Query 044317
Match_columns 123
No_of_seqs 105 out of 548
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 23:41:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044317.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044317hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v31_A Hypothetical protein RA 100.0 9.8E-33 3.4E-37 191.8 5.1 79 42-121 8-86 (93)
2 1uhr_A SWI/SNF related, matrix 100.0 1.3E-32 4.3E-37 191.4 2.9 80 41-121 7-86 (93)
3 1v32_A AT5G08430, hypothetical 100.0 2.4E-31 8.1E-36 188.1 8.1 79 42-121 10-94 (101)
4 3dac_M MDM4 protein; MDMX, MDM 97.7 4.1E-05 1.4E-09 55.9 4.2 71 49-120 28-107 (130)
5 3fea_A MDM4 protein; HDMX, HDM 97.4 0.0001 3.5E-09 51.7 3.8 72 49-121 19-99 (100)
6 1ycq_A MDM2, MDM2; anti-oncoge 97.4 0.00025 8.4E-09 50.3 5.3 68 49-117 15-91 (107)
7 1z1m_A Ubiquitin-protein ligas 97.4 0.00025 8.7E-09 51.1 5.4 68 49-117 31-104 (119)
8 2z5s_M MDM4 protein, zebrafish 97.4 0.00019 6.3E-09 52.9 4.4 69 49-118 27-104 (140)
9 2axi_A Ubiquitin-protein ligas 97.1 0.00023 7.7E-09 51.0 2.4 66 49-115 15-86 (115)
10 2kwl_A ACP, acyl carrier prote 86.1 0.81 2.8E-05 28.6 3.6 58 57-118 1-58 (84)
11 1f80_D Acyl carrier protein; t 77.1 2 6.7E-05 26.4 2.9 55 60-118 2-56 (81)
12 2lol_A ACP, acyl carrier prote 74.1 4.9 0.00017 24.5 4.2 54 61-118 2-55 (81)
13 2cnr_A FAS, ACP, acyl carrier 72.8 5.6 0.00019 24.2 4.2 55 60-118 2-56 (82)
14 2dnw_A Acyl carrier protein; A 72.1 4 0.00014 26.5 3.5 59 55-117 5-63 (99)
15 3e6c_C CPRK, cyclic nucleotide 67.3 4.6 0.00016 29.3 3.4 64 49-116 180-250 (250)
16 3fx3_A Cyclic nucleotide-bindi 63.5 8.9 0.00031 27.2 4.2 44 50-98 182-226 (237)
17 1dv5_A APO-DCP, APO-D-alanyl c 63.2 4.4 0.00015 25.3 2.3 53 62-118 1-53 (80)
18 1x3o_A Acyl carrier protein; s 62.0 4.2 0.00014 24.6 2.0 54 61-118 1-54 (80)
19 1vku_A Acyl carrier protein; T 58.8 9.9 0.00034 25.2 3.5 55 59-118 11-65 (100)
20 2ava_A ACP I, acyl carrier pro 57.6 13 0.00046 22.6 3.8 53 62-118 1-53 (82)
21 1af8_A Actinorhodin polyketide 55.8 11 0.00039 23.2 3.2 55 62-118 2-57 (86)
22 1klp_A ACP, ACPM, meromycolate 54.9 11 0.00037 25.1 3.2 55 60-118 2-56 (115)
23 2fmy_A COOA, carbon monoxide o 52.7 4.7 0.00016 28.5 1.1 45 50-98 171-217 (220)
24 2jq4_A AGR_C_4658P, hypothetic 52.5 8.6 0.00029 25.5 2.4 56 60-118 17-72 (105)
25 2l4b_A Acyl carrier protein; i 52.1 1.9 6.4E-05 27.3 -1.0 57 60-118 3-60 (88)
26 2cgq_A Acyl carrier protein AC 51.8 7.1 0.00024 26.7 1.9 52 57-118 23-74 (113)
27 2zcw_A TTHA1359, transcription 50.4 5.7 0.00019 27.7 1.2 45 50-98 150-195 (202)
28 2bgc_A PRFA; bacterial infecti 45.7 8.1 0.00028 27.8 1.5 48 47-98 169-219 (238)
29 3e97_A Transcriptional regulat 45.3 15 0.00052 25.9 2.9 46 49-98 178-224 (231)
30 2gau_A Transcriptional regulat 44.5 6.3 0.00022 28.0 0.7 45 50-98 184-229 (232)
31 1ft9_A Carbon monoxide oxidati 44.1 11 0.00038 26.5 2.0 45 50-98 167-213 (222)
32 4ev0_A Transcription regulator 42.9 18 0.00063 25.0 2.9 46 49-98 166-212 (216)
33 3b02_A Transcriptional regulat 42.2 7.8 0.00027 26.9 0.9 45 50-98 143-188 (195)
34 2ld7_A Histone deacetylase com 41.8 41 0.0014 22.7 4.4 33 68-119 30-62 (94)
35 3dkw_A DNR protein; CRP-FNR, H 41.7 7.1 0.00024 27.4 0.6 45 49-97 181-226 (227)
36 3dv8_A Transcriptional regulat 41.6 20 0.00069 24.9 3.0 46 49-98 172-218 (220)
37 3gzm_A Acyl carrier protein; h 40.8 21 0.00072 21.8 2.7 53 62-118 2-54 (81)
38 1j9i_A GPNU1 DBD;, terminase s 40.1 27 0.00092 21.0 3.1 47 50-118 6-55 (68)
39 2k6m_S Supervillin; SVHP, HP, 39.5 5.3 0.00018 25.6 -0.3 35 80-115 24-58 (67)
40 3ejb_A Acyl carrier protein; p 39.4 18 0.00062 23.4 2.3 56 59-118 16-71 (97)
41 3ce7_A Specific mitochodrial a 38.5 25 0.00087 23.3 3.0 53 61-118 15-72 (107)
42 3d0s_A Transcriptional regulat 37.6 24 0.00083 24.7 2.9 46 48-97 178-225 (227)
43 2qnw_A Acyl carrier protein; m 37.4 23 0.00078 21.6 2.5 54 61-118 3-56 (82)
44 2cpg_A REPA protein, transcrip 37.2 39 0.0013 18.4 3.2 32 46-77 7-43 (45)
45 1yu8_X Villin; alpha helix, 3- 36.3 7.7 0.00026 24.9 0.1 35 80-115 24-58 (67)
46 1qzp_A Dematin; villin headpie 36.2 6.4 0.00022 25.2 -0.4 35 80-115 25-59 (68)
47 3la7_A Global nitrogen regulat 35.6 11 0.00037 27.3 0.8 45 50-98 197-242 (243)
48 1ujs_A Actin-binding LIM prote 33.6 8.1 0.00028 26.1 -0.2 35 80-115 39-73 (88)
49 2hza_A Nickel-responsive regul 33.6 25 0.00086 24.4 2.4 41 46-86 6-52 (133)
50 1kqn_A Nmnat, nicotinamide mon 31.2 9.7 0.00033 29.7 -0.1 33 49-81 223-255 (279)
51 1nup_A FKSG76; NAD biosynthesi 29.8 13 0.00043 28.3 0.3 35 49-83 202-236 (252)
52 1o5l_A Transcriptional regulat 29.4 11 0.00039 26.5 0.0 40 49-92 167-206 (213)
53 3h05_A Uncharacterized protein 29.3 7.1 0.00024 28.5 -1.1 19 63-81 153-171 (177)
54 1fh1_A NODF, nodulation protei 26.4 36 0.0012 21.5 2.0 51 66-118 5-60 (92)
55 2qtr_A Nicotinate (nicotinamid 26.3 12 0.00042 26.4 -0.3 32 49-80 156-187 (189)
56 1k4m_A NAMN adenylyltransferas 25.8 15 0.00052 26.8 0.1 32 49-80 181-212 (213)
57 1nq4_A Oxytetracycline polyket 24.9 1.3E+02 0.0046 18.9 4.7 54 60-118 3-56 (95)
58 2h29_A Probable nicotinate-nuc 24.1 15 0.00051 26.2 -0.2 32 49-80 156-187 (189)
59 1zyb_A Transcription regulator 24.0 22 0.00077 25.3 0.7 40 49-92 189-228 (232)
60 3fwk_A FMN adenylyltransferase 23.8 26 0.0009 28.2 1.2 11 69-79 204-214 (308)
61 1kam_A Deamido-NAD(+), nicotin 23.7 14 0.00049 26.5 -0.4 33 49-81 161-193 (194)
62 2hin_A GP39, repressor protein 23.5 36 0.0012 21.4 1.6 23 49-78 13-35 (71)
63 4dxe_H ACP, acyl carrier prote 22.8 36 0.0012 22.4 1.5 54 61-118 22-75 (101)
64 2pzm_A Putative nucleotide sug 21.7 1.2E+02 0.004 22.6 4.5 36 52-88 291-327 (330)
65 1yum_A 'probable nicotinate-nu 21.4 20 0.00068 27.2 0.0 33 49-81 199-231 (242)
66 2oq2_A Phosphoadenosine phosph 21.2 37 0.0013 25.6 1.5 13 68-80 193-205 (261)
67 2l3v_A ACP, acyl carrier prote 21.1 41 0.0014 20.0 1.5 49 65-117 4-52 (79)
68 1z4h_A TORI, TOR inhibition pr 21.0 35 0.0012 20.5 1.1 48 50-117 14-61 (66)
69 1yfn_A Stringent starvation pr 20.3 79 0.0027 22.2 3.0 20 60-79 7-26 (118)
70 1ou8_A Stringent starvation pr 20.3 70 0.0024 22.3 2.7 20 60-79 6-25 (111)
No 1
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.97 E-value=9.8e-33 Score=191.84 Aligned_cols=79 Identities=14% Similarity=0.203 Sum_probs=75.8
Q ss_pred cccCCCCCHHHHhhhCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCccccchhHHhhhcCCCccCHHHHHHHHHhccCCCC
Q 044317 42 KSVAPSSTSELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKKDLLGEEKLKSLLSGKDRIGIPEIAKLLSGQFVKTG 121 (123)
Q Consensus 42 kp~~~~LS~eLa~fLG~~e~sR~evvk~lW~YIK~n~LQDp~nKr~I~cDekLk~LF~g~d~i~~~~i~klL~~Hl~k~~ 121 (123)
.|++|.+|++|++|||.+++||++|++.||+|||+||||||+||+.|+||++|++|| |+++|.|++|+++|++||.+.+
T Consensus 8 ~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~L~~lf-g~~~v~~~~~~klL~~Hl~p~~ 86 (93)
T 1v31_A 8 VPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVF-GEEKLKFTMVSQKISHHLSPPP 86 (93)
T ss_dssp SCCCEECCHHHHHHSCCSEECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHS-CSSEEETTTTHHHHHHHCBCCC
T ss_pred CCCccccCHHHHHHHCCCccCHHHHHHHHHHHHHHccCcCcccCceeehhHHHHHHh-CCCcccHHHHHHHHHHhcCCCC
Confidence 677799999999999999999999999999999999999999999999999999999 9999999999999999997653
No 2
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=99.97 E-value=1.3e-32 Score=191.45 Aligned_cols=80 Identities=18% Similarity=0.290 Sum_probs=76.1
Q ss_pred ccccCCCCCHHHHhhhCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCccccchhHHhhhcCCCccCHHHHHHHHHhccCCC
Q 044317 41 TKSVAPSSTSELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKKDLLGEEKLKSLLSGKDRIGIPEIAKLLSGQFVKT 120 (123)
Q Consensus 41 ~kp~~~~LS~eLa~fLG~~e~sR~evvk~lW~YIK~n~LQDp~nKr~I~cDekLk~LF~g~d~i~~~~i~klL~~Hl~k~ 120 (123)
+.|++|++|++|++|+|.+++||++|++.||+|||+||||||+||+.|+||++|++|| |+++|.|++|+++|++||...
T Consensus 7 ~~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~Lk~lf-g~~~v~~~~~~klL~~Hl~p~ 85 (93)
T 1uhr_A 7 GQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIF-ESQRMKFSEIPQRLHALLMPP 85 (93)
T ss_dssp SSCCEEEECTTHHHHTCCSEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHT-CCSSEEGGGSHHHHHHHEECS
T ss_pred cCCCccCcCHHHHHHHCCCccCHHHHHHHHHHHHHhccCCCccccceeechHHHHHHh-CCCcccHHHHHHHHHHhcCCC
Confidence 3577799999999999999999999999999999999999999999999999999999 999999999999999999865
Q ss_pred C
Q 044317 121 G 121 (123)
Q Consensus 121 ~ 121 (123)
+
T Consensus 86 ~ 86 (93)
T 1uhr_A 86 E 86 (93)
T ss_dssp S
T ss_pred C
Confidence 3
No 3
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.97 E-value=2.4e-31 Score=188.09 Aligned_cols=79 Identities=20% Similarity=0.262 Sum_probs=73.9
Q ss_pred cccCCCCCHHHHhhh---CC---CCCCHHHHHHHHHHHhhhcCCCCCCCCCccccchhHHhhhcCCCccCHHHHHHHHHh
Q 044317 42 KSVAPSSTSELGRFL---NI---PEPPRSETAKLITKFIKLNNRENPGMKKDLLGEEKLKSLLSGKDRIGIPEIAKLLSG 115 (123)
Q Consensus 42 kp~~~~LS~eLa~fL---G~---~e~sR~evvk~lW~YIK~n~LQDp~nKr~I~cDekLk~LF~g~d~i~~~~i~klL~~ 115 (123)
.....|+|++|++|| |. +++||++|++.||+|||+||||||+|||.|+||++|++|| |+++|.||+|+++|++
T Consensus 10 ~~~~~w~S~eLa~fl~~iG~~~~~~~sR~eVvk~lW~YIK~nnLQdp~~Kr~I~cD~kLk~lF-g~~~v~~~~m~klL~~ 88 (101)
T 1v32_A 10 FEFVGWGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLF-GTRTIFRMKVYDLLEK 88 (101)
T ss_dssp CSSSSSSCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHT-CCSEEETTHHHHHHHH
T ss_pred ceecccCCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhhcCcCcccCCeeeccHHHHHHH-CCCcccHHHHHHHHHH
Confidence 344578999999999 87 5799999999999999999999999999999999999999 9999999999999999
Q ss_pred ccCCCC
Q 044317 116 QFVKTG 121 (123)
Q Consensus 116 Hl~k~~ 121 (123)
||.+..
T Consensus 89 Hl~~~~ 94 (101)
T 1v32_A 89 HYKENQ 94 (101)
T ss_dssp HSCSCC
T ss_pred HcCccc
Confidence 999853
No 4
>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}
Probab=97.65 E-value=4.1e-05 Score=55.88 Aligned_cols=71 Identities=13% Similarity=0.158 Sum_probs=63.4
Q ss_pred CHHHHhhh---CC--CCCCHHHHHHHHHHHhhhcCCCCCCCCCccccc-hhHHhhhcCCCccCHHH---HHHHHHhccCC
Q 044317 49 TSELGRFL---NI--PEPPRSETAKLITKFIKLNNRENPGMKKDLLGE-EKLKSLLSGKDRIGIPE---IAKLLSGQFVK 119 (123)
Q Consensus 49 S~eLa~fL---G~--~e~sR~evvk~lW~YIK~n~LQDp~nKr~I~cD-ekLk~LF~g~d~i~~~~---i~klL~~Hl~k 119 (123)
-++|-.+| |. ...|..+|+..+-+||-.+.|.||.+..+|.|. +.|..+| |+++|++.+ +.+.|.++|+.
T Consensus 28 k~~lL~iLq~aGA~~dvfT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~ll-Gv~sFSVkdp~~L~~mL~~NLv~ 106 (130)
T 3dac_M 28 RAPLLQILKVAGAQEEVFTVKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELL-EVGSFSVKNPSPLYEMLKRNLVI 106 (130)
T ss_dssp CHHHHHHHHHTTCCCSSEEHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHH-TSSEEETTSCHHHHHHHHHHEEE
T ss_pred cHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceeEeCCccccccc-CCcceeecCcHHHHHHHHhheec
Confidence 67788887 43 568999999999999999999999999999996 7899999 999999998 99999999875
Q ss_pred C
Q 044317 120 T 120 (123)
Q Consensus 120 ~ 120 (123)
.
T Consensus 107 ~ 107 (130)
T 3dac_M 107 L 107 (130)
T ss_dssp C
T ss_pred c
Confidence 3
No 5
>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A
Probab=97.44 E-value=0.0001 Score=51.74 Aligned_cols=72 Identities=14% Similarity=0.202 Sum_probs=62.2
Q ss_pred CHHHHhhh---CC--CCCCHHHHHHHHHHHhhhcCCCCCCCCCccccc-hhHHhhhcCCCccCHH---HHHHHHHhccCC
Q 044317 49 TSELGRFL---NI--PEPPRSETAKLITKFIKLNNRENPGMKKDLLGE-EKLKSLLSGKDRIGIP---EIAKLLSGQFVK 119 (123)
Q Consensus 49 S~eLa~fL---G~--~e~sR~evvk~lW~YIK~n~LQDp~nKr~I~cD-ekLk~LF~g~d~i~~~---~i~klL~~Hl~k 119 (123)
-++|-.+| |. +..|..||+..+=+||-.+.|.||.+..+|.|. +.|-.+| |+++|++. .+.+.|..||+.
T Consensus 19 k~~lL~iLq~aGA~~d~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~-G~~sFsvkdp~~l~~ml~~nLv~ 97 (100)
T 3fea_A 19 KLPLLKILHAAGAQGEMFTVKEVMHYLGQYIMVKQLYDQQEQHMVYCGGDLLGELL-GRQSFSVKDPSPLYDMLRKNLVT 97 (100)
T ss_dssp CHHHHHHHHHTTCCSSCBCHHHHHHHHHHHHHHTTCEETTEEEEEECTTSHHHHHH-TCSEEETTCCHHHHHHHHHHEEC
T ss_pred cHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceEEeCCCcccccc-CCcceeecCchHHHHHHHhhcee
Confidence 67788887 43 568999999999999999999999999999997 7889999 99999987 688999999875
Q ss_pred CC
Q 044317 120 TG 121 (123)
Q Consensus 120 ~~ 121 (123)
..
T Consensus 98 ~~ 99 (100)
T 3fea_A 98 LA 99 (100)
T ss_dssp --
T ss_pred cC
Confidence 43
No 6
>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} SCOP: a.42.1.1
Probab=97.40 E-value=0.00025 Score=50.31 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=57.0
Q ss_pred CHHHHhhh---CC--CCCCHHHHHHHHHHHhhhcCCCCCCCCCccccc-hhHHhhhcCCCccCHHHHH---HHHHhcc
Q 044317 49 TSELGRFL---NI--PEPPRSETAKLITKFIKLNNRENPGMKKDLLGE-EKLKSLLSGKDRIGIPEIA---KLLSGQF 117 (123)
Q Consensus 49 S~eLa~fL---G~--~e~sR~evvk~lW~YIK~n~LQDp~nKr~I~cD-ekLk~LF~g~d~i~~~~i~---klL~~Hl 117 (123)
.++|..+| |- ..-|+-+|+..+-+||-.+.|.|+.+..+|.|. +.|-.|| |+++|++.+.. +.|.+.+
T Consensus 15 k~~LLklL~~~GA~~~~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~-g~~~Fsvkdp~~l~~ml~~nL 91 (107)
T 1ycq_A 15 TPLLLSLLKSAGAQKETFTMKEVIYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELF-GVQEFSVKEPRRLYAMISRNL 91 (107)
T ss_dssp CHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHH-TCSEEETTCHHHHHHHHHTTE
T ss_pred cHHHHHHHHHhccccceeeehhhhhhHHHHHhHHhhcccccCcEEeeCCccccccc-CccceeecCcHHHHHHHHHhc
Confidence 67787887 43 568999999999999999999999999999997 7779999 99999988765 4444444
No 7
>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens}
Probab=97.39 E-value=0.00025 Score=51.06 Aligned_cols=68 Identities=13% Similarity=0.144 Sum_probs=56.4
Q ss_pred CHHHHhhh---CC--CCCCHHHHHHHHHHHhhhcCCCCCCCCCccccc-hhHHhhhcCCCccCHHHHHHHHHhcc
Q 044317 49 TSELGRFL---NI--PEPPRSETAKLITKFIKLNNRENPGMKKDLLGE-EKLKSLLSGKDRIGIPEIAKLLSGQF 117 (123)
Q Consensus 49 S~eLa~fL---G~--~e~sR~evvk~lW~YIK~n~LQDp~nKr~I~cD-ekLk~LF~g~d~i~~~~i~klL~~Hl 117 (123)
.++|-.|| |- ..-++-+|+..+-+||-.+.|.|+.+..+|.|. +.|-.|| |+++|++.+-..+...|+
T Consensus 31 k~~LLkiLq~aGA~~~vfT~keV~~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~-g~~~Fsvkdp~~l~~ml~ 104 (119)
T 1z1m_A 31 KPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLF-GVPSFSVKEHRKIYTMIY 104 (119)
T ss_dssp STTSHHHHHHHTCCCSCCCTTHHHHHHHHHHHTTTCSCSSSSCEECCTTSHHHHHS-CCSCEETTCHHHHHHHHS
T ss_pred cHHHHHHHHHhccccceeechheeehhhhhhhHhhhcccccCcEEeeCCccccccc-CccceeecCcHHHHHHHH
Confidence 55666666 53 568999999999999999999999999999997 7779999 999999887655555443
No 8
>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M
Probab=97.36 E-value=0.00019 Score=52.88 Aligned_cols=69 Identities=13% Similarity=0.168 Sum_probs=58.3
Q ss_pred CHHHHhhh---CC--CCCCHHHHHHHHHHHhhhcCCCCCCCCCccccc-hhHHhhhcCCCccCHHHHH---HHHHhccC
Q 044317 49 TSELGRFL---NI--PEPPRSETAKLITKFIKLNNRENPGMKKDLLGE-EKLKSLLSGKDRIGIPEIA---KLLSGQFV 118 (123)
Q Consensus 49 S~eLa~fL---G~--~e~sR~evvk~lW~YIK~n~LQDp~nKr~I~cD-ekLk~LF~g~d~i~~~~i~---klL~~Hl~ 118 (123)
-++|-.|| |. ..-|+-||+..+-+||-.+.|.|+.+..+|.|. +.|-.|| |+++|++.+.. +.|.+-++
T Consensus 27 k~~LLkiLq~aGA~~~~fT~keVm~YLGqYIm~KqLYD~~~qhiV~C~~D~LG~l~-Gv~sFSVKdp~~ly~ML~~NLv 104 (140)
T 2z5s_M 27 RAPLLQILKVAGAQEEVFTLKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELL-EVGSFSVKNPSPVYEMLKRNLV 104 (140)
T ss_dssp CHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHH-TSSEEETTBCHHHHHHHHHHEE
T ss_pred cHHHHHHHHHhCcccceeeHHHHHHHHHHHHHHhhhcccccCcEEeeCCccccccc-CccceeecCcHHHHHHHHHhcc
Confidence 77888888 53 568999999999999999999999999999997 7789999 99999987644 55555444
No 9
>2axi_A Ubiquitin-protein ligase E3 MDM2; drug design, protein-protein interactions, ligase, LIGA inhibitor complex; HET: 6CW MPO; 1.40A {Homo sapiens} SCOP: a.42.1.1 PDB: 1ycr_A 2gv2_A* 1t4f_M* 3jzr_A 3g03_A 3tu1_A* 3jzk_A* 1t4e_A* 3lbl_A* 4dij_A* 3lbk_A* 3v3b_A* 3jzs_A 3eqs_A 3iux_A* 3iwy_A* 3lnj_A* 3lnz_A 1rv1_A* 1ttv_A*
Probab=97.10 E-value=0.00023 Score=51.04 Aligned_cols=66 Identities=14% Similarity=0.132 Sum_probs=55.5
Q ss_pred CHHHHhhh---CC--CCCCHHHHHHHHHHHhhhcCCCCCCCCCccccc-hhHHhhhcCCCccCHHHHHHHHHh
Q 044317 49 TSELGRFL---NI--PEPPRSETAKLITKFIKLNNRENPGMKKDLLGE-EKLKSLLSGKDRIGIPEIAKLLSG 115 (123)
Q Consensus 49 S~eLa~fL---G~--~e~sR~evvk~lW~YIK~n~LQDp~nKr~I~cD-ekLk~LF~g~d~i~~~~i~klL~~ 115 (123)
.++|..+| |- ..-|+-+|+-.+-+||-.+.|.||.+..+|.|. +.|-.|| |+++|++.+-..+...
T Consensus 15 k~~LLklLq~~GA~~~vfT~keVm~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~-g~~~Fsvkdp~~l~~m 86 (115)
T 2axi_A 15 KPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLF-GVPSFSVKEHRKIYTM 86 (115)
T ss_dssp CHHHHHHHHHTTCCCSCEEHHHHHHHHHHHHHHHTCEETTEEEEEECTTSHHHHHH-SSSEEETTCHHHHHHH
T ss_pred cHHHHHHHHHhccccceeechhheehhhhhhhHhhhcccccCcEEeeCCccccccc-CccceeecCcHHHHHH
Confidence 67788887 43 567899999999999999999999999999997 7789999 9999998765544433
No 10
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=86.07 E-value=0.81 Score=28.62 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=46.3
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCCCCCCCCccccchhHHhhhcCCCccCHHHHHHHHHhccC
Q 044317 57 NIPEPPRSETAKLITKFIKLNNRENPGMKKDLLGEEKLKSLLSGKDRIGIPEIAKLLSGQFV 118 (123)
Q Consensus 57 G~~e~sR~evvk~lW~YIK~n~LQDp~nKr~I~cDekLk~LF~g~d~i~~~~i~klL~~Hl~ 118 (123)
|-..|+|.++...|.++|.+.-=.+ ...|..|..|..-+ |-|++.+.+|...|..+|-
T Consensus 1 ~~~~m~~~~i~~~l~~~i~~~l~~~---~~~i~~~~~l~~dl-G~DSl~~vel~~~le~~fg 58 (84)
T 2kwl_A 1 GPGSMDNDEIFSKVRSIISEQLDKK---EDEITTDSRFVEDL-NADSLDIYELLYLLEEAFD 58 (84)
T ss_dssp CCCCSTHHHHHHHHHHHHHHHHCCC---GGGCCTTTHHHHTS-SSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCC---cccCCCCCchhhhc-CCCHHHHHHHHHHHHHHHC
Confidence 4567999999999999998863223 24688999997778 8999999999988888764
No 11
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=77.08 E-value=2 Score=26.43 Aligned_cols=55 Identities=24% Similarity=0.242 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCCCccccchhHHhhhcCCCccCHHHHHHHHHhccC
Q 044317 60 EPPRSETAKLITKFIKLNNRENPGMKKDLLGEEKLKSLLSGKDRIGIPEIAKLLSGQFV 118 (123)
Q Consensus 60 e~sR~evvk~lW~YIK~n~LQDp~nKr~I~cDekLk~LF~g~d~i~~~~i~klL~~Hl~ 118 (123)
+|+|.++...|.++|.+.-=.++ ..|..|..|..-+ |-|++.+-++...|..+|-
T Consensus 2 ~m~~~~i~~~l~~~l~~~l~~~~---~~i~~~~~l~~dl-G~DSl~~vel~~~le~~fg 56 (81)
T 1f80_D 2 PLGSADTLERVTKIIVDRLGVDE---ADVKLEASFKEDL-GADXLDVVELVMELEDEFD 56 (81)
T ss_dssp ---CCHHHHHHHHHHHHHSSCCS---SCCCTTCBHHHHS-CCCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCH---HhCCCccchHHHc-CCcHHHHHHHHHHHHHHhC
Confidence 57888899999999887642232 4688999997778 8999999999999988874
No 12
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=74.10 E-value=4.9 Score=24.54 Aligned_cols=54 Identities=6% Similarity=0.117 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCCCCccccchhHHhhhcCCCccCHHHHHHHHHhccC
Q 044317 61 PPRSETAKLITKFIKLNNRENPGMKKDLLGEEKLKSLLSGKDRIGIPEIAKLLSGQFV 118 (123)
Q Consensus 61 ~sR~evvk~lW~YIK~n~LQDp~nKr~I~cDekLk~LF~g~d~i~~~~i~klL~~Hl~ 118 (123)
++|.++...|.++|.+.-=.++ ..|..|..|..-+ |-|++..-++...|..+|-
T Consensus 2 m~~~~i~~~l~~ii~~~l~~~~---~~i~~~~~l~~dl-G~DSl~~~el~~~le~~fg 55 (81)
T 2lol_A 2 STTDKIEQKVIEMVAEKLNKDK---AIITTDSRFIEDL-KADSLDTVELMMAIEVEYG 55 (81)
T ss_dssp CSHHHHHHHHHHHHHHHSCCCT---TTCCTTCCHHHHT-TCCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHCCCh---hhCCCCCcHHHhc-CCcHHHHHHHHHHHHHHHC
Confidence 5788898999888887532222 3588888887667 8999999999988888773
No 13
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=72.77 E-value=5.6 Score=24.18 Aligned_cols=55 Identities=11% Similarity=0.123 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCCCccccchhHHhhhcCCCccCHHHHHHHHHhccC
Q 044317 60 EPPRSETAKLITKFIKLNNRENPGMKKDLLGEEKLKSLLSGKDRIGIPEIAKLLSGQFV 118 (123)
Q Consensus 60 e~sR~evvk~lW~YIK~n~LQDp~nKr~I~cDekLk~LF~g~d~i~~~~i~klL~~Hl~ 118 (123)
.|+|.++...|.++|.+.-=.+ ...|..|..|..-+ |-|++...++...|..+|-
T Consensus 2 ~m~~~~i~~~l~~~i~~~l~~~---~~~i~~~~~l~~dl-G~DSl~~~~l~~~le~~fg 56 (82)
T 2cnr_A 2 AATQEEIVAGLAEIVNEIAGIP---VEDVKLDKSFTDDL-DVDSLSMVEVVVAAEERFD 56 (82)
T ss_dssp CCCHHHHHHHHHHHHHHHSCCC---TTTCCTTSBTTTTS-CCCHHHHHHHHHHHHGGGT
T ss_pred CCCHHHHHHHHHHHHHHHhCCC---HHHCCCCcchhhcc-CCChHHHHHHHHHHHHHhC
Confidence 3789999999999998753222 23577888876556 7899999999999988874
No 14
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.05 E-value=4 Score=26.48 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=41.0
Q ss_pred hhCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCccccchhHHhhhcCCCccCHHHHHHHHHhcc
Q 044317 55 FLNIPEPPRSETAKLITKFIKLNNRENPGMKKDLLGEEKLKSLLSGKDRIGIPEIAKLLSGQF 117 (123)
Q Consensus 55 fLG~~e~sR~evvk~lW~YIK~n~LQDp~nKr~I~cDekLk~LF~g~d~i~~~~i~klL~~Hl 117 (123)
|.+...+++.++...|.+.|.+.-=.++ ..|..|..|..-+ |-|++.+.+|...|..+|
T Consensus 5 ~~~m~~m~~~~i~~~l~~~l~~~l~~~~---~~i~~d~~l~~dl-G~DSL~~vel~~~le~~f 63 (99)
T 2dnw_A 5 SSGMPPLTLEGIQDRVLYVLKLYDKIDP---EKLSVNSHFMKDL-GLDSLDQVEIIMAMEDEF 63 (99)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHCTTSCT---TTCCTTCCCCCCC-CCCHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHhCCCH---hhCCCCCchhhhc-CCCHHHHHHHHHHHHHHH
Confidence 3456789999999999999987632222 3566777764335 677777777777776665
No 15
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=67.35 E-value=4.6 Score=29.26 Aligned_cols=64 Identities=14% Similarity=0.170 Sum_probs=34.8
Q ss_pred CHHHHhhhCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCccccc-hhHHhhhcCCC------ccCHHHHHHHHHhc
Q 044317 49 TSELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKKDLLGE-EKLKSLLSGKD------RIGIPEIAKLLSGQ 116 (123)
Q Consensus 49 S~eLa~fLG~~e~sR~evvk~lW~YIK~n~LQDp~nKr~I~cD-ekLk~LF~g~d------~i~~~~i~klL~~H 116 (123)
-.+||++||++ |..|. .+..-.++.++-+-..+++++.| +.|+.+.++.. +-.+..+.++|.+|
T Consensus 180 ~~~iA~~lG~s---r~tvs-R~l~~L~~~g~I~~~~~~i~i~d~~~L~~~a~~~~~~~~~~~~~~~~l~~~~~~~ 250 (250)
T 3e6c_C 180 QKSIGEITGVH---HVTVS-RVLASLKRENILDKKKNKIIVYNLGELKHLSEQTSYYSDPNSSSVDKLAAALDHH 250 (250)
T ss_dssp HHHHHHHHTCC---HHHHH-HHHHHHHHTTSEEECSSEEEESCHHHHHHHHTSSCCCC-----------------
T ss_pred HHHHHHHhCCc---HHHHH-HHHHHHHHCCCeEeCCCEEEEecHHHHHHHHccCcccccCCchhHHHHHHhhccC
Confidence 36899999974 44443 44455566777777778888888 88999984321 12234455566555
No 16
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=63.50 E-value=8.9 Score=27.23 Aligned_cols=44 Identities=7% Similarity=0.100 Sum_probs=32.0
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCccccc-hhHHhhh
Q 044317 50 SELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKKDLLGE-EKLKSLL 98 (123)
Q Consensus 50 ~eLa~fLG~~e~sR~evvk~lW~YIK~n~LQDp~nKr~I~cD-ekLk~LF 98 (123)
.+||++||+ ||..|...+-+ .++.++ .-..+++++.| +.|+.+.
T Consensus 182 ~~iA~~lg~---sr~tvsR~l~~-L~~~gi-~~~~~~i~I~d~~~L~~~~ 226 (237)
T 3fx3_A 182 MLIAGRLGM---KPESLSRAFSR-LKAAGV-TVKRNHAEIEDIALLRDYA 226 (237)
T ss_dssp HHHHHHTTC---CHHHHHHHHHH-HGGGTE-ECCTTEEEESCHHHHHHHH
T ss_pred HHHHHHhCC---CHHHHHHHHHH-HHHCCe-EeeCCEEEEcCHHHHHHHh
Confidence 689999997 45555555444 455568 56777888888 7888888
No 17
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=63.17 E-value=4.4 Score=25.26 Aligned_cols=53 Identities=11% Similarity=-0.030 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHhhhcCCCCCCCCCccccchhHHhhhcCCCccCHHHHHHHHHhccC
Q 044317 62 PRSETAKLITKFIKLNNRENPGMKKDLLGEEKLKSLLSGKDRIGIPEIAKLLSGQFV 118 (123)
Q Consensus 62 sR~evvk~lW~YIK~n~LQDp~nKr~I~cDekLk~LF~g~d~i~~~~i~klL~~Hl~ 118 (123)
+|.++...|.+||.+.--.++ ..|..|..|..+. +-|++.+-+|--.|..+|-
T Consensus 1 ~~~~i~~~i~~il~~~~~~~~---~~i~~d~~l~~~g-~lDSl~~velv~~lE~~fg 53 (80)
T 1dv5_A 1 ADEAIKNGVLDILADLTGSDD---VKKNLDLNLFETG-LLDSMGTVQLLLELQSQFG 53 (80)
T ss_dssp CCHHHHHHHHHHHHHHHTSSS---TTTCSSCCSSTTS-SCCSHHHHHHHHHHTTTSC
T ss_pred CHHHHHHHHHHHHHHHhCCCc---ccCCCCcchhhcc-CcChHHHHHHHHHHHHHhC
Confidence 467888899999987652232 3478888887765 6899999999999998873
No 18
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=62.01 E-value=4.2 Score=24.57 Aligned_cols=54 Identities=17% Similarity=0.145 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCCCCccccchhHHhhhcCCCccCHHHHHHHHHhccC
Q 044317 61 PPRSETAKLITKFIKLNNRENPGMKKDLLGEEKLKSLLSGKDRIGIPEIAKLLSGQFV 118 (123)
Q Consensus 61 ~sR~evvk~lW~YIK~n~LQDp~nKr~I~cDekLk~LF~g~d~i~~~~i~klL~~Hl~ 118 (123)
|+|.++...|.++|.+.-=.+ ...|..|..|..-+ |-|++..-+|...|..+|-
T Consensus 1 M~~~~i~~~l~~~i~~~l~~~---~~~i~~~~~l~~~l-G~DSl~~~~l~~~le~~fg 54 (80)
T 1x3o_A 1 MTEQEIFEKVKAVIADKLQVE---PEKVTLEARFIEDL-GADSLDTVELIMGLEDEFG 54 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHTCC---GGGCCTTCBTTTTT-CCCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHhCCC---HHHCCCcCcHHhhc-CccHHHHHHHHHHHHHHHC
Confidence 678888888888887752112 23577888875567 8899999998888887763
No 19
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=58.81 E-value=9.9 Score=25.16 Aligned_cols=55 Identities=13% Similarity=0.196 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCCCCCccccchhHHhhhcCCCccCHHHHHHHHHhccC
Q 044317 59 PEPPRSETAKLITKFIKLNNRENPGMKKDLLGEEKLKSLLSGKDRIGIPEIAKLLSGQFV 118 (123)
Q Consensus 59 ~e~sR~evvk~lW~YIK~n~LQDp~nKr~I~cDekLk~LF~g~d~i~~~~i~klL~~Hl~ 118 (123)
..|.|.++...|.++|.+.-=.++ ..|..|..| .-+ |-|++.+.+|--.|...|-
T Consensus 11 ~~~~~~~i~~~l~~ila~~l~v~~---~~I~~d~~L-~dL-GlDSL~~veL~~~LE~~fg 65 (100)
T 1vku_A 11 HHMERKKLIAKFVEIASEKMGKDL---ETVDEENTF-KEL-GFDSIDVIDLVMFFEDEFA 65 (100)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCCCC---CSCCTTSBT-TTT-TCCHHHHHHHHHHHHHHHT
T ss_pred hhccHHHHHHHHHHHHHHHHCCCH---HHCCCCCCH-HHc-CCchHHHHHHHHHHHHHHC
Confidence 568999999999999988642333 368899999 667 8999999999888887763
No 20
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=57.61 E-value=13 Score=22.55 Aligned_cols=53 Identities=19% Similarity=0.250 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHhhhcCCCCCCCCCccccchhHHhhhcCCCccCHHHHHHHHHhccC
Q 044317 62 PRSETAKLITKFIKLNNRENPGMKKDLLGEEKLKSLLSGKDRIGIPEIAKLLSGQFV 118 (123)
Q Consensus 62 sR~evvk~lW~YIK~n~LQDp~nKr~I~cDekLk~LF~g~d~i~~~~i~klL~~Hl~ 118 (123)
+|.++...|.+.|.+.==.+++ ..|-.|..|. =+ |-|++.+-+|...|..+|-
T Consensus 1 ~~~~i~~~l~~i~~~~l~~~~~--~~i~~~~~l~-dl-G~DSl~~vel~~~le~~fg 53 (82)
T 2ava_A 1 AKKETIDKVSDIVKEKLALGAD--VVVTADSEFS-KL-GADSLDTVEIVMNLEEEFG 53 (82)
T ss_dssp CCHHHHHHHHHHHHHHTTCSSS--SCCCSSCCSC-CC-TTCCSCHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHhCCCcc--cccCCCCchh-hc-CCCHHHHHHHHHHHHHHHC
Confidence 5677888888888775322322 2577888887 46 8899999999999988873
No 21
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*
Probab=55.76 E-value=11 Score=23.20 Aligned_cols=55 Identities=15% Similarity=0.116 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHhhhcCCCCCC-CCCccccchhHHhhhcCCCccCHHHHHHHHHhccC
Q 044317 62 PRSETAKLITKFIKLNNRENPG-MKKDLLGEEKLKSLLSGKDRIGIPEIAKLLSGQFV 118 (123)
Q Consensus 62 sR~evvk~lW~YIK~n~LQDp~-nKr~I~cDekLk~LF~g~d~i~~~~i~klL~~Hl~ 118 (123)
+|..+...|.+.|.+.=-.++. +-..|..|..| .=+ |-|++.+.+|-..|..+|-
T Consensus 2 ~~~~~~~~l~~il~~~l~~~~~~~~~~i~~~~~l-~dl-G~DSL~~vel~~~le~~fg 57 (86)
T 1af8_A 2 ATLLTTDDLRRALVECAGETDGTDLSGDFLDLRF-EDI-GYDSLALMETAARLESRYG 57 (86)
T ss_dssp CCSSCHHHHHHHHHTTCCCCSCCCTTTCSSTTST-TTT-TCCTTTHHHHHHHHTTTTC
T ss_pred chHHHHHHHHHHHHHHhCCCcccccccCCCCCCh-hhc-CCCHHHHHHHHHHHHHHHC
Confidence 3334455566666554322333 11256788888 456 8999999999999988874
No 22
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1
Probab=54.88 E-value=11 Score=25.07 Aligned_cols=55 Identities=18% Similarity=0.202 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCCCccccchhHHhhhcCCCccCHHHHHHHHHhccC
Q 044317 60 EPPRSETAKLITKFIKLNNRENPGMKKDLLGEEKLKSLLSGKDRIGIPEIAKLLSGQFV 118 (123)
Q Consensus 60 e~sR~evvk~lW~YIK~n~LQDp~nKr~I~cDekLk~LF~g~d~i~~~~i~klL~~Hl~ 118 (123)
.|++.++...|.++|.+.-=.++ ..|..|..|..-+ |-|++.+-+|-..|..+|-
T Consensus 2 ~m~~~~i~~~l~~il~~~l~~~~---~~i~~d~~l~~dl-G~DSL~~vel~~~lE~~fg 56 (115)
T 1klp_A 2 PVTQEEIIAGIAEIIEEVTGIEP---SEITPEKSFVDDL-DIDSLSMVEIAVQTEDKYG 56 (115)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCCT---TTCCTTCCTTTTT-CSHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHhCcCH---HhCCCCCchhhcc-CCCHHHHHHHHHHHHHHHC
Confidence 47899999999999987532232 4577888886567 8899998898888888764
No 23
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=52.69 E-value=4.7 Score=28.46 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=30.3
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHhhhcCCCCCC-CCCccccc-hhHHhhh
Q 044317 50 SELGRFLNIPEPPRSETAKLITKFIKLNNRENPG-MKKDLLGE-EKLKSLL 98 (123)
Q Consensus 50 ~eLa~fLG~~e~sR~evvk~lW~YIK~n~LQDp~-nKr~I~cD-ekLk~LF 98 (123)
.+||++||++ |..|...+ .-.++.++-.-. .+++++.| +.|+.+.
T Consensus 171 ~~lA~~lg~s---r~tvsR~l-~~l~~~g~I~~~~~~~i~i~d~~~L~~~~ 217 (220)
T 2fmy_A 171 EEIALMLGTT---RQTVSVLL-NDFKKMGILERVNQRTLLLKDLQKLKEFS 217 (220)
T ss_dssp HHHHHHHTSC---HHHHHHHH-HHHHHTTSEEESSSSEEEESCHHHHHHHC
T ss_pred HHHHHHhCCc---HHHHHHHH-HHHHHCCCEEEcCCCEEEEcCHHHHHHHh
Confidence 6899999974 44443333 334667776665 66788888 6777766
No 24
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1
Probab=52.55 E-value=8.6 Score=25.54 Aligned_cols=56 Identities=9% Similarity=0.005 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCCCccccchhHHhhhcCCCccCHHHHHHHHHhccC
Q 044317 60 EPPRSETAKLITKFIKLNNRENPGMKKDLLGEEKLKSLLSGKDRIGIPEIAKLLSGQFV 118 (123)
Q Consensus 60 e~sR~evvk~lW~YIK~n~LQDp~nKr~I~cDekLk~LF~g~d~i~~~~i~klL~~Hl~ 118 (123)
..++.++...|.++|.+.--.+ -+...|-.|..|.. + |-|++.+.+|--.|...|-
T Consensus 17 ~~~~~~i~~~i~~il~~~l~~~-v~~~~i~~d~~l~d-l-GlDSL~~veLv~~lE~~fg 72 (105)
T 2jq4_A 17 LYFQGHMNATIREILAKFGQLP-TPVDTIADEADLYA-A-GLSSFASVQLMLGIEEAFD 72 (105)
T ss_dssp ------CHHHHHHHHHHTSCCS-SCGGGCCTTSCGGG-G-TCCHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHhccC-CCcccCCCCCCHhh-c-CCCHHHHHHHHHHHHHHHC
Confidence 4678888999999999863112 22356889999985 7 8999999999888887763
No 25
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=52.12 E-value=1.9 Score=27.25 Aligned_cols=57 Identities=14% Similarity=0.102 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHhhhcC-CCCCCCCCccccchhHHhhhcCCCccCHHHHHHHHHhccC
Q 044317 60 EPPRSETAKLITKFIKLNN-RENPGMKKDLLGEEKLKSLLSGKDRIGIPEIAKLLSGQFV 118 (123)
Q Consensus 60 e~sR~evvk~lW~YIK~n~-LQDp~nKr~I~cDekLk~LF~g~d~i~~~~i~klL~~Hl~ 118 (123)
.|+|.++...|.++|.+.- +.+ -+...|..|..|..-+ |-|++.+-+|--.|..+|-
T Consensus 3 ~m~~~~i~~~v~~~i~~~l~~~~-~~~~~i~~d~~l~~dl-glDSl~~vel~~~lE~~fg 60 (88)
T 2l4b_A 3 SMVSEEIKAQVMESVIGCLKLND-EQKQILSGTTNLAKDF-NLDSLDFVDLIMSLEERFS 60 (88)
T ss_dssp SSSCHHHHHHHHHHHHHHHTCCH-HHHHSCCTTSCTTTTT-TCCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHhhCC-CCHhhCCCCCchhhcc-CCcHHHHHHHHHHHHHHHC
Confidence 4789999999999998863 211 0113577888886667 8999999999888888764
No 26
>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis}
Probab=51.76 E-value=7.1 Score=26.75 Aligned_cols=52 Identities=13% Similarity=0.181 Sum_probs=39.9
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCCCCCCCCccccchhHHhhhcCCCccCHHHHHHHHHhccC
Q 044317 57 NIPEPPRSETAKLITKFIKLNNRENPGMKKDLLGEEKLKSLLSGKDRIGIPEIAKLLSGQFV 118 (123)
Q Consensus 57 G~~e~sR~evvk~lW~YIK~n~LQDp~nKr~I~cDekLk~LF~g~d~i~~~~i~klL~~Hl~ 118 (123)
+...| |.++...|.++|.+.- . |..|..|..-+ |-|++.+-+|--.|...|-
T Consensus 23 ~~~~M-~~ei~~~v~~il~e~l-~-------I~~d~~l~~dL-GlDSLd~veLi~~LEe~Fg 74 (113)
T 2cgq_A 23 FQGAM-EEAINATIQRILRTDR-G-------ITANQVLVDDL-GFDSLKLFQLITELEDEFD 74 (113)
T ss_dssp ---CH-HHHHHHHHHHHHTCCS-C-------CCTTCBTTTTT-CCCHHHHHHHHHHHHHHHT
T ss_pred hcccc-HHHHHHHHHHHHHHHh-C-------CCCCCchhhhc-CCCHHHHHHHHHHHHHHhC
Confidence 33467 9999999999998753 1 77888887777 8999999998888877663
No 27
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=50.36 E-value=5.7 Score=27.72 Aligned_cols=45 Identities=20% Similarity=0.139 Sum_probs=32.5
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCccccc-hhHHhhh
Q 044317 50 SELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKKDLLGE-EKLKSLL 98 (123)
Q Consensus 50 ~eLa~fLG~~e~sR~evvk~lW~YIK~n~LQDp~nKr~I~cD-ekLk~LF 98 (123)
.+||++||++ |..|. .+..-.++.++-.-+.+++++.| +.|+.+.
T Consensus 150 ~~lA~~lg~s---r~tvs-R~l~~L~~~g~I~~~~~~i~i~d~~~L~~~~ 195 (202)
T 2zcw_A 150 DELAAAVGSV---RETVT-KVIGELAREGYIRSGYGKIQLLDLKGLKELA 195 (202)
T ss_dssp HHHHHHHTCC---HHHHH-HHHHHHHHTTSEEEETTEEEESCHHHHHHHH
T ss_pred HHHHHHhCCC---HHHHH-HHHHHHHHCCCEEeCCCEEEEeCHHHHHHHh
Confidence 6899999974 44443 34444577777777778888888 6788877
No 28
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=45.73 E-value=8.1 Score=27.78 Aligned_cols=48 Identities=19% Similarity=0.034 Sum_probs=33.7
Q ss_pred CCC-HHHHhhhCCCC-CCHHHHHHHHHHHhhhcCCCCCCCCCccccc-hhHHhhh
Q 044317 47 SST-SELGRFLNIPE-PPRSETAKLITKFIKLNNRENPGMKKDLLGE-EKLKSLL 98 (123)
Q Consensus 47 ~LS-~eLa~fLG~~e-~sR~evvk~lW~YIK~n~LQDp~nKr~I~cD-ekLk~LF 98 (123)
.+| .+||++||++. .+=+.++ .-.++.++-+-..+++++.| +.|+.+.
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l----~~l~~~glI~~~~~~i~I~d~~~L~~~~ 219 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRII----SKLKQEKVIVYKNSCFYVQNLDYLKRYA 219 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHH----HHHHHTTSEEEETTEEEESCHHHHHHHC
T ss_pred cCCHHHHHHHhCCChHHHHHHHH----HHHHHCCCEEecCCEEEEeCHHHHHHHh
Confidence 455 68999999865 4444444 44477888777777888888 5777776
No 29
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=45.29 E-value=15 Score=25.88 Aligned_cols=46 Identities=15% Similarity=0.073 Sum_probs=33.3
Q ss_pred CHHHHhhhCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCccccc-hhHHhhh
Q 044317 49 TSELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKKDLLGE-EKLKSLL 98 (123)
Q Consensus 49 S~eLa~fLG~~e~sR~evvk~lW~YIK~n~LQDp~nKr~I~cD-ekLk~LF 98 (123)
-.+||++||++.. .+..+..-.++.++-+-+.+++++.| +.|+.+-
T Consensus 178 ~~~iA~~lg~sr~----tvsR~l~~L~~~g~I~~~~~~i~i~d~~~L~~~a 224 (231)
T 3e97_A 178 TQDIMARTSSSRE----TVSRVLKRLEAHNILEVSPRSVTLLDLAALEALS 224 (231)
T ss_dssp HHHHHHHHTCCHH----HHHHHHHHHHHTTSEEECSSCEEESCHHHHHHCC
T ss_pred HHHHHHHhCCcHH----HHHHHHHHHHHCCcEEecCCEEEEeCHHHHHHHH
Confidence 3689999998543 34444555677888777788898998 5677765
No 30
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=44.52 E-value=6.3 Score=27.96 Aligned_cols=45 Identities=11% Similarity=0.028 Sum_probs=31.2
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCccccc-hhHHhhh
Q 044317 50 SELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKKDLLGE-EKLKSLL 98 (123)
Q Consensus 50 ~eLa~fLG~~e~sR~evvk~lW~YIK~n~LQDp~nKr~I~cD-ekLk~LF 98 (123)
.+||++||++.. .| ..+-.-.++.++-.-+.+++++.| +.|+.+.
T Consensus 184 ~~lA~~lg~sr~---tv-sR~l~~l~~~g~I~~~~~~i~i~d~~~L~~~~ 229 (232)
T 2gau_A 184 EELATLSNMTVS---NA-IRTLSTFVSERMLALDGKRIKIIDCDRLQKTA 229 (232)
T ss_dssp HHHHHHTTSCHH---HH-HHHHHHHHHTTSEEEETTEEEESCHHHHHHHH
T ss_pred HHHHHHhCCCHH---HH-HHHHHHHHHCCCEeeCCCEEEEeCHHHHHHHh
Confidence 789999998643 33 333344577788777778888888 5777654
No 31
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=44.05 E-value=11 Score=26.55 Aligned_cols=45 Identities=11% Similarity=0.087 Sum_probs=30.8
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHhhhcCCCCCCCCC-ccccc-hhHHhhh
Q 044317 50 SELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKK-DLLGE-EKLKSLL 98 (123)
Q Consensus 50 ~eLa~fLG~~e~sR~evvk~lW~YIK~n~LQDp~nKr-~I~cD-ekLk~LF 98 (123)
.+||++||++ |..|. .+..-.++.++-.-..++ +++.| +.|+.+.
T Consensus 167 ~~lA~~lG~s---r~tvs-R~l~~L~~~g~I~~~~~~i~~i~d~~~L~~~~ 213 (222)
T 1ft9_A 167 EEIANLIGSS---RQTTS-TALNSLIKEGYISRQGRGHYTIPNLVRLKAAA 213 (222)
T ss_dssp HHHHHHHCSC---HHHHH-HHHHHHHHTTSSEECSTTCEECSSHHHHHHTC
T ss_pred HHHHHHhCCc---HHHHH-HHHHHHHHCCcEEEcCCceEEEcCHHHHHHHH
Confidence 7899999985 43333 333445777777777777 56667 5788877
No 32
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=42.87 E-value=18 Score=25.00 Aligned_cols=46 Identities=13% Similarity=0.094 Sum_probs=32.5
Q ss_pred CHHHHhhhCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCccccc-hhHHhhh
Q 044317 49 TSELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKKDLLGE-EKLKSLL 98 (123)
Q Consensus 49 S~eLa~fLG~~e~sR~evvk~lW~YIK~n~LQDp~nKr~I~cD-ekLk~LF 98 (123)
-.+||+++|++ |.. +..+..-.++.++-+-+.+++++.| +.|+.+-
T Consensus 166 ~~~lA~~lg~s---r~t-vsR~l~~l~~~g~I~~~~~~i~i~d~~~L~~~a 212 (216)
T 4ev0_A 166 HHELAALAGTS---RET-VSRVLHALAEEGVVRLGPGTVEVREAALLEEIA 212 (216)
T ss_dssp HHHHHHHHTSC---HHH-HHHHHHHHHHTTSEEEETTEEEESCHHHHHHHH
T ss_pred HHHHHHHhCCC---HHH-HHHHHHHHHHCCCEEecCCEEEEeCHHHHHHHh
Confidence 47899999985 333 4444555677777777778888888 5677765
No 33
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=42.18 E-value=7.8 Score=26.89 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=31.6
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCccccc-hhHHhhh
Q 044317 50 SELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKKDLLGE-EKLKSLL 98 (123)
Q Consensus 50 ~eLa~fLG~~e~sR~evvk~lW~YIK~n~LQDp~nKr~I~cD-ekLk~LF 98 (123)
.+||++||+ ||..|...+-+ .++.++-+-+.+++++.| +.|+.+.
T Consensus 143 ~~lA~~lg~---sr~tvsR~l~~-L~~~g~I~~~~~~i~i~d~~~L~~~~ 188 (195)
T 3b02_A 143 EEIADATAS---IRESVSKVLAD-LRREGLIATAYRRVYLLDLAALEREA 188 (195)
T ss_dssp HHHHHTTTS---CHHHHHHHHHH-HHHHTSEEEETTEEEECCHHHHHHHH
T ss_pred HHHHHHhCC---CHHHHHHHHHH-HHHCCCEEecCCEEEEeCHHHHHHHh
Confidence 689999998 44444444444 456667666677888888 5788887
No 34
>2ld7_A Histone deacetylase complex subunit SAP30; transcription; NMR {Mus musculus}
Probab=41.75 E-value=41 Score=22.74 Aligned_cols=33 Identities=3% Similarity=0.178 Sum_probs=24.2
Q ss_pred HHHHHHhhhcCCCCCCCCCccccchhHHhhhcCCCccCHHHHHHHHHhccCC
Q 044317 68 KLITKFIKLNNRENPGMKKDLLGEEKLKSLLSGKDRIGIPEIAKLLSGQFVK 119 (123)
Q Consensus 68 k~lW~YIK~n~LQDp~nKr~I~cDekLk~LF~g~d~i~~~~i~klL~~Hl~k 119 (123)
..||.|-+.++|+-|. +++-.+|...+..||..
T Consensus 30 ~tLrrY~r~y~L~~~~-------------------~~sK~qLa~aV~kHF~s 62 (94)
T 2ld7_A 30 NTLRRYKRHFKLPTRP-------------------GLNKAQLVEIVGCHFKS 62 (94)
T ss_dssp HHHHHHHHHTTCCCCS-------------------SCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCCC-------------------CCCHHHHHHHHHHHHHc
Confidence 4899999999997665 24455677777777754
No 35
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=41.67 E-value=7.1 Score=27.41 Aligned_cols=45 Identities=11% Similarity=0.048 Sum_probs=30.1
Q ss_pred CHHHHhhhCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCccccc-hhHHhh
Q 044317 49 TSELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKKDLLGE-EKLKSL 97 (123)
Q Consensus 49 S~eLa~fLG~~e~sR~evvk~lW~YIK~n~LQDp~nKr~I~cD-ekLk~L 97 (123)
-.+||+++|++ |..|. .+..-.++.++-+-+.+++++.| +.|+.+
T Consensus 181 ~~~lA~~lg~s---r~tvs-R~l~~l~~~g~I~~~~~~i~i~d~~~L~~l 226 (227)
T 3dkw_A 181 KQLVAGHLSIQ---PETFS-RIMHRLGDEGIIHLDGREISILDRERLECF 226 (227)
T ss_dssp THHHHHHTTSC---HHHHH-HHHHHHHHHTSEEESSSCEEESCSTTTSSC
T ss_pred HHHHHHHhCCC---HHHHH-HHHHHHHHCCcEEecCCEEEEeCHHHHhhc
Confidence 37999999984 33333 44445666777676778888888 455543
No 36
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=41.57 E-value=20 Score=24.86 Aligned_cols=46 Identities=11% Similarity=0.174 Sum_probs=31.4
Q ss_pred CHHHHhhhCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCccccc-hhHHhhh
Q 044317 49 TSELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKKDLLGE-EKLKSLL 98 (123)
Q Consensus 49 S~eLa~fLG~~e~sR~evvk~lW~YIK~n~LQDp~nKr~I~cD-ekLk~LF 98 (123)
-.+||+++|++ |.. +..+-.-.++.++-+-+.+++++.| +.|+.+-
T Consensus 172 ~~~lA~~lg~s---r~t-vsR~l~~L~~~g~I~~~~~~i~i~d~~~L~~~a 218 (220)
T 3dv8_A 172 HETIANHLGSH---REV-ITRMLRYFQVEGLVKLSRGKITILDSKRLETLQ 218 (220)
T ss_dssp HHHHHHHHTCC---HHH-HHHHHHHHHHTTSEEEETTEEEESCHHHHHHHH
T ss_pred HHHHHHHhCCC---HHH-HHHHHHHHHHCCCEEeCCCEEEEeCHHHHHHHh
Confidence 47899999985 333 3344455567777777778888888 5566553
No 37
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A*
Probab=40.85 E-value=21 Score=21.77 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHhhhcCCCCCCCCCccccchhHHhhhcCCCccCHHHHHHHHHhccC
Q 044317 62 PRSETAKLITKFIKLNNRENPGMKKDLLGEEKLKSLLSGKDRIGIPEIAKLLSGQFV 118 (123)
Q Consensus 62 sR~evvk~lW~YIK~n~LQDp~nKr~I~cDekLk~LF~g~d~i~~~~i~klL~~Hl~ 118 (123)
+|.++...|.+.|.+.==.+ ...|..|..|..-+ |-|++.+.+|.-.|...|-
T Consensus 2 ~~~~i~~~l~~ii~~~l~~~---~~~i~~d~~l~~dl-g~DSl~~vel~~~le~~fg 54 (81)
T 3gzm_A 2 SLKSTFDDIKKIISKQLSVE---EDKIQMNSNFTKDL-GADSLDLVELIMALEEKFN 54 (81)
T ss_dssp CHHHHHHHHHHHHHHHHTCC---GGGCCTTCBHHHHS-CCCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhCcC---HHHCCCCCcchhhc-CCCHHHHHHHHHHHHHHHC
Confidence 67888888888887752122 24688899987777 8999999999888887663
No 38
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=40.07 E-value=27 Score=20.96 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=30.6
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCccccchhHHhhhcC---CCccCHHHHHHHHHhccC
Q 044317 50 SELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKKDLLGEEKLKSLLSG---KDRIGIPEIAKLLSGQFV 118 (123)
Q Consensus 50 ~eLa~fLG~~e~sR~evvk~lW~YIK~n~LQDp~nKr~I~cDekLk~LF~g---~d~i~~~~i~klL~~Hl~ 118 (123)
.+++++||++.. -|+.|++. ++ |.-+. . | .-++...+|..+|..+..
T Consensus 6 ~e~a~~LgvS~~-------Tl~rw~~~-G~--P~~~~-----------~-g~~~~~~y~~~dv~~wl~~~~~ 55 (68)
T 1j9i_A 6 KQLADIFGASIR-------TIQNWQEQ-GM--PVLRG-----------G-GKGNEVLYDSAAVIKWYAERDA 55 (68)
T ss_dssp HHHHHHTTCCHH-------HHHHHTTT-TC--CCSSC-----------C-CSSSCCEEEHHHHHHHHTTTGG
T ss_pred HHHHHHHCcCHH-------HHHHHHHC-CC--CeEee-----------C-CCcceEEECHHHHHHHHHHCcc
Confidence 689999999766 78899986 44 54221 1 2 334666677777766543
No 39
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=39.52 E-value=5.3 Score=25.60 Aligned_cols=35 Identities=14% Similarity=0.043 Sum_probs=28.8
Q ss_pred CCCCCCCccccchhHHhhhcCCCccCHHHHHHHHHh
Q 044317 80 ENPGMKKDLLGEEKLKSLLSGKDRIGIPEIAKLLSG 115 (123)
Q Consensus 80 QDp~nKr~I~cDekLk~LF~g~d~i~~~~i~klL~~ 115 (123)
-||..+..-.+|+-...+| |-.+-.|..||++=+.
T Consensus 24 VD~~~lE~yLsdedF~~vF-gmsr~eF~~LP~WKq~ 58 (67)
T 2k6m_S 24 VDPLKLEIYLTDEDFEFAL-DMTRDEYNALPAWKQV 58 (67)
T ss_dssp SBTTBCGGGSCHHHHHHHT-SSCHHHHTTSCHHHHH
T ss_pred CCchHHHhhCCHHHHHHHH-CcCHHHHHHCcHHHHH
Confidence 4778888999999999999 8888888877776443
No 40
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A*
Probab=39.45 E-value=18 Score=23.42 Aligned_cols=56 Identities=16% Similarity=0.190 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCCCCCccccchhHHhhhcCCCccCHHHHHHHHHhccC
Q 044317 59 PEPPRSETAKLITKFIKLNNRENPGMKKDLLGEEKLKSLLSGKDRIGIPEIAKLLSGQFV 118 (123)
Q Consensus 59 ~e~sR~evvk~lW~YIK~n~LQDp~nKr~I~cDekLk~LF~g~d~i~~~~i~klL~~Hl~ 118 (123)
..+++.++...|.+.|.+.==.+ ...|..|..|..-+ |-|++.+-+|.-.|...|-
T Consensus 16 ~~~t~~~i~~~l~~iia~~l~~~---~~~i~~d~~l~~dL-GlDSL~~vel~~~lE~~fg 71 (97)
T 3ejb_A 16 RGSHMSTIEERVKKIIGEQLGVK---QEEVTNNASFVEDL-GADSLDTVELVMALEEEFD 71 (97)
T ss_dssp --CCCCCHHHHHHHHHHHHSCCC---TTTSCTTCBTTTTT-CCCTTHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHCcC---HHHCCCCCCchhhc-CCCHHHHHHHHHHHHHHHC
Confidence 35788889999999998753122 24688888887677 8999999999888887764
No 41
>3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma}
Probab=38.47 E-value=25 Score=23.31 Aligned_cols=53 Identities=11% Similarity=-0.011 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCCCCccccchhHH-----hhhcCCCccCHHHHHHHHHhccC
Q 044317 61 PPRSETAKLITKFIKLNNRENPGMKKDLLGEEKLK-----SLLSGKDRIGIPEIAKLLSGQFV 118 (123)
Q Consensus 61 ~sR~evvk~lW~YIK~n~LQDp~nKr~I~cDekLk-----~LF~g~d~i~~~~i~klL~~Hl~ 118 (123)
+++.+|...|.++|.+.- .+ ...|..|..|. .=+ |-|++.+.+|--.|..+|-
T Consensus 15 ~~~~~i~~~i~~il~e~l-~~---~~~i~~d~~l~~~~~~~dL-glDSL~~veli~~lE~~fg 72 (107)
T 3ce7_A 15 TDINAVTNYIVGMCQKFL-QK---GEKVTPSSKLEELRTREDR-LWDCLDTVEFVLDVEEIFD 72 (107)
T ss_dssp TCHHHHHHHHHHHHHTTB-CT---TCCCCTTSCGGGSBBTTSS-BCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHh-CC---ccccCCCCcccccCccccc-CCCHHHHHHHHHHHHHHHC
Confidence 689999999999998763 32 35688888886 446 7899999998888887763
No 42
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=37.63 E-value=24 Score=24.68 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=30.2
Q ss_pred CC-HHHHhhhCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCccccc-hhHHhh
Q 044317 48 ST-SELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKKDLLGE-EKLKSL 97 (123)
Q Consensus 48 LS-~eLa~fLG~~e~sR~evvk~lW~YIK~n~LQDp~nKr~I~cD-ekLk~L 97 (123)
+| .+||++||++. ..|...+ .-.++.++-+-+.+++++.| +.|+.+
T Consensus 178 ~t~~~lA~~lg~sr---~tvsR~l-~~l~~~g~I~~~~~~i~i~d~~~L~~~ 225 (227)
T 3d0s_A 178 LTQEEIAQLVGASR---ETVNKAL-ADFAHRGWIRLEGKSVLISDSERLARR 225 (227)
T ss_dssp CCHHHHHHHHTSCH---HHHHHHH-HHHHHTTSEEEETTEEEESCHHHHHHH
T ss_pred CCHHHHHHHhCCcH---HHHHHHH-HHHHHCCCEEecCCEEEEcCHHHHHHh
Confidence 44 56999999854 3333333 33566777666778888888 466655
No 43
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii}
Probab=37.43 E-value=23 Score=21.57 Aligned_cols=54 Identities=9% Similarity=0.086 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCCCCccccchhHHhhhcCCCccCHHHHHHHHHhccC
Q 044317 61 PPRSETAKLITKFIKLNNRENPGMKKDLLGEEKLKSLLSGKDRIGIPEIAKLLSGQFV 118 (123)
Q Consensus 61 ~sR~evvk~lW~YIK~n~LQDp~nKr~I~cDekLk~LF~g~d~i~~~~i~klL~~Hl~ 118 (123)
.++.++...|.+.|.+.-=.+ ...|..|..|..-+ |-|++.+.+|...|..+|-
T Consensus 3 ~~~~~i~~~l~~ii~~~l~~~---~~~i~~d~~l~~dl-G~DSl~~vel~~~le~~fg 56 (82)
T 2qnw_A 3 SDDRPLLERVKDVVADQLGVD---RARINPESNFIKDL-DADSLDSVELVMAFEEKFG 56 (82)
T ss_dssp CCSHHHHHHHHHHHHHHHCCC---GGGCCTTCBHHHHS-CCCHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCCC---HhhCCCccchhhcc-CCcHHHHHHHHHHHHHHHC
Confidence 467788888888887742122 24688899987667 8999999999888888763
No 44
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=37.20 E-value=39 Score=18.37 Aligned_cols=32 Identities=9% Similarity=-0.009 Sum_probs=20.9
Q ss_pred CCCCHHHHhhhC----CCCCCHHHHHH-HHHHHhhhc
Q 044317 46 PSSTSELGRFLN----IPEPPRSETAK-LITKFIKLN 77 (123)
Q Consensus 46 ~~LS~eLa~fLG----~~e~sR~evvk-~lW~YIK~n 77 (123)
..|+++|.+-|. ....||++++. +|-.|+..+
T Consensus 7 v~l~~~l~~~Ld~~a~~~g~srS~~ir~ai~~~l~~~ 43 (45)
T 2cpg_A 7 ITLSESVLENLEKMAREMGLSKSAMISVALENYKKGQ 43 (45)
T ss_dssp EEEEHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHCC
T ss_pred EecCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 345666655553 23469999997 677788754
No 45
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=36.29 E-value=7.7 Score=24.85 Aligned_cols=35 Identities=20% Similarity=0.399 Sum_probs=29.3
Q ss_pred CCCCCCCccccchhHHhhhcCCCccCHHHHHHHHHh
Q 044317 80 ENPGMKKDLLGEEKLKSLLSGKDRIGIPEIAKLLSG 115 (123)
Q Consensus 80 QDp~nKr~I~cDekLk~LF~g~d~i~~~~i~klL~~ 115 (123)
-||..+..-++|+-...+| |-.+-.|..|+++=+.
T Consensus 24 VD~~~lE~yLsdedF~~vF-gms~~eF~~LP~WKq~ 58 (67)
T 1yu8_X 24 VDPSAKENHLSDEDFKAVF-GMTRSAFANLPLWKQQ 58 (67)
T ss_dssp CCTTCGGGGSCHHHHHHHH-SSCHHHHHTSCHHHHH
T ss_pred cChHHHHhcCCHHHHHHHH-CcCHHHHHHChHHHHH
Confidence 5888888999999999999 8888888888776443
No 46
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=36.15 E-value=6.4 Score=25.21 Aligned_cols=35 Identities=9% Similarity=0.018 Sum_probs=28.7
Q ss_pred CCCCCCCccccchhHHhhhcCCCccCHHHHHHHHHh
Q 044317 80 ENPGMKKDLLGEEKLKSLLSGKDRIGIPEIAKLLSG 115 (123)
Q Consensus 80 QDp~nKr~I~cDekLk~LF~g~d~i~~~~i~klL~~ 115 (123)
-||..+..-++|+-...+| |-.+-.|..|+++=+.
T Consensus 25 VD~~~lE~yLsdedF~~vF-gmsr~eF~~LP~WKq~ 59 (68)
T 1qzp_A 25 VDRMRLERHLSAEDFSRVF-AMSPEEFGKLALWKRN 59 (68)
T ss_dssp CCGGGCGGGBCHHHHHHHS-SSCHHHHHHSCHHHHH
T ss_pred CCchHHHhhCCHHHHHHHH-CcCHHHHHHChHHHHH
Confidence 4777788899999999999 8888888888776443
No 47
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=35.63 E-value=11 Score=27.26 Aligned_cols=45 Identities=9% Similarity=0.016 Sum_probs=26.7
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCccccc-hhHHhhh
Q 044317 50 SELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKKDLLGE-EKLKSLL 98 (123)
Q Consensus 50 ~eLa~fLG~~e~sR~evvk~lW~YIK~n~LQDp~nKr~I~cD-ekLk~LF 98 (123)
.+||++||++ |..|. .+..-.++.++-+-+.+++++.| +.|++.|
T Consensus 197 ~~lA~~lG~s---r~tvs-R~l~~L~~~GlI~~~~~~i~I~d~~~L~~~~ 242 (243)
T 3la7_A 197 QAIAEAIGST---RVTVT-RLLGDLREKKMISIHKKKITVHKPVTLSRQF 242 (243)
T ss_dssp HHHHHHHTCC---HHHHH-HHHHHHHHTTSEEEETTEEEECC--------
T ss_pred HHHHHHHCCc---HHHHH-HHHHHHHHCCCEEEcCCEEEECCHHHHHhhh
Confidence 7999999964 44443 34445567777777778888888 5566554
No 48
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=33.65 E-value=8.1 Score=26.06 Aligned_cols=35 Identities=11% Similarity=0.095 Sum_probs=29.1
Q ss_pred CCCCCCCccccchhHHhhhcCCCccCHHHHHHHHHh
Q 044317 80 ENPGMKKDLLGEEKLKSLLSGKDRIGIPEIAKLLSG 115 (123)
Q Consensus 80 QDp~nKr~I~cDekLk~LF~g~d~i~~~~i~klL~~ 115 (123)
-||..+..-+.|+-...+| |-.+-.|..||++=+.
T Consensus 39 VD~tklE~YLSdedF~~vF-gMsr~eF~~LP~WKq~ 73 (88)
T 1ujs_A 39 VDRTRLERHLSQEEFYQVF-GMTISEFDRLALWKRN 73 (88)
T ss_dssp CCTTTGGGGSCTTHHHHHH-SSCHHHHTTSCHHHHH
T ss_pred cCHHHHHhcCCHHHHHHHH-CcCHHHHHHChHHHHH
Confidence 5788888999999999999 8888888888776543
No 49
>2hza_A Nickel-responsive regulator; nickel-binding, ribbon-helix-helix, transcription factor, ME binding protein; HET: 3CM; 2.10A {Escherichia coli} SCOP: a.43.1.3 d.58.18.4 PDB: 1q5v_A* 2hzv_A 3od2_A*
Probab=33.55 E-value=25 Score=24.39 Aligned_cols=41 Identities=15% Similarity=0.180 Sum_probs=29.8
Q ss_pred CCCCHHHHhhhCC----C-CCCHHHHHH-HHHHHhhhcCCCCCCCCC
Q 044317 46 PSSTSELGRFLNI----P-EPPRSETAK-LITKFIKLNNRENPGMKK 86 (123)
Q Consensus 46 ~~LS~eLa~fLG~----~-e~sR~evvk-~lW~YIK~n~LQDp~nKr 86 (123)
..|+++|.+.+.. . ..||++++. ++-.|+.++..++++..+
T Consensus 6 VsLp~~ll~~lD~~v~~~~y~sRSe~Ir~air~~l~~~~~~~~~~~~ 52 (133)
T 2hza_A 6 ITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQEATQQHGTQG 52 (133)
T ss_dssp EEECHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHTCTTCEE
T ss_pred EEECHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhhccCCce
Confidence 4567888888752 3 389999998 567799998776655443
No 50
>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A*
Probab=31.17 E-value=9.7 Score=29.72 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=22.0
Q ss_pred CHHHHhhhCCCCCCHHHHHHHHHHHhhhcCCCC
Q 044317 49 TSELGRFLNIPEPPRSETAKLITKFIKLNNREN 81 (123)
Q Consensus 49 S~eLa~fLG~~e~sR~evvk~lW~YIK~n~LQD 81 (123)
|+++.+.+.....-|.-|-..+++||++|+|..
T Consensus 223 ST~IR~~l~~g~si~~lvP~~V~~YI~~~~LY~ 255 (279)
T 1kqn_A 223 STKIRRALRRGQSIRYLVPDLVQEYIEKHNLYS 255 (279)
T ss_dssp HHHHHHHHHTTCCCBTTBCHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHcCCChhhcCCHHHHHHHHHcCCcC
Confidence 556666663323334445578999999999984
No 51
>1nup_A FKSG76; NAD biosynthesis, mitochondria, pyridine adenylyltransferase catalysis, transferase; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A*
Probab=29.77 E-value=13 Score=28.31 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=22.2
Q ss_pred CHHHHhhhCCCCCCHHHHHHHHHHHhhhcCCCCCC
Q 044317 49 TSELGRFLNIPEPPRSETAKLITKFIKLNNRENPG 83 (123)
Q Consensus 49 S~eLa~fLG~~e~sR~evvk~lW~YIK~n~LQDp~ 83 (123)
|+++.+.+.....-|.-|-..+++||++|+|....
T Consensus 202 ST~IR~~~~~g~~i~~lvP~~V~~yI~~~~LY~~~ 236 (252)
T 1nup_A 202 ATYIRRALGQGQSVKYLIPDAVITYIKDHGLYTKG 236 (252)
T ss_dssp HHHHHHHHHTTCCCBTTBCHHHHHHHHHTTCSCC-
T ss_pred HHHHHHHHHcCCCchhcCCHHHHHHHHHcCCcCCC
Confidence 55556665332223344556899999999998643
No 52
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=29.41 E-value=11 Score=26.48 Aligned_cols=40 Identities=13% Similarity=0.113 Sum_probs=0.0
Q ss_pred CHHHHhhhCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCccccch
Q 044317 49 TSELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKKDLLGEE 92 (123)
Q Consensus 49 S~eLa~fLG~~e~sR~evvk~lW~YIK~n~LQDp~nKr~I~cDe 92 (123)
-.+||++||++..+=+.+++. .++.++-+-+.+++++.|.
T Consensus 167 ~~~lA~~lg~sr~tvsR~l~~----L~~~G~I~~~~~~i~I~d~ 206 (213)
T 1o5l_A 167 LEELSRLFGCARPALSRVFQE----LEREGYIEKHGRRIKVLKN 206 (213)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHhCCCHHHHHHHHHH----HHHCCeEEEcCCEEEEech
Confidence 368999999866544444444 3566666666677777773
No 53
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus}
Probab=29.33 E-value=7.1 Score=28.47 Aligned_cols=19 Identities=5% Similarity=0.037 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhhhcCCCC
Q 044317 63 RSETAKLITKFIKLNNREN 81 (123)
Q Consensus 63 R~evvk~lW~YIK~n~LQD 81 (123)
+.-|-..+++||++|+|..
T Consensus 153 ~~lvp~~V~~yI~~~~LY~ 171 (177)
T 3h05_A 153 STYTTPTVSELLLNEGLYR 171 (177)
T ss_dssp TTTSCHHHHHHHHC-----
T ss_pred hHhCCHHHHHHHHHcCCCC
Confidence 3335567899999999974
No 54
>1fh1_A NODF, nodulation protein F; ROOT nodulation factor, protein backbone fold, lipid binding protein; NMR {Rhizobium leguminosarum} SCOP: i.11.1.1
Probab=26.42 E-value=36 Score=21.48 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=19.1
Q ss_pred HHHHHHHHhhhcCCCCCC-----CCCccccchhHHhhhcCCCccCHHHHHHHHHhccC
Q 044317 66 TAKLITKFIKLNNRENPG-----MKKDLLGEEKLKSLLSGKDRIGIPEIAKLLSGQFV 118 (123)
Q Consensus 66 vvk~lW~YIK~n~LQDp~-----nKr~I~cDekLk~LF~g~d~i~~~~i~klL~~Hl~ 118 (123)
+...|.++|.+.--.++. +-..|..|..| .=+ |-|++.+.+|--.|..+|-
T Consensus 5 i~~~i~~ii~~~~~~~~~~~~~~~~~~i~~d~~l-~dl-g~DSl~~vel~~~lE~~fg 60 (92)
T 1fh1_A 5 LTLEIISAINKLVKAENGERTSVALGEITTDTEL-TSL-GIDSLGLADVLWDLEQLYG 60 (92)
T ss_dssp CHHHHHHHHHHHC------------------------------CTTTTHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHhccccccCCCHhhCCCCCCH-hhc-CCChHHHHHHHHHHHHHhC
Confidence 345566666665443332 33468889998 557 8899999999988888774
No 55
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A*
Probab=26.29 E-value=12 Score=26.41 Aligned_cols=32 Identities=13% Similarity=0.020 Sum_probs=21.0
Q ss_pred CHHHHhhhCCCCCCHHHHHHHHHHHhhhcCCC
Q 044317 49 TSELGRFLNIPEPPRSETAKLITKFIKLNNRE 80 (123)
Q Consensus 49 S~eLa~fLG~~e~sR~evvk~lW~YIK~n~LQ 80 (123)
|+.+.+.+-....-+.-|-..+++||++|+|.
T Consensus 156 ST~IR~~l~~g~~~~~lvP~~V~~yI~~~~lY 187 (189)
T 2qtr_A 156 SSLLRERYKEKKTCKYLLPEKVQVYIERNGLY 187 (189)
T ss_dssp HHHHHHHHHTTCCCTTTSCHHHHHHHHHTTGG
T ss_pred HHHHHHHHHcCCCchhcCCHHHHHHHHHcCCc
Confidence 56666666322223334667899999999986
No 56
>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*
Probab=25.83 E-value=15 Score=26.79 Aligned_cols=32 Identities=9% Similarity=0.023 Sum_probs=20.7
Q ss_pred CHHHHhhhCCCCCCHHHHHHHHHHHhhhcCCC
Q 044317 49 TSELGRFLNIPEPPRSETAKLITKFIKLNNRE 80 (123)
Q Consensus 49 S~eLa~fLG~~e~sR~evvk~lW~YIK~n~LQ 80 (123)
|+...+.+.....-+.-|-..+++||++|+|.
T Consensus 181 ST~IR~~i~~g~~i~~lvP~~V~~yI~~~~LY 212 (213)
T 1k4m_A 181 ATIIRERLQNGESCEDLLPEPVLTYINQQGLY 212 (213)
T ss_dssp HHHHHHHHHTTCCCTTTSCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCCchhcCCHHHHHHHHHcCCC
Confidence 55555555322223444667899999999986
No 57
>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1
Probab=24.90 E-value=1.3e+02 Score=18.90 Aligned_cols=54 Identities=9% Similarity=0.043 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCCCccccchhHHhhhcCCCccCHHHHHHHHHhccC
Q 044317 60 EPPRSETAKLITKFIKLNNRENPGMKKDLLGEEKLKSLLSGKDRIGIPEIAKLLSGQFV 118 (123)
Q Consensus 60 e~sR~evvk~lW~YIK~n~LQDp~nKr~I~cDekLk~LF~g~d~i~~~~i~klL~~Hl~ 118 (123)
+++..++...|-+++.... +.+-..|..|..|. -+ |-|++...+|...|..+|-
T Consensus 3 ~~t~~~l~~ii~~~l~~~~---~~~~~~i~~d~~~~-dl-G~DSL~~vel~~~le~~fg 56 (95)
T 1nq4_A 3 LLTLSDLLTLLRECAGEEE---SIDLGGDVEDVAFD-AL-GYDSLALLNTVGRIERDYG 56 (95)
T ss_dssp CCCHHHHHHHHHHHHTCSS---TTCSCSCCSSSCHH-HH-TCCSHHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHcccc---ccccccCCCCCChh-hh-CCCHHHHHHHHHHHHHHHC
Confidence 4667776666666665332 22223588888884 56 8999999999999988773
No 58
>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A*
Probab=24.15 E-value=15 Score=26.25 Aligned_cols=32 Identities=9% Similarity=0.062 Sum_probs=20.7
Q ss_pred CHHHHhhhCCCCCCHHHHHHHHHHHhhhcCCC
Q 044317 49 TSELGRFLNIPEPPRSETAKLITKFIKLNNRE 80 (123)
Q Consensus 49 S~eLa~fLG~~e~sR~evvk~lW~YIK~n~LQ 80 (123)
|+++.+.+.....-+.-|-..+++||++|+|.
T Consensus 156 ST~IR~~i~~g~~~~~lvP~~V~~yI~~~~LY 187 (189)
T 2h29_A 156 STMIRQRVSEGKSIQVLVPKSVENYIKGEGLY 187 (189)
T ss_dssp HHHHHHHHHTTCCCBTTBCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCChhhcCCHHHHHHHHHhCCc
Confidence 55556565322223344667899999999997
No 59
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=24.01 E-value=22 Score=25.25 Aligned_cols=40 Identities=20% Similarity=0.163 Sum_probs=27.0
Q ss_pred CHHHHhhhCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCccccch
Q 044317 49 TSELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKKDLLGEE 92 (123)
Q Consensus 49 S~eLa~fLG~~e~sR~evvk~lW~YIK~n~LQDp~nKr~I~cDe 92 (123)
-.+||++||++ |..|.. +..-.++.++-.-+.+++++.|.
T Consensus 189 ~~~lA~~lG~s---r~tvsR-~l~~l~~~glI~~~~~~i~I~d~ 228 (232)
T 1zyb_A 189 MDDLARCLDDT---RLNISK-TLNELQDNGLIELHRKEILIPDA 228 (232)
T ss_dssp HHHHHHHHTSC---HHHHHH-HHHHHHHTTSCEEETTEEEESCG
T ss_pred HHHHHHHhCCC---hhHHHH-HHHHHHHCCCEEecCCEEEEeCh
Confidence 37899999984 433333 33334677777767778888884
No 60
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=23.83 E-value=26 Score=28.20 Aligned_cols=11 Identities=27% Similarity=0.317 Sum_probs=10.3
Q ss_pred HHHHHhhhcCC
Q 044317 69 LITKFIKLNNR 79 (123)
Q Consensus 69 ~lW~YIK~n~L 79 (123)
.||.||+.|+|
T Consensus 204 DVW~YI~~~~L 214 (308)
T 3fwk_A 204 NIWSFLLYSNE 214 (308)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHcCC
Confidence 68999999998
No 61
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A*
Probab=23.68 E-value=14 Score=26.49 Aligned_cols=33 Identities=9% Similarity=0.160 Sum_probs=20.6
Q ss_pred CHHHHhhhCCCCCCHHHHHHHHHHHhhhcCCCC
Q 044317 49 TSELGRFLNIPEPPRSETAKLITKFIKLNNREN 81 (123)
Q Consensus 49 S~eLa~fLG~~e~sR~evvk~lW~YIK~n~LQD 81 (123)
|+.+.+.+-....-+.-|-..+++||++|+|.-
T Consensus 161 ST~IR~~i~~g~~~~~lvP~~V~~yI~~~~LY~ 193 (194)
T 1kam_A 161 STMIRERFKSKKPTDYLIPDKVKKYVEENGLYE 193 (194)
T ss_dssp HHHHHHHHHHTCCCTTTSCHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCchhhCCHHHHHHHHHcCCcc
Confidence 555565652111223345678999999999973
No 62
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=23.53 E-value=36 Score=21.42 Aligned_cols=23 Identities=0% Similarity=0.094 Sum_probs=18.2
Q ss_pred CHHHHhhhCCCCCCHHHHHHHHHHHhhhcC
Q 044317 49 TSELGRFLNIPEPPRSETAKLITKFIKLNN 78 (123)
Q Consensus 49 S~eLa~fLG~~e~sR~evvk~lW~YIK~n~ 78 (123)
-.+||+.||++.. .||++|+.+.
T Consensus 13 ~~~lA~~lGVs~~-------aVs~W~~g~~ 35 (71)
T 2hin_A 13 VEKAAVGVGVTPG-------AVYQWLQAGE 35 (71)
T ss_dssp HHHHHHHHTSCHH-------HHHHHHHHTS
T ss_pred HHHHHHHHCCCHH-------HHHHHHhCCC
Confidence 3689999998876 7889987644
No 63
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=22.79 E-value=36 Score=22.36 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCCCCccccchhHHhhhcCCCccCHHHHHHHHHhccC
Q 044317 61 PPRSETAKLITKFIKLNNRENPGMKKDLLGEEKLKSLLSGKDRIGIPEIAKLLSGQFV 118 (123)
Q Consensus 61 ~sR~evvk~lW~YIK~n~LQDp~nKr~I~cDekLk~LF~g~d~i~~~~i~klL~~Hl~ 118 (123)
+++-++...|++.|.+.= .- +...|..|..|..-+ |-|++.+-+|.-.|...|-
T Consensus 22 m~~mei~~~l~~iiae~l-~~--~~~~I~~d~~l~~dL-GlDSL~~veLi~~lE~~fg 75 (101)
T 4dxe_H 22 SNAMENFDKVKDIIVDRL-GV--DADKVTEDASFKDDL-GADSLDIAELVMELEDEFG 75 (101)
T ss_dssp --CTTHHHHHHHHHHHTT-CC--CGGGCCTTCBTTTTS-CCCHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHHH-Cc--ChhhCCCCCcchhhc-CCCcHHHHHHHHHHHHHHC
Confidence 444578888888888763 22 234688898987777 8999999999888887663
No 64
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=21.75 E-value=1.2e+02 Score=22.63 Aligned_cols=36 Identities=3% Similarity=-0.215 Sum_probs=29.3
Q ss_pred HHhhhCCCC-CCHHHHHHHHHHHhhhcCCCCCCCCCcc
Q 044317 52 LGRFLNIPE-PPRSETAKLITKFIKLNNRENPGMKKDL 88 (123)
Q Consensus 52 La~fLG~~e-~sR~evvk~lW~YIK~n~LQDp~nKr~I 88 (123)
|.+ ||-.. .+=.+.+..+++|++++++.+|.+.-.|
T Consensus 291 l~~-lG~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 327 (330)
T 2pzm_A 291 ETE-FGWKAKVDFKDTITGQLAWYDKYGVTDIFSHLSA 327 (330)
T ss_dssp HHH-HCCCCCCCHHHHHHHHHHHHHHHCSCSCCCSSCC
T ss_pred HHH-cCCcccCCHHHHHHHHHHHHHhhCcccccCcCCC
Confidence 356 89654 6888999999999999999999886544
No 65
>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A*
Probab=21.40 E-value=20 Score=27.16 Aligned_cols=33 Identities=9% Similarity=0.166 Sum_probs=21.0
Q ss_pred CHHHHhhhCCCCCCHHHHHHHHHHHhhhcCCCC
Q 044317 49 TSELGRFLNIPEPPRSETAKLITKFIKLNNREN 81 (123)
Q Consensus 49 S~eLa~fLG~~e~sR~evvk~lW~YIK~n~LQD 81 (123)
|++..+.+.....-+.-|-..+++||++|+|.-
T Consensus 199 ST~IR~~i~~g~~i~~lVP~~V~~yI~~~~LY~ 231 (242)
T 1yum_A 199 ATQIRALLGAGRSVRFLVPDAVLNYIEAHHLYR 231 (242)
T ss_dssp HHHHHHHHHTTCCCBTTBCHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHcCCChhHcCCHHHHHHHHHhCCcC
Confidence 445555552222234446678999999999985
No 66
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=21.17 E-value=37 Score=25.65 Aligned_cols=13 Identities=23% Similarity=0.457 Sum_probs=11.0
Q ss_pred HHHHHHhhhcCCC
Q 044317 68 KLITKFIKLNNRE 80 (123)
Q Consensus 68 k~lW~YIK~n~LQ 80 (123)
..||+||++|+|-
T Consensus 193 ~dV~~Yi~~~~lp 205 (261)
T 2oq2_A 193 EQVKQYIDANNVP 205 (261)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCC
Confidence 4689999999983
No 67
>2l3v_A ACP, acyl carrier protein; structural genomi seattle structural genomics center for infectious disease, lipid binding protein; NMR {Brucella melitensis}
Probab=21.11 E-value=41 Score=19.96 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCccccchhHHhhhcCCCccCHHHHHHHHHhcc
Q 044317 65 ETAKLITKFIKLNNRENPGMKKDLLGEEKLKSLLSGKDRIGIPEIAKLLSGQF 117 (123)
Q Consensus 65 evvk~lW~YIK~n~LQDp~nKr~I~cDekLk~LF~g~d~i~~~~i~klL~~Hl 117 (123)
++...|.++|.+.- .-| ...|..|..|..-+ |-|++.+-++...|..+|
T Consensus 4 ~i~~~l~~~~~~~l-~~~--~~~i~~~~~l~~~l-G~DSl~~~~l~~~le~~f 52 (79)
T 2l3v_A 4 DTAERVKKIVVEHL-GVD--ADKVTEGASFIDDL-GADSLDTVELVMAFEEEF 52 (79)
T ss_dssp HHHHHHHHHHHHHT-CCC--STTCCTTCCHHHHT-CCCSSSSSSTTTTHHHHT
T ss_pred HHHHHHHHHHHHHh-CCC--HhhCCCCCcccccc-CCCHHHHHHHHHHHHHHH
Confidence 56667777776652 222 23577888885567 788888888777777766
No 68
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=20.99 E-value=35 Score=20.46 Aligned_cols=48 Identities=10% Similarity=0.042 Sum_probs=30.3
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCccccchhHHhhhcCCCccCHHHHHHHHHhcc
Q 044317 50 SELGRFLNIPEPPRSETAKLITKFIKLNNRENPGMKKDLLGEEKLKSLLSGKDRIGIPEIAKLLSGQF 117 (123)
Q Consensus 50 ~eLa~fLG~~e~sR~evvk~lW~YIK~n~LQDp~nKr~I~cDekLk~LF~g~d~i~~~~i~klL~~Hl 117 (123)
++++++||++.. .||.+|++..+--|- + +++.-.+...+|..+|..+.
T Consensus 14 ~eva~~lgvsrs-------tiy~~~~~g~fP~pi--k-----------lG~~~~w~~~ev~~Wl~~~~ 61 (66)
T 1z4h_A 14 KFIMADTGFGKT-------FIYDRIKSGDLPKAK--V-----------IHGRARWLYRDHCEFKNKLL 61 (66)
T ss_dssp HHHHHHHSSCHH-------HHHHHHHHHHCCCSE--E-----------SSSCEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHH-------HHHHHHHCCCCCCCE--E-----------eCCCeEEeHHHHHHHHHHHH
Confidence 789999997654 689999987663321 0 11223455667777776554
No 69
>1yfn_A Stringent starvation protein B; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli} SCOP: b.136.1.1 PDB: 1ox9_A 1ox8_A
Probab=20.29 E-value=79 Score=22.24 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=18.8
Q ss_pred CCCHHHHHHHHHHHhhhcCC
Q 044317 60 EPPRSETAKLITKFIKLNNR 79 (123)
Q Consensus 60 e~sR~evvk~lW~YIK~n~L 79 (123)
..+|+-+++++++||-+|+|
T Consensus 7 ~s~rPYLiRA~yeWi~DN~~ 26 (118)
T 1yfn_A 7 TPRRPYLLRAFYEWLLDNQL 26 (118)
T ss_dssp CCSHHHHHHHHHHHHHHTTC
T ss_pred CCCccHHHHHHHHHHHcCCC
Confidence 57899999999999999998
No 70
>1ou8_A Stringent starvation protein B homolog; peptide-binding pocket, protein-peptide complex, homodimer, transport protein; 1.60A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1zsz_A 1twb_A 1zsz_B
Probab=20.29 E-value=70 Score=22.29 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=18.8
Q ss_pred CCCHHHHHHHHHHHhhhcCC
Q 044317 60 EPPRSETAKLITKFIKLNNR 79 (123)
Q Consensus 60 e~sR~evvk~lW~YIK~n~L 79 (123)
..+|+-++++++++|-+|+|
T Consensus 6 ~s~rPYLiRA~yeWi~DN~~ 25 (111)
T 1ou8_A 6 SPKRPYLLRAYYDWLVDNSF 25 (111)
T ss_dssp CCSHHHHHHHHHHHHHHTTC
T ss_pred CCCccHHHHHHHHHHHhCCC
Confidence 57899999999999999998
Done!