEESLSIYCKPVELYNILQRRAIRNPSFLQRCLSYQIH 91
H+ A+ E+ L + KP ++Y L+ R + P FL R L+Y H
Sbjct: 80 HVQADHELF----LQAFEKPTQIYRFLRTRNLIAPIFLHRTLTYMSH 122
>sp|Q15022|SUZ12_HUMAN Polycomb protein SUZ12 OS=Homo sapiens GN=SUZ12 PE=1 SV=3
Length = 739
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 320 VVFNYRYYNNKLQRTEVTEDFSCPFCLAKCASFKGLRYHLSSSHDLFNFEFWVTEEYQAV 379
+ + + Y NN Q+TE +D CP+C C L HL H F F + + +
Sbjct: 428 IFYQFLYNNNTRQQTEARDDLHCPWCTLNCRKLYSLLKHLKLCHSRFIFNYVYHPKGARI 487
Query: 380 NVSV 383
+VS+
Sbjct: 488 DVSI 491
Score = 32.3 bits (72), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 45 HLSAEEEIAAEESLSIYCKPVELYNILQRRAIRNPSFLQRCLSYQIH 91
H+ A+ E+ L + KP ++Y L+ R + P FL R L+Y H
Sbjct: 78 HVQADHELF----LQAFEKPTQIYRFLRTRNLIAPIFLHRTLTYMSH 120
>sp|Q3V4V8|Y189_ATV Putative zinc finger protein ORF189 OS=Acidianus two-tailed virus
PE=4 SV=1
Length = 189
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 333 RTEVTEDFSCPFCLAKCASFKGLRYHLSSSHDLFNFEFWVTEEYQAVNVSVKTDIWRSEV 392
+TE + CP+C+++ + + L+ HL H+ F W Y+ + T+ +R
Sbjct: 107 QTEKKYGYVCPYCVSRFPTVRALKIHLKRRHNGFP---WCPVCYKPLKNKNATNHFRR-- 161
Query: 393 VADGVDPKQQTFFFCSKQR 411
DP+ Q ++ S++R
Sbjct: 162 ---FTDPQHQFWYMISRKR 177
>sp|P56131|MIAB_HELPY (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Helicobacter pylori (strain ATCC 700392 / 26695)
GN=miaB PE=3 SV=1
Length = 437
Score = 33.1 bits (74), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 242 YPVDMHSGFLKLSCLDKDKCVSIQMPFNSGSSSTSQQVHVTISAE 286
+P+ M+ GFL+ + C SI MP SGSS+ + + S E
Sbjct: 232 HPLHMNDGFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKE 276
>sp|B5ZA35|MIAB_HELPG (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Helicobacter pylori (strain G27) GN=miaB PE=3 SV=1
Length = 437
Score = 33.1 bits (74), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 242 YPVDMHSGFLKLSCLDKDKCVSIQMPFNSGSSSTSQQVHVTISAE 286
+P+ M+ GFL+ + C SI MP SGSS+ + + S E
Sbjct: 232 HPLHMNDGFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKE 276
>sp|Q1CUN4|MIAB_HELPH (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Helicobacter pylori (strain HPAG1) GN=miaB PE=3 SV=1
Length = 437
Score = 32.7 bits (73), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 242 YPVDMHSGFLKLSCLDKDKCVSIQMPFNSGSSSTSQQVHVTISAE 286
+P+ M+ GFL+ + C SI MP SGSS+ + + S E
Sbjct: 232 HPLHMNDGFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKE 276
>sp|B6JKJ8|MIAB_HELP2 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Helicobacter pylori (strain P12) GN=miaB PE=3 SV=1
Length = 437
Score = 32.7 bits (73), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 242 YPVDMHSGFLKLSCLDKDKCVSIQMPFNSGSSSTSQQVHVTISAE 286
+P+ M+ GFL+ + C SI MP SGSS+ + + S E
Sbjct: 232 HPLHMNDGFLERFAKNPKVCKSIHMPLQSGSSAVLKMMRRGYSKE 276
>sp|Q61SK8|MEP1_CAEBR MOG interacting and ectopic P-granules protein 1 OS=Caenorhabditis
briggsae GN=mep-1 PE=3 SV=2
Length = 880
Score = 32.7 bits (73), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 340 FSCPFCLAKCASFKGLRYHLSSSH 363
+SC C KC+S++ L HLSS+H
Sbjct: 841 YSCDVCAFKCSSYQTLEAHLSSTH 864
>sp|Q0I1U8|COAA_HAES1 Pantothenate kinase OS=Haemophilus somnus (strain 129Pt) GN=coaA
PE=3 SV=1
Length = 317
Score = 32.3 bits (72), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 36 QMCREDARVHLSAEEEIAAEESLSIYCKPVELYNILQRRAIRNPSFLQRCLSYQIHEKHN 95
++ +D + L EE++ EE +IY L N +R + L+R LS HN
Sbjct: 34 KLTEQDLKPLLGFNEELSLEEVSTIYLPLARLINYYIEENLRRQTVLKRFLS-----GHN 88
Query: 96 RRIQMTISLSETVNEG 111
++ IS++ +V+ G
Sbjct: 89 PKVPYIISIAGSVSVG 104
>sp|B0UV22|COAA_HAES2 Pantothenate kinase OS=Haemophilus somnus (strain 2336) GN=coaA
PE=3 SV=1
Length = 317
Score = 32.3 bits (72), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 36 QMCREDARVHLSAEEEIAAEESLSIYCKPVELYNILQRRAIRNPSFLQRCLSYQIHEKHN 95
++ +D + L EE++ EE +IY L N +R + L+R LS HN
Sbjct: 34 KLTEQDLKPLLGFNEELSLEEVSTIYLPLARLINYYIEENLRRQTVLKRFLS-----GHN 88
Query: 96 RRIQMTISLSETVNEG 111
++ IS++ +V+ G
Sbjct: 89 PKVPYIISIAGSVSVG 104
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.132 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,360,543
Number of Sequences: 539616
Number of extensions: 5983128
Number of successful extensions: 12533
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 12506
Number of HSP's gapped (non-prelim): 33
length of query: 437
length of database: 191,569,459
effective HSP length: 120
effective length of query: 317
effective length of database: 126,815,539
effective search space: 40200525863
effective search space used: 40200525863
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)