BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044317
(123 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q05024|TRI1_YEAST Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=TRI1 PE=1 SV=1
Length = 226
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 33/50 (66%)
Query: 52 LGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKKDLLGEEKLKSLLSGK 101
L +FL E PR++ K+I ++IK ++ +NP ++++L +EK++ + K
Sbjct: 130 LQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFGKK 179
>sp|Q08747|UAF30_YEAST Upstream activation factor subunit UAF30 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1
SV=1
Length = 228
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 27 SSSKAQAKAKAKGKTKSVAPSSTSE------LGRFLNIPEPPRSETAKLITKFIKLNNRE 80
S +K K KG T S +P ST + L L E R+E + + +IK +N +
Sbjct: 100 SETKGTHVEKKKG-TVSKSPISTRKVTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQ 158
Query: 81 NPGMKKDLLGEEKLKSLLSGKDRIGIPEIAKLLSGQF 117
NP KK++L +EKL+ L+ GK + E+ K+L+
Sbjct: 159 NPNNKKEILCDEKLE-LILGKS-TNMFEMHKILASHM 193
>sp|Q3UDK1|TRAD1_MOUSE TRAF-type zinc finger domain-containing protein 1 OS=Mus musculus
GN=Trafd1 PE=1 SV=1
Length = 580
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 38 KGKTKSVAPSST----SELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKKDLLGEE 92
KG T S++P+ T + R LN+P PRS+ + +KLNN ++ ++ + G +
Sbjct: 443 KGPTYSMSPNRTMNNVASCNRLLNLPSGPRSDCQRSPPGVLKLNNSDSQDIRGQMRGSQ 501
>sp|Q49VW3|Y1952_STAS1 UPF0042 nucleotide-binding protein SSP1952 OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=SSP1952 PE=3 SV=1
Length = 308
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 39 GKTKSVAPSSTSELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKK-----DLLGEEK 93
G KSV S ++G F PP L+ KF++L + NP ++K DL G+E
Sbjct: 21 GAGKSVVIQSLEDIGYFCVDNLPP-----ILLPKFVELMGQGNPSLQKVAIAIDLRGKEL 75
Query: 94 LKSLLSGKDRI 104
KSL+ D I
Sbjct: 76 FKSLIHEMDLI 86
>sp|O74503|UAF30_SCHPO Upstream activation factor subunit spp27 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1
Length = 233
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (62%)
Query: 52 LGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKKDLLGEEKLKSLLS 99
L FL + + R +T K + ++IK ++ ++P K+ +L ++KLKS+
Sbjct: 127 LAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFE 174
>sp|Q4L4J2|Y2124_STAHJ UPF0042 nucleotide-binding protein SH2124 OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=SH2124 PE=3 SV=1
Length = 304
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 42 KSVAPSSTSELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKK-----DLLGEEKLKS 96
KSV ++G F PP L+ KF++L + NP ++K DL G+E KS
Sbjct: 25 KSVVIQCLEDIGYFCVDNLPP-----ILLPKFVELMEQGNPSLQKVAIAIDLRGKELFKS 79
Query: 97 LLSGKDRI 104
L+ D I
Sbjct: 80 LVEEIDAI 87
>sp|B9DJK9|Y414_STACT UPF0042 nucleotide-binding protein Sca_0414 OS=Staphylococcus
carnosus (strain TM300) GN=Sca_0414 PE=3 SV=2
Length = 307
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 39 GKTKSVAPSSTSELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKK-----DLLGEEK 93
G KS+ + +LG F PP L+ KF++L + NP ++K DL G+E
Sbjct: 22 GAGKSLVLQNLEDLGYFCVDNLPP-----ILLPKFVELMEQGNPSLRKVAIAIDLRGQEF 76
Query: 94 LKSLLSGKD 102
KSL+ D
Sbjct: 77 FKSLVKEVD 85
>sp|Q2YSG2|Y719_STAAB UPF0042 nucleotide-binding protein SAB0719 OS=Staphylococcus aureus
(strain bovine RF122 / ET3-1) GN=SAB0719 PE=3 SV=1
Length = 303
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Query: 42 KSVAPSSTSELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKK-----DLLGEEKLKS 96
KS+ ++G F PP L+ KF++L + NP ++K DL G+E S
Sbjct: 24 KSLVIQCLEDMGYFCVDNLPP-----VLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNS 78
Query: 97 LLSGKDRIGIPEIAKLLSGQFVKTGS 122
L++ D++ EI ++ F++ +
Sbjct: 79 LVAVVDKVK-SEIDVIIDVMFLEAST 103
>sp|P41882|YPT4_CAEEL Ankyrin repeat-containing protein F37A4.4 OS=Caenorhabditis elegans
GN=F37A4.4 PE=4 SV=2
Length = 1163
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 62 PRSETAKLITKFIKLNNRENPGMKKDLLGEEKLKSLLSGKDRIGIPEIAKLLSGQFVKTG 121
P KL++ KL K DLL K+ G +GIPE+ + QF K G
Sbjct: 646 PGPSIEKLVSDLEKLEQSSKSYRKADLLTIRKV--FEDGSKIVGIPEVFSYIDSQFEKKG 703
Query: 122 S 122
S
Sbjct: 704 S 704
>sp|Q13107|UBP4_HUMAN Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens GN=USP4
PE=1 SV=3
Length = 963
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 55 FLNIPEPPRSETAKLITKFIKLN-----NRENP-GMKKDLLGE--EKLKSLLSGKDRIGI 106
F+N S TA L F+K NR+NP GMK ++ E +K + SG+D
Sbjct: 312 FMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVA 371
Query: 107 PEIAKLLSGQFVKTGSG 123
P + K G+F SG
Sbjct: 372 PRMFKTQVGRFAPQFSG 388
>sp|Q5RCD3|UBP4_PONAB Ubiquitin carboxyl-terminal hydrolase 4 OS=Pongo abelii GN=USP4
PE=2 SV=1
Length = 963
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 55 FLNIPEPPRSETAKLITKFIKLN-----NRENP-GMKKDLLGE--EKLKSLLSGKDRIGI 106
F+N S TA L F+K NR+NP GMK ++ E +K + SG+D
Sbjct: 312 FMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVA 371
Query: 107 PEIAKLLSGQFVKTGSG 123
P + K G+F SG
Sbjct: 372 PRMFKTQVGRFAPQFSG 388
>sp|A6QR55|UBP4_BOVIN Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos taurus GN=USP4 PE=2
SV=1
Length = 963
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 55 FLNIPEPPRSETAKLITKFIKLN-----NRENP-GMKKDLLGE--EKLKSLLSGKDRIGI 106
F+N S TA L F+K NR+NP GMK ++ E +K + SG+D
Sbjct: 312 FMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVA 371
Query: 107 PEIAKLLSGQFVKTGSG 123
P + K G+F SG
Sbjct: 372 PRMFKTQVGRFAPQFSG 388
>sp|P35123|UBP4_MOUSE Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus musculus GN=Usp4
PE=1 SV=3
Length = 962
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 55 FLNIPEPPRSETAKLITKFIKLN-----NRENP-GMKKDLLGE--EKLKSLLSGKDRIGI 106
F+N S TA L F+K NR+NP GMK ++ E +K + SG+D
Sbjct: 312 FMNSALQCLSNTAPLTEYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDTHVA 371
Query: 107 PEIAKLLSGQFVKTGSG 123
P + K G+F SG
Sbjct: 372 PRMFKTQVGRFAPQFSG 388
>sp|Q38827|IAA9_ARATH Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1
SV=1
Length = 338
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 68 KLITKFIKLNNRENPGMKKDLLGEEKLKSLLSGKDRI 104
K+ T F N KD+L E KLK LL+GKD +
Sbjct: 249 KMFTTFTLGQCGSNGAAGKDMLSETKLKDLLNGKDYV 285
>sp|Q6GIM6|Y820_STAAR UPF0042 nucleotide-binding protein SAR0820 OS=Staphylococcus aureus
(strain MRSA252) GN=SAR0820 PE=3 SV=1
Length = 303
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 42 KSVAPSSTSELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKK-----DLLGEEKLKS 96
KS+ ++G F PP L+ KF++L + NP ++K DL G+E S
Sbjct: 24 KSLVIQCLEDMGYFCVDNLPP-----VLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNS 78
Query: 97 LLSGKDRI 104
L++ D++
Sbjct: 79 LVAVVDKV 86
>sp|Q5HHQ3|Y830_STAAC UPF0042 nucleotide-binding protein SACOL0830 OS=Staphylococcus
aureus (strain COL) GN=SACOL0830 PE=3 SV=1
Length = 303
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 42 KSVAPSSTSELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKK-----DLLGEEKLKS 96
KS+ ++G F PP L+ KF++L + NP ++K DL G+E S
Sbjct: 24 KSLVIQCLEDMGYFCVDNLPP-----VLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNS 78
Query: 97 LLSGKDRI 104
L++ D++
Sbjct: 79 LVAVVDKV 86
>sp|A6TZP4|Y806_STAA2 UPF0042 nucleotide-binding protein SaurJH1_0806 OS=Staphylococcus
aureus (strain JH1) GN=SaurJH1_0806 PE=3 SV=1
Length = 303
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 42 KSVAPSSTSELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKK-----DLLGEEKLKS 96
KS+ ++G F PP L+ KF++L + NP ++K DL G+E S
Sbjct: 24 KSLVIQCLEDMGYFCVDNLPP-----VLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNS 78
Query: 97 LLSGKDRI 104
L++ D++
Sbjct: 79 LVAVVDKV 86
>sp|A8Z042|Y794_STAAT UPF0042 nucleotide-binding protein USA300HOU_0794 OS=Staphylococcus
aureus (strain USA300 / TCH1516) GN=USA300HOU_0794 PE=3
SV=1
Length = 303
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 42 KSVAPSSTSELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKK-----DLLGEEKLKS 96
KS+ ++G F PP L+ KF++L + NP ++K DL G+E S
Sbjct: 24 KSLVIQCLEDMGYFCVDNLPP-----VLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNS 78
Query: 97 LLSGKDRI 104
L++ D++
Sbjct: 79 LVAVVDKV 86
>sp|A5IQW9|Y790_STAA9 UPF0042 nucleotide-binding protein SaurJH9_0790 OS=Staphylococcus
aureus (strain JH9) GN=SaurJH9_0790 PE=3 SV=1
Length = 303
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 42 KSVAPSSTSELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKK-----DLLGEEKLKS 96
KS+ ++G F PP L+ KF++L + NP ++K DL G+E S
Sbjct: 24 KSLVIQCLEDMGYFCVDNLPP-----VLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNS 78
Query: 97 LLSGKDRI 104
L++ D++
Sbjct: 79 LVAVVDKV 86
>sp|Q2G039|Y787_STAA8 UPF0042 nucleotide-binding protein SAOUHSC_00787 OS=Staphylococcus
aureus (strain NCTC 8325) GN=SAOUHSC_00787 PE=3 SV=2
Length = 303
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 42 KSVAPSSTSELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKK-----DLLGEEKLKS 96
KS+ ++G F PP L+ KF++L + NP ++K DL G+E S
Sbjct: 24 KSLVIQCLEDMGYFCVDNLPP-----VLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNS 78
Query: 97 LLSGKDRI 104
L++ D++
Sbjct: 79 LVAVVDKV 86
>sp|P67108|Y765_STAAM UPF0042 nucleotide-binding protein SAV0765 OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=SAV0765 PE=1 SV=1
Length = 303
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 42 KSVAPSSTSELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKK-----DLLGEEKLKS 96
KS+ ++G F PP L+ KF++L + NP ++K DL G+E S
Sbjct: 24 KSLVIQCLEDMGYFCVDNLPP-----VLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNS 78
Query: 97 LLSGKDRI 104
L++ D++
Sbjct: 79 LVAVVDKV 86
>sp|A7WZR5|Y762_STAA1 UPF0042 nucleotide-binding protein SAHV_0762 OS=Staphylococcus
aureus (strain Mu3 / ATCC 700698) GN=SAHV_0762 PE=3 SV=1
Length = 303
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 42 KSVAPSSTSELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKK-----DLLGEEKLKS 96
KS+ ++G F PP L+ KF++L + NP ++K DL G+E S
Sbjct: 24 KSLVIQCLEDMGYFCVDNLPP-----VLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNS 78
Query: 97 LLSGKDRI 104
L++ D++
Sbjct: 79 LVAVVDKV 86
>sp|Q2FIM8|Y748_STAA3 UPF0042 nucleotide-binding protein SAUSA300_0748 OS=Staphylococcus
aureus (strain USA300) GN=SAUSA300_0748 PE=3 SV=1
Length = 303
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 42 KSVAPSSTSELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKK-----DLLGEEKLKS 96
KS+ ++G F PP L+ KF++L + NP ++K DL G+E S
Sbjct: 24 KSLVIQCLEDMGYFCVDNLPP-----VLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNS 78
Query: 97 LLSGKDRI 104
L++ D++
Sbjct: 79 LVAVVDKV 86
>sp|A6QF73|Y733_STAAE UPF0042 nucleotide-binding protein NWMN_0733 OS=Staphylococcus
aureus (strain Newman) GN=NWMN_0733 PE=3 SV=1
Length = 303
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 42 KSVAPSSTSELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKK-----DLLGEEKLKS 96
KS+ ++G F PP L+ KF++L + NP ++K DL G+E S
Sbjct: 24 KSLVIQCLEDMGYFCVDNLPP-----VLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNS 78
Query: 97 LLSGKDRI 104
L++ D++
Sbjct: 79 LVAVVDKV 86
>sp|Q6GB65|Y730_STAAS UPF0042 nucleotide-binding protein SAS0730 OS=Staphylococcus aureus
(strain MSSA476) GN=SAS0730 PE=3 SV=1
Length = 303
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 42 KSVAPSSTSELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKK-----DLLGEEKLKS 96
KS+ ++G F PP L+ KF++L + NP ++K DL G+E S
Sbjct: 24 KSLVIQCLEDMGYFCVDNLPP-----VLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNS 78
Query: 97 LLSGKDRI 104
L++ D++
Sbjct: 79 LVAVVDKV 86
>sp|P67110|Y727_STAAW UPF0042 nucleotide-binding protein MW0727 OS=Staphylococcus aureus
(strain MW2) GN=MW0727 PE=3 SV=1
Length = 303
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 42 KSVAPSSTSELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKK-----DLLGEEKLKS 96
KS+ ++G F PP L+ KF++L + NP ++K DL G+E S
Sbjct: 24 KSLVIQCLEDMGYFCVDNLPP-----VLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNS 78
Query: 97 LLSGKDRI 104
L++ D++
Sbjct: 79 LVAVVDKV 86
>sp|P67109|Y720_STAAN UPF0042 nucleotide-binding protein SA0720 OS=Staphylococcus aureus
(strain N315) GN=SA0720 PE=1 SV=1
Length = 303
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 42 KSVAPSSTSELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKK-----DLLGEEKLKS 96
KS+ ++G F PP L+ KF++L + NP ++K DL G+E S
Sbjct: 24 KSLVIQCLEDMGYFCVDNLPP-----VLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNS 78
Query: 97 LLSGKDRI 104
L++ D++
Sbjct: 79 LVAVVDKV 86
>sp|Q975U9|SYH_SULTO Histidine--tRNA ligase OS=Sulfolobus tokodaii (strain DSM 16993 /
JCM 10545 / NBRC 100140 / 7) GN=hisS PE=3 SV=1
Length = 426
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 62 PRSETAKLITKFIKLNNRENPG---MKKDLLGEEKLKSLLSGKDRI 104
P SE +LIT + +NN + +K+DL + LK L+ DRI
Sbjct: 201 PSSEYTELITNILSVNNLDISSYNKIKEDLTEKYNLKDLIQDLDRI 246
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.126 0.333
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,619,830
Number of Sequences: 539616
Number of extensions: 1565680
Number of successful extensions: 5360
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 5300
Number of HSP's gapped (non-prelim): 103
length of query: 123
length of database: 191,569,459
effective HSP length: 90
effective length of query: 33
effective length of database: 143,004,019
effective search space: 4719132627
effective search space used: 4719132627
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)