BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044318
(195 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana
GN=BBR PE=2 SV=1
Length = 340
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/99 (50%), Positives = 72/99 (72%), Gaps = 2/99 (2%)
Query: 84 ELDVDELTYEELIALGEFIGQEKRGLSLNQISTCLHACKSPPADGTKSGIDRCVICQVEY 143
E+D DEL+YEEL+ALG+ +G E RGLS + I++ L + + D + CVIC+++Y
Sbjct: 237 EMDPDELSYEELLALGDIVGTESRGLSADTIAS-LPSKRYKEGDNQNGTNESCVICRLDY 295
Query: 144 EEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEAS 182
E+ E ++ LLPC+H YHSECI+NWL+I K+CP+CS E S
Sbjct: 296 EDDEDLI-LLPCKHSYHSECINNWLKINKVCPVCSAEVS 333
>sp|Q8L649|BB_ARATH E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1
SV=1
Length = 248
Score = 97.4 bits (241), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 64/99 (64%), Gaps = 2/99 (2%)
Query: 84 ELDVDELTYEELIALGEFIGQEKRGLSLNQISTC-LHACKSPPADGTKSGIDRCVICQVE 142
++D D +TYEEL+ LGE +G E RGLS I T K K +RCVICQ++
Sbjct: 144 DIDPDTMTYEELVELGEAVGTESRGLSQELIETLPTKKYKFGSIFSRKRAGERCVICQLK 203
Query: 143 YEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEA 181
Y+ GE + L PC+H+YHSECIS WL I K+CP+C++E
Sbjct: 204 YKIGERQMNL-PCKHVYHSECISKWLSINKVCPVCNSEV 241
>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1
Length = 432
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 7/110 (6%)
Query: 77 MDDDDELELDVDEL---TYEELIALGEFIGQEK-RGLSLNQISTCLHACKSPPADGTKSG 132
M L+LDVD++ YE L+ L E +G K RGL+ I +P D +S
Sbjct: 319 MGPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNP--DSHQSE 376
Query: 133 IDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEAS 182
CV+C ++E ++ +LPC H +H++C+ WL+ + CPIC +AS
Sbjct: 377 QTLCVVCFSDFE-ARQLLRVLPCNHEFHTKCVDKWLKANRTCPICRADAS 425
>sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1
Length = 350
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 59/104 (56%), Gaps = 7/104 (6%)
Query: 83 LELDVDEL---TYEELIALGEFIGQEK-RGLSLNQISTCLHACKSPPADGTKSGIDRCVI 138
L+LDVD++ YE L+ L E +G K RGL+ I +P D +S CV+
Sbjct: 243 LDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNP--DSHQSEQTLCVV 300
Query: 139 CQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEAS 182
C ++E + ++ +LPC H +H++C+ WL+ + CPIC +AS
Sbjct: 301 CFSDFEVRQ-LLRVLPCNHEFHAKCVDKWLKANRTCPICRADAS 343
>sp|Q5R476|RN111_PONAB E3 ubiquitin-protein ligase Arkadia OS=Pongo abelii GN=RNF111 PE=2
SV=1
Length = 986
Score = 61.6 bits (148), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/99 (36%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 92 YEELIALGEFIGQEKRGLSLNQISTC----------LHACKSPPADGTKSGIDRCVICQV 141
+EELI L E +G RG S I C LH + + ++C IC
Sbjct: 880 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKRKLHCKQDGEEGTEEDTEEKCTICLS 939
Query: 142 EYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTE 180
EEGE V LPC HL+H C+ WL K CPIC +
Sbjct: 940 ILEEGED-VRRLPCMHLFHQVCVDQWLITNKKCPICRVD 977
>sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1
Length = 407
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 59/104 (56%), Gaps = 7/104 (6%)
Query: 83 LELDVDEL---TYEELIALGEFIGQEK-RGLSLNQISTCLHACKSPPADGTKSGIDRCVI 138
L+LDVD++ YE L+ L E +G K RGL+ I +P D +S CV+
Sbjct: 300 LDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNP--DSHQSEQTLCVV 357
Query: 139 CQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEAS 182
C ++E + ++ +LPC H +H++C+ WL+ + CPIC +AS
Sbjct: 358 CFSDFEVRQ-LLRVLPCNHEFHAKCVDKWLKANRTCPICRADAS 400
>sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4
Length = 515
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 7/104 (6%)
Query: 83 LELDVDE---LTYEELIALGEFIGQEK-RGLSLNQISTCLHACKSPPADGTKSGIDRCVI 138
ELDV++ YE L+ L E +G+ K RGL+ I +P + +S CV+
Sbjct: 408 FELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNP--NNHQSEQTLCVV 465
Query: 139 CQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEAS 182
C ++E + ++ +LPC H +H++C+ WL+ + CPIC +AS
Sbjct: 466 CMCDFESRQ-LLRVLPCNHEFHAKCVDKWLKANRTCPICRADAS 508
>sp|Q08CG8|RNF44_DANRE RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1
Length = 448
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 83 LELDVDEL---TYEELIALGEFIGQEK-RGLS---LNQISTCLHACKSPPADGTKSGIDR 135
L+LDVD++ YE L+ L E +G+ K RGL+ + Q+ + + +S
Sbjct: 341 LDLDVDDVEMENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNL-----ENHQSEQTL 395
Query: 136 CVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEAS 182
CV+C ++E ++ +LPC H +H++C+ WL+ + CPIC +AS
Sbjct: 396 CVVCFSDFE-SRQLLRVLPCNHEFHAKCVDKWLKTNRTCPICRADAS 441
>sp|Q90ZT7|R111A_XENLA E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis
GN=rnf111-a PE=2 SV=1
Length = 923
Score = 58.9 bits (141), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 46/107 (42%), Gaps = 19/107 (17%)
Query: 92 YEELIALGEFIGQEKRGLSLNQISTC------------------LHACKSPPADGTKSGI 133
+EELI L E +G RG S I C LH+ + +
Sbjct: 809 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEAPEEDTE 868
Query: 134 DRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTE 180
++C IC EEGE V LPC HL+H C+ WL K CPIC +
Sbjct: 869 EKCTICLSILEEGED-VRRLPCMHLFHQVCVDQWLITNKKCPICRVD 914
>sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia OS=Xenopus tropicalis GN=rnf111
PE=2 SV=1
Length = 954
Score = 58.9 bits (141), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 46/107 (42%), Gaps = 19/107 (17%)
Query: 92 YEELIALGEFIGQEKRGLSLNQISTC------------------LHACKSPPADGTKSGI 133
+EELI L E +G RG S I C LH+ + +
Sbjct: 840 FEELIHLEERLGNVNRGASQGTIERCTYPHKYEKVSTDWFSQRKLHSKQDGEEATEEDTE 899
Query: 134 DRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTE 180
++C IC EEGE V LPC HL+H C+ WL K CPIC +
Sbjct: 900 EKCTICLSILEEGED-VRRLPCMHLFHQVCVDQWLITNKKCPICRVD 945
>sp|Q66J97|R111C_XENLA E3 ubiquitin-protein ligase arkadia-C OS=Xenopus laevis GN=rnf111-c
PE=2 SV=1
Length = 967
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 46/107 (42%), Gaps = 19/107 (17%)
Query: 92 YEELIALGEFIGQEKRGLSLNQISTC------------------LHACKSPPADGTKSGI 133
+EELI L E +G RG S I C LH+ + +
Sbjct: 853 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEAPEEDTE 912
Query: 134 DRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTE 180
++C IC EEGE V LPC HL+H C+ WL K CPIC +
Sbjct: 913 EKCTICLSILEEGED-VRRLPCMHLFHQVCVDQWLITNKKCPICRVD 958
>sp|Q99ML9|RN111_MOUSE E3 ubiquitin-protein ligase Arkadia OS=Mus musculus GN=Rnf111 PE=1
SV=1
Length = 989
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 45/107 (42%), Gaps = 19/107 (17%)
Query: 92 YEELIALGEFIGQEKRGLSLNQISTC------------------LHACKSPPADGTKSGI 133
+EELI L E +G RG S I C LH + +
Sbjct: 875 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVTTDWFSQRKLHCKQDGEEGTEEDTE 934
Query: 134 DRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTE 180
++C IC EEGE V LPC HL+H C+ WL K CPIC +
Sbjct: 935 EKCTICLSILEEGED-VRRLPCMHLFHQVCVDQWLITNKKCPICRVD 980
>sp|Q6ZNA4|RN111_HUMAN E3 ubiquitin-protein ligase Arkadia OS=Homo sapiens GN=RNF111 PE=1
SV=3
Length = 994
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 45/107 (42%), Gaps = 19/107 (17%)
Query: 92 YEELIALGEFIGQEKRGLSLNQISTC------------------LHACKSPPADGTKSGI 133
+EELI L E +G RG S I C LH + +
Sbjct: 880 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVTTDWFSQRKLHCKQDGEEGTEEDTE 939
Query: 134 DRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTE 180
++C IC EEGE V LPC HL+H C+ WL K CPIC +
Sbjct: 940 EKCTICLSILEEGED-VRRLPCMHLFHQVCVDQWLITNKKCPICRVD 985
>sp|Q6NRV8|R111B_XENLA E3 ubiquitin-protein ligase arkadia-B OS=Xenopus laevis GN=rnf111-b
PE=2 SV=1
Length = 959
Score = 58.5 bits (140), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 46/107 (42%), Gaps = 19/107 (17%)
Query: 92 YEELIALGEFIGQEKRGLSLNQISTC------------------LHACKSPPADGTKSGI 133
+EELI L E +G RG S I C LH+ + +
Sbjct: 845 FEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEATEEDTE 904
Query: 134 DRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTE 180
++C IC EEGE V LPC HL+H C+ WL K CPIC +
Sbjct: 905 EKCTICLSILEEGED-VRRLPCMHLFHQVCVDQWLITNKKCPICRVD 950
>sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1
Length = 518
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 61/104 (58%), Gaps = 7/104 (6%)
Query: 83 LELDVDE---LTYEELIALGEFIGQEK-RGLSLNQISTCLHACKSPPADGTKSGIDRCVI 138
ELDV++ YE L+ L E +G+ K RGL+ I L + + P++ +S CV+
Sbjct: 411 FELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQ-LPSYRFNPSNH-QSEQTLCVV 468
Query: 139 CQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEAS 182
C ++E + ++ +LPC H +H++C+ WL+ + CPIC +AS
Sbjct: 469 CMCDFESRQ-LLRVLPCNHEFHAKCVDKWLKGNRTCPICRADAS 511
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 47/101 (46%), Gaps = 12/101 (11%)
Query: 91 TYEELIALGEFIGQEKRGLSLNQIS--TCLHACKSPPADGTKSGID---------RCVIC 139
+YEEL+ L + +G RG N I T H K +K D +C IC
Sbjct: 239 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDSKGKKDEGEESDTDEKCTIC 298
Query: 140 QVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTE 180
E+GE V LPC HL+H C+ WL + K CPIC +
Sbjct: 299 LSMLEDGED-VRRLPCMHLFHQLCVDQWLAMSKKCPICRVD 338
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 50/101 (49%), Gaps = 12/101 (11%)
Query: 91 TYEELIALGEFIGQEKRGLSLNQIS--TCLHACKSP-PADGT-------KSGID-RCVIC 139
+YEEL+ L + +G RG N I T H K P DG +S D +C IC
Sbjct: 238 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDGKGKKDEGEESDTDEKCTIC 297
Query: 140 QVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTE 180
E+GE V LPC HL+H C+ WL + K CPIC +
Sbjct: 298 LSMLEDGED-VRRLPCMHLFHQLCVDQWLAMSKKCPICRVD 337
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 122 KSPPADGTKSG--IDRCVICQVEYEEGESIVALLPCEHLYHSECISNWL-QIKKICPICS 178
K P K G D C IC EYE+G+ + +LPC H YH +C+ WL + KK CP+C
Sbjct: 224 KKLPVHKFKKGDEYDVCAICLEEYEDGDKL-RILPCSHAYHCKCVDPWLTKTKKTCPVCK 282
Query: 179 TEASP 183
+ P
Sbjct: 283 QKVVP 287
>sp|P87139|YDM9_SCHPO Uncharacterized RING finger protein C57A7.09 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC57A7.09 PE=1 SV=1
Length = 372
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 136 CVICQVEYEEGESIVALLPCEHLYHSECISNWL-QIKKICPICSTEASPPK 185
CVIC + +G+ +VAL PC+H +H CI+ W+ + CP C+TE PPK
Sbjct: 321 CVICLESFTKGDKVVAL-PCKHEFHRPCIAKWIVDYRHACPTCNTEVPPPK 370
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 122 KSPPADGTKSG--IDRCVICQVEYEEGESIVALLPCEHLYHSECISNWL-QIKKICPICS 178
K P K G D C IC EYE+G+ + +LPC H YH +C+ WL + KK CP+C
Sbjct: 224 KKLPVHKFKKGDEYDVCAICLDEYEDGDKL-RILPCSHAYHCKCVDPWLTKTKKTCPVCK 282
Query: 179 TEASP 183
+ P
Sbjct: 283 QKVVP 287
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 122 KSPPADGTKSG--IDRCVICQVEYEEGESIVALLPCEHLYHSECISNWL-QIKKICPICS 178
K P K G D C IC EYE+G+ + +LPC H YH +C+ WL + KK CP+C
Sbjct: 224 KKLPVHKFKKGDEYDVCAICLDEYEDGDKL-RILPCSHAYHCKCVDPWLTKTKKTCPVCK 282
Query: 179 TEASP 183
+ P
Sbjct: 283 QKVVP 287
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 122 KSPPADGTKSG--IDRCVICQVEYEEGESIVALLPCEHLYHSECISNWL-QIKKICPICS 178
K P K G D C IC EYE+G+ + +LPC H YH +C+ WL + KK CP+C
Sbjct: 224 KKLPVHKFKKGDEYDVCAICLDEYEDGDKL-RILPCSHAYHCKCVDPWLTKTKKTCPVCK 282
Query: 179 TEASP 183
+ P
Sbjct: 283 QKVVP 287
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 122 KSPPADGTKSG--IDRCVICQVEYEEGESIVALLPCEHLYHSECISNWL-QIKKICPICS 178
K P K G D C IC EYE+G+ + +LPC H YH +C+ WL + KK CP+C
Sbjct: 224 KKLPVHKFKKGDEYDVCAICLEEYEDGDKL-RILPCSHAYHCKCVDPWLTKTKKTCPVCK 282
Query: 179 TEASP 183
+ P
Sbjct: 283 QKVVP 287
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 122 KSPPADGTKSG--IDRCVICQVEYEEGESIVALLPCEHLYHSECISNWL-QIKKICPICS 178
K P K G D C IC EYE+G+ + +LPC H YH +C+ WL + KK CP+C
Sbjct: 224 KKLPVHKFKKGDEYDVCAICLDEYEDGDKL-RILPCSHAYHCKCVDPWLTKTKKTCPVCK 282
Query: 179 TEASP 183
+ P
Sbjct: 283 QKVVP 287
>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana
GN=At3g19950 PE=2 SV=1
Length = 328
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 127 DGTKSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTE 180
D KS +++C +C E+E+G S V +PC+H++H +C+ WL++ CP+C E
Sbjct: 207 DMLKSEMNQCAVCMDEFEDG-SDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFE 259
>sp|Q5M974|RN181_XENTR E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis GN=rnf181
PE=2 SV=1
Length = 156
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 135 RCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTE 180
+C +C +E+EEGE+ V LPCEHL+HS CI WL CP+C E
Sbjct: 78 KCPVCLLEFEEGET-VRQLPCEHLFHSSCILPWLGKTNSCPLCRHE 122
>sp|Q6GPV5|RN181_XENLA E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis GN=rnf181 PE=2
SV=1
Length = 156
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 135 RCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTE 180
+C +C +E+EEGE+ V LPCEHL+HS CI WL CP+C E
Sbjct: 78 KCPVCLLEFEEGET-VRQLPCEHLFHSACILPWLGKTNSCPLCRHE 122
>sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1
SV=1
Length = 350
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 104 QEKRGLSLNQISTCLHACKSPPADGTKSG--IDRCVICQVEYEEGESIVALLPCEHLYHS 161
Q ++ L N+++ K P + G D C IC EYE+G+ + +LPC H YHS
Sbjct: 198 QHRKRLQRNRLTK--EQLKQIPTHDYQKGDQYDVCAICLDEYEDGDKL-RVLPCAHAYHS 254
Query: 162 ECISNWL-QIKKICPIC 177
C+ WL Q +K CPIC
Sbjct: 255 RCVDPWLTQTRKTCPIC 271
>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167
PE=2 SV=1
Length = 349
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 104 QEKRGLSLNQISTCLHACKSPPADGTKSG--IDRCVICQVEYEEGESIVALLPCEHLYHS 161
Q ++ L N+++ K P + G D C IC EYE+G+ + +LPC H YHS
Sbjct: 198 QHRKRLQRNRLTK--EQLKQIPTHDYQKGDEYDVCAICLDEYEDGDKL-RILPCAHAYHS 254
Query: 162 ECISNWL-QIKKICPIC 177
C+ WL Q +K CPIC
Sbjct: 255 RCVDPWLTQTRKTCPIC 271
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 134 DRCVICQVEYEEGESIVALLPCEHLYHSECISNWL-QIKKICPIC 177
D C IC EYE+G+ + +LPC H YHS C+ WL Q +K CPIC
Sbjct: 228 DVCAICLDEYEDGDKL-RVLPCAHAYHSRCVDPWLTQTRKTCPIC 271
>sp|Q9Y3C5|RNF11_HUMAN RING finger protein 11 OS=Homo sapiens GN=RNF11 PE=1 SV=1
Length = 154
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 89 ELTYEELIALGEFIGQEKRGLSLNQISTCLHACKSPPADGTKSGIDRCVICQVEYEEGES 148
+LT EE I + + IG I P DG++ I CVIC +++ G+
Sbjct: 61 QLTEEEQIRIAQRIGL---------IQHLPKGVYDPGRDGSEKKIRECVICMMDFVYGDP 111
Query: 149 IVALLPCEHLYHSECISNWLQIKKICPIC 177
I LPC H+YH +CI +WL CP C
Sbjct: 112 I-RFLPCMHIYHLDCIDDWLMRSFTCPSC 139
>sp|Q08DI6|RNF11_BOVIN RING finger protein 11 OS=Bos taurus GN=RNF11 PE=2 SV=1
Length = 154
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 89 ELTYEELIALGEFIGQEKRGLSLNQISTCLHACKSPPADGTKSGIDRCVICQVEYEEGES 148
+LT EE I + + IG I P DG++ I CVIC +++ G+
Sbjct: 61 QLTEEEQIRIAQRIGL---------IQHLPKGVYDPGRDGSEKKIRECVICMMDFVYGDP 111
Query: 149 IVALLPCEHLYHSECISNWLQIKKICPIC 177
I LPC H+YH +CI +WL CP C
Sbjct: 112 I-RFLPCMHIYHLDCIDDWLMRSFTCPSC 139
>sp|Q9QYK7|RNF11_MOUSE RING finger protein 11 OS=Mus musculus GN=Rnf11 PE=1 SV=1
Length = 154
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 89 ELTYEELIALGEFIGQEKRGLSLNQISTCLHACKSPPADGTKSGIDRCVICQVEYEEGES 148
+LT EE I + + IG I P DG++ I CVIC +++ G+
Sbjct: 61 QLTEEEQIRIAQRIGL---------IQHLPKGVYDPGRDGSEKKIRECVICMMDFVYGDP 111
Query: 149 IVALLPCEHLYHSECISNWLQIKKICPIC 177
I LPC H+YH +CI +WL CP C
Sbjct: 112 I-RFLPCMHIYHLDCIDDWLMRSFTCPSC 139
>sp|Q9SKK8|ATL22_ARATH RING-H2 finger protein ATL22 OS=Arabidopsis thaliana GN=ATL22 PE=2
SV=2
Length = 377
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 136 CVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASP 183
C IC EY E++ L CEH +H+ECI WL++ CP+C + SP
Sbjct: 327 CPICLSEYATKETVRCLPECEHCFHTECIDAWLKLHSSCPVCRSNPSP 374
>sp|Q67YI6|ATL65_ARATH RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2
SV=2
Length = 411
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 120 ACKSPPADGTKSGID--RCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPIC 177
AC PA G S + C +C +E+EEG+ + L C H +H ECI WL+ CP+C
Sbjct: 138 ACTGKPAVGKTSAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLC 197
Query: 178 ST 179
T
Sbjct: 198 RT 199
>sp|Q9FGJ6|ATL79_ARATH RING-H2 finger protein ATL79 OS=Arabidopsis thaliana GN=ATL79 PE=2
SV=1
Length = 166
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 136 CVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICST-----EASPPKNHNNA 190
C IC E+E+GESI L C+H +H +CI WL + CP C T + P +H NA
Sbjct: 107 CAICLSEFEQGESIQVLEKCQHGFHVKCIHKWLSTRSSCPTCRTSIFSQHSETPSSHINA 166
>sp|O55176|PJA1_MOUSE E3 ubiquitin-protein ligase Praja-1 OS=Mus musculus GN=Pja1 PE=1
SV=3
Length = 578
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 136 CVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPP 184
C IC EY +GE + LPC H +H C+S WLQ CP+C PP
Sbjct: 530 CPICCSEYVKGE-VATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPP 577
>sp|Q8NG27|PJA1_HUMAN E3 ubiquitin-protein ligase Praja-1 OS=Homo sapiens GN=PJA1 PE=1
SV=2
Length = 643
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 136 CVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPP 184
C IC EY +GE + LPC H +H C+S WLQ CP+C PP
Sbjct: 595 CPICCSEYVKGE-VATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPP 642
>sp|Q9C7I1|ATL34_ARATH RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2
SV=1
Length = 327
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPPK 185
K G++ C IC E+E+ E++ + PC H +H+ CI WL + CP+C PPK
Sbjct: 123 KGGVE-CAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRASL-PPK 176
>sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1
PE=2 SV=1
Length = 338
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTE 180
S ++C +C ++EEG +PC+HLYH +C+ WL++ CP+C E
Sbjct: 218 NSEFNQCAVCMDDFEEGTE-AKQMPCKHLYHKDCLLPWLELHNSCPVCRHE 267
>sp|P0CH01|AT21A_ARATH Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana
GN=ATL21A PE=3 SV=1
Length = 372
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 136 CVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPPK 185
C IC EY E++ + C+H +HSECI WL+I CP+C SP +
Sbjct: 320 CPICLSEYASKETVRCIPECDHCFHSECIDVWLKIHGSCPLCRNSPSPAR 369
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 90 LTYEELIALGEFIGQEKRGLSLNQISTCLHACKSPPADGTKSGIDRCVICQVEYEEGESI 149
L+ + L E + RGL+ QI S G + C +C EY EG +
Sbjct: 544 LSLAQFFLLNEDDDDQPRGLTKEQIDNL-----STRNFGENDALKTCSVCITEYTEGNKL 598
Query: 150 VALLPCEHLYHSECISNWLQIKKICPIC 177
L PC H YH CI WL CPIC
Sbjct: 599 RKL-PCSHEYHVHCIDRWLSENSTCPIC 625
>sp|Q9M0R7|ATL39_ARATH RING-H2 finger protein ATL39 OS=Arabidopsis thaliana GN=ATL39 PE=2
SV=1
Length = 132
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 126 ADGTKSGIDR--CVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASP 183
A G + GI CV+C E+++ E++ + PC H++H++C+ WL CPIC + P
Sbjct: 73 ARGIEPGIGELECVVCLNEFKDDETLRLVPPCVHVFHADCVDIWLSHSSTCPICRAKVVP 132
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 51.6 bits (122), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 90 LTYEELIALGEFIGQEKRGLSLNQISTCLHACKSPPADGTKSGIDRCVICQVEYEEGESI 149
L+ + L E + RGL+ QI A +S G + C +C EY EG +
Sbjct: 529 LSLAQFFLLNEDDDDQPRGLTKEQIDNL--AMRS---FGENDALKTCSVCITEYTEGNKL 583
Query: 150 VALLPCEHLYHSECISNWLQIKKICPIC 177
L PC H YH CI WL CPIC
Sbjct: 584 RKL-PCSHEYHVHCIDRWLSENSTCPIC 610
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 51.2 bits (121), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 90 LTYEELIALGEFIGQEKRGLSLNQISTCLHACKSPPADGTKSGIDRCVICQVEYEEGESI 149
L+ + L E + RGL+ QI S G + C +C EY EG +
Sbjct: 527 LSLAQFFLLNEDDDDQPRGLTKEQIDNL-----STRNFGENDALKTCSVCITEYTEGNKL 581
Query: 150 VALLPCEHLYHSECISNWLQIKKICPIC 177
L PC H YH CI WL CPIC
Sbjct: 582 RKL-PCSHEYHIHCIDRWLSENSTCPIC 608
>sp|Q8LGA5|ATL31_ARATH E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana GN=ATL31
PE=1 SV=2
Length = 368
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 136 CVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICST 179
C IC E+E+ E++ L C+H++H CI WLQ CP+C T
Sbjct: 124 CAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRT 167
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 131 SGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEAS 182
SG++ C +C+ +Y GES V LPC HL+H++CI WL+ CP+C S
Sbjct: 223 SGLE-CPVCKEDYTVGES-VRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSLS 272
>sp|Q9SLC4|ATL40_ARATH RING-H2 finger protein ATL40 OS=Arabidopsis thaliana GN=ATL40 PE=2
SV=1
Length = 217
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 136 CVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASP 183
C +C EE ++ L C+H++H C+ WL + CP+C TEA P
Sbjct: 100 CAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQSTCPVCRTEAEP 147
>sp|Q9P7E1|YOF7_SCHPO Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP4H10.07 PE=1 SV=1
Length = 583
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 44/110 (40%), Gaps = 30/110 (27%)
Query: 85 LDVDELTYEELIALGEFIGQEKRGLSLNQISTCLHACKSPPADGTK-----------SGI 133
L D TYE+++ L IG EK PP K SG
Sbjct: 479 LFTDSPTYEDMLLLNSIIGIEK-----------------PPVASQKDLEKAGGVFPFSGT 521
Query: 134 D-RCVICQVEYEEGESIVALLPCEHLYHSECISNWL-QIKKICPICSTEA 181
D RC++C +E + L C H +H ECI WL + CP+C T+
Sbjct: 522 DERCLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQNSCPLCRTKG 571
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 50.8 bits (120), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 90 LTYEELIALGEFIGQEKRGLSLNQISTCLHACKSPPADGTKSGIDRCVICQVEYEEGESI 149
L+ + L E + RGL+ QI S G + C +C EY EG +
Sbjct: 662 LSLAQFFLLNEDDDDQPRGLTKEQIDNL-----STRNYGENDALKTCSVCITEYTEGNKL 716
Query: 150 VALLPCEHLYHSECISNWLQIKKICPIC 177
L PC H YH CI WL CPIC
Sbjct: 717 RKL-PCSHEYHIHCIDRWLSENSTCPIC 743
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,068,830
Number of Sequences: 539616
Number of extensions: 3455498
Number of successful extensions: 16474
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 311
Number of HSP's that attempted gapping in prelim test: 14362
Number of HSP's gapped (non-prelim): 1536
length of query: 195
length of database: 191,569,459
effective HSP length: 111
effective length of query: 84
effective length of database: 131,672,083
effective search space: 11060454972
effective search space used: 11060454972
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)