Query 044318
Match_columns 195
No_of_seqs 261 out of 1718
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 23:42:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044318.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044318hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.8 1.7E-18 5.8E-23 122.9 7.8 79 103-183 11-89 (91)
2 1x4j_A Ring finger protein 38; 99.7 3.2E-17 1.1E-21 111.9 5.7 68 116-185 7-74 (75)
3 2ect_A Ring finger protein 126 99.6 4.2E-16 1.4E-20 106.9 7.3 61 129-190 11-71 (78)
4 2ep4_A Ring finger protein 24; 99.6 5E-16 1.7E-20 105.5 7.5 60 130-190 12-71 (74)
5 1iym_A EL5; ring-H2 finger, ub 99.6 2.7E-16 9.2E-21 100.7 5.0 52 131-182 3-54 (55)
6 2kiz_A E3 ubiquitin-protein li 99.6 1E-15 3.5E-20 102.5 6.7 56 129-185 10-65 (69)
7 2ecm_A Ring finger and CHY zin 99.6 1E-15 3.5E-20 97.9 4.9 52 131-182 3-54 (55)
8 2ecl_A Ring-box protein 2; RNF 99.6 1.7E-15 5.9E-20 105.1 6.3 53 131-183 13-76 (81)
9 1v87_A Deltex protein 2; ring- 99.6 2.8E-15 9.6E-20 109.8 7.0 56 132-187 24-98 (114)
10 3ng2_A RNF4, snurf, ring finge 99.5 5.8E-15 2E-19 99.1 4.2 57 130-187 7-67 (71)
11 2ea6_A Ring finger protein 4; 99.5 9.5E-15 3.3E-19 97.3 4.8 54 129-183 11-68 (69)
12 2d8s_A Cellular modulator of i 99.5 2.2E-14 7.7E-19 99.6 6.5 65 123-189 5-76 (80)
13 3dpl_R Ring-box protein 1; ubi 99.5 1.4E-14 4.8E-19 105.8 5.0 51 132-182 36-100 (106)
14 2djb_A Polycomb group ring fin 99.5 3.6E-14 1.2E-18 95.9 6.5 58 130-190 12-69 (72)
15 2xeu_A Ring finger protein 4; 99.5 1.4E-14 4.9E-19 95.0 3.6 53 132-185 2-58 (64)
16 2d8t_A Dactylidin, ring finger 99.5 3.5E-14 1.2E-18 95.7 5.2 52 129-184 11-62 (71)
17 2ecn_A Ring finger protein 141 99.5 4.7E-14 1.6E-18 94.6 4.8 51 130-185 12-62 (70)
18 1chc_A Equine herpes virus-1 r 99.5 5.8E-14 2E-18 93.5 4.9 50 131-183 3-52 (68)
19 2ct2_A Tripartite motif protei 99.4 2.5E-13 8.5E-18 94.6 7.1 56 129-184 11-69 (88)
20 4ayc_A E3 ubiquitin-protein li 99.4 6.8E-14 2.3E-18 106.2 3.8 48 133-184 53-100 (138)
21 2yur_A Retinoblastoma-binding 99.4 2.8E-13 9.6E-18 92.1 6.3 53 130-186 12-67 (74)
22 2ecv_A Tripartite motif-contai 99.4 2E-13 7E-18 94.1 5.7 59 130-192 16-80 (85)
23 2csy_A Zinc finger protein 183 99.4 1.6E-13 5.6E-18 94.6 5.1 49 130-182 12-60 (81)
24 2ecw_A Tripartite motif-contai 99.4 2.5E-13 8.7E-18 93.6 6.1 58 130-191 16-79 (85)
25 2egp_A Tripartite motif-contai 99.4 6.1E-14 2.1E-18 95.9 2.7 58 130-191 9-73 (79)
26 4a0k_B E3 ubiquitin-protein li 99.4 2.5E-14 8.5E-19 106.2 0.6 52 132-183 47-112 (117)
27 1t1h_A Gspef-atpub14, armadill 99.4 1.2E-13 3.9E-18 94.5 3.6 55 131-189 6-61 (78)
28 2ecy_A TNF receptor-associated 99.4 2.1E-13 7E-18 90.5 4.6 52 130-185 12-64 (66)
29 2ysl_A Tripartite motif-contai 99.4 4.7E-13 1.6E-17 90.2 6.3 52 130-185 17-71 (73)
30 1g25_A CDK-activating kinase a 99.4 1.7E-13 5.8E-18 90.7 4.0 55 133-187 3-59 (65)
31 3lrq_A E3 ubiquitin-protein li 99.4 6.5E-14 2.2E-18 100.7 1.4 53 132-187 21-74 (100)
32 2ct0_A Non-SMC element 1 homol 99.4 6.3E-13 2.1E-17 90.9 4.7 57 129-188 11-69 (74)
33 2y43_A E3 ubiquitin-protein li 99.3 1.5E-13 5.2E-18 98.2 1.5 52 133-187 22-73 (99)
34 3fl2_A E3 ubiquitin-protein li 99.3 9.5E-13 3.2E-17 97.9 4.9 48 132-183 51-99 (124)
35 4ap4_A E3 ubiquitin ligase RNF 99.3 6.9E-13 2.3E-17 98.6 3.5 55 131-186 5-63 (133)
36 3ztg_A E3 ubiquitin-protein li 99.3 8.9E-13 3E-17 92.8 3.5 49 130-182 10-61 (92)
37 1jm7_A BRCA1, breast cancer ty 99.3 8.4E-13 2.9E-17 96.0 3.5 53 133-189 21-76 (112)
38 2ysj_A Tripartite motif-contai 99.3 5E-12 1.7E-16 82.9 6.2 44 130-177 17-63 (63)
39 2ckl_A Polycomb group ring fin 99.3 1.5E-12 5.1E-17 94.5 3.7 50 132-184 14-63 (108)
40 2ckl_B Ubiquitin ligase protei 99.2 3.3E-12 1.1E-16 99.4 4.3 49 132-183 53-102 (165)
41 2ecj_A Tripartite motif-contai 99.2 5.8E-12 2E-16 80.9 4.7 44 130-177 12-58 (58)
42 1z6u_A NP95-like ring finger p 99.2 2.3E-12 8E-17 99.3 3.3 48 133-184 78-126 (150)
43 4ap4_A E3 ubiquitin ligase RNF 99.2 2.4E-12 8.3E-17 95.6 2.3 55 130-185 69-127 (133)
44 2kre_A Ubiquitin conjugation f 99.2 7.6E-12 2.6E-16 90.2 3.9 55 131-189 27-81 (100)
45 2kr4_A Ubiquitin conjugation f 99.2 5.5E-12 1.9E-16 88.2 3.0 55 131-189 12-66 (85)
46 3l11_A E3 ubiquitin-protein li 99.2 4.4E-12 1.5E-16 93.0 2.3 48 132-183 14-62 (115)
47 1e4u_A Transcriptional repress 99.2 1.7E-11 5.8E-16 84.5 5.2 57 130-187 8-66 (78)
48 3hct_A TNF receptor-associated 99.2 4.9E-12 1.7E-16 93.3 2.4 52 130-185 15-67 (118)
49 1bor_A Transcription factor PM 99.2 9.5E-12 3.2E-16 80.2 3.3 49 131-186 4-52 (56)
50 1rmd_A RAG1; V(D)J recombinati 99.2 8E-12 2.7E-16 91.7 3.3 50 133-186 23-73 (116)
51 1jm7_B BARD1, BRCA1-associated 99.2 6.3E-12 2.1E-16 92.6 2.5 52 132-189 21-73 (117)
52 1wgm_A Ubiquitin conjugation f 99.2 1.4E-11 4.9E-16 88.4 4.1 55 131-189 20-75 (98)
53 2vje_A E3 ubiquitin-protein li 99.1 2E-11 6.8E-16 80.9 3.2 49 132-182 7-56 (64)
54 3knv_A TNF receptor-associated 99.1 2.2E-11 7.5E-16 92.9 2.9 51 130-184 28-79 (141)
55 2vje_B MDM4 protein; proto-onc 99.1 3.3E-11 1.1E-15 79.5 3.1 50 131-182 5-55 (63)
56 2y1n_A E3 ubiquitin-protein li 99.1 6.3E-11 2.1E-15 103.9 4.5 48 133-184 332-380 (389)
57 2c2l_A CHIP, carboxy terminus 99.0 9.7E-11 3.3E-15 97.0 4.3 56 130-189 205-261 (281)
58 4ic3_A E3 ubiquitin-protein li 99.0 7.8E-11 2.7E-15 80.0 2.2 43 133-183 24-67 (74)
59 2yu4_A E3 SUMO-protein ligase 99.0 1.3E-10 4.4E-15 82.6 1.6 56 131-189 5-69 (94)
60 3k1l_B Fancl; UBC, ring, RWD, 99.0 1.2E-10 4E-15 100.3 1.3 55 130-184 305-374 (381)
61 3hcs_A TNF receptor-associated 98.9 2.4E-10 8.2E-15 89.1 2.4 52 130-185 15-67 (170)
62 2f42_A STIP1 homology and U-bo 98.9 5E-10 1.7E-14 88.6 2.8 55 131-189 104-159 (179)
63 2ecg_A Baculoviral IAP repeat- 98.9 7.2E-10 2.5E-14 75.3 3.0 44 133-184 25-69 (75)
64 2ea5_A Cell growth regulator w 98.8 3.8E-09 1.3E-13 70.7 4.9 48 129-184 11-59 (68)
65 2yho_A E3 ubiquitin-protein li 98.8 1.5E-09 5E-14 74.8 2.0 44 133-184 18-62 (79)
66 1wim_A KIAA0161 protein; ring 98.8 3.8E-09 1.3E-13 74.6 3.8 48 132-180 4-61 (94)
67 1vyx_A ORF K3, K3RING; zinc-bi 98.8 4.8E-09 1.6E-13 68.6 3.6 50 130-183 3-59 (60)
68 3htk_C E3 SUMO-protein ligase 98.7 1.2E-09 4E-14 91.0 0.4 57 130-189 178-238 (267)
69 2bay_A PRE-mRNA splicing facto 98.7 2.6E-09 8.9E-14 70.1 1.9 53 133-189 3-56 (61)
70 3t6p_A Baculoviral IAP repeat- 98.7 8.6E-09 3E-13 89.2 3.0 44 132-183 294-338 (345)
71 3vk6_A E3 ubiquitin-protein li 98.4 2E-07 6.7E-12 66.5 3.9 46 135-183 3-49 (101)
72 3nw0_A Non-structural maintena 98.3 7.9E-07 2.7E-11 73.2 5.9 53 132-187 179-233 (238)
73 2ko5_A Ring finger protein Z; 97.0 0.00049 1.7E-08 48.3 3.7 50 129-184 24-74 (99)
74 2lri_C Autoimmune regulator; Z 95.7 0.013 4.3E-07 38.5 4.2 49 130-182 9-61 (66)
75 1we9_A PHD finger family prote 95.5 0.0093 3.2E-07 38.5 2.9 51 130-180 3-58 (64)
76 2jun_A Midline-1; B-BOX, TRIM, 95.5 0.0085 2.9E-07 41.9 2.9 35 133-168 3-38 (101)
77 1wil_A KIAA1045 protein; ring 93.6 0.082 2.8E-06 36.3 4.1 37 129-167 11-47 (89)
78 2yt5_A Metal-response element- 92.7 0.06 2E-06 34.8 2.3 54 130-183 3-64 (66)
79 2k16_A Transcription initiatio 92.7 0.053 1.8E-06 36.0 2.1 54 130-184 15-72 (75)
80 3lqh_A Histone-lysine N-methyl 92.5 0.076 2.6E-06 41.6 3.1 49 133-181 2-64 (183)
81 2kgg_A Histone demethylase jar 92.1 0.11 3.7E-06 32.1 2.8 44 135-178 4-52 (52)
82 2xb1_A Pygopus homolog 2, B-ce 92.0 0.048 1.7E-06 38.9 1.3 50 133-182 3-63 (105)
83 1wee_A PHD finger family prote 91.8 0.082 2.8E-06 34.9 2.1 53 130-183 13-69 (72)
84 1weo_A Cellulose synthase, cat 91.8 0.3 1E-05 33.7 5.0 58 131-188 14-75 (93)
85 2l5u_A Chromodomain-helicase-D 91.8 0.15 5E-06 32.6 3.2 47 130-180 8-58 (61)
86 1wep_A PHF8; structural genomi 91.7 0.29 9.9E-06 32.7 4.9 50 131-181 10-64 (79)
87 2yql_A PHD finger protein 21A; 91.4 0.064 2.2E-06 33.6 1.2 47 129-179 5-55 (56)
88 1fp0_A KAP-1 corepressor; PHD 90.9 0.41 1.4E-05 33.0 5.0 50 129-182 21-74 (88)
89 3u5n_A E3 ubiquitin-protein li 90.8 0.13 4.6E-06 40.7 2.8 49 130-182 4-56 (207)
90 1mm2_A MI2-beta; PHD, zinc fin 90.6 0.11 3.8E-06 33.2 1.8 48 130-181 6-57 (61)
91 1f62_A Transcription factor WS 90.0 0.2 6.7E-06 30.5 2.5 44 135-179 2-49 (51)
92 2ysm_A Myeloid/lymphoid or mix 89.8 0.21 7.3E-06 35.4 2.9 48 130-178 4-55 (111)
93 3o36_A Transcription intermedi 89.7 0.19 6.7E-06 38.9 2.8 47 132-182 3-53 (184)
94 2vpb_A Hpygo1, pygopus homolog 89.4 0.28 9.5E-06 31.8 3.0 49 130-178 5-64 (65)
95 2l43_A N-teminal domain from h 89.0 0.28 9.5E-06 33.7 2.9 55 130-184 22-79 (88)
96 3v43_A Histone acetyltransfera 88.7 0.23 7.9E-06 35.5 2.4 45 135-179 63-111 (112)
97 3m62_A Ubiquitin conjugation f 88.5 0.23 7.8E-06 48.0 2.9 55 131-189 889-944 (968)
98 2lv9_A Histone-lysine N-methyl 88.4 0.46 1.6E-05 33.2 3.8 46 132-179 27-75 (98)
99 1wem_A Death associated transc 88.1 0.35 1.2E-05 32.0 2.9 48 133-182 16-72 (76)
100 1wev_A Riken cDNA 1110020M19; 88.0 0.18 6.3E-06 34.6 1.5 50 133-182 16-74 (88)
101 1xwh_A Autoimmune regulator; P 87.9 0.24 8.3E-06 32.0 1.9 48 130-181 5-56 (66)
102 2lbm_A Transcriptional regulat 87.5 0.73 2.5E-05 34.6 4.6 46 130-179 60-116 (142)
103 2cs3_A Protein C14ORF4, MY039 87.5 1 3.4E-05 30.6 4.7 41 130-170 12-52 (93)
104 2ri7_A Nucleosome-remodeling f 87.3 0.16 5.5E-06 38.9 0.9 49 131-180 6-59 (174)
105 3o70_A PHD finger protein 13; 86.8 0.31 1.1E-05 31.8 1.9 48 130-179 16-66 (68)
106 3v43_A Histone acetyltransfera 86.7 0.95 3.2E-05 32.2 4.7 35 132-166 4-43 (112)
107 2puy_A PHD finger protein 21A; 86.5 0.18 6.1E-06 32.0 0.6 47 131-181 3-53 (60)
108 3asl_A E3 ubiquitin-protein li 86.2 0.3 1E-05 32.0 1.6 44 135-179 20-68 (70)
109 2kwj_A Zinc finger protein DPF 86.0 0.46 1.6E-05 34.0 2.7 34 134-167 2-41 (114)
110 1y02_A CARP2, FYVE-ring finger 85.6 0.18 6E-06 36.9 0.3 52 130-181 16-67 (120)
111 2ku3_A Bromodomain-containing 85.2 0.31 1E-05 32.2 1.3 51 130-180 13-66 (71)
112 2e6s_A E3 ubiquitin-protein li 85.0 0.38 1.3E-05 32.2 1.7 44 135-179 28-76 (77)
113 2e6r_A Jumonji/ARID domain-con 84.8 0.27 9.2E-06 34.1 0.9 50 130-180 13-66 (92)
114 1weu_A Inhibitor of growth fam 83.5 0.82 2.8E-05 31.7 2.9 46 132-182 35-87 (91)
115 3ql9_A Transcriptional regulat 83.4 1.7 5.9E-05 32.0 4.8 46 130-179 54-110 (129)
116 1wew_A DNA-binding family prot 83.3 0.7 2.4E-05 30.8 2.5 49 132-182 15-74 (78)
117 1wfk_A Zinc finger, FYVE domai 82.7 1.6 5.4E-05 29.8 4.2 53 130-182 6-65 (88)
118 1wen_A Inhibitor of growth fam 82.6 2.1 7E-05 28.1 4.5 46 132-182 15-67 (71)
119 3shb_A E3 ubiquitin-protein li 81.9 0.53 1.8E-05 31.5 1.4 44 135-179 28-76 (77)
120 2ro1_A Transcription intermedi 80.7 0.49 1.7E-05 36.9 1.1 45 133-181 2-50 (189)
121 2yw8_A RUN and FYVE domain-con 80.7 1.5 5.1E-05 29.4 3.4 53 130-182 16-74 (82)
122 2rsd_A E3 SUMO-protein ligase 80.5 0.36 1.2E-05 31.4 0.2 45 133-179 10-64 (68)
123 1z2q_A LM5-1; membrane protein 80.4 2.8 9.5E-05 28.2 4.7 54 129-182 17-78 (84)
124 1joc_A EEA1, early endosomal a 79.7 1.1 3.6E-05 32.7 2.5 39 130-168 66-104 (125)
125 2cu8_A Cysteine-rich protein 2 79.3 2 6.7E-05 27.7 3.6 42 132-184 8-49 (76)
126 1z60_A TFIIH basal transcripti 79.1 1 3.5E-05 28.7 2.0 43 134-177 16-58 (59)
127 3t7l_A Zinc finger FYVE domain 78.3 1.3 4.5E-05 30.3 2.5 51 131-181 18-74 (90)
128 1x4u_A Zinc finger, FYVE domai 77.9 1.9 6.5E-05 29.0 3.2 38 130-167 11-48 (84)
129 3i2d_A E3 SUMO-protein ligase 77.0 1.9 6.4E-05 37.3 3.7 48 134-185 250-302 (371)
130 1iml_A CRIP, cysteine rich int 76.9 2.1 7.1E-05 27.6 3.1 12 134-145 28-39 (76)
131 4fo9_A E3 SUMO-protein ligase 76.5 2 7E-05 36.9 3.7 47 134-184 216-267 (360)
132 1x4k_A Skeletal muscle LIM-pro 76.4 3.2 0.00011 26.2 3.9 42 133-184 5-46 (72)
133 2dj7_A Actin-binding LIM prote 75.8 3.8 0.00013 26.9 4.3 41 131-182 13-53 (80)
134 1zbd_B Rabphilin-3A; G protein 75.8 2 6.8E-05 31.7 3.1 49 131-179 53-106 (134)
135 1vfy_A Phosphatidylinositol-3- 75.7 2.3 7.9E-05 27.8 3.1 34 134-167 12-45 (73)
136 2co8_A NEDD9 interacting prote 75.4 3.5 0.00012 27.1 4.0 44 130-184 12-55 (82)
137 4gne_A Histone-lysine N-methyl 75.3 4.4 0.00015 28.7 4.6 48 129-182 11-64 (107)
138 3mpx_A FYVE, rhogef and PH dom 74.9 0.6 2.1E-05 40.4 0.0 52 130-181 372-430 (434)
139 3ask_A E3 ubiquitin-protein li 74.2 1.1 3.8E-05 36.1 1.4 45 135-180 176-225 (226)
140 1x64_A Alpha-actinin-2 associa 74.0 5.8 0.0002 26.3 4.9 43 130-184 22-64 (89)
141 1wyh_A SLIM 2, skeletal muscle 73.7 2.9 0.0001 26.4 3.2 42 133-184 5-46 (72)
142 1dvp_A HRS, hepatocyte growth 73.4 2 6.9E-05 34.0 2.8 36 133-168 161-196 (220)
143 2ysm_A Myeloid/lymphoid or mix 72.9 1.3 4.5E-05 31.2 1.4 46 135-181 56-105 (111)
144 3zyq_A Hepatocyte growth facto 72.8 2.1 7.3E-05 34.1 2.8 50 133-182 164-221 (226)
145 2vnf_A ING 4, P29ING4, inhibit 71.9 1.7 5.7E-05 27.4 1.6 43 132-179 9-58 (60)
146 3c6w_A P28ING5, inhibitor of g 71.5 1.8 6.1E-05 27.3 1.6 43 132-179 8-57 (59)
147 1x63_A Skeletal muscle LIM-pro 71.2 4.9 0.00017 26.1 3.9 43 132-184 14-56 (82)
148 1g47_A Pinch protein; LIM doma 71.0 4 0.00014 26.1 3.4 44 131-184 9-52 (77)
149 1x61_A Thyroid receptor intera 70.7 5.4 0.00018 25.1 4.0 40 133-182 5-44 (72)
150 1x4l_A Skeletal muscle LIM-pro 69.9 6.1 0.00021 24.9 4.1 42 132-183 4-47 (72)
151 3o7a_A PHD finger protein 13 v 69.5 1.7 6E-05 26.4 1.2 41 138-179 8-51 (52)
152 3kqi_A GRC5, PHD finger protei 69.2 2.3 8E-05 27.9 1.9 47 135-181 11-62 (75)
153 1x68_A FHL5 protein; four-and- 68.5 6.3 0.00022 25.2 4.0 40 133-182 5-46 (76)
154 1a7i_A QCRP2 (LIM1); LIM domai 68.5 3 0.0001 27.2 2.3 42 132-184 6-47 (81)
155 2kwj_A Zinc finger protein DPF 68.0 0.72 2.5E-05 33.0 -0.9 46 135-181 60-109 (114)
156 2dar_A PDZ and LIM domain prot 67.7 5.6 0.00019 26.4 3.7 42 131-184 23-64 (90)
157 1zfo_A LAsp-1; LIM domain, zin 67.4 2.3 7.7E-05 23.1 1.3 29 133-164 3-31 (31)
158 3f6q_B LIM and senescent cell 67.4 6 0.0002 24.7 3.6 43 132-184 10-52 (72)
159 1x62_A C-terminal LIM domain p 66.7 8.5 0.00029 24.8 4.3 40 131-182 13-52 (79)
160 2d8z_A Four and A half LIM dom 66.3 7.9 0.00027 24.2 4.0 40 132-183 4-43 (70)
161 2gmg_A Hypothetical protein PF 65.3 2 6.8E-05 30.5 0.9 26 154-184 72-97 (105)
162 2o35_A Hypothetical protein DU 64.8 2.1 7.2E-05 30.1 1.0 12 158-169 42-53 (105)
163 3fyb_A Protein of unknown func 64.5 2.2 7.4E-05 30.0 1.0 12 158-169 41-52 (104)
164 2g6q_A Inhibitor of growth pro 63.9 3.2 0.00011 26.4 1.7 45 132-179 10-59 (62)
165 2d8y_A Eplin protein; LIM doma 63.8 8 0.00027 25.7 3.8 42 132-184 14-55 (91)
166 2d8x_A Protein pinch; LIM doma 62.5 6.4 0.00022 24.7 3.0 41 132-184 4-44 (70)
167 2cor_A Pinch protein; LIM doma 61.7 11 0.00039 24.3 4.2 43 130-184 12-54 (79)
168 1nyp_A Pinch protein; LIM doma 61.6 6.7 0.00023 24.2 3.0 39 133-183 5-43 (66)
169 2jvx_A NF-kappa-B essential mo 60.9 2 6.8E-05 23.1 0.2 14 171-184 3-16 (28)
170 2cur_A Skeletal muscle LIM-pro 60.4 7.7 0.00027 24.2 3.1 40 132-183 4-43 (69)
171 2zet_C Melanophilin; complex, 59.7 5.3 0.00018 30.1 2.5 47 131-179 66-116 (153)
172 3a1b_A DNA (cytosine-5)-methyl 59.2 8.9 0.0003 29.1 3.7 45 130-178 76-132 (159)
173 2egq_A FHL1 protein; LIM domai 59.1 11 0.00038 23.9 3.8 42 133-184 15-59 (77)
174 2ct7_A Ring finger protein 31; 58.4 2.3 7.8E-05 28.7 0.2 37 135-171 27-65 (86)
175 2l4z_A DNA endonuclease RBBP8, 58.1 8.6 0.0003 27.4 3.4 41 131-182 59-99 (123)
176 1v6g_A Actin binding LIM prote 56.3 7.7 0.00026 25.1 2.6 39 133-183 15-53 (81)
177 2cup_A Skeletal muscle LIM-pro 55.5 17 0.00059 24.3 4.4 46 134-184 34-79 (101)
178 2jmo_A Parkin; IBR, E3 ligase, 54.6 2.1 7.2E-05 28.5 -0.5 40 133-174 25-73 (80)
179 3kv4_A PHD finger protein 8; e 54.4 3.4 0.00012 36.5 0.7 49 134-182 5-58 (447)
180 1wd2_A Ariadne-1 protein homol 53.7 4.8 0.00016 25.4 1.2 39 133-171 6-48 (60)
181 1wig_A KIAA1808 protein; LIM d 53.7 9.2 0.00031 24.4 2.6 37 134-182 6-42 (73)
182 2l3k_A Rhombotin-2, linker, LI 52.9 6.9 0.00024 27.7 2.1 44 132-179 35-78 (123)
183 1x6a_A LIMK-2, LIM domain kina 52.9 11 0.00038 24.3 3.0 39 133-183 15-53 (81)
184 2jmi_A Protein YNG1, ING1 homo 52.4 4.1 0.00014 28.0 0.7 46 131-179 24-75 (90)
185 3mjh_B Early endosome antigen 52.2 4.4 0.00015 22.8 0.7 10 173-182 7-16 (34)
186 1m3v_A FLIN4, fusion of the LI 51.5 16 0.00056 25.6 3.9 49 134-184 33-82 (122)
187 2dlo_A Thyroid receptor-intera 51.3 10 0.00036 24.4 2.6 41 132-184 14-54 (81)
188 1m3v_A FLIN4, fusion of the LI 51.3 15 0.0005 25.9 3.7 40 132-182 4-43 (122)
189 2cuq_A Four and A half LIM dom 51.1 13 0.00045 23.8 3.1 39 133-183 15-53 (80)
190 3kv5_D JMJC domain-containing 50.9 4.9 0.00017 35.9 1.2 48 132-180 36-88 (488)
191 1x3h_A Leupaxin; paxillin fami 50.6 11 0.00038 24.1 2.7 40 133-184 15-54 (80)
192 2pv0_B DNA (cytosine-5)-methyl 50.5 11 0.00037 32.7 3.2 46 130-179 90-147 (386)
193 2ehe_A Four and A half LIM dom 49.5 11 0.00038 24.3 2.5 41 133-183 15-55 (82)
194 2fiy_A Protein FDHE homolog; F 49.5 4.1 0.00014 34.2 0.4 49 131-180 180-231 (309)
195 2iyb_E Testin, TESS, TES; LIM 49.4 16 0.00055 22.5 3.2 41 134-184 3-45 (65)
196 6rxn_A Rubredoxin; electron tr 49.2 10 0.00035 22.6 2.1 27 154-180 9-39 (46)
197 2a20_A Regulating synaptic mem 49.1 4 0.00014 25.9 0.2 49 130-179 6-59 (62)
198 2d8v_A Zinc finger FYVE domain 48.9 17 0.00057 23.5 3.1 33 130-167 5-38 (67)
199 1yuz_A Nigerythrin; rubrythrin 48.6 5.3 0.00018 31.3 0.9 22 152-180 174-195 (202)
200 2rgt_A Fusion of LIM/homeobox 48.2 21 0.00071 26.6 4.2 10 173-182 95-104 (169)
201 1rut_X Flinc4, fusion protein 47.6 17 0.00057 27.6 3.7 37 135-181 71-107 (188)
202 1b8t_A Protein (CRP1); LIM dom 47.5 14 0.00047 28.2 3.2 39 133-182 115-153 (192)
203 1lko_A Rubrerythrin all-iron(I 47.4 9.8 0.00034 29.4 2.3 23 152-180 158-180 (191)
204 2lcq_A Putative toxin VAPC6; P 45.5 8.3 0.00028 28.8 1.6 26 151-182 134-159 (165)
205 3pwf_A Rubrerythrin; non heme 44.3 13 0.00044 28.3 2.5 22 152-180 141-162 (170)
206 1j2o_A FLIN2, fusion of rhombo 42.6 24 0.00084 24.3 3.6 14 156-169 52-65 (114)
207 2xjy_A Rhombotin-2; oncoprotei 42.4 19 0.00064 25.4 3.0 27 156-182 51-77 (131)
208 2jtn_A LIM domain-binding prot 42.3 30 0.001 26.0 4.4 27 156-184 106-132 (182)
209 2csz_A Synaptotagmin-like prot 42.1 23 0.0008 23.5 3.2 49 130-178 22-71 (76)
210 2jny_A Uncharacterized BCR; st 41.2 8.2 0.00028 25.0 0.8 18 165-182 4-21 (67)
211 4bbq_A Lysine-specific demethy 40.7 6.7 0.00023 27.5 0.3 45 135-179 61-113 (117)
212 2pk7_A Uncharacterized protein 39.4 8.8 0.0003 24.9 0.7 17 166-182 3-19 (69)
213 2jrp_A Putative cytoplasmic pr 38.3 5 0.00017 27.1 -0.6 11 134-144 3-13 (81)
214 2rgt_A Fusion of LIM/homeobox 38.1 28 0.00097 25.8 3.6 46 133-184 33-78 (169)
215 2vrw_B P95VAV, VAV1, proto-onc 36.3 37 0.0013 28.7 4.4 37 130-166 354-391 (406)
216 2jtn_A LIM domain-binding prot 36.3 23 0.0008 26.6 2.9 40 134-183 120-159 (182)
217 1x4i_A Inhibitor of growth pro 36.3 13 0.00043 24.1 1.1 47 132-181 5-56 (70)
218 2kdx_A HYPA, hydrogenase/ureas 34.3 23 0.00077 25.0 2.3 24 151-180 75-99 (119)
219 2jr6_A UPF0434 protein NMA0874 33.0 8.2 0.00028 25.0 -0.2 16 167-182 4-19 (68)
220 2xqn_T Testin, TESS; metal-bin 31.6 46 0.0016 23.1 3.6 45 134-183 31-75 (126)
221 2kpi_A Uncharacterized protein 31.6 8.5 0.00029 23.9 -0.3 17 166-182 5-21 (56)
222 1rut_X Flinc4, fusion protein 31.1 29 0.001 26.2 2.7 49 134-184 33-82 (188)
223 2jne_A Hypothetical protein YF 30.4 8.9 0.00031 26.8 -0.4 40 134-182 33-72 (101)
224 2ku7_A MLL1 PHD3-CYP33 RRM chi 29.1 49 0.0017 22.9 3.5 28 154-181 7-45 (140)
225 2js4_A UPF0434 protein BB2007; 29.0 9 0.00031 25.0 -0.6 16 167-182 4-19 (70)
226 2hf1_A Tetraacyldisaccharide-1 28.7 8.3 0.00028 25.0 -0.8 11 172-182 9-19 (68)
227 1l8d_A DNA double-strand break 28.3 15 0.00051 25.5 0.5 12 171-182 47-58 (112)
228 3vhs_A ATPase wrnip1; zinc fin 24.5 18 0.00061 18.9 0.2 11 173-183 8-18 (29)
229 1loi_A Cyclic 3',5'-AMP specif 24.4 8.1 0.00028 19.7 -1.1 13 157-169 5-17 (26)
230 2i50_A Ubiquitin carboxyl-term 22.8 15 0.0005 26.7 -0.5 28 153-180 5-37 (126)
231 1dx8_A Rubredoxin; electron tr 21.8 33 0.0011 22.2 1.2 7 173-179 42-48 (70)
232 2i5o_A DNA polymerase ETA; zin 21.6 26 0.0009 20.1 0.6 14 3-16 25-38 (39)
233 1yk4_A Rubredoxin, RD; electro 21.3 43 0.0015 20.3 1.6 8 173-180 37-44 (52)
234 1lv3_A Hypothetical protein YA 20.2 27 0.00093 22.6 0.5 11 172-182 10-20 (68)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.76 E-value=1.7e-18 Score=122.88 Aligned_cols=79 Identities=30% Similarity=0.597 Sum_probs=69.0
Q ss_pred CccCCCCCHHHHHhhcCcccCCCCCCCCCCCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccC
Q 044318 103 GQEKRGLSLNQISTCLHACKSPPADGTKSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEAS 182 (195)
Q Consensus 103 g~~~~gls~~~i~~~l~~~~~~~~~~~~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~ 182 (195)
+...+|++.+.+ ..++...+............|+||++.|..+..++.+ +|+|.||..||.+|++.+.+||+||+.+.
T Consensus 11 ~~~~~~~s~~~i-~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l-~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 11 MVANPPASKESI-DALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATEL-PCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SSCCCCCCHHHH-HTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEE-TTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CcCCCCCCHHHH-HhCCCeeecccccccCCCCCCcccChhhcCCCcEEec-CCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 445678999999 8999888877665666778999999999988888888 89999999999999999999999999886
Q ss_pred C
Q 044318 183 P 183 (195)
Q Consensus 183 ~ 183 (195)
+
T Consensus 89 ~ 89 (91)
T 2l0b_A 89 P 89 (91)
T ss_dssp C
T ss_pred C
Confidence 5
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=3.2e-17 Score=111.87 Aligned_cols=68 Identities=29% Similarity=0.844 Sum_probs=56.2
Q ss_pred hhcCcccCCCCCCCCCCCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCCCC
Q 044318 116 TCLHACKSPPADGTKSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPPK 185 (195)
Q Consensus 116 ~~l~~~~~~~~~~~~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~~ 185 (195)
..++..++.... .......|+||++.|..+..++.+ +|+|.||..||.+|++.+.+||+||+.+.+..
T Consensus 7 ~~lp~~~~~~~~-~~~~~~~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 74 (75)
T 1x4j_A 7 GQLPSYRFNPNN-HQSEQTLCVVCMCDFESRQLLRVL-PCNHEFHAKCVDKWLKANRTCPICRADSGPSS 74 (75)
T ss_dssp SSCCCEEBCSSS-CSSSCCEETTTTEECCBTCEEEEE-TTTEEEETTHHHHHHHHCSSCTTTCCCCCCCC
T ss_pred hhCCcEEecCcc-ccCCCCCCeECCcccCCCCeEEEE-CCCCHhHHHHHHHHHHcCCcCcCcCCcCCCCC
Confidence 455666665543 455678999999999988887888 89999999999999999999999999987653
No 3
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.64 E-value=4.2e-16 Score=106.86 Aligned_cols=61 Identities=33% Similarity=0.818 Sum_probs=52.1
Q ss_pred CCCCCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCCCCCCCcc
Q 044318 129 TKSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPPKNHNNA 190 (195)
Q Consensus 129 ~~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~~~~~~~ 190 (195)
.......|+||++.|..+..++.+ +|+|.||..||.+|++.+.+||+||+.+......+++
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 71 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQL-PCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNP 71 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEEC-TTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEe-CCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCCC
Confidence 344567999999999988777777 9999999999999999999999999999876655443
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=5e-16 Score=105.46 Aligned_cols=60 Identities=22% Similarity=0.746 Sum_probs=51.7
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCCCCCCCcc
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPPKNHNNA 190 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~~~~~~~ 190 (195)
......|+||++.|..+..++.+ +|+|.||..||.+|++.+.+||+||+++........+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 71 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGIC-PCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLSGP 71 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEE-TTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCSCCCS
T ss_pred CCCCCCCcCCCcccCCCCcEEEc-CCCCEecHHHHHHHHHcCCcCCCcCcccccccccCCC
Confidence 44567999999999988888877 9999999999999999999999999999776555443
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.63 E-value=2.7e-16 Score=100.74 Aligned_cols=52 Identities=33% Similarity=0.780 Sum_probs=46.1
Q ss_pred CCCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccC
Q 044318 131 SGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEAS 182 (195)
Q Consensus 131 ~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~ 182 (195)
.....|+||++.|..++.++.+++|+|.||..||.+|++.+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3567899999999988887888449999999999999999999999998874
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=1e-15 Score=102.52 Aligned_cols=56 Identities=38% Similarity=0.902 Sum_probs=48.5
Q ss_pred CCCCCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCCCC
Q 044318 129 TKSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPPK 185 (195)
Q Consensus 129 ~~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~~ 185 (195)
.......|+||++.|..+..++.+ +|+|.||..||.+|++.+.+||+||+.+....
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRL-PCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEEC-TTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred cCCCCCCCeeCCccccCCCcEEEe-CCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 345667899999999877777777 99999999999999999999999999987543
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.59 E-value=1e-15 Score=97.92 Aligned_cols=52 Identities=35% Similarity=0.756 Sum_probs=43.9
Q ss_pred CCCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccC
Q 044318 131 SGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEAS 182 (195)
Q Consensus 131 ~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~ 182 (195)
.....|+||++.|..+.....+++|+|.||..||.+|++.+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 3567899999999765544444599999999999999999999999999875
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.7e-15 Score=105.14 Aligned_cols=53 Identities=28% Similarity=0.762 Sum_probs=43.9
Q ss_pred CCCcccccccccccC-----------CceeEEecCccceechhhHHHHhhcCCCCCccccccCC
Q 044318 131 SGIDRCVICQVEYEE-----------GESIVALLPCEHLYHSECISNWLQIKKICPICSTEASP 183 (195)
Q Consensus 131 ~~~~~C~ICl~~f~~-----------~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~ 183 (195)
.....|+||++.|.. ++.++.+++|+|.||..||.+|++.+++||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 356778888888854 34566675799999999999999999999999998754
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.58 E-value=2.8e-15 Score=109.84 Aligned_cols=56 Identities=21% Similarity=0.463 Sum_probs=44.3
Q ss_pred CCcccccccccccCCc--------------eeEEecCccceechhhHHHHh-----hcCCCCCccccccCCCCCC
Q 044318 132 GIDRCVICQVEYEEGE--------------SIVALLPCEHLYHSECISNWL-----QIKKICPICSTEASPPKNH 187 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~~--------------~~~~L~~C~H~FH~~CI~~Wl-----~~~~sCPvCR~~l~~~~~~ 187 (195)
....|+||++.|..+. .++.+++|+|.||..||..|+ +.+.+||+||+.+......
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~ 98 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGT 98 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCC
Confidence 3569999999996643 344455999999999999999 4567999999988755443
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.52 E-value=5.8e-15 Score=99.06 Aligned_cols=57 Identities=32% Similarity=0.676 Sum_probs=46.8
Q ss_pred CCCCcccccccccccCC----ceeEEecCccceechhhHHHHhhcCCCCCccccccCCCCCC
Q 044318 130 KSGIDRCVICQVEYEEG----ESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPPKNH 187 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~----~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~~~~ 187 (195)
......|+||++.|..+ ..++.+ +|||.||..||.+|++.+.+||+||+.+......
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 67 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHcCCCCCCCCCccChhhee
Confidence 44678999999998664 333444 9999999999999999999999999999866543
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=9.5e-15 Score=97.25 Aligned_cols=54 Identities=31% Similarity=0.671 Sum_probs=44.4
Q ss_pred CCCCCcccccccccccCC----ceeEEecCccceechhhHHHHhhcCCCCCccccccCC
Q 044318 129 TKSGIDRCVICQVEYEEG----ESIVALLPCEHLYHSECISNWLQIKKICPICSTEASP 183 (195)
Q Consensus 129 ~~~~~~~C~ICl~~f~~~----~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~ 183 (195)
.......|+||++.|... ..++.+ +|||.||..||.+|++.+.+||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 345678899999999764 223444 999999999999999999999999998754
No 12
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2.2e-14 Score=99.58 Aligned_cols=65 Identities=26% Similarity=0.620 Sum_probs=50.1
Q ss_pred CCCCCCCCCCCcccccccccccCCceeEEecCcc-----ceechhhHHHHhhcC--CCCCccccccCCCCCCCc
Q 044318 123 SPPADGTKSGIDRCVICQVEYEEGESIVALLPCE-----HLYHSECISNWLQIK--KICPICSTEASPPKNHNN 189 (195)
Q Consensus 123 ~~~~~~~~~~~~~C~ICl~~f~~~~~~~~L~~C~-----H~FH~~CI~~Wl~~~--~sCPvCR~~l~~~~~~~~ 189 (195)
+............|.||++.|..+..+ .+ ||+ |.||..||.+|+..+ .+||+||..+.......+
T Consensus 5 ~s~~s~~~~~~~~C~IC~~~~~~~~~l-~~-pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P 76 (80)
T 2d8s_A 5 SSGTSITPSSQDICRICHCEGDDESPL-IT-PCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSG 76 (80)
T ss_dssp CCCCCCCCTTSCCCSSSCCCCCSSSCE-EC-SSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCC
T ss_pred cCCCCCCCCCCCCCeEcCccccCCCee-Ee-ccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCC
Confidence 333344556678999999999877665 35 896 999999999999766 489999999976654433
No 13
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.50 E-value=1.4e-14 Score=105.75 Aligned_cols=51 Identities=33% Similarity=0.735 Sum_probs=42.3
Q ss_pred CCcccccccccccCCc--------------eeEEecCccceechhhHHHHhhcCCCCCccccccC
Q 044318 132 GIDRCVICQVEYEEGE--------------SIVALLPCEHLYHSECISNWLQIKKICPICSTEAS 182 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~~--------------~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~ 182 (195)
..+.|+||++.|...- ..+.+++|+|.||..||.+||+.+.+||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 5688999999997541 12344499999999999999999999999999864
No 14
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=3.6e-14 Score=95.92 Aligned_cols=58 Identities=17% Similarity=0.411 Sum_probs=47.9
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCCCCCCCcc
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPPKNHNNA 190 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~~~~~~~ 190 (195)
......|+||++.|..+ +.+++|||.||..||.+|++.+.+||+||+.+.......++
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 12 LTPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp CCGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCCC
T ss_pred cCCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccccccC
Confidence 34567899999999875 33449999999999999999999999999999876655543
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.48 E-value=1.4e-14 Score=95.01 Aligned_cols=53 Identities=28% Similarity=0.669 Sum_probs=44.2
Q ss_pred CCcccccccccccCC----ceeEEecCccceechhhHHHHhhcCCCCCccccccCCCC
Q 044318 132 GIDRCVICQVEYEEG----ESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPPK 185 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~----~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~~ 185 (195)
+...|+||++.|..+ ..++.+ +|||.||..||.+|++.+.+||+||+++....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 457899999999753 333455 99999999999999999999999999987653
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=3.5e-14 Score=95.69 Aligned_cols=52 Identities=25% Similarity=0.596 Sum_probs=44.0
Q ss_pred CCCCCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCCC
Q 044318 129 TKSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPP 184 (195)
Q Consensus 129 ~~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~ 184 (195)
.......|+||++.+... +.+ +|+|.||..||.+|++.+.+||+||+.+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~---~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHP---VSL-PCKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSSSCCBCSSSSSBCSSE---EEE-TTTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred cCCCCCCCccCCcccCCC---EEc-cCCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 344667899999998765 445 9999999999999999999999999988643
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=4.7e-14 Score=94.56 Aligned_cols=51 Identities=27% Similarity=0.780 Sum_probs=44.2
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCCCC
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPPK 185 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~~ 185 (195)
......|+||++.+.. +.+ +|+|.||..||.+|++.+.+||+||+++....
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LIL-PCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEE-TTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCCeeCCcCccC----ccc-CCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 4456799999999876 455 99999999999999999999999999987554
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.45 E-value=5.8e-14 Score=93.53 Aligned_cols=50 Identities=30% Similarity=0.784 Sum_probs=42.5
Q ss_pred CCCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCC
Q 044318 131 SGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASP 183 (195)
Q Consensus 131 ~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~ 183 (195)
.....|+||++.+..+ .+.+ +|||.||..||.+|++.+.+||+||+++..
T Consensus 3 ~~~~~C~IC~~~~~~~--~~~~-~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNY--SMAL-PCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSC--EEET-TTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCC--cEec-CCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 3467899999998754 2344 999999999999999999999999998864
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.5e-13 Score=94.57 Aligned_cols=56 Identities=25% Similarity=0.511 Sum_probs=45.3
Q ss_pred CCCCCcccccccccccCCceeEEecCccceechhhHHHHhhcC---CCCCccccccCCC
Q 044318 129 TKSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIK---KICPICSTEASPP 184 (195)
Q Consensus 129 ~~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~---~sCPvCR~~l~~~ 184 (195)
.......|+||++.|.......++++|||.||..||.+|++.+ ..||+||+.+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 3445678999999998865423334999999999999999875 7899999988654
No 20
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.42 E-value=6.8e-14 Score=106.17 Aligned_cols=48 Identities=35% Similarity=0.839 Sum_probs=41.7
Q ss_pred CcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCCC
Q 044318 133 IDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPP 184 (195)
Q Consensus 133 ~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~ 184 (195)
...|+||++.|..+ +.+ +|||.||..||..|+..+.+||+||+++...
T Consensus 53 ~~~C~iC~~~~~~~---~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTL-NCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSSE---EEE-TTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cCCCcccCcccCCc---eEC-CCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 35799999999765 345 9999999999999999999999999998654
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.42 E-value=2.8e-13 Score=92.08 Aligned_cols=53 Identities=28% Similarity=0.636 Sum_probs=43.1
Q ss_pred CCCCcccccccccccCCceeEEecC-ccceechhhHHHHhhcC--CCCCccccccCCCCC
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLP-CEHLYHSECISNWLQIK--KICPICSTEASPPKN 186 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~-C~H~FH~~CI~~Wl~~~--~sCPvCR~~l~~~~~ 186 (195)
......|+||++.|..+ +.+ + |||.||..||..|++.+ .+||+||+++...+.
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2yur_A 12 IPDELLCLICKDIMTDA---VVI-PCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 67 (74)
T ss_dssp SCGGGSCSSSCCCCTTC---EEC-SSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTT
T ss_pred CCCCCCCcCCChHHhCC---eEc-CCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccc
Confidence 34567899999999876 334 7 99999999999999865 689999998665443
No 22
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=2e-13 Score=94.09 Aligned_cols=59 Identities=20% Similarity=0.460 Sum_probs=48.0
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHhhc------CCCCCccccccCCCCCCCcccc
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQI------KKICPICSTEASPPKNHNNAIT 192 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~------~~sCPvCR~~l~~~~~~~~~~~ 192 (195)
......|+||++.|..+ +. ++|||.||..||..|++. ...||+||+.+......++...
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l 80 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQP---LS-LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHV 80 (85)
T ss_dssp CCCCCCCTTTCSCCSSC---BC-CSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCC
T ss_pred ccCCCCCCCCCcccCCc---ee-CCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHH
Confidence 34567999999999775 23 499999999999999977 7899999999987666655443
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.6e-13 Score=94.62 Aligned_cols=49 Identities=22% Similarity=0.577 Sum_probs=42.3
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccC
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEAS 182 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~ 182 (195)
......|+||+..|..+ +. ++|||.||..||.+|++...+||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~-~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNP---VV-TKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSE---EE-CTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCe---eE-ccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34567899999999775 33 499999999999999999999999999986
No 24
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.41 E-value=2.5e-13 Score=93.62 Aligned_cols=58 Identities=24% Similarity=0.399 Sum_probs=46.9
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHhhc------CCCCCccccccCCCCCCCccc
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQI------KKICPICSTEASPPKNHNNAI 191 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~------~~sCPvCR~~l~~~~~~~~~~ 191 (195)
......|+||+..|..+ +. ++|+|.||..||..|+.. ...||+||..+......++..
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~ 79 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP---VS-ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLH 79 (85)
T ss_dssp CCTTTSCTTTCSCCSSC---EE-CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSC
T ss_pred CccCCCCcCCChhhCcc---ee-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHH
Confidence 34567999999999876 23 499999999999999987 678999999998765554443
No 25
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.41 E-value=6.1e-14 Score=95.89 Aligned_cols=58 Identities=26% Similarity=0.404 Sum_probs=46.5
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHhhc-------CCCCCccccccCCCCCCCccc
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQI-------KKICPICSTEASPPKNHNNAI 191 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~-------~~sCPvCR~~l~~~~~~~~~~ 191 (195)
......|+||++.|..+ +. ++|||.||..||.+|++. ...||+||..+......++..
T Consensus 9 ~~~~~~C~IC~~~~~~p---~~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~ 73 (79)
T 2egp_A 9 VQEEVTCPICLELLTEP---LS-LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQH 73 (79)
T ss_dssp CCCCCEETTTTEECSSC---CC-CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSS
T ss_pred cccCCCCcCCCcccCCe---eE-CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHH
Confidence 34568899999999876 23 499999999999999976 578999999998765544443
No 26
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.41 E-value=2.5e-14 Score=106.16 Aligned_cols=52 Identities=33% Similarity=0.697 Sum_probs=1.2
Q ss_pred CCcccccccccccCCc--------------eeEEecCccceechhhHHHHhhcCCCCCccccccCC
Q 044318 132 GIDRCVICQVEYEEGE--------------SIVALLPCEHLYHSECISNWLQIKKICPICSTEASP 183 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~~--------------~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~ 183 (195)
..+.|+||++.|.... ..+.+++|+|.||..||.+||+.+.+||+||+++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 5689999999997531 123335899999999999999999999999998653
No 27
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.40 E-value=1.2e-13 Score=94.55 Aligned_cols=55 Identities=22% Similarity=0.355 Sum_probs=45.6
Q ss_pred CCCcccccccccccCCceeEEecCccceechhhHHHHhhc-CCCCCccccccCCCCCCCc
Q 044318 131 SGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQI-KKICPICSTEASPPKNHNN 189 (195)
Q Consensus 131 ~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~-~~sCPvCR~~l~~~~~~~~ 189 (195)
.....|+||++.|..+ +.+ +|||.||..||.+|++. +.+||+||+++......++
T Consensus 6 ~~~~~C~IC~~~~~~P---v~~-~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n 61 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP---VIV-STGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPN 61 (78)
T ss_dssp SSSSSCTTTSCCCSSE---EEE-TTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEEC
T ss_pred cccCCCCCccccccCC---EEc-CCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccC
Confidence 4567999999999876 334 99999999999999987 7899999999976655444
No 28
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.1e-13 Score=90.54 Aligned_cols=52 Identities=17% Similarity=0.409 Sum_probs=42.9
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHh-hcCCCCCccccccCCCC
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWL-QIKKICPICSTEASPPK 185 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl-~~~~sCPvCR~~l~~~~ 185 (195)
......|+||++.+..+ +.++|||.||..||.+|+ +...+||+||+++....
T Consensus 12 ~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSP----KQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCCEECTTTCCEESSC----CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CCcCCCCCCCChHhcCe----eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 34567899999999876 224999999999999999 45678999999987653
No 29
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=4.7e-13 Score=90.18 Aligned_cols=52 Identities=23% Similarity=0.421 Sum_probs=42.7
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHhh---cCCCCCccccccCCCC
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQ---IKKICPICSTEASPPK 185 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~---~~~sCPvCR~~l~~~~ 185 (195)
......|+||++.|..+ +.+ +|||.||..||..|++ ....||+||+.+....
T Consensus 17 ~~~~~~C~IC~~~~~~~---~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 17 LQEEVICPICLDILQKP---VTI-DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCBCTTTCSBCSSE---EEC-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CccCCEeccCCcccCCe---EEc-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 44567999999998864 344 9999999999999996 4568999999886543
No 30
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.39 E-value=1.7e-13 Score=90.69 Aligned_cols=55 Identities=18% Similarity=0.401 Sum_probs=43.8
Q ss_pred Ccccccccc-cccCCceeEEecCccceechhhHHHHhhc-CCCCCccccccCCCCCC
Q 044318 133 IDRCVICQV-EYEEGESIVALLPCEHLYHSECISNWLQI-KKICPICSTEASPPKNH 187 (195)
Q Consensus 133 ~~~C~ICl~-~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~-~~sCPvCR~~l~~~~~~ 187 (195)
...|+||++ .|..+.....+++|||.||..||.+|+.. ...||+||+.+......
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 59 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR 59 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccce
Confidence 568999999 77776554444599999999999999754 46899999998765443
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.38 E-value=6.5e-14 Score=100.72 Aligned_cols=53 Identities=25% Similarity=0.541 Sum_probs=43.7
Q ss_pred CCcccccccccccCCceeEEecCccceechhhHHHHhhcC-CCCCccccccCCCCCC
Q 044318 132 GIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIK-KICPICSTEASPPKNH 187 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~-~sCPvCR~~l~~~~~~ 187 (195)
....|+||++.|..+ +.+++|||.||..||.+|++.+ .+||+||+++......
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~ 74 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELV 74 (100)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCE
T ss_pred CCCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhH
Confidence 357899999999764 3425999999999999999887 6999999998755443
No 32
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=6.3e-13 Score=90.89 Aligned_cols=57 Identities=21% Similarity=0.459 Sum_probs=46.1
Q ss_pred CCCCCcccccccccccCCceeEEecCccceechhhHHHHhhcC--CCCCccccccCCCCCCC
Q 044318 129 TKSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIK--KICPICSTEASPPKNHN 188 (195)
Q Consensus 129 ~~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~--~sCPvCR~~l~~~~~~~ 188 (195)
-......|+||.+.|..+.. ...|+|.||..||.+||+.+ .+||+||+.+.......
T Consensus 11 y~~~i~~C~IC~~~i~~g~~---C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~~ 69 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQGQS---CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKS 69 (74)
T ss_dssp CSSSSCBCSSSCCBCSSSEE---CSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCCC
T ss_pred ccCCCCcCcchhhHcccCCc---cCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCCC
Confidence 34566899999999987643 23899999999999999887 89999999987554443
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.35 E-value=1.5e-13 Score=98.24 Aligned_cols=52 Identities=31% Similarity=0.685 Sum_probs=43.5
Q ss_pred CcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCCCCCC
Q 044318 133 IDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPPKNH 187 (195)
Q Consensus 133 ~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~~~~ 187 (195)
...|+||++.|..+ +.+++|||.||..||..|+..+.+||+||..+......
T Consensus 22 ~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~ 73 (99)
T 2y43_A 22 LLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLK 73 (99)
T ss_dssp HTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCE
T ss_pred CCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCC
Confidence 46899999999874 23348999999999999999999999999998764443
No 34
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.33 E-value=9.5e-13 Score=97.86 Aligned_cols=48 Identities=19% Similarity=0.481 Sum_probs=40.8
Q ss_pred CCcccccccccccCCceeEEecCccceechhhHHHHhhcC-CCCCccccccCC
Q 044318 132 GIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIK-KICPICSTEASP 183 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~-~sCPvCR~~l~~ 183 (195)
....|+||+..|..+ +.+ +|||.||..||..|+..+ ..||+||+.+..
T Consensus 51 ~~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRP---ITT-VCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSE---EEC-TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCc---EEe-eCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 346899999999865 344 999999999999999855 499999999976
No 35
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.31 E-value=6.9e-13 Score=98.58 Aligned_cols=55 Identities=31% Similarity=0.668 Sum_probs=45.8
Q ss_pred CCCcccccccccccCC----ceeEEecCccceechhhHHHHhhcCCCCCccccccCCCCC
Q 044318 131 SGIDRCVICQVEYEEG----ESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPPKN 186 (195)
Q Consensus 131 ~~~~~C~ICl~~f~~~----~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~~~ 186 (195)
.....|+||++.|..+ ..++.+ +|||.||..||.+|++.+.+||+||+.+.....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEE-TTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEec-CCCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 3567899999999764 333455 999999999999999999999999999876544
No 36
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.31 E-value=8.9e-13 Score=92.84 Aligned_cols=49 Identities=29% Similarity=0.632 Sum_probs=41.0
Q ss_pred CCCCcccccccccccCCceeEEecC-ccceechhhHHHHhhcC--CCCCccccccC
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLP-CEHLYHSECISNWLQIK--KICPICSTEAS 182 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~-C~H~FH~~CI~~Wl~~~--~sCPvCR~~l~ 182 (195)
......|+||++.|..+ +.+ + |||.||..||..|+..+ ..||+||..+.
T Consensus 10 ~~~~~~C~IC~~~~~~p---~~~-~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDA---VVI-PCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECSSC---EEC-TTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhcCc---eEC-CCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 44568999999999876 344 8 99999999999999644 58999999874
No 37
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.31 E-value=8.4e-13 Score=95.96 Aligned_cols=53 Identities=26% Similarity=0.605 Sum_probs=43.3
Q ss_pred CcccccccccccCCceeEEecCccceechhhHHHHhhcCC---CCCccccccCCCCCCCc
Q 044318 133 IDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKK---ICPICSTEASPPKNHNN 189 (195)
Q Consensus 133 ~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~---sCPvCR~~l~~~~~~~~ 189 (195)
...|+||++.|..+ +.++|||.||..||..|+..+. .||+||..+.......+
T Consensus 21 ~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~ 76 (112)
T 1jm7_A 21 ILECPICLELIKEP----VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQES 76 (112)
T ss_dssp HTSCSSSCCCCSSC----CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCC
T ss_pred CCCCcccChhhcCe----EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCcc
Confidence 45899999999776 2249999999999999998654 89999999887655444
No 38
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=5e-12 Score=82.92 Aligned_cols=44 Identities=25% Similarity=0.491 Sum_probs=37.2
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHhh---cCCCCCcc
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQ---IKKICPIC 177 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~---~~~sCPvC 177 (195)
......|+||++.|..+ +.+ +|||.||..||.+|++ ...+||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKP---VTI-DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSC---EEC-TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCe---EEe-CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 44667999999999875 344 9999999999999997 45689998
No 39
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.28 E-value=1.5e-12 Score=94.53 Aligned_cols=50 Identities=26% Similarity=0.688 Sum_probs=42.9
Q ss_pred CCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCCC
Q 044318 132 GIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPP 184 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~ 184 (195)
....|+||+..|..+ +.+++|||.||..||..|+..+.+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 457899999999764 33349999999999999999999999999998764
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.25 E-value=3.3e-12 Score=99.38 Aligned_cols=49 Identities=24% Similarity=0.511 Sum_probs=41.2
Q ss_pred CCcccccccccccCCceeEEecCccceechhhHHHHhhc-CCCCCccccccCC
Q 044318 132 GIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQI-KKICPICSTEASP 183 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~-~~sCPvCR~~l~~ 183 (195)
....|+||+..|..+ +.+++|||.||..||..|+.. +..||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNT---MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhCc---CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 345899999999874 333499999999999999987 7889999999854
No 41
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=5.8e-12 Score=80.93 Aligned_cols=44 Identities=25% Similarity=0.719 Sum_probs=36.5
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHh---hcCCCCCcc
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWL---QIKKICPIC 177 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl---~~~~sCPvC 177 (195)
......|+||++.+..+ ++++|||.||..||.+|+ +.+.+||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP----VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSC----CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCcc----EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34567999999999876 334999999999999995 456789998
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.25 E-value=2.3e-12 Score=99.26 Aligned_cols=48 Identities=23% Similarity=0.467 Sum_probs=41.3
Q ss_pred CcccccccccccCCceeEEecCccceechhhHHHHhhcCC-CCCccccccCCC
Q 044318 133 IDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKK-ICPICSTEASPP 184 (195)
Q Consensus 133 ~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~-sCPvCR~~l~~~ 184 (195)
...|+||++.|..+ +. ++|||.||..||..|+.... .||+||..+...
T Consensus 78 ~~~C~IC~~~~~~p---v~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQP---VT-TECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSE---EE-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCC---EE-cCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 46899999999876 23 49999999999999998764 899999999866
No 43
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.23 E-value=2.4e-12 Score=95.58 Aligned_cols=55 Identities=31% Similarity=0.670 Sum_probs=44.9
Q ss_pred CCCCcccccccccccCC----ceeEEecCccceechhhHHHHhhcCCCCCccccccCCCC
Q 044318 130 KSGIDRCVICQVEYEEG----ESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPPK 185 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~----~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~~ 185 (195)
......|+||++.|... ...+.+ +|||.||..||.+|++.+++||+||+.+....
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEE-TTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCCccccccccCcceEeC-CCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 34567899999998753 223444 99999999999999999999999999987543
No 44
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.20 E-value=7.6e-12 Score=90.18 Aligned_cols=55 Identities=11% Similarity=0.006 Sum_probs=46.9
Q ss_pred CCCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCCCCCCCc
Q 044318 131 SGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPPKNHNN 189 (195)
Q Consensus 131 ~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~~~~~~ 189 (195)
.....|+||+..|.++ +.++|||.|++.||.+|+..+.+||+||.++......++
T Consensus 27 p~~~~CpI~~~~m~dP----V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn 81 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP----VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPV 81 (100)
T ss_dssp STTTBCTTTCSBCSSE----EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEEC
T ss_pred cHhhCCcCccCcccCC----eECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceEC
Confidence 3567999999999987 334899999999999999988999999999987655544
No 45
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.20 E-value=5.5e-12 Score=88.17 Aligned_cols=55 Identities=11% Similarity=-0.012 Sum_probs=46.4
Q ss_pred CCCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCCCCCCCc
Q 044318 131 SGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPPKNHNN 189 (195)
Q Consensus 131 ~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~~~~~~ 189 (195)
.....|+||++.|.++ +.++|||.|++.||.+|+..+.+||+||.++......++
T Consensus 12 p~~~~CpI~~~~m~dP----V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn 66 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP----VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPV 66 (85)
T ss_dssp CTTTBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEEC
T ss_pred chheECcccCchhcCC----eECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchH
Confidence 3568999999999987 445899999999999999988999999999876554443
No 46
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.19 E-value=4.4e-12 Score=92.96 Aligned_cols=48 Identities=29% Similarity=0.611 Sum_probs=40.8
Q ss_pred CCcccccccccccCCceeEEecCccceechhhHHHHhhc-CCCCCccccccCC
Q 044318 132 GIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQI-KKICPICSTEASP 183 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~-~~sCPvCR~~l~~ 183 (195)
....|+||+..|..+ +.+ +|||.||..||..|+.. ...||+||+.+..
T Consensus 14 ~~~~C~iC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVEP---VTL-PCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSSC---EEC-TTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCce---eEc-CCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 456899999999875 344 99999999999999976 6789999998853
No 47
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.19 E-value=1.7e-11 Score=84.50 Aligned_cols=57 Identities=16% Similarity=0.275 Sum_probs=42.9
Q ss_pred CCCCcccccccccccCCcee-EEecCccceechhhHHHHhh-cCCCCCccccccCCCCCC
Q 044318 130 KSGIDRCVICQVEYEEGESI-VALLPCEHLYHSECISNWLQ-IKKICPICSTEASPPKNH 187 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~-~~L~~C~H~FH~~CI~~Wl~-~~~sCPvCR~~l~~~~~~ 187 (195)
......|+||++.+...+.. ..+ +|||.||..||..|+. ....||+||+++......
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPC-TCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred cccCCcCCccCccCcccccccccc-CCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 34567899999988643322 222 5999999999999984 457899999998765543
No 48
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.19 E-value=4.9e-12 Score=93.33 Aligned_cols=52 Identities=23% Similarity=0.473 Sum_probs=43.4
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHhhcCC-CCCccccccCCCC
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKK-ICPICSTEASPPK 185 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~-sCPvCR~~l~~~~ 185 (195)
......|+||+..|..+ +.+ +|||.||..||..|++.+. +||+||..+....
T Consensus 15 ~~~~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 15 LESKYECPICLMALREA---VQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp CCGGGBCTTTCSBCSSE---EEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCcCChhhcCe---EEC-CcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 44567999999999876 344 9999999999999998765 9999999987643
No 49
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.19 E-value=9.5e-12 Score=80.17 Aligned_cols=49 Identities=33% Similarity=0.566 Sum_probs=40.2
Q ss_pred CCCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCCCCC
Q 044318 131 SGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPPKN 186 (195)
Q Consensus 131 ~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~~~ 186 (195)
.....|+||+..|..+ +.++|||.||..||..| ...||+||+.+..+..
T Consensus 4 ~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~ 52 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP----KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGAD 52 (56)
T ss_dssp CCCSSCSSSCSSCBCC----SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCSS
T ss_pred ccCCCceEeCCccCCe----EEcCCCCcccHHHHccC---CCCCCcCCcEeecCCc
Confidence 4567899999999876 33499999999999885 6789999999876543
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.18 E-value=8e-12 Score=91.69 Aligned_cols=50 Identities=28% Similarity=0.618 Sum_probs=42.1
Q ss_pred CcccccccccccCCceeEEecCccceechhhHHHHhhc-CCCCCccccccCCCCC
Q 044318 133 IDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQI-KKICPICSTEASPPKN 186 (195)
Q Consensus 133 ~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~-~~sCPvCR~~l~~~~~ 186 (195)
...|+||++.|..+ +. ++|||.||..||.+|++. ..+||+||.++.....
T Consensus 23 ~~~C~IC~~~~~~p---~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 23 SISCQICEHILADP---VE-TSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp HTBCTTTCSBCSSE---EE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCcHhcCc---EE-cCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence 46899999999765 33 499999999999999986 6799999999876543
No 51
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.18 E-value=6.3e-12 Score=92.59 Aligned_cols=52 Identities=33% Similarity=0.615 Sum_probs=43.1
Q ss_pred CCcccccccccccCCceeEEec-CccceechhhHHHHhhcCCCCCccccccCCCCCCCc
Q 044318 132 GIDRCVICQVEYEEGESIVALL-PCEHLYHSECISNWLQIKKICPICSTEASPPKNHNN 189 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~~~~~~L~-~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~~~~~~ 189 (195)
....|+||+..|..+ +.+ +|||.||..||..|+. ..||+||..+......++
T Consensus 21 ~~~~C~IC~~~~~~p----v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~n 73 (117)
T 1jm7_B 21 KLLRCSRCTNILREP----VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKIN 73 (117)
T ss_dssp HTTSCSSSCSCCSSC----BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCC
T ss_pred hCCCCCCCChHhhCc----cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcccccccc
Confidence 357899999999876 334 8999999999999998 889999999866555444
No 52
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.17 E-value=1.4e-11 Score=88.42 Aligned_cols=55 Identities=13% Similarity=0.026 Sum_probs=46.9
Q ss_pred CCCcccccccccccCCceeEEecCcc-ceechhhHHHHhhcCCCCCccccccCCCCCCCc
Q 044318 131 SGIDRCVICQVEYEEGESIVALLPCE-HLYHSECISNWLQIKKICPICSTEASPPKNHNN 189 (195)
Q Consensus 131 ~~~~~C~ICl~~f~~~~~~~~L~~C~-H~FH~~CI~~Wl~~~~sCPvCR~~l~~~~~~~~ 189 (195)
.....|+||++.|+++ +.++|| |.|++.||.+||..+.+||+||.++......++
T Consensus 20 p~~~~CpI~~~~m~dP----V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn 75 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP----VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPN 75 (98)
T ss_dssp CTTTBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEEC
T ss_pred cHhcCCcCccccccCC----eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEc
Confidence 3567999999999987 445999 999999999999988999999999987655544
No 53
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.14 E-value=2e-11 Score=80.88 Aligned_cols=49 Identities=29% Similarity=0.554 Sum_probs=40.2
Q ss_pred CCcccccccccccCCceeEEecCccce-echhhHHHHhhcCCCCCccccccC
Q 044318 132 GIDRCVICQVEYEEGESIVALLPCEHL-YHSECISNWLQIKKICPICSTEAS 182 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~~~~~~L~~C~H~-FH~~CI~~Wl~~~~sCPvCR~~l~ 182 (195)
....|+||++.+.+. +...+||||. ||..|+..|++.++.||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG--CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE--EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCE--EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 456899999987654 2212399999 899999999998999999999874
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.11 E-value=2.2e-11 Score=92.89 Aligned_cols=51 Identities=22% Similarity=0.389 Sum_probs=42.2
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHhhcCC-CCCccccccCCC
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKK-ICPICSTEASPP 184 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~-sCPvCR~~l~~~ 184 (195)
......|+||+..|..+ +.+ +|||.||..||.+|++... +||+||.++...
T Consensus 28 l~~~~~C~IC~~~~~~p---v~~-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP---FQA-QCGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp CCGGGBCTTTCSBCSSE---EEC-TTSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred CCcCcCCCCCChhhcCc---EEC-CCCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 34567999999999877 334 9999999999999998665 899999987543
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.10 E-value=3.3e-11 Score=79.55 Aligned_cols=50 Identities=22% Similarity=0.463 Sum_probs=40.7
Q ss_pred CCCcccccccccccCCceeEEecCccce-echhhHHHHhhcCCCCCccccccC
Q 044318 131 SGIDRCVICQVEYEEGESIVALLPCEHL-YHSECISNWLQIKKICPICSTEAS 182 (195)
Q Consensus 131 ~~~~~C~ICl~~f~~~~~~~~L~~C~H~-FH~~CI~~Wl~~~~sCPvCR~~l~ 182 (195)
.....|+||++.+.+. +....||||. ||..|+.+|.+..+.||+||+++.
T Consensus 5 ~~~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG--NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCE--EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCe--EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 3457899999986554 2233499998 999999999988899999999874
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.08 E-value=6.3e-11 Score=103.86 Aligned_cols=48 Identities=27% Similarity=0.704 Sum_probs=41.0
Q ss_pred CcccccccccccCCceeEEecCccceechhhHHHHhh-cCCCCCccccccCCC
Q 044318 133 IDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQ-IKKICPICSTEASPP 184 (195)
Q Consensus 133 ~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~-~~~sCPvCR~~l~~~ 184 (195)
...|+||++.+... +. +||||.||..||..|+. .+.+||+||+++...
T Consensus 332 ~~~C~ICle~~~~p---v~-lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDV---KI-EPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCE---EE-ETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCe---EE-eCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 47899999998654 33 49999999999999998 788999999988654
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.05 E-value=9.7e-11 Score=97.03 Aligned_cols=56 Identities=16% Similarity=0.090 Sum_probs=45.5
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHhhcC-CCCCccccccCCCCCCCc
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIK-KICPICSTEASPPKNHNN 189 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~-~sCPvCR~~l~~~~~~~~ 189 (195)
......|+||++.|.++ +.++|||.||..||.+|+..+ .+||+||.++......++
T Consensus 205 ~~~~~~c~i~~~~~~dP----v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n 261 (281)
T 2c2l_A 205 IPDYLCGKISFELMREP----CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPN 261 (281)
T ss_dssp CCSTTBCTTTCSBCSSE----EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEEC
T ss_pred CCcccCCcCcCCHhcCC----eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCccc
Confidence 34567899999999987 445999999999999999764 459999999976555444
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.02 E-value=7.8e-11 Score=80.03 Aligned_cols=43 Identities=30% Similarity=0.572 Sum_probs=36.3
Q ss_pred CcccccccccccCCceeEEecCccce-echhhHHHHhhcCCCCCccccccCC
Q 044318 133 IDRCVICQVEYEEGESIVALLPCEHL-YHSECISNWLQIKKICPICSTEASP 183 (195)
Q Consensus 133 ~~~C~ICl~~f~~~~~~~~L~~C~H~-FH~~CI~~Wl~~~~sCPvCR~~l~~ 183 (195)
...|+||++.+... +.+ ||||. ||..|+..| ..||+||+.+..
T Consensus 24 ~~~C~iC~~~~~~~---~~~-pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIAI---VFV-PCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCCE---EEE-TTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCCE---EEc-CCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 46899999987664 344 99999 999999999 889999998754
No 59
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=1.3e-10 Score=82.56 Aligned_cols=56 Identities=23% Similarity=0.404 Sum_probs=42.5
Q ss_pred CCCcccccccccccCCceeEEecCccceechhhHHHHhhcC------CCCCc--cccc-cCCCCCCCc
Q 044318 131 SGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIK------KICPI--CSTE-ASPPKNHNN 189 (195)
Q Consensus 131 ~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~------~sCPv--CR~~-l~~~~~~~~ 189 (195)
.....|+||+..|.++ +.+..|||.|++.||..||..+ .+||+ |+.. +......++
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn 69 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQD 69 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEEC
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCC
Confidence 3467899999999886 3341499999999999999754 48999 9876 655444433
No 60
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.95 E-value=1.2e-10 Score=100.28 Aligned_cols=55 Identities=24% Similarity=0.564 Sum_probs=41.8
Q ss_pred CCCCcccccccccccCCcee----EEecCccceechhhHHHHhhcC-----------CCCCccccccCCC
Q 044318 130 KSGIDRCVICQVEYEEGESI----VALLPCEHLYHSECISNWLQIK-----------KICPICSTEASPP 184 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~----~~L~~C~H~FH~~CI~~Wl~~~-----------~sCPvCR~~l~~~ 184 (195)
.....+|+||++.+..+..+ -..++|+|.||..||.+||+.. ++||+||+++..+
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 34677999999998763221 1123799999999999999752 5799999988643
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.94 E-value=2.4e-10 Score=89.08 Aligned_cols=52 Identities=23% Similarity=0.483 Sum_probs=43.2
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHhhcC-CCCCccccccCCCC
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIK-KICPICSTEASPPK 185 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~-~sCPvCR~~l~~~~ 185 (195)
......|+||+..|..+ +.+ +|||.||..||.+|++.+ .+||+||..+....
T Consensus 15 ~~~~~~C~IC~~~~~~p---v~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 15 LESKYECPICLMALREA---VQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (170)
T ss_dssp CCGGGBCTTTCSBCSSE---EEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCChhhcCc---EEC-CCCCHHHHHHHHHHHHhCCCCCCCCccCcchhh
Confidence 44567999999999876 334 999999999999999765 49999999987643
No 62
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.89 E-value=5e-10 Score=88.62 Aligned_cols=55 Identities=16% Similarity=0.094 Sum_probs=45.2
Q ss_pred CCCcccccccccccCCceeEEecCccceechhhHHHHhhcC-CCCCccccccCCCCCCCc
Q 044318 131 SGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIK-KICPICSTEASPPKNHNN 189 (195)
Q Consensus 131 ~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~-~sCPvCR~~l~~~~~~~~ 189 (195)
.....||||+..|.++ +.++|||.|+..||..|+..+ .+||+||.++......++
T Consensus 104 p~~f~CPI~~elm~DP----V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN 159 (179)
T 2f42_A 104 PDYLCGKISFELMREP----CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPN 159 (179)
T ss_dssp CGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEEC
T ss_pred cHhhcccCccccCCCC----eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcch
Confidence 4667999999999987 334999999999999999764 479999999876655544
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=7.2e-10 Score=75.28 Aligned_cols=44 Identities=27% Similarity=0.569 Sum_probs=35.9
Q ss_pred CcccccccccccCCceeEEecCccce-echhhHHHHhhcCCCCCccccccCCC
Q 044318 133 IDRCVICQVEYEEGESIVALLPCEHL-YHSECISNWLQIKKICPICSTEASPP 184 (195)
Q Consensus 133 ~~~C~ICl~~f~~~~~~~~L~~C~H~-FH~~CI~~Wl~~~~sCPvCR~~l~~~ 184 (195)
...|+||++.+... +++||||. ||..|+.. ...||+||.++...
T Consensus 25 ~~~C~IC~~~~~~~----~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIAI----VFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCCB----CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCCE----EEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 35799999998765 44599999 99999965 37899999988653
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=3.8e-09 Score=70.66 Aligned_cols=48 Identities=27% Similarity=0.650 Sum_probs=38.2
Q ss_pred CCCCCcccccccccccCCceeEEecCccce-echhhHHHHhhcCCCCCccccccCCC
Q 044318 129 TKSGIDRCVICQVEYEEGESIVALLPCEHL-YHSECISNWLQIKKICPICSTEASPP 184 (195)
Q Consensus 129 ~~~~~~~C~ICl~~f~~~~~~~~L~~C~H~-FH~~CI~~Wl~~~~sCPvCR~~l~~~ 184 (195)
.......|+||++.+... +++||||. ||..|+.. ...||+||+.+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~----v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNW----VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp SCCCSSCCSSSSSSCCCC----EETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred cCCCCCCCCCcCcCCCCE----EEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 344567899999987654 55599999 99999984 47899999988653
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.79 E-value=1.5e-09 Score=74.77 Aligned_cols=44 Identities=23% Similarity=0.636 Sum_probs=35.6
Q ss_pred CcccccccccccCCceeEEecCccce-echhhHHHHhhcCCCCCccccccCCC
Q 044318 133 IDRCVICQVEYEEGESIVALLPCEHL-YHSECISNWLQIKKICPICSTEASPP 184 (195)
Q Consensus 133 ~~~C~ICl~~f~~~~~~~~L~~C~H~-FH~~CI~~Wl~~~~sCPvCR~~l~~~ 184 (195)
...|+||++.+... +++||||. ||..|+..| ..||+||.++...
T Consensus 18 ~~~C~IC~~~~~~~----v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEINS----TFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCCE----EEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCcE----EEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 35899999887653 44499999 999999987 3899999987643
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.77 E-value=3.8e-09 Score=74.60 Aligned_cols=48 Identities=21% Similarity=0.684 Sum_probs=38.5
Q ss_pred CCcccccccccccCCceeEEecCccceechhhHHHHhhcC--------CCCCc--cccc
Q 044318 132 GIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIK--------KICPI--CSTE 180 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~--------~sCPv--CR~~ 180 (195)
....|+||++.+..+..+. +.+|||.||..||..|+..+ ..||. ||..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~-l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTT-IAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEE-ETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceE-cCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4568999999987765444 43899999999999999632 37999 9987
No 67
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.76 E-value=4.8e-09 Score=68.59 Aligned_cols=50 Identities=28% Similarity=0.642 Sum_probs=37.8
Q ss_pred CCCCcccccccccccCCceeEEecCcc--c---eechhhHHHHhhc--CCCCCccccccCC
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCE--H---LYHSECISNWLQI--KKICPICSTEASP 183 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~--H---~FH~~CI~~Wl~~--~~sCPvCR~~l~~ 183 (195)
......|.||+.... +.+ .+ ||. | .||..||.+|+.. +.+||+||.++..
T Consensus 3 ~~~~~~CrIC~~~~~--~~l-~~-PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 3 DEDVPVCWICNEELG--NER-FR-ACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp TCSCCEETTTTEECS--CCC-CC-SCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCCEeEEeecCCC--Cce-ec-CcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 346678999998743 333 34 765 4 9999999999964 5789999998753
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.75 E-value=1.2e-09 Score=91.03 Aligned_cols=57 Identities=26% Similarity=0.430 Sum_probs=45.0
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHhhcC--CCCCc--cccccCCCCCCCc
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIK--KICPI--CSTEASPPKNHNN 189 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~--~sCPv--CR~~l~~~~~~~~ 189 (195)
......||||+..|..+ ++. ..|||.||+.||..|++.+ .+||+ ||+.+......++
T Consensus 178 ~~~el~CPIcl~~f~DP--Vts-~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN 238 (267)
T 3htk_C 178 GKIELTCPITCKPYEAP--LIS-RKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRD 238 (267)
T ss_dssp SBCCSBCTTTSSBCSSE--EEE-SSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEEC
T ss_pred CceeeECcCccCcccCC--eee-CCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcC
Confidence 34567899999999887 222 3899999999999999764 47999 9998876655444
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.74 E-value=2.6e-09 Score=70.07 Aligned_cols=53 Identities=11% Similarity=0.081 Sum_probs=44.1
Q ss_pred CcccccccccccCCceeEEec-CccceechhhHHHHhhcCCCCCccccccCCCCCCCc
Q 044318 133 IDRCVICQVEYEEGESIVALL-PCEHLYHSECISNWLQIKKICPICSTEASPPKNHNN 189 (195)
Q Consensus 133 ~~~C~ICl~~f~~~~~~~~L~-~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~~~~~~ 189 (195)
...|+||++.+.++ ++. +|||+|.+.||.+|++.+++||+++.++......+.
T Consensus 3 ~~~CpIs~~~m~dP----V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~ 56 (61)
T 2bay_A 3 HMLCAISGKVPRRP----VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEI 56 (61)
T ss_dssp -CCCTTTCSCCSSE----EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEEC
T ss_pred eEEecCCCCCCCCC----EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEEC
Confidence 35799999999876 333 899999999999999988899999999976655443
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.65 E-value=8.6e-09 Score=89.23 Aligned_cols=44 Identities=30% Similarity=0.635 Sum_probs=36.9
Q ss_pred CCcccccccccccCCceeEEecCccce-echhhHHHHhhcCCCCCccccccCC
Q 044318 132 GIDRCVICQVEYEEGESIVALLPCEHL-YHSECISNWLQIKKICPICSTEASP 183 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~~~~~~L~~C~H~-FH~~CI~~Wl~~~~sCPvCR~~l~~ 183 (195)
....|+||++.+... +.+ ||||. ||..|+..| ..||+||.++..
T Consensus 294 ~~~~C~IC~~~~~~~---v~l-pCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSV---VFI-PCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCE---EEE-TTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCce---EEc-CCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 356899999998764 344 99999 999999998 789999998753
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.40 E-value=2e-07 Score=66.53 Aligned_cols=46 Identities=24% Similarity=0.528 Sum_probs=36.6
Q ss_pred ccccccccccCCceeEEecCccceechhhHHHHhh-cCCCCCccccccCC
Q 044318 135 RCVICQVEYEEGESIVALLPCEHLYHSECISNWLQ-IKKICPICSTEASP 183 (195)
Q Consensus 135 ~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~-~~~sCPvCR~~l~~ 183 (195)
-|.+|--.+.. ..+++ ||+|+||.+|+..|.+ ..++||+|+.++..
T Consensus 3 fC~~C~~Pi~i--ygRmI-PCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMI-PCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSE--EEEEE-TTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEE--Eeeec-cccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 48888766544 34555 9999999999999985 46899999998864
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.30 E-value=7.9e-07 Score=73.18 Aligned_cols=53 Identities=21% Similarity=0.474 Sum_probs=42.9
Q ss_pred CCcccccccccccCCceeEEecCccceechhhHHHHhhcCC--CCCccccccCCCCCC
Q 044318 132 GIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKK--ICPICSTEASPPKNH 187 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~--sCPvCR~~l~~~~~~ 187 (195)
....|.||.+-+..+ .....|+|.||..|+.+|++.+. .||.|+..++.....
T Consensus 179 ~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~~ 233 (238)
T 3nw0_A 179 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK 233 (238)
T ss_dssp TCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCCC
T ss_pred CCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Confidence 478999999998876 33435999999999999997654 899999988765433
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=97.04 E-value=0.00049 Score=48.28 Aligned_cols=50 Identities=26% Similarity=0.616 Sum_probs=40.0
Q ss_pred CCCCCcccccccccccCCceeEEecCc-cceechhhHHHHhhcCCCCCccccccCCC
Q 044318 129 TKSGIDRCVICQVEYEEGESIVALLPC-EHLYHSECISNWLQIKKICPICSTEASPP 184 (195)
Q Consensus 129 ~~~~~~~C~ICl~~f~~~~~~~~L~~C-~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~ 184 (195)
.-.+-..|-.|+-.++. + ..| .|++|..||...|..+..||+|+.+++.+
T Consensus 24 s~~G~~nCKsCWf~~k~---L---V~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 24 THLGPQFCKSCWFENKG---L---VECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCSCCCCCCSSCSCCSS---E---EECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred cccCcccChhhccccCC---e---eeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 34566789999866442 2 256 59999999999999999999999998755
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.71 E-value=0.013 Score=38.51 Aligned_cols=49 Identities=18% Similarity=0.359 Sum_probs=35.2
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHhhcC----CCCCccccccC
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIK----KICPICSTEAS 182 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~----~sCPvCR~~l~ 182 (195)
......|.||... + .++..-.|...||..|+...|... -.||.|+....
T Consensus 9 ~~~~~~C~vC~~~---~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 9 LAPGARCGVCGDG---T-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp CCTTCCCTTTSCC---T-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCCCCCcCCCCCC---C-eEEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 3455789999743 3 344455799999999999887543 47999986543
No 75
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=95.49 E-value=0.0093 Score=38.53 Aligned_cols=51 Identities=24% Similarity=0.518 Sum_probs=37.3
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHhh-----cCCCCCccccc
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQ-----IKKICPICSTE 180 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~-----~~~sCPvCR~~ 180 (195)
......|+||...+......+..-.|...||..|+.--.. ..-.||.|+.+
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 3456789999998865555566568999999999864332 34579999764
No 76
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.48 E-value=0.0085 Score=41.88 Aligned_cols=35 Identities=20% Similarity=0.458 Sum_probs=25.8
Q ss_pred CcccccccccccCCceeEEecCccceechhhHHH-Hh
Q 044318 133 IDRCVICQVEYEEGESIVALLPCEHLYHSECISN-WL 168 (195)
Q Consensus 133 ~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~-Wl 168 (195)
...|.||.+.+.......-+ .|+|.||..|+.. |.
T Consensus 3 e~~C~~C~~~~~~~av~~C~-~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCV-TCEVSYCDECLKATHP 38 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEET-TTTEEECHHHHHHHSC
T ss_pred CCCCcCCCCCCCCCceEECC-cCChHHhHHHCHHHhc
Confidence 46899999875433333335 9999999999998 54
No 77
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=93.64 E-value=0.082 Score=36.27 Aligned_cols=37 Identities=14% Similarity=0.479 Sum_probs=24.7
Q ss_pred CCCCCcccccccccccCCceeEEecCccceechhhHHHH
Q 044318 129 TKSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNW 167 (195)
Q Consensus 129 ~~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~W 167 (195)
....++.|.||- .|...+.. ..--|+-+||..||.+-
T Consensus 11 ~~~~D~~C~VC~-~~t~~~l~-pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 11 PVVNDEMCDVCE-VWTAESLF-PCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCSCCCTTTC-CCCSSCCS-SCSSSSSCCCHHHHHHH
T ss_pred CCCCCcccCccc-ccccccee-ccccccccccHhhcccc
Confidence 344678999994 44444221 12247899999999996
No 78
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=92.74 E-value=0.06 Score=34.76 Aligned_cols=54 Identities=26% Similarity=0.529 Sum_probs=37.3
Q ss_pred CCCCccccccccccc-CCceeEEecCccceechhhHHHHhh-------cCCCCCccccccCC
Q 044318 130 KSGIDRCVICQVEYE-EGESIVALLPCEHLYHSECISNWLQ-------IKKICPICSTEASP 183 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~-~~~~~~~L~~C~H~FH~~CI~~Wl~-------~~~sCPvCR~~l~~ 183 (195)
......|.||..... ....++..-.|.-.||..|+..-+. ..-.||.|+.....
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~~ 64 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTT 64 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTSC
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcccc
Confidence 446678999997753 2344555558999999999986442 23479999765543
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=92.70 E-value=0.053 Score=35.98 Aligned_cols=54 Identities=20% Similarity=0.506 Sum_probs=37.5
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHhh----cCCCCCccccccCCC
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQ----IKKICPICSTEASPP 184 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~----~~~sCPvCR~~l~~~ 184 (195)
......|.||..... +..++..-.|.-.||..|+..-.. ..-.||.|+..+...
T Consensus 15 ~~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 15 GNQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp SCEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CCCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 334567999987753 444555557999999999976543 234799998876543
No 80
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=92.53 E-value=0.076 Score=41.62 Aligned_cols=49 Identities=20% Similarity=0.515 Sum_probs=36.0
Q ss_pred CcccccccccccCCce---eEEecCccceechhhHHHH------hh-----cCCCCCcccccc
Q 044318 133 IDRCVICQVEYEEGES---IVALLPCEHLYHSECISNW------LQ-----IKKICPICSTEA 181 (195)
Q Consensus 133 ~~~C~ICl~~f~~~~~---~~~L~~C~H~FH~~CI~~W------l~-----~~~sCPvCR~~l 181 (195)
+..|+||...|..++. .+..-.|...||..|+.-- +. ..-.||.|+..-
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 3469999999987763 5666689999999997431 11 156899998754
No 81
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=92.06 E-value=0.11 Score=32.10 Aligned_cols=44 Identities=20% Similarity=0.396 Sum_probs=32.1
Q ss_pred ccccccccccCCceeEEec-CccceechhhHHHHh----hcCCCCCccc
Q 044318 135 RCVICQVEYEEGESIVALL-PCEHLYHSECISNWL----QIKKICPICS 178 (195)
Q Consensus 135 ~C~ICl~~f~~~~~~~~L~-~C~H~FH~~CI~~Wl----~~~~sCPvCR 178 (195)
.|.||...+..+...+..- .|...||..|+.--. ..+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 5789998887666666665 699999999975322 2456899985
No 82
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=92.04 E-value=0.048 Score=38.87 Aligned_cols=50 Identities=18% Similarity=0.474 Sum_probs=35.6
Q ss_pred CcccccccccccCCceeEEec-CccceechhhHHHHh----------hcCCCCCccccccC
Q 044318 133 IDRCVICQVEYEEGESIVALL-PCEHLYHSECISNWL----------QIKKICPICSTEAS 182 (195)
Q Consensus 133 ~~~C~ICl~~f~~~~~~~~L~-~C~H~FH~~CI~~Wl----------~~~~sCPvCR~~l~ 182 (195)
...|+||...+......+..- .|...||..|+.--- ..+-.||.|+....
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 467999999986655555554 689999999974221 13457999987543
No 83
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=91.82 E-value=0.082 Score=34.87 Aligned_cols=53 Identities=25% Similarity=0.426 Sum_probs=36.1
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHh----hcCCCCCccccccCC
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWL----QIKKICPICSTEASP 183 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl----~~~~sCPvCR~~l~~ 183 (195)
......| ||......+...+..-.|...||..|+.--- .....||.|+..-.+
T Consensus 13 ~~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~p 69 (72)
T 1wee_A 13 DNWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGP 69 (72)
T ss_dssp CSSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCSS
T ss_pred CCcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCCC
Confidence 3345578 7988766665556666899999999986432 234579999865433
No 84
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=91.81 E-value=0.3 Score=33.75 Aligned_cols=58 Identities=22% Similarity=0.328 Sum_probs=41.5
Q ss_pred CCCccccccccccc---CCceeEEecCccceechhhHHHHh-hcCCCCCccccccCCCCCCC
Q 044318 131 SGIDRCVICQVEYE---EGESIVALLPCEHLYHSECISNWL-QIKKICPICSTEASPPKNHN 188 (195)
Q Consensus 131 ~~~~~C~ICl~~f~---~~~~~~~L~~C~H~FH~~CI~~Wl-~~~~sCPvCR~~l~~~~~~~ 188 (195)
.....|.||-..+- +++..+....|+-..|+.|..-=. ..+..||.|+++....+..+
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgsp 75 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSP 75 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccccCCC
Confidence 35679999998863 344444445788889999986554 45678999999997554443
No 85
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=91.78 E-value=0.15 Score=32.61 Aligned_cols=47 Identities=32% Similarity=0.652 Sum_probs=33.4
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHhh----cCCCCCccccc
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQ----IKKICPICSTE 180 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~----~~~sCPvCR~~ 180 (195)
......|.||... + .++..-.|...||..|+..-+. ..-.||.|+..
T Consensus 8 ~~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 4456789999863 3 3444457889999999987553 23479999753
No 86
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=91.73 E-value=0.29 Score=32.73 Aligned_cols=50 Identities=18% Similarity=0.397 Sum_probs=34.5
Q ss_pred CCCcccccccccccCCceeEEecCccceechhhHHHHhh-----cCCCCCcccccc
Q 044318 131 SGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQ-----IKKICPICSTEA 181 (195)
Q Consensus 131 ~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~-----~~~sCPvCR~~l 181 (195)
.....| ||...+......+..-.|...||..|+.--.. ..-.||.|+...
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 344566 99888754555555558999999999853221 345799998654
No 87
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.42 E-value=0.064 Score=33.64 Aligned_cols=47 Identities=28% Similarity=0.706 Sum_probs=32.8
Q ss_pred CCCCCcccccccccccCCceeEEecCccceechhhHHHHhhc----CCCCCcccc
Q 044318 129 TKSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQI----KKICPICST 179 (195)
Q Consensus 129 ~~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~----~~sCPvCR~ 179 (195)
.......|.||... + .++....|...||..|+..-+.. .-.||.|+.
T Consensus 5 ~~~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 5 SSGHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCSSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred cCCCCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 45567789999864 3 34444579999999999865532 235888864
No 88
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=90.89 E-value=0.41 Score=33.02 Aligned_cols=50 Identities=26% Similarity=0.535 Sum_probs=35.0
Q ss_pred CCCCCcccccccccccCCceeEEecCccceechhhHHHHhhc----CCCCCccccccC
Q 044318 129 TKSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQI----KKICPICSTEAS 182 (195)
Q Consensus 129 ~~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~----~~sCPvCR~~l~ 182 (195)
.......|.||... + .+...-.|.-.||..|+..=+.. .-.||.|+..-.
T Consensus 21 ~d~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 21 LDDSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 74 (88)
T ss_dssp SSSSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred cCCCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCc
Confidence 34566789999854 3 34444578899999999776543 347999986543
No 89
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=90.80 E-value=0.13 Score=40.65 Aligned_cols=49 Identities=22% Similarity=0.525 Sum_probs=34.9
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHhhc----CCCCCccccccC
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQI----KKICPICSTEAS 182 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~----~~sCPvCR~~l~ 182 (195)
......|.+|... ..+...-.|...||..|+...+.. .-.||.|+..-.
T Consensus 4 d~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 4 DPNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp CSSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 3456789999743 335555579999999999876643 247999987543
No 90
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=90.57 E-value=0.11 Score=33.18 Aligned_cols=48 Identities=25% Similarity=0.642 Sum_probs=32.6
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHhhc----CCCCCcccccc
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQI----KKICPICSTEA 181 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~----~~sCPvCR~~l 181 (195)
......|.||... + .++..-.|...||..|+..-+.. .-.||.|+...
T Consensus 6 d~~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 4456789999753 2 33333468899999999865532 34699997643
No 91
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=90.03 E-value=0.2 Score=30.55 Aligned_cols=44 Identities=25% Similarity=0.631 Sum_probs=29.7
Q ss_pred ccccccccccCCceeEEecCccceechhhHHHHhhc----CCCCCcccc
Q 044318 135 RCVICQVEYEEGESIVALLPCEHLYHSECISNWLQI----KKICPICST 179 (195)
Q Consensus 135 ~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~----~~sCPvCR~ 179 (195)
.|.||...-..+ .++..-.|...||..|+..=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588897654333 34444589999999999754432 236999975
No 92
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=89.77 E-value=0.21 Score=35.45 Aligned_cols=48 Identities=21% Similarity=0.423 Sum_probs=31.9
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHhhc----CCCCCccc
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQI----KKICPICS 178 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~----~~sCPvCR 178 (195)
......|.||...-.. ..++.-..|+..||..||..++.. .-.||.|+
T Consensus 4 ~~~~~~C~~C~~~g~~-~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDL-LDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCSCBTTTCCCCCT-TTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCcCCCCCCCC-cCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 4567889999876322 223444589999999999877642 23466553
No 93
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=89.68 E-value=0.19 Score=38.86 Aligned_cols=47 Identities=28% Similarity=0.630 Sum_probs=33.7
Q ss_pred CCcccccccccccCCceeEEecCccceechhhHHHHhhc----CCCCCccccccC
Q 044318 132 GIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQI----KKICPICSTEAS 182 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~----~~sCPvCR~~l~ 182 (195)
....|.||... ++ +...-.|...||..|+..-+.. .-.||.|+..-.
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 45679999844 33 4444579999999999776643 347999987543
No 94
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=89.39 E-value=0.28 Score=31.81 Aligned_cols=49 Identities=18% Similarity=0.405 Sum_probs=33.8
Q ss_pred CCCCcccccccccccCCceeEEec-CccceechhhHHHHhh----------cCCCCCccc
Q 044318 130 KSGIDRCVICQVEYEEGESIVALL-PCEHLYHSECISNWLQ----------IKKICPICS 178 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~-~C~H~FH~~CI~~Wl~----------~~~sCPvCR 178 (195)
......|++|...+......+..- .|.-.||..|+.---. ..-.||.|+
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 445678999999988777777776 7999999999732211 134688885
No 95
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=88.99 E-value=0.28 Score=33.71 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=37.1
Q ss_pred CCCCcccccccccc-cCCceeEEecCccceechhhHHHHhh--cCCCCCccccccCCC
Q 044318 130 KSGIDRCVICQVEY-EEGESIVALLPCEHLYHSECISNWLQ--IKKICPICSTEASPP 184 (195)
Q Consensus 130 ~~~~~~C~ICl~~f-~~~~~~~~L~~C~H~FH~~CI~~Wl~--~~~sCPvCR~~l~~~ 184 (195)
......|.||...- .....++..-.|.-.||..|+..-+. ..-.||.|+......
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~ 79 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARP 79 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSC
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchh
Confidence 34567899998753 23335555557889999999975432 234799998765444
No 96
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=88.67 E-value=0.23 Score=35.51 Aligned_cols=45 Identities=24% Similarity=0.560 Sum_probs=31.0
Q ss_pred ccccccccccCCceeEEecCccceechhhHHHHhhc----CCCCCcccc
Q 044318 135 RCVICQVEYEEGESIVALLPCEHLYHSECISNWLQI----KKICPICST 179 (195)
Q Consensus 135 ~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~----~~sCPvCR~ 179 (195)
.|.||...-.....+...-.|...||..|+..-|.. .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 678887643333345555579999999999765543 247999975
No 97
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=88.54 E-value=0.23 Score=47.98 Aligned_cols=55 Identities=11% Similarity=-0.005 Sum_probs=45.3
Q ss_pred CCCcccccccccccCCceeEEecCcc-ceechhhHHHHhhcCCCCCccccccCCCCCCCc
Q 044318 131 SGIDRCVICQVEYEEGESIVALLPCE-HLYHSECISNWLQIKKICPICSTEASPPKNHNN 189 (195)
Q Consensus 131 ~~~~~C~ICl~~f~~~~~~~~L~~C~-H~FH~~CI~~Wl~~~~sCPvCR~~l~~~~~~~~ 189 (195)
.....|||-++-+.++ +.+|-| +.|-+.+|.+|+..+.+||+=|.++......++
T Consensus 889 P~~F~cPIs~~lM~DP----VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN 944 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDP----VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPN 944 (968)
T ss_dssp CGGGBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEEC
T ss_pred cHHhCCcchhhHHhCC----eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCccccccc
Confidence 3567899999998887 334887 689999999999999999999999986655544
No 98
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=88.38 E-value=0.46 Score=33.17 Aligned_cols=46 Identities=24% Similarity=0.594 Sum_probs=31.2
Q ss_pred CCcccccccccccCCceeEEecCccceechhhHHHHhhc---CCCCCcccc
Q 044318 132 GIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQI---KKICPICST 179 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~---~~sCPvCR~ 179 (195)
....| ||......+ .++..-.|.-.||..|+..=+.. .-.||.|+.
T Consensus 27 d~vrC-iC~~~~~~~-~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDG-YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSS-CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCC-cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34567 897765544 44555589999999998653322 347999974
No 99
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=88.06 E-value=0.35 Score=31.98 Aligned_cols=48 Identities=23% Similarity=0.542 Sum_probs=32.5
Q ss_pred CcccccccccccCCceeEEecCccceechhhHHHHh---------hcCCCCCccccccC
Q 044318 133 IDRCVICQVEYEEGESIVALLPCEHLYHSECISNWL---------QIKKICPICSTEAS 182 (195)
Q Consensus 133 ~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl---------~~~~sCPvCR~~l~ 182 (195)
...| ||...+.. ...+..-.|...||..|+.--. .....||.|+..-.
T Consensus 16 ~~~C-~C~~~~~~-~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 16 ALYC-ICRQPHNN-RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CCCS-TTCCCCCS-SCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCEE-ECCCccCC-CCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 4556 89887653 3445555899999999984321 24578999986543
No 100
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=88.04 E-value=0.18 Score=34.59 Aligned_cols=50 Identities=24% Similarity=0.577 Sum_probs=35.2
Q ss_pred CcccccccccccC-CceeEEecCccceechhhHHHHhh--------cCCCCCccccccC
Q 044318 133 IDRCVICQVEYEE-GESIVALLPCEHLYHSECISNWLQ--------IKKICPICSTEAS 182 (195)
Q Consensus 133 ~~~C~ICl~~f~~-~~~~~~L~~C~H~FH~~CI~~Wl~--------~~~sCPvCR~~l~ 182 (195)
...|.||...-.. ...++..-.|...||..|+..-|. ..-.||.|+....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 4679999876432 234555557999999999987553 2357999977554
No 101
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=87.90 E-value=0.24 Score=32.01 Aligned_cols=48 Identities=23% Similarity=0.567 Sum_probs=33.5
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHhhc----CCCCCcccccc
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQI----KKICPICSTEA 181 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~----~~sCPvCR~~l 181 (195)
......|.||... + .++..-.|...||..|+..-+.. .-.||.|+..-
T Consensus 5 ~~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 5 QKNEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp CSCCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 3457789999854 3 34444478999999999865532 34699997643
No 102
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=87.55 E-value=0.73 Score=34.56 Aligned_cols=46 Identities=20% Similarity=0.434 Sum_probs=33.6
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHhh-----------cCCCCCcccc
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQ-----------IKKICPICST 179 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~-----------~~~sCPvCR~ 179 (195)
+.....|.||... -.+...-.|...||..||.+-+. ..-.||+|+.
T Consensus 60 Dg~~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4567899999854 33455558999999999997652 2347999974
No 103
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=87.47 E-value=1 Score=30.63 Aligned_cols=41 Identities=20% Similarity=0.313 Sum_probs=31.1
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHhhc
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQI 170 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~ 170 (195)
......|.+|.+.+++...+..-..=.|.||..|-+..++.
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 45667899999999887654422234799999999998864
No 104
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=87.34 E-value=0.16 Score=38.87 Aligned_cols=49 Identities=22% Similarity=0.568 Sum_probs=34.3
Q ss_pred CCCcccccccccccCCceeEEecCccceechhhHHHHh-----hcCCCCCccccc
Q 044318 131 SGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWL-----QIKKICPICSTE 180 (195)
Q Consensus 131 ~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl-----~~~~sCPvCR~~ 180 (195)
.....| ||......+...+..-.|...||..|+.--. ...-.||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 355678 9998875555556666899999999985322 234579999864
No 105
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=86.82 E-value=0.31 Score=31.84 Aligned_cols=48 Identities=19% Similarity=0.499 Sum_probs=32.5
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHhh---cCCCCCcccc
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQ---IKKICPICST 179 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~---~~~sCPvCR~ 179 (195)
......| ||..... +...+..-.|...||..|+.---. ..-.||.|+.
T Consensus 16 ~~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 16 FQGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 3455678 9987765 444555557999999999854321 3357999864
No 106
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=86.70 E-value=0.95 Score=32.19 Aligned_cols=35 Identities=20% Similarity=0.450 Sum_probs=25.3
Q ss_pred CCcccccccccc-----cCCceeEEecCccceechhhHHH
Q 044318 132 GIDRCVICQVEY-----EEGESIVALLPCEHLYHSECISN 166 (195)
Q Consensus 132 ~~~~C~ICl~~f-----~~~~~~~~L~~C~H~FH~~CI~~ 166 (195)
....|.+|+..= ..++.++.-..|+..||..||..
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKF 43 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcC
Confidence 457899998752 12345666668999999999953
No 107
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=86.50 E-value=0.18 Score=31.97 Aligned_cols=47 Identities=28% Similarity=0.687 Sum_probs=33.0
Q ss_pred CCCcccccccccccCCceeEEecCccceechhhHHHHhhc----CCCCCcccccc
Q 044318 131 SGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQI----KKICPICSTEA 181 (195)
Q Consensus 131 ~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~----~~sCPvCR~~l 181 (195)
.....|.||... + .++..-.|...||..|+..-+.. .-.||.|+...
T Consensus 3 ~~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 3 IHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCCSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 346789999864 3 34444579999999999865532 34699997654
No 108
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=86.16 E-value=0.3 Score=32.04 Aligned_cols=44 Identities=20% Similarity=0.527 Sum_probs=28.2
Q ss_pred ccccccccccCCceeEEecCccceechhhHHHHhhc-----CCCCCcccc
Q 044318 135 RCVICQVEYEEGESIVALLPCEHLYHSECISNWLQI-----KKICPICST 179 (195)
Q Consensus 135 ~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~-----~~sCPvCR~ 179 (195)
.|.||...- .+..++.--.|...||..||..=|.. .-.||.|+.
T Consensus 20 ~C~~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 455666432 23344444578999999999854432 337999975
No 109
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=85.95 E-value=0.46 Score=34.01 Aligned_cols=34 Identities=21% Similarity=0.384 Sum_probs=24.6
Q ss_pred ccccccccccc------CCceeEEecCccceechhhHHHH
Q 044318 134 DRCVICQVEYE------EGESIVALLPCEHLYHSECISNW 167 (195)
Q Consensus 134 ~~C~ICl~~f~------~~~~~~~L~~C~H~FH~~CI~~W 167 (195)
..|.||+..-. .+..++.-..|+..||..||..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 57999987642 12355555689999999999765
No 110
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=85.64 E-value=0.18 Score=36.89 Aligned_cols=52 Identities=15% Similarity=0.343 Sum_probs=33.5
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCcccccc
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEA 181 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l 181 (195)
......|.+|...|..-..---...||.+||..|........+.|-.|-..+
T Consensus 16 d~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 16 TGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp ----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred ccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 3445689999999965433333448999999999888776677888886543
No 111
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=85.23 E-value=0.31 Score=32.18 Aligned_cols=51 Identities=20% Similarity=0.306 Sum_probs=35.1
Q ss_pred CCCCcccccccccc-cCCceeEEecCccceechhhHHHHh--hcCCCCCccccc
Q 044318 130 KSGIDRCVICQVEY-EEGESIVALLPCEHLYHSECISNWL--QIKKICPICSTE 180 (195)
Q Consensus 130 ~~~~~~C~ICl~~f-~~~~~~~~L~~C~H~FH~~CI~~Wl--~~~~sCPvCR~~ 180 (195)
......|.||...- .....++..-.|.-.||..|+..-. ...-.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 45678899998763 3344555556899999999997533 223469999754
No 112
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.98 E-value=0.38 Score=32.24 Aligned_cols=44 Identities=27% Similarity=0.520 Sum_probs=29.2
Q ss_pred ccccccccccCCceeEEecCccceechhhHHHHhhc-----CCCCCcccc
Q 044318 135 RCVICQVEYEEGESIVALLPCEHLYHSECISNWLQI-----KKICPICST 179 (195)
Q Consensus 135 ~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~-----~~sCPvCR~ 179 (195)
.|.||...-. +..++..-.|...||..|+..=|.. .-.||.|+.
T Consensus 28 ~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 6778875432 3344444589999999999854432 236999864
No 113
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.77 E-value=0.27 Score=34.06 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=33.9
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHhhc----CCCCCccccc
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQI----KKICPICSTE 180 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~----~~sCPvCR~~ 180 (195)
......|.||...-.. ..++..-.|...||..|+..=+.. .-.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3345679999876432 344445589999999999754432 3469999764
No 114
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.46 E-value=0.82 Score=31.66 Aligned_cols=46 Identities=28% Similarity=0.658 Sum_probs=28.7
Q ss_pred CCcccccccccccCCceeEEecC--cc-ceechhhHHHHhh----cCCCCCccccccC
Q 044318 132 GIDRCVICQVEYEEGESIVALLP--CE-HLYHSECISNWLQ----IKKICPICSTEAS 182 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~~~~~~L~~--C~-H~FH~~CI~~Wl~----~~~sCPvCR~~l~ 182 (195)
....| ||..... + .++..-. |. ..||..|+. |. .+-.||.|+..-.
T Consensus 35 e~~yC-iC~~~~~-g-~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 35 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCBCS-TTCCBCC-S-CCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCcEE-ECCCCCC-C-CEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 44567 9987643 3 2232324 55 689999996 32 2347999986543
No 115
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=83.36 E-value=1.7 Score=31.97 Aligned_cols=46 Identities=20% Similarity=0.441 Sum_probs=32.3
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHh------h-----cCCCCCcccc
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWL------Q-----IKKICPICST 179 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl------~-----~~~sCPvCR~ 179 (195)
+.....|.||... ..+...-.|-..||..||.+-+ + ..-.|++|+-
T Consensus 54 Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 4456779999744 3444445789999999999752 1 2257999964
No 116
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=83.32 E-value=0.7 Score=30.79 Aligned_cols=49 Identities=22% Similarity=0.396 Sum_probs=32.4
Q ss_pred CCcccccccccccCCceeEEec--CccceechhhHHHHhh---------cCCCCCccccccC
Q 044318 132 GIDRCVICQVEYEEGESIVALL--PCEHLYHSECISNWLQ---------IKKICPICSTEAS 182 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~~~~~~L~--~C~H~FH~~CI~~Wl~---------~~~sCPvCR~~l~ 182 (195)
....| ||-.....+ ..+..- .|...||..|+.---. .+-.||.|+..-.
T Consensus 15 ~~~~C-iC~~~~~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~ 74 (78)
T 1wew_A 15 IKVRC-VCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG 74 (78)
T ss_dssp CCCCC-SSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred CCEEe-ECCCcCCCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccC
Confidence 45667 788774333 455554 6999999999853221 2457999986543
No 117
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=82.68 E-value=1.6 Score=29.80 Aligned_cols=53 Identities=21% Similarity=0.375 Sum_probs=36.4
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHhh-------cCCCCCccccccC
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQ-------IKKICPICSTEAS 182 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~-------~~~sCPvCR~~l~ 182 (195)
......|.+|...|..-..-.-.-.||++||..|....+. ..+.|-.|-..+.
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~ 65 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILT 65 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHH
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHH
Confidence 4456789999999975543333447999999999876432 2356877765543
No 118
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=82.60 E-value=2.1 Score=28.05 Aligned_cols=46 Identities=28% Similarity=0.658 Sum_probs=29.1
Q ss_pred CCcccccccccccCCceeEEecC--cc-ceechhhHHHHhh----cCCCCCccccccC
Q 044318 132 GIDRCVICQVEYEEGESIVALLP--CE-HLYHSECISNWLQ----IKKICPICSTEAS 182 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~~~~~~L~~--C~-H~FH~~CI~~Wl~----~~~sCPvCR~~l~ 182 (195)
....| ||..... + .++..-. |. ..||..|+. |. .+-.||.|+..-.
T Consensus 15 ~~~~C-~C~~~~~-g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 15 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp SCCCS-TTCCCSC-S-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCEE-ECCCCCC-C-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 44567 8987643 3 3333334 66 699999997 32 2347999986543
No 119
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=81.91 E-value=0.53 Score=31.54 Aligned_cols=44 Identities=20% Similarity=0.522 Sum_probs=28.0
Q ss_pred ccccccccccCCceeEEecCccceechhhHHHHhhc----C-CCCCcccc
Q 044318 135 RCVICQVEYEEGESIVALLPCEHLYHSECISNWLQI----K-KICPICST 179 (195)
Q Consensus 135 ~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~----~-~sCPvCR~ 179 (195)
.|.||...- ....++..-.|...||..|+..-|.. . -.||.|+.
T Consensus 28 ~C~vC~~~~-d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCC-CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 455665443 22344444578999999999876532 2 46999975
No 120
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=80.73 E-value=0.49 Score=36.93 Aligned_cols=45 Identities=29% Similarity=0.606 Sum_probs=30.8
Q ss_pred CcccccccccccCCceeEEecCccceechhhHHHHhhc----CCCCCcccccc
Q 044318 133 IDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQI----KKICPICSTEA 181 (195)
Q Consensus 133 ~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~----~~sCPvCR~~l 181 (195)
...|.+|... ++ +.....|...||..|+..=+.. .-.||.|+..-
T Consensus 2 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---SS-CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---Cc-eeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 4679999844 32 3333468899999999765532 34699998653
No 121
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=80.72 E-value=1.5 Score=29.42 Aligned_cols=53 Identities=23% Similarity=0.466 Sum_probs=35.5
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHhh------cCCCCCccccccC
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQ------IKKICPICSTEAS 182 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~------~~~sCPvCR~~l~ 182 (195)
+.....|.+|...|..-..-.-.-.||.+||..|....+. ..+.|-.|-..+.
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 74 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLL 74 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTT
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHH
Confidence 4456789999999975443333447999999999876542 1235666655443
No 122
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=80.50 E-value=0.36 Score=31.38 Aligned_cols=45 Identities=20% Similarity=0.420 Sum_probs=27.4
Q ss_pred CcccccccccccCCceeEEec--CccceechhhHHHHh---h-----cCCCCCcccc
Q 044318 133 IDRCVICQVEYEEGESIVALL--PCEHLYHSECISNWL---Q-----IKKICPICST 179 (195)
Q Consensus 133 ~~~C~ICl~~f~~~~~~~~L~--~C~H~FH~~CI~~Wl---~-----~~~sCPvCR~ 179 (195)
...| ||-.....+. .+..- .|...||..|+.--- . .+-.||.||.
T Consensus 10 ~v~C-~C~~~~~~g~-mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 10 KVRC-ICSSTMVNDS-MIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp EECC-TTCCCSCCSC-EEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CEEe-ECCCCcCCCC-EEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 3456 7866554443 33332 488999999983211 0 1357999974
No 123
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=80.39 E-value=2.8 Score=28.17 Aligned_cols=54 Identities=11% Similarity=0.279 Sum_probs=36.4
Q ss_pred CCCCCcccccccccccCCceeEEecCccceechhhHHHHhh--------cCCCCCccccccC
Q 044318 129 TKSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQ--------IKKICPICSTEAS 182 (195)
Q Consensus 129 ~~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~--------~~~sCPvCR~~l~ 182 (195)
.+.....|.+|...|..-..-.-.-.||++||..|....+. ..+.|-.|-..+.
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~ 78 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALR 78 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHH
T ss_pred cCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHh
Confidence 34567799999999975443333447999999999876531 2246777655443
No 124
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=79.72 E-value=1.1 Score=32.73 Aligned_cols=39 Identities=13% Similarity=0.397 Sum_probs=28.2
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHh
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWL 168 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl 168 (195)
+.....|.+|...|..-..-.-.-.||++||..|.....
T Consensus 66 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~ 104 (125)
T 1joc_A 66 DNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNA 104 (125)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCcc
Confidence 345678999999997543333344799999999976653
No 125
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=79.32 E-value=2 Score=27.75 Aligned_cols=42 Identities=21% Similarity=0.457 Sum_probs=31.7
Q ss_pred CCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCCC
Q 044318 132 GIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPP 184 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~ 184 (195)
....|..|-..+...+.+. .-+..||..|. .|..|+++|...
T Consensus 8 ~~~~C~~C~~~I~~~~~v~---a~~~~~H~~CF--------~C~~C~~~L~~~ 49 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVS---SLGKDWHKFCL--------KCERCSKTLTPG 49 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEE---ETTEEEETTTC--------BCSSSCCBCCTT
T ss_pred CCCCCcCCCCEeECCeEEE---ECCeEeeCCCC--------CCCCCCCccCCC
Confidence 4578999999988666544 34788999886 588898888643
No 126
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=79.08 E-value=1 Score=28.68 Aligned_cols=43 Identities=21% Similarity=0.470 Sum_probs=30.6
Q ss_pred cccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCcc
Q 044318 134 DRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPIC 177 (195)
Q Consensus 134 ~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvC 177 (195)
..|--|+..|.... ....+.|++.||.+|=.---..-..||-|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 45999999986432 24566899999999954322344689988
No 127
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=78.32 E-value=1.3 Score=30.28 Aligned_cols=51 Identities=18% Similarity=0.454 Sum_probs=34.6
Q ss_pred CCCcccccccccccCCceeEEecCccceechhhHHHHhh------cCCCCCcccccc
Q 044318 131 SGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQ------IKKICPICSTEA 181 (195)
Q Consensus 131 ~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~------~~~sCPvCR~~l 181 (195)
.....|.+|...|..-..-.-...||++||..|...+.. ..+.|-.|-..+
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 345789999999975443334448999999999877652 124566665443
No 128
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.88 E-value=1.9 Score=28.98 Aligned_cols=38 Identities=16% Similarity=0.319 Sum_probs=27.4
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHH
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNW 167 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~W 167 (195)
+.....|.+|...|..-..---.-.||.+||..|....
T Consensus 11 d~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEE
T ss_pred CCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCc
Confidence 44567899999999654332233479999999997654
No 129
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=77.03 E-value=1.9 Score=37.28 Aligned_cols=48 Identities=19% Similarity=0.389 Sum_probs=31.2
Q ss_pred cccccccccccCCceeEEecCccceechhhHHHHhh-----cCCCCCccccccCCCC
Q 044318 134 DRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQ-----IKKICPICSTEASPPK 185 (195)
Q Consensus 134 ~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~-----~~~sCPvCR~~l~~~~ 185 (195)
..|||-+..+..+ ++.. .|.|.-|.+- ..||. ....||+|.+.+....
T Consensus 250 L~CPlS~~ri~~P--vRg~-~C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~~~d 302 (371)
T 3i2d_A 250 LQCPISYTRMKYP--SKSI-NCKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIALEN 302 (371)
T ss_dssp SBCTTTSSBCSSE--EEET-TCCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCCGGG
T ss_pred ecCCCcccccccc--CcCC-cCCCcceECH-HHHHHHhhcCCceeCCCCCcccCHHH
Confidence 5788888777665 3444 8999855443 33442 2357999998875443
No 130
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=76.91 E-value=2.1 Score=27.61 Aligned_cols=12 Identities=17% Similarity=0.418 Sum_probs=5.5
Q ss_pred cccccccccccC
Q 044318 134 DRCVICQVEYEE 145 (195)
Q Consensus 134 ~~C~ICl~~f~~ 145 (195)
..|..|...+..
T Consensus 28 F~C~~C~~~L~~ 39 (76)
T 1iml_A 28 LKCEKCGKTLTS 39 (76)
T ss_dssp CBCTTTCCBCCT
T ss_pred CCccccCccCCC
Confidence 344555444443
No 131
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=76.46 E-value=2 Score=36.93 Aligned_cols=47 Identities=23% Similarity=0.454 Sum_probs=30.6
Q ss_pred cccccccccccCCceeEEecCccceechhhHHHHh---h--cCCCCCccccccCCC
Q 044318 134 DRCVICQVEYEEGESIVALLPCEHLYHSECISNWL---Q--IKKICPICSTEASPP 184 (195)
Q Consensus 134 ~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl---~--~~~sCPvCR~~l~~~ 184 (195)
..|||-...+..+ ++.. .|.|.-|.+ +..|| . ....||+|.+.+...
T Consensus 216 L~CPlS~~ri~~P--~Rg~-~C~HlqCFD-l~sfL~~~~~~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 216 LMCPLGKMRLTIP--CRAV-TCTHLQCFD-AALYLQMNEKKPTWICPVCDKKAAYE 267 (360)
T ss_dssp SBCTTTCSBCSSE--EEET-TCCCCCCEE-HHHHHHHHHHSCCCBCTTTCSBCCGG
T ss_pred eeCCCccceeccC--CcCC-CCCCCccCC-HHHHHHHHhhCCCeECCCCCcccCHH
Confidence 4699888777665 3344 899984443 23344 2 235799999887644
No 132
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=76.44 E-value=3.2 Score=26.24 Aligned_cols=42 Identities=19% Similarity=0.436 Sum_probs=29.8
Q ss_pred CcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCCC
Q 044318 133 IDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPP 184 (195)
Q Consensus 133 ~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~ 184 (195)
...|..|-..+...+.++. .-+..||..|. .|-.|+++|...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKME--YKGSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEE--ETTEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCCCccCCCcccCCceEEE--ECcCeecccCC--------cccccCCccCCC
Confidence 4579999988876544332 24678998886 588888877544
No 133
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=75.79 E-value=3.8 Score=26.87 Aligned_cols=41 Identities=29% Similarity=0.707 Sum_probs=31.1
Q ss_pred CCCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccC
Q 044318 131 SGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEAS 182 (195)
Q Consensus 131 ~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~ 182 (195)
.....|.-|-..+..++.+.. -+..||..|+ .|-.|+..|.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLA---LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEE---TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCCcCcCCeeCCCeEEEE---CCcccccccC--------CcCcCCCCcC
Confidence 356789999998876665443 4678999886 5888988875
No 134
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=75.78 E-value=2 Score=31.73 Aligned_cols=49 Identities=22% Similarity=0.519 Sum_probs=33.1
Q ss_pred CCCcccccccccc-cCCceeEEecCccceechhhHHHHhhc----CCCCCcccc
Q 044318 131 SGIDRCVICQVEY-EEGESIVALLPCEHLYHSECISNWLQI----KKICPICST 179 (195)
Q Consensus 131 ~~~~~C~ICl~~f-~~~~~~~~L~~C~H~FH~~CI~~Wl~~----~~sCPvCR~ 179 (195)
.....|.+|...| ...........|.|.+|..|-..-... .-.|-+|+.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 4678999999999 333334555589999999997543111 124777765
No 135
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=75.66 E-value=2.3 Score=27.76 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=25.3
Q ss_pred cccccccccccCCceeEEecCccceechhhHHHH
Q 044318 134 DRCVICQVEYEEGESIVALLPCEHLYHSECISNW 167 (195)
Q Consensus 134 ~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~W 167 (195)
..|.+|...|..-..-.-.-.||++||..|....
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNS 45 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCCe
Confidence 5899999999654333333479999999997654
No 136
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=75.41 E-value=3.5 Score=27.11 Aligned_cols=44 Identities=23% Similarity=0.511 Sum_probs=31.2
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCCC
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPP 184 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~ 184 (195)
......|..|-..+...+.+. .-+..||..|+ .|-.|++.|...
T Consensus 12 ~~~~~~C~~C~~~I~~~e~v~---a~~~~wH~~CF--------~C~~C~~~L~~~ 55 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLERLC---VNGHFFHRSCF--------RCHTCEATLWPG 55 (82)
T ss_dssp CCSSCBCSSSCCBCCTTTBCC---BTTBCCBTTTC--------BCSSSCCBCCTT
T ss_pred CCCCCCCcccCCCcccceEEE---ECCCeeCCCcC--------EEcCCCCCcCCC
Confidence 345678999999886665543 34778999886 577777776544
No 137
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=75.26 E-value=4.4 Score=28.73 Aligned_cols=48 Identities=27% Similarity=0.513 Sum_probs=30.8
Q ss_pred CCCCCcccccccccccCCceeEEec--CccceechhhHHHHhhc----CCCCCccccccC
Q 044318 129 TKSGIDRCVICQVEYEEGESIVALL--PCEHLYHSECISNWLQI----KKICPICSTEAS 182 (195)
Q Consensus 129 ~~~~~~~C~ICl~~f~~~~~~~~L~--~C~H~FH~~CI~~Wl~~----~~sCPvCR~~l~ 182 (195)
.......|.+|.. +..++..- .|-..||..|+. |.. .-.||.|+-.+.
T Consensus 11 ~~~~~~~C~~C~~----~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 11 KQMHEDYCFQCGD----GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp CCSSCSSCTTTCC----CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred cCCCCCCCCcCCC----CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 4456778999983 23344443 488999999997 432 235887654443
No 138
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=74.95 E-value=0.6 Score=40.36 Aligned_cols=52 Identities=17% Similarity=0.367 Sum_probs=0.0
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHhh-------cCCCCCcccccc
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQ-------IKKICPICSTEA 181 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~-------~~~sCPvCR~~l 181 (195)
......|.+|...|..-..-.-...||++||..|...++. ..+.|-.|-..+
T Consensus 372 ~~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 372 VTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp -----------------------------------------------------------
T ss_pred cccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 3456789999999864432223347999999999977652 135677776544
No 139
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=74.18 E-value=1.1 Score=36.10 Aligned_cols=45 Identities=20% Similarity=0.535 Sum_probs=26.2
Q ss_pred ccccccccccCCceeEEecCccceechhhHHHHhhc-----CCCCCccccc
Q 044318 135 RCVICQVEYEEGESIVALLPCEHLYHSECISNWLQI-----KKICPICSTE 180 (195)
Q Consensus 135 ~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~-----~~sCPvCR~~ 180 (195)
.|.+|...-. +..+...-.|...||..|+..=|.. .-.||.|+..
T Consensus 176 ~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 176 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 5778865422 2344444579999999999854432 2369999753
No 140
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=74.00 E-value=5.8 Score=26.32 Aligned_cols=43 Identities=16% Similarity=0.416 Sum_probs=30.9
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCCC
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPP 184 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~ 184 (195)
......|.-|-..+.. ..+ . .-+..||..|+ .|-.|++.|...
T Consensus 22 ~~~~~~C~~C~~~I~~-~~~--~-a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (89)
T 1x64_A 22 AQRMPLCDKCGSGIVG-AVV--K-ARDKYRHPECF--------VCADCNLNLKQK 64 (89)
T ss_dssp CCSCCBCTTTCCBCCS-CCE--E-SSSCEECTTTC--------CCSSSCCCTTTS
T ss_pred CCcCCCcccCCCEecc-cEE--E-ECCceECccCC--------EecCCCCCCCCC
Confidence 3455789999988875 222 2 46789999986 588888887643
No 141
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=73.66 E-value=2.9 Score=26.41 Aligned_cols=42 Identities=17% Similarity=0.423 Sum_probs=29.0
Q ss_pred CcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCCC
Q 044318 133 IDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPP 184 (195)
Q Consensus 133 ~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~ 184 (195)
...|..|-..+...+.++ ..-+..||..|. +|-.|+++|...
T Consensus 5 ~~~C~~C~~~I~~~~~~~--~a~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKL--EYGGQTWHEHCF--------LCSGCEQPLGSR 46 (72)
T ss_dssp CCBCSSSCCBCCSSSCEE--CSTTCCEETTTC--------BCTTTCCBTTTS
T ss_pred CCCCccCCCccccCccEE--EECccccCcccC--------eECCCCCcCCCC
Confidence 467888988887643332 245778898886 588888777543
No 142
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=73.45 E-value=2 Score=34.00 Aligned_cols=36 Identities=17% Similarity=0.369 Sum_probs=26.7
Q ss_pred CcccccccccccCCceeEEecCccceechhhHHHHh
Q 044318 133 IDRCVICQVEYEEGESIVALLPCEHLYHSECISNWL 168 (195)
Q Consensus 133 ~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl 168 (195)
...|.+|...|..-..-.-.-.||++||..|.....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~ 196 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQC 196 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCee
Confidence 469999999996543333344799999999976644
No 143
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=72.91 E-value=1.3 Score=31.20 Aligned_cols=46 Identities=20% Similarity=0.451 Sum_probs=29.4
Q ss_pred ccccccccccCCceeEEecCccceechhhHHHHhhc----CCCCCcccccc
Q 044318 135 RCVICQVEYEEGESIVALLPCEHLYHSECISNWLQI----KKICPICSTEA 181 (195)
Q Consensus 135 ~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~----~~sCPvCR~~l 181 (195)
.|.||...-.. ..+.....|...||..|+..=+.. .-.||.|+...
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICI 105 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcC
Confidence 45666654322 234444589999999999865532 34699996543
No 144
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=72.85 E-value=2.1 Score=34.12 Aligned_cols=50 Identities=16% Similarity=0.489 Sum_probs=34.7
Q ss_pred CcccccccccccCCceeEEecCccceechhhHHHHhh--------cCCCCCccccccC
Q 044318 133 IDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQ--------IKKICPICSTEAS 182 (195)
Q Consensus 133 ~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~--------~~~sCPvCR~~l~ 182 (195)
...|.+|...|..-..-.-...||++||..|...+.. ..+.|-.|-..+.
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~ 221 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLN 221 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHC
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhh
Confidence 4689999999975543334448999999999876542 1246777765553
No 145
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=71.85 E-value=1.7 Score=27.45 Aligned_cols=43 Identities=28% Similarity=0.694 Sum_probs=26.7
Q ss_pred CCcccccccccccCCceeEEecC--cc-ceechhhHHHHhhc----CCCCCcccc
Q 044318 132 GIDRCVICQVEYEEGESIVALLP--CE-HLYHSECISNWLQI----KKICPICST 179 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~~~~~~L~~--C~-H~FH~~CI~~Wl~~----~~sCPvCR~ 179 (195)
....| ||..... + .++..-. |. ..||..|+. |.. +-.||.|+.
T Consensus 9 e~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34556 8987632 3 3333335 55 689999997 432 346999864
No 146
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=71.52 E-value=1.8 Score=27.25 Aligned_cols=43 Identities=26% Similarity=0.665 Sum_probs=27.4
Q ss_pred CCcccccccccccCCceeEEecC--cc-ceechhhHHHHhhc----CCCCCcccc
Q 044318 132 GIDRCVICQVEYEEGESIVALLP--CE-HLYHSECISNWLQI----KKICPICST 179 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~~~~~~L~~--C~-H~FH~~CI~~Wl~~----~~sCPvCR~ 179 (195)
....| ||.... .+ .++..-. |. ..||..|+. +.. +-.||.|+.
T Consensus 8 e~~yC-~C~~~~-~g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YG-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CC-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34556 898764 23 3444445 66 699999997 322 346999964
No 147
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=71.16 E-value=4.9 Score=26.08 Aligned_cols=43 Identities=19% Similarity=0.441 Sum_probs=31.1
Q ss_pred CCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCCC
Q 044318 132 GIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPP 184 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~ 184 (195)
....|..|-..+...+.++. .-+..||..|+ +|-.|+++|...
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 14 DSPKCKGCFKAIVAGDQNVE--YKGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp CSCBCSSSCCBCCSSSCEEE--CSSCEEETTTC--------CCSSSCCCCTTS
T ss_pred cCCcCccCCcccccCceEEE--ECccccccccC--------chhhCCCccCCC
Confidence 34689999998876555432 35778998886 588888877654
No 148
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=71.00 E-value=4 Score=26.14 Aligned_cols=44 Identities=25% Similarity=0.591 Sum_probs=30.9
Q ss_pred CCCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCCC
Q 044318 131 SGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPP 184 (195)
Q Consensus 131 ~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~ 184 (195)
.....|.-|-..+...+.++. .-+..||..|. .|-.|+++|...
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~~~ 52 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVN--SNGELYHEQCF--------VCAQCFQQFPEG 52 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEE--ETTEEECTTTC--------CCTTTCCCCGGG
T ss_pred CCCCCchhcCCccCCCceEEE--eCccEeccccC--------eECCCCCCCCCC
Confidence 356789999998875544432 24778998886 588888777543
No 149
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.70 E-value=5.4 Score=25.15 Aligned_cols=40 Identities=18% Similarity=0.506 Sum_probs=25.5
Q ss_pred CcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccC
Q 044318 133 IDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEAS 182 (195)
Q Consensus 133 ~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~ 182 (195)
...|..|-..+...+.++. .-+..||..|+ .|-.|+++|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVV--ALDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEE--CSSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEE--ECCCeEcccCC--------cccccCCcCC
Confidence 4578888777665332222 34677888775 5777877774
No 150
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.94 E-value=6.1 Score=24.92 Aligned_cols=42 Identities=24% Similarity=0.523 Sum_probs=29.4
Q ss_pred CCcccccccccccC--CceeEEecCccceechhhHHHHhhcCCCCCccccccCC
Q 044318 132 GIDRCVICQVEYEE--GESIVALLPCEHLYHSECISNWLQIKKICPICSTEASP 183 (195)
Q Consensus 132 ~~~~C~ICl~~f~~--~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~ 183 (195)
....|.-|-..+.. ...++. .-+..||..|+ .|-.|+++|..
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~~~--a~~~~wH~~CF--------~C~~C~~~L~~ 47 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKYIS--FEERQWHNDCF--------NCKKCSLSLVG 47 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSCEE--CSSCEECTTTC--------BCSSSCCBCTT
T ss_pred CCCCCcCCCccccCCCCcceEE--ECCcccCcccC--------EeccCCCcCCC
Confidence 35689999988875 223222 35788999886 68888887754
No 151
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=69.54 E-value=1.7 Score=26.40 Aligned_cols=41 Identities=17% Similarity=0.462 Sum_probs=27.0
Q ss_pred cccccccCCceeEEecCccceechhhHHHHh---hcCCCCCcccc
Q 044318 138 ICQVEYEEGESIVALLPCEHLYHSECISNWL---QIKKICPICST 179 (195)
Q Consensus 138 ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl---~~~~sCPvCR~ 179 (195)
||..... +...+..-.|...||..|+.--- ..+-.||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6766544 43445555799999999985322 23457999874
No 152
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=69.25 E-value=2.3 Score=27.88 Aligned_cols=47 Identities=17% Similarity=0.490 Sum_probs=32.1
Q ss_pred ccccccccccCCceeEEecCccceechhhHHHHhh-----cCCCCCcccccc
Q 044318 135 RCVICQVEYEEGESIVALLPCEHLYHSECISNWLQ-----IKKICPICSTEA 181 (195)
Q Consensus 135 ~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~-----~~~sCPvCR~~l 181 (195)
.-.||...+......+..-.|.-.||..|+.---. ..-.||.|+...
T Consensus 11 ~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 11 VYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred eEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 34489877654555555557999999999954321 245799998653
No 153
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.54 E-value=6.3 Score=25.24 Aligned_cols=40 Identities=28% Similarity=0.593 Sum_probs=27.3
Q ss_pred CcccccccccccC--CceeEEecCccceechhhHHHHhhcCCCCCccccccC
Q 044318 133 IDRCVICQVEYEE--GESIVALLPCEHLYHSECISNWLQIKKICPICSTEAS 182 (195)
Q Consensus 133 ~~~C~ICl~~f~~--~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~ 182 (195)
...|..|-..+.. ....+. .-+..||..|+ .|-.|+++|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~--a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFIC--FQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEE--ETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeEE--ECCcccCcccC--------ChhhCCCcCC
Confidence 4679999888875 223222 35678999886 5777777765
No 154
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=68.52 E-value=3 Score=27.20 Aligned_cols=42 Identities=19% Similarity=0.510 Sum_probs=29.2
Q ss_pred CCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCCC
Q 044318 132 GIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPP 184 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~ 184 (195)
....|..|-..+..++.+. .-+..||..|. .|-.|+++|...
T Consensus 6 ~~~~C~~C~~~I~~~~~~~---a~~~~~H~~CF--------~C~~C~~~L~~~ 47 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAEEVQ---CDGRSFHRCCF--------LCMVCRKNLDST 47 (81)
T ss_dssp --CBCSSSCCBCSSTTEEE---ETTEEEESSSE--------ECSSSCCEECSS
T ss_pred CCCcCcCcCccccCceeEE---eCCcccccccC--------ccCCCCCCCCCC
Confidence 3568999998887666433 35778998886 478888777544
No 155
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=67.97 E-value=0.72 Score=32.96 Aligned_cols=46 Identities=17% Similarity=0.476 Sum_probs=30.4
Q ss_pred ccccccccccCCceeEEecCccceechhhHHHHhhc----CCCCCcccccc
Q 044318 135 RCVICQVEYEEGESIVALLPCEHLYHSECISNWLQI----KKICPICSTEA 181 (195)
Q Consensus 135 ~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~----~~sCPvCR~~l 181 (195)
.|.||...-..+ .++..-.|...||..|+..=+.. .-.||.|+..+
T Consensus 60 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDD-QLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTT-TEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCC-ceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 577776653333 34444589999999999864432 23699997654
No 156
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.72 E-value=5.6 Score=26.45 Aligned_cols=42 Identities=19% Similarity=0.363 Sum_probs=30.4
Q ss_pred CCCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCCC
Q 044318 131 SGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPP 184 (195)
Q Consensus 131 ~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~ 184 (195)
.....|..|-..+. +..+. .-+..||..|+ .|-.|++.|...
T Consensus 23 ~~~~~C~~C~~~I~-~~~v~---a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (90)
T 2dar_A 23 KRTPMCAHCNQVIR-GPFLV---ALGKSWHPEEF--------NCAHCKNTMAYI 64 (90)
T ss_dssp TCCCBBSSSCCBCC-SCEEE---ETTEEECTTTC--------BCSSSCCBCSSS
T ss_pred CCCCCCccCCCEec-ceEEE---ECCccccccCC--------ccCCCCCCCCCC
Confidence 45678999998885 33332 45789999986 688888887643
No 157
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=67.44 E-value=2.3 Score=23.11 Aligned_cols=29 Identities=17% Similarity=0.400 Sum_probs=21.0
Q ss_pred CcccccccccccCCceeEEecCccceechhhH
Q 044318 133 IDRCVICQVEYEEGESIVALLPCEHLYHSECI 164 (195)
Q Consensus 133 ~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI 164 (195)
...|+.|-..+...+.+. .=|..||+.|.
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~---~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVN---CLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCC---SSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEE---ECCeEecccCC
Confidence 357999988887665544 45788998884
No 158
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=67.41 E-value=6 Score=24.68 Aligned_cols=43 Identities=26% Similarity=0.621 Sum_probs=31.7
Q ss_pred CCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCCC
Q 044318 132 GIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPP 184 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~ 184 (195)
....|.-|-..+...+.++. .=+..||..|. .|-.|+++|...
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~--~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVN--SNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEE--ETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CCccchhcCccccCCceEEE--eCcCeeCcCCC--------cccCCCCCCCCC
Confidence 45689999999887665443 34678999987 588888877544
No 159
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.71 E-value=8.5 Score=24.84 Aligned_cols=40 Identities=20% Similarity=0.406 Sum_probs=28.8
Q ss_pred CCCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccC
Q 044318 131 SGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEAS 182 (195)
Q Consensus 131 ~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~ 182 (195)
.....|.-|-..+... .+. .-+..||..|+ .|-.|++.|.
T Consensus 13 ~~~~~C~~C~~~I~~~-~~~---a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGV-FVK---LRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCCSSSCCCCCSS-CEE---CSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCCccccCCCCccCc-EEE---ECcceeCcCcC--------eeCCCCCCCC
Confidence 4567899999888753 222 45788999986 5778877664
No 160
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.25 E-value=7.9 Score=24.17 Aligned_cols=40 Identities=30% Similarity=0.716 Sum_probs=28.3
Q ss_pred CCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCC
Q 044318 132 GIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASP 183 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~ 183 (195)
....|..|-..+... .+ . .-+..||..|+ .|-.|+++|..
T Consensus 4 ~~~~C~~C~~~I~~~-~~--~-a~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8z_A 4 GSSGCVQCKKPITTG-GV--T-YREQPWHKECF--------VCTACRKQLSG 43 (70)
T ss_dssp CCCBCSSSCCBCCSS-EE--E-SSSSEEETTTS--------BCSSSCCBCTT
T ss_pred CCCCCcccCCeeccc-eE--E-ECccccCCCCC--------ccCCCCCcCCc
Confidence 346799998888643 22 2 45788998886 58888888754
No 161
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=65.26 E-value=2 Score=30.51 Aligned_cols=26 Identities=23% Similarity=0.569 Sum_probs=17.6
Q ss_pred CccceechhhHHHHhhcCCCCCccccccCCC
Q 044318 154 PCEHLYHSECISNWLQIKKICPICSTEASPP 184 (195)
Q Consensus 154 ~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~ 184 (195)
.||+.| ..-+.....||.|+......
T Consensus 72 ~CG~~F-----~~~~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 72 KCGFVF-----KAEINIPSRCPKCKSEWIEE 97 (105)
T ss_dssp TTCCBC-----CCCSSCCSSCSSSCCCCBCC
T ss_pred hCcCee-----cccCCCCCCCcCCCCCccCC
Confidence 799999 12234457899999865543
No 162
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=64.77 E-value=2.1 Score=30.08 Aligned_cols=12 Identities=33% Similarity=1.002 Sum_probs=10.8
Q ss_pred eechhhHHHHhh
Q 044318 158 LYHSECISNWLQ 169 (195)
Q Consensus 158 ~FH~~CI~~Wl~ 169 (195)
-||+.||.+|++
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999996
No 163
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=64.46 E-value=2.2 Score=29.98 Aligned_cols=12 Identities=25% Similarity=0.941 Sum_probs=10.8
Q ss_pred eechhhHHHHhh
Q 044318 158 LYHSECISNWLQ 169 (195)
Q Consensus 158 ~FH~~CI~~Wl~ 169 (195)
-||+.||.+|++
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999996
No 164
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=63.89 E-value=3.2 Score=26.36 Aligned_cols=45 Identities=24% Similarity=0.538 Sum_probs=27.3
Q ss_pred CCcccccccccccCCceeEEecC--cc-ceechhhHHHHh--hcCCCCCcccc
Q 044318 132 GIDRCVICQVEYEEGESIVALLP--CE-HLYHSECISNWL--QIKKICPICST 179 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~~~~~~L~~--C~-H~FH~~CI~~Wl--~~~~sCPvCR~ 179 (195)
....| ||.... .+ ..+..-. |. ..||..|+.--- ..+-.||.|+.
T Consensus 10 e~~yC-~C~~~~-~g-~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YG-EMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCC-CC-CeeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 34556 898763 23 3444435 55 899999996211 12346999965
No 165
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.79 E-value=8 Score=25.72 Aligned_cols=42 Identities=24% Similarity=0.561 Sum_probs=29.9
Q ss_pred CCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCCC
Q 044318 132 GIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPP 184 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~ 184 (195)
....|.-|-..+...+.+. .-+..||..|+ .|-.|+..|...
T Consensus 14 ~~~~C~~C~~~I~~~~~v~---a~~~~~H~~CF--------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLL---ANQQVFHISCF--------RCSYCNNKLSLG 55 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEE---CSSSEEETTTC--------BCTTTCCBCCTT
T ss_pred CCCcCccCCCccCCceeEE---ECCCEECCCCC--------eeCCCCCCCCCC
Confidence 4578999999887665432 46778998886 477777766543
No 166
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.53 E-value=6.4 Score=24.67 Aligned_cols=41 Identities=22% Similarity=0.469 Sum_probs=28.7
Q ss_pred CCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCCC
Q 044318 132 GIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPP 184 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~ 184 (195)
....|..|-..+.. ..+. .-+..||..|+ +|-.|+++|...
T Consensus 4 ~~~~C~~C~~~I~~-~~~~---a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 4 GSSGCHQCGEFIIG-RVIK---AMNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp CSSBCSSSCCBCCS-CCEE---ETTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCCcCccCCCEecc-eEEE---ECcccccccCC--------EeCCCCCcCCCC
Confidence 45679999888763 3322 34678898886 588888877654
No 167
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.67 E-value=11 Score=24.32 Aligned_cols=43 Identities=19% Similarity=0.417 Sum_probs=29.3
Q ss_pred CCCCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCCC
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPP 184 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~ 184 (195)
......|.-|-..+. +..+ ..-+..||..|. +|-.|+++|...
T Consensus 12 ~~~~~~C~~C~~~I~-~~~v---~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (79)
T 2cor_A 12 GLGKYICQKCHAIID-EQPL---IFKNDPYHPDHF--------NCANCGKELTAD 54 (79)
T ss_dssp CCCCCBCTTTCCBCC-SCCC---CCSSSCCCTTTS--------BCSSSCCBCCTT
T ss_pred ccCCCCCccCCCEec-ceEE---EECcceeCCCCC--------EeCCCCCccCCC
Confidence 334578999988877 3222 245778888885 588888777643
No 168
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=61.56 E-value=6.7 Score=24.25 Aligned_cols=39 Identities=21% Similarity=0.460 Sum_probs=28.5
Q ss_pred CcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCC
Q 044318 133 IDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASP 183 (195)
Q Consensus 133 ~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~ 183 (195)
...|+.|-..+. +.. +..-+..||..|. .|-.|+++|..
T Consensus 5 ~~~C~~C~~~I~-~~~---~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GRV---VNAMGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SCE---ECCTTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCCcccCCEec-ceE---EEECccccccCcC--------EECCCCCCCCC
Confidence 467999998887 332 2245778999886 58889888764
No 169
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=60.91 E-value=2 Score=23.13 Aligned_cols=14 Identities=29% Similarity=0.579 Sum_probs=9.8
Q ss_pred CCCCCccccccCCC
Q 044318 171 KKICPICSTEASPP 184 (195)
Q Consensus 171 ~~sCPvCR~~l~~~ 184 (195)
+..||+|+..++..
T Consensus 3 k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 3 DFCCPKCQYQAPDM 16 (28)
T ss_dssp CEECTTSSCEESSH
T ss_pred cccCccccccCcCh
Confidence 34699998877643
No 170
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.44 E-value=7.7 Score=24.19 Aligned_cols=40 Identities=25% Similarity=0.655 Sum_probs=27.9
Q ss_pred CCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCC
Q 044318 132 GIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASP 183 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~ 183 (195)
....|.-|-..+.. +.+. .-+..||..|+ .|-.|+++|..
T Consensus 4 ~~~~C~~C~~~I~~-~~~~---a~~~~~H~~CF--------~C~~C~~~L~~ 43 (69)
T 2cur_A 4 GSSGCVKCNKAITS-GGIT---YQDQPWHADCF--------VCVTCSKKLAG 43 (69)
T ss_dssp CCCCCSSSCCCCCT-TCEE---ETTEEECTTTT--------BCTTTCCBCTT
T ss_pred CcCCCcccCCEeCc-ceEE---ECccccccCcC--------EECCCCCCCCC
Confidence 35678889888764 3332 34678898886 58888888753
No 171
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=59.71 E-value=5.3 Score=30.09 Aligned_cols=47 Identities=17% Similarity=0.339 Sum_probs=31.8
Q ss_pred CCCccccccccccc--CCceeEEecCccceechhhHHHHhhcC--CCCCcccc
Q 044318 131 SGIDRCVICQVEYE--EGESIVALLPCEHLYHSECISNWLQIK--KICPICST 179 (195)
Q Consensus 131 ~~~~~C~ICl~~f~--~~~~~~~L~~C~H~FH~~CI~~Wl~~~--~sCPvCR~ 179 (195)
.....|.+|...|. .+. ......|.|.+|..|- .|+... -.|-+|+.
T Consensus 66 ~~~~~C~~C~~~fg~l~~~-g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNS-RRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSC-CEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCCccchhhcCccccccCC-CCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 35789999999863 333 3344489999999997 354332 24777754
No 172
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=59.24 E-value=8.9 Score=29.13 Aligned_cols=45 Identities=18% Similarity=0.384 Sum_probs=32.5
Q ss_pred CCCCcccccccccccCCceeEEec--CccceechhhHHHHhhc----------CCCCCccc
Q 044318 130 KSGIDRCVICQVEYEEGESIVALL--PCEHLYHSECISNWLQI----------KKICPICS 178 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~--~C~H~FH~~CI~~Wl~~----------~~sCPvCR 178 (195)
+.....|.||-.. ..++..- .|...||..||..++.. .-.|=+|.
T Consensus 76 DG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 76 DGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp TSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred CCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 4456789999743 4555554 59999999999999853 23688885
No 173
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=59.06 E-value=11 Score=23.92 Aligned_cols=42 Identities=26% Similarity=0.543 Sum_probs=30.0
Q ss_pred CcccccccccccC---CceeEEecCccceechhhHHHHhhcCCCCCccccccCCC
Q 044318 133 IDRCVICQVEYEE---GESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPP 184 (195)
Q Consensus 133 ~~~C~ICl~~f~~---~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~ 184 (195)
...|+-|-..+.. ....+. .=+..||..|. +|-.|+++|...
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~~~ 59 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVA--YEGQSWHDYCF--------HCKKCSVNLANK 59 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEE--ETTEEEETTTC--------BCSSSCCBCTTS
T ss_pred CccCcccCCcccCCCCCceeEE--ECcceeCcccC--------EehhcCCCCCCC
Confidence 4689999988874 223222 34778999886 699999888644
No 174
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=58.39 E-value=2.3 Score=28.68 Aligned_cols=37 Identities=14% Similarity=0.436 Sum_probs=23.6
Q ss_pred ccccccccccC--CceeEEecCccceechhhHHHHhhcC
Q 044318 135 RCVICQVEYEE--GESIVALLPCEHLYHSECISNWLQIK 171 (195)
Q Consensus 135 ~C~ICl~~f~~--~~~~~~L~~C~H~FH~~CI~~Wl~~~ 171 (195)
-||-|-..+.. ....+..+.|++.||..|-..|=..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H 65 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQH 65 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTT
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCchhhcC
Confidence 37766554422 22234553599999999999984433
No 175
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=58.15 E-value=8.6 Score=27.44 Aligned_cols=41 Identities=20% Similarity=0.521 Sum_probs=30.7
Q ss_pred CCCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccC
Q 044318 131 SGIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEAS 182 (195)
Q Consensus 131 ~~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~ 182 (195)
.....|.-|-..+.....+. .-+..||..|+ .|-.|+..|.
T Consensus 59 ~~~~~C~~C~~~I~~~~~v~---a~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 59 LSWKRCAGCGGKIADRFLLY---AMDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp SSCSBBSSSSSBCCSSSEEE---ETTEEEETTTS--------BCTTTCCBGG
T ss_pred ccCCcCcCCCCCcCCcEEEE---eCCcEEccccc--------CcCcCCCccc
Confidence 34578999998887653333 35788999996 6999998885
No 176
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.25 E-value=7.7 Score=25.09 Aligned_cols=39 Identities=31% Similarity=0.778 Sum_probs=26.6
Q ss_pred CcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCC
Q 044318 133 IDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASP 183 (195)
Q Consensus 133 ~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~ 183 (195)
...|..|-..+. +..+. .-+..||..|. .|-.|+++|..
T Consensus 15 ~~~C~~C~~~I~-~~~v~---a~~~~wH~~CF--------~C~~C~~~L~~ 53 (81)
T 1v6g_A 15 GTRCFSCDQFIE-GEVVS---ALGKTYHPDCF--------VCAVCRLPFPP 53 (81)
T ss_dssp CCBCTTTCCBCC-SCCEE---ETTEEECTTTS--------SCSSSCCCCCS
T ss_pred CCcCccccCEec-cceEE---ECCceeCccCC--------ccccCCCCCCC
Confidence 358999998877 33322 35788998886 47777766653
No 177
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=55.48 E-value=17 Score=24.29 Aligned_cols=46 Identities=15% Similarity=0.276 Sum_probs=25.7
Q ss_pred cccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCCC
Q 044318 134 DRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPP 184 (195)
Q Consensus 134 ~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~ 184 (195)
..|..|...+..... . . .=+..||..|..+ .....|..|...|.+.
T Consensus 34 F~C~~C~~~L~~~~~-~-~-~~g~~yC~~cy~~--~~~~~C~~C~~~I~~~ 79 (101)
T 2cup_A 34 FRCAKCLHPLANETF-V-A-KDNKILCNKCTTR--EDSPKCKGCFKAIVAG 79 (101)
T ss_dssp CCCSSSCCCTTSSCC-E-E-ETTEEECHHHHTT--CCCCBCSSSCCBCCSS
T ss_pred CcccccCCCCCcCee-E-C-cCCEEEChhHhhh--hcCCccccCCCccccC
Confidence 456666666543221 1 1 2355677666543 2345788888887643
No 178
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=54.58 E-value=2.1 Score=28.52 Aligned_cols=40 Identities=18% Similarity=0.329 Sum_probs=24.3
Q ss_pred Cccccc--ccccccC--CceeEEec-----CccceechhhHHHHhhcCCCC
Q 044318 133 IDRCVI--CQVEYEE--GESIVALL-----PCEHLYHSECISNWLQIKKIC 174 (195)
Q Consensus 133 ~~~C~I--Cl~~f~~--~~~~~~L~-----~C~H~FH~~CI~~Wl~~~~sC 174 (195)
..-||- |-..+.. ....+... .|+|.||..|...|=. .+|
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~--~~C 73 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE--GEC 73 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS--SCS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC--Ccc
Confidence 455665 6554432 12223333 6999999999999833 455
No 179
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=54.38 E-value=3.4 Score=36.52 Aligned_cols=49 Identities=16% Similarity=0.432 Sum_probs=33.5
Q ss_pred cccccccccccCCceeEEecCccceechhhHHHHhh-----cCCCCCccccccC
Q 044318 134 DRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQ-----IKKICPICSTEAS 182 (195)
Q Consensus 134 ~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~-----~~~sCPvCR~~l~ 182 (195)
....||...+..+...+..-.|.-.||..|+.---. .+-.||.|+....
T Consensus 5 ~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 5 PVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHG 58 (447)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHC
T ss_pred CeEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccC
Confidence 445689887754555566668999999999842211 2358999976543
No 180
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=53.73 E-value=4.8 Score=25.37 Aligned_cols=39 Identities=18% Similarity=0.422 Sum_probs=25.6
Q ss_pred CcccccccccccCCceeE--EecC--ccceechhhHHHHhhcC
Q 044318 133 IDRCVICQVEYEEGESIV--ALLP--CEHLYHSECISNWLQIK 171 (195)
Q Consensus 133 ~~~C~ICl~~f~~~~~~~--~L~~--C~H~FH~~CI~~Wl~~~ 171 (195)
...||-|...++...... .... |++.||..|+..|-...
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 357888877775543221 1213 88999999999987543
No 181
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.67 E-value=9.2 Score=24.37 Aligned_cols=37 Identities=24% Similarity=0.529 Sum_probs=19.6
Q ss_pred cccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccC
Q 044318 134 DRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEAS 182 (195)
Q Consensus 134 ~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~ 182 (195)
..|+-|-..+.. .. +..-+..||..|+ +|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~-~~---v~a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-RV---LEAGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-CC---BCCSSCCBCTTTS--------CCSSSCCCCC
T ss_pred CCcccCCCEecC-ee---EEeCCCCCCCCcC--------EeCCCCCCCC
Confidence 456667666544 11 1234566776664 3555555543
No 182
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=52.94 E-value=6.9 Score=27.70 Aligned_cols=44 Identities=16% Similarity=0.311 Sum_probs=26.4
Q ss_pred CCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCcccc
Q 044318 132 GIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICST 179 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~ 179 (195)
.-..|..|...+..+..... .=+..||..|..+.+.. .|..|..
T Consensus 35 ~CF~C~~C~~~L~~g~~f~~--~~g~~yC~~cy~~~~~~--~~~~~~~ 78 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYLL--INSDIVCEQDIYEWTKI--NGGSGGS 78 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEEE--CSSSEEEGGGHHHHHHH--HTCCCCC
T ss_pred ccCccccCCCCCCCCCcEEe--eCCEEEcHHHhHHHhcc--ccCCCCC
Confidence 34577888777755543332 34678888888776642 2444443
No 183
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.92 E-value=11 Score=24.27 Aligned_cols=39 Identities=26% Similarity=0.534 Sum_probs=26.8
Q ss_pred CcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCC
Q 044318 133 IDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASP 183 (195)
Q Consensus 133 ~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~ 183 (195)
...|..|-..+. +.. +..-+..||..|+ .|-.|++.|..
T Consensus 15 ~~~C~~C~~~I~-~~~---~~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (81)
T 1x6a_A 15 GEFCHGCSLLMT-GPF---MVAGEFKYHPECF--------ACMSCKVIIED 53 (81)
T ss_dssp SCBCTTTCCBCC-SCC---BCCTTCCBCTTSC--------BCTTTCCBCCT
T ss_pred CCcCccCCCCcC-ceE---EEECCceeccccC--------CccCCCCccCC
Confidence 457888888877 322 2245778888886 58888888754
No 184
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=52.37 E-value=4.1 Score=27.99 Aligned_cols=46 Identities=22% Similarity=0.335 Sum_probs=27.5
Q ss_pred CCCcccccccccccCCceeEEecCcc---ceechhhHHHHh--hcCCCCCc-ccc
Q 044318 131 SGIDRCVICQVEYEEGESIVALLPCE---HLYHSECISNWL--QIKKICPI-CST 179 (195)
Q Consensus 131 ~~~~~C~ICl~~f~~~~~~~~L~~C~---H~FH~~CI~~Wl--~~~~sCPv-CR~ 179 (195)
.....| ||..... +. ++..-.|. ..||..|+.--- ...-.||. |+.
T Consensus 24 ~~~~yC-iC~~~~~-g~-MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-GP-MVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS-SS-EECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC-CC-EEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 344567 8986532 32 44444544 689999985211 12347999 975
No 185
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=52.24 E-value=4.4 Score=22.77 Aligned_cols=10 Identities=40% Similarity=1.026 Sum_probs=5.7
Q ss_pred CCCccccccC
Q 044318 173 ICPICSTEAS 182 (195)
Q Consensus 173 sCPvCR~~l~ 182 (195)
.||+|++.+.
T Consensus 7 iCP~C~~~l~ 16 (34)
T 3mjh_B 7 ICPQCMKSLG 16 (34)
T ss_dssp ECTTTCCEES
T ss_pred CCcHHHHHcC
Confidence 4666665554
No 186
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=51.52 E-value=16 Score=25.62 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=33.4
Q ss_pred cccccccccccC-CceeEEecCccceechhhHHHHhhcCCCCCccccccCCC
Q 044318 134 DRCVICQVEYEE-GESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPP 184 (195)
Q Consensus 134 ~~C~ICl~~f~~-~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~ 184 (195)
..|..|...+.. +.... . .=+..||..|..+-+..+..|-.|..+|...
T Consensus 33 F~C~~C~~~L~~~~~~~~-~-~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSY-T-KSGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp HCCSSSCCCTTTSEECCE-E-ETTEEECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred CCcCCCCCcccccCCeEE-E-ECCeeecHHHHHHHcCCCCccccCCCCcCch
Confidence 467778777652 22222 2 4567889999888776666899999888753
No 187
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.35 E-value=10 Score=24.43 Aligned_cols=41 Identities=17% Similarity=0.553 Sum_probs=29.2
Q ss_pred CCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCCC
Q 044318 132 GIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPP 184 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~ 184 (195)
....|+-|-..+.. ..+. .-+..||..|+ +|..|+++|...
T Consensus 14 ~~~~C~~C~~~I~~-~~~~---a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (81)
T 2dlo_A 14 TLEKCATCSQPILD-RILR---AMGKAYHPGCF--------TCVVCHRGLDGI 54 (81)
T ss_dssp SCCBCTTTCCBCCS-CCEE---ETTEEECTTTC--------BCSSSCCBCTTS
T ss_pred CCCccccCCCeecc-eeEE---ECCccccHHhc--------CcccCCCccCCC
Confidence 45689999888873 2222 35788998886 588998888643
No 188
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=51.34 E-value=15 Score=25.88 Aligned_cols=40 Identities=20% Similarity=0.551 Sum_probs=28.6
Q ss_pred CCcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccC
Q 044318 132 GIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEAS 182 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~ 182 (195)
....|.-|-..+.....+. .-+..||..|+ +|-.|+.+|.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~---a~~~~wH~~CF--------~C~~C~~~L~ 43 (122)
T 1m3v_A 4 SWKRCAGCGGKIADRFLLY---AMDSYWHSRCL--------KCSSCQAQLG 43 (122)
T ss_dssp CCCCBSSSSSCCCSSCCEE---ETTEEECHHHH--------CCSSSCCCTT
T ss_pred CCCCCcccCCEeCCcEEEE---ECCceeHhhCC--------CcCCCCCccc
Confidence 3467999988887654333 34778999986 5888887775
No 189
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.14 E-value=13 Score=23.76 Aligned_cols=39 Identities=26% Similarity=0.675 Sum_probs=27.7
Q ss_pred CcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCC
Q 044318 133 IDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASP 183 (195)
Q Consensus 133 ~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~ 183 (195)
...|..|-..+... .+ . .-+..||..|+ +|-.|+++|..
T Consensus 15 ~~~C~~C~~~I~~~-~v--~-a~~~~~H~~CF--------~C~~C~~~L~~ 53 (80)
T 2cuq_A 15 APRCARCSKTLTQG-GV--T-YRDQPWHRECL--------VCTGCQTPLAG 53 (80)
T ss_dssp SCCCTTTCCCCCSC-CE--E-SSSSEECTTTC--------BCSSSCCBCTT
T ss_pred CCcCCCCCCEecCc-EE--E-ECCchhhhhhC--------CcccCCCcCCC
Confidence 46799998887653 22 2 45788998886 58888888753
No 190
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=50.90 E-value=4.9 Score=35.88 Aligned_cols=48 Identities=19% Similarity=0.471 Sum_probs=32.5
Q ss_pred CCcccccccccccCCceeEEecCccceechhhHHHHhh-----cCCCCCccccc
Q 044318 132 GIDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQ-----IKKICPICSTE 180 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~-----~~~sCPvCR~~ 180 (195)
....| ||...+..+...+..-.|.-.||..|+.---. .+-.||.|+..
T Consensus 36 ~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 33445 99887754555566668999999999843221 23579999854
No 191
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.61 E-value=11 Score=24.14 Aligned_cols=40 Identities=25% Similarity=0.528 Sum_probs=29.0
Q ss_pred CcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCCC
Q 044318 133 IDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPP 184 (195)
Q Consensus 133 ~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~ 184 (195)
...|..|-..+.. ..+. .-+..||..|+ .|-.|+++|...
T Consensus 15 ~~~C~~C~~~I~~-~~v~---a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (80)
T 1x3h_A 15 SPKCGGCNRPVLE-NYLS---AMDTVWHPECF--------VCGDCFTSFSTG 54 (80)
T ss_dssp SCBCTTTCCBCCS-SCEE---ETTEEECTTTC--------BCSSSCCBSCSS
T ss_pred CCccccCCCeecc-eeEE---ECCCeEecCcC--------ChhhCCCCCCCC
Confidence 4689999888875 3332 34678998886 588998888654
No 192
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=50.51 E-value=11 Score=32.73 Aligned_cols=46 Identities=22% Similarity=0.509 Sum_probs=32.3
Q ss_pred CCCCcccccccccccCCceeEEec--CccceechhhHHHHhhc----------CCCCCcccc
Q 044318 130 KSGIDRCVICQVEYEEGESIVALL--PCEHLYHSECISNWLQI----------KKICPICST 179 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~--~C~H~FH~~CI~~Wl~~----------~~sCPvCR~ 179 (195)
+.....|.||-.. ..++..- .|...||..||..++.. .-.|=+|.-
T Consensus 90 DG~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 90 DGYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 3345678888753 3455554 79999999999999832 346888863
No 193
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.48 E-value=11 Score=24.32 Aligned_cols=41 Identities=17% Similarity=0.431 Sum_probs=27.0
Q ss_pred CcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCC
Q 044318 133 IDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASP 183 (195)
Q Consensus 133 ~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~ 183 (195)
...|..|-..+.....++ ..=+..||..|+ .|-.|+++|..
T Consensus 15 ~~~C~~C~~~I~~~~~~~--~a~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSREL--FYEDRHFHEGCF--------RCCRCQRSLAD 55 (82)
T ss_dssp SCBCTTTCCBCCSSCCBC--CCSSCCCBTTTS--------BCTTTCCBCSS
T ss_pred CCcCccCCCccccCcEEE--EeCCccccccCC--------eecCCCCccCC
Confidence 457999988877333322 134678888885 57788777753
No 194
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=49.46 E-value=4.1 Score=34.24 Aligned_cols=49 Identities=20% Similarity=0.358 Sum_probs=33.4
Q ss_pred CCCcccccccccccCCceeEE---ecCccceechhhHHHHhhcCCCCCccccc
Q 044318 131 SGIDRCVICQVEYEEGESIVA---LLPCEHLYHSECISNWLQIKKICPICSTE 180 (195)
Q Consensus 131 ~~~~~C~ICl~~f~~~~~~~~---L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~ 180 (195)
.....||+|-..-... .+.. ...=.|.+|.-|-..|--....||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s-~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAG-MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEE-EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCcee-EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 5678999997664332 1110 11223678999999998888899999764
No 195
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=49.40 E-value=16 Score=22.50 Aligned_cols=41 Identities=22% Similarity=0.430 Sum_probs=28.6
Q ss_pred cccccccccccCCceeEEecCccceec--hhhHHHHhhcCCCCCccccccCCC
Q 044318 134 DRCVICQVEYEEGESIVALLPCEHLYH--SECISNWLQIKKICPICSTEASPP 184 (195)
Q Consensus 134 ~~C~ICl~~f~~~~~~~~L~~C~H~FH--~~CI~~Wl~~~~sCPvCR~~l~~~ 184 (195)
..|.-|-..+..+...+. .-+..|| ..|. +|-.|+++|...
T Consensus 3 ~~C~~C~~~I~~~~~~v~--a~~~~wH~~~~CF--------~C~~C~~~L~~~ 45 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVT--YNNFSWHASTECF--------LCSCCSKCLIGQ 45 (65)
T ss_dssp EECTTTSSEECTTSCEEE--ETTEEEETTTTTS--------BCTTTCCBCTTS
T ss_pred CCCcCCCCeeccCceEEE--ECCCccCCCCCCE--------ECCCCCCcCCCC
Confidence 468889888875433222 3478899 8885 688888887543
No 196
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=49.17 E-value=10 Score=22.65 Aligned_cols=27 Identities=22% Similarity=0.539 Sum_probs=15.1
Q ss_pred CccceechhhH--HHHhhcCC--CCCccccc
Q 044318 154 PCEHLYHSECI--SNWLQIKK--ICPICSTE 180 (195)
Q Consensus 154 ~C~H~FH~~CI--~~Wl~~~~--sCPvCR~~ 180 (195)
.||++|-..=- ..|-.... .||+|...
T Consensus 9 vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 9 VCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp TTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred CCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 57776653211 34444333 89999864
No 197
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=49.06 E-value=4 Score=25.93 Aligned_cols=49 Identities=20% Similarity=0.510 Sum_probs=28.9
Q ss_pred CCCCccccccccc-ccCCceeEEecCccceechhhHHHHhhc-CC---CCCcccc
Q 044318 130 KSGIDRCVICQVE-YEEGESIVALLPCEHLYHSECISNWLQI-KK---ICPICST 179 (195)
Q Consensus 130 ~~~~~~C~ICl~~-f~~~~~~~~L~~C~H~FH~~CI~~Wl~~-~~---sCPvCR~ 179 (195)
......|.||+.. |-++-. ....-|.-.||..|-.+|--. ++ .|-+||+
T Consensus 6 ~~d~~~C~iC~KTKFADG~G-h~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCG-HNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCC-EEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred cCCcchhhhhccceeccCCC-ccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 4567899999865 333321 222256667777887666522 22 4777764
No 198
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=48.87 E-value=17 Score=23.54 Aligned_cols=33 Identities=27% Similarity=0.709 Sum_probs=24.6
Q ss_pred CCCCcccccccccccCCceeEEecCc-cceechhhHHHH
Q 044318 130 KSGIDRCVICQVEYEEGESIVALLPC-EHLYHSECISNW 167 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~~~~~~~~L~~C-~H~FH~~CI~~W 167 (195)
.....-|.||.++ ..++-+ .| +-.||..|..+.
T Consensus 5 ~ee~pWC~ICneD----AtlrC~-gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 5 SSGLPWCCICNED----ATLRCA-GCDGDLYCARCFREG 38 (67)
T ss_dssp CCCCSSCTTTCSC----CCEEET-TTTSEEECSSHHHHH
T ss_pred CcCCCeeEEeCCC----CeEEec-CCCCceehHHHHHHH
Confidence 3456689999866 335555 89 889999998774
No 199
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=48.56 E-value=5.3 Score=31.35 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=13.7
Q ss_pred ecCccceechhhHHHHhhcCCCCCccccc
Q 044318 152 LLPCEHLYHSECISNWLQIKKICPICSTE 180 (195)
Q Consensus 152 L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~ 180 (195)
...|||+|-. .. ...||+|..+
T Consensus 174 C~~CG~i~~g--~~-----p~~CP~C~~~ 195 (202)
T 1yuz_A 174 CPICGYIHKG--ED-----FEKCPICFRP 195 (202)
T ss_dssp CSSSCCEEES--SC-----CSBCTTTCCB
T ss_pred ECCCCCEEcC--cC-----CCCCCCCCCC
Confidence 3467877542 22 2489999864
No 200
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=48.23 E-value=21 Score=26.55 Aligned_cols=10 Identities=20% Similarity=0.833 Sum_probs=4.8
Q ss_pred CCCccccccC
Q 044318 173 ICPICSTEAS 182 (195)
Q Consensus 173 sCPvCR~~l~ 182 (195)
.|-.|++.|.
T Consensus 95 ~C~~C~~~L~ 104 (169)
T 2rgt_A 95 ACVVCKRQLA 104 (169)
T ss_dssp BCTTTCCBCC
T ss_pred cCCCCCCCCC
Confidence 3555554443
No 201
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=47.59 E-value=17 Score=27.65 Aligned_cols=37 Identities=22% Similarity=0.634 Sum_probs=19.7
Q ss_pred ccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCcccccc
Q 044318 135 RCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEA 181 (195)
Q Consensus 135 ~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l 181 (195)
.|..|-..+...+.++. .-++.||..|. .|-.|++.|
T Consensus 71 ~C~~C~~~I~~~e~~i~--a~~~~~H~~CF--------~C~~C~~~L 107 (188)
T 1rut_X 71 ACSACGQSIPASELVMR--AQGNVYHLKCF--------TCSTCRNRL 107 (188)
T ss_dssp ECTTTCCEECTTSEEEE--ETTEEECGGGC--------BCTTTCCBC
T ss_pred ccccCCCccccCcEEEE--cCCCEEeCCCC--------eECCCCCCC
Confidence 56666666554433222 24566776663 455555544
No 202
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=47.50 E-value=14 Score=28.20 Aligned_cols=39 Identities=21% Similarity=0.555 Sum_probs=23.5
Q ss_pred CcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccC
Q 044318 133 IDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEAS 182 (195)
Q Consensus 133 ~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~ 182 (195)
...|..|-..+...+.+.. -+..||..|+ .|-.|++.|.
T Consensus 115 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~CF--------~C~~C~~~L~ 153 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVIG---AGKSWHKSCF--------RCAKCGKSLE 153 (192)
T ss_dssp CEECTTTSCEECSSSCEEE---TTEEECTTTC--------BCTTTCCBCC
T ss_pred CCcCCCCCCEecCcEEEec---CCCccchhcC--------CccccCCCCC
Confidence 4568888777765544432 3566777664 4666666554
No 203
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=47.43 E-value=9.8 Score=29.38 Aligned_cols=23 Identities=17% Similarity=0.521 Sum_probs=14.3
Q ss_pred ecCccceechhhHHHHhhcCCCCCccccc
Q 044318 152 LLPCEHLYHSECISNWLQIKKICPICSTE 180 (195)
Q Consensus 152 L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~ 180 (195)
...|||+|-.. .....||+|..+
T Consensus 158 C~~CG~~~~g~------~~p~~CP~C~~~ 180 (191)
T 1lko_A 158 CRNCGYVHEGT------GAPELCPACAHP 180 (191)
T ss_dssp ETTTCCEEEEE------ECCSBCTTTCCB
T ss_pred ECCCCCEeeCC------CCCCCCCCCcCC
Confidence 34688876532 123389999874
No 204
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=45.54 E-value=8.3 Score=28.82 Aligned_cols=26 Identities=15% Similarity=0.524 Sum_probs=17.2
Q ss_pred EecCccceechhhHHHHhhcCCCCCccccccC
Q 044318 151 ALLPCEHLYHSECISNWLQIKKICPICSTEAS 182 (195)
Q Consensus 151 ~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~ 182 (195)
....|||.|-.. .....||.|..++.
T Consensus 134 ~C~~Cg~~~~~~------~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 134 VCIGCGRKFSTL------PPGGVCPDCGSKVK 159 (165)
T ss_dssp EESSSCCEESSC------CGGGBCTTTCCBEE
T ss_pred ECCCCCCcccCC------CCCCcCCCCCCcce
Confidence 444788888543 22347999987753
No 205
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=44.29 E-value=13 Score=28.30 Aligned_cols=22 Identities=18% Similarity=0.487 Sum_probs=14.7
Q ss_pred ecCccceechhhHHHHhhcCCCCCccccc
Q 044318 152 LLPCEHLYHSECISNWLQIKKICPICSTE 180 (195)
Q Consensus 152 L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~ 180 (195)
...|||+|-. .....||+|..+
T Consensus 141 C~~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 141 CPICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp CTTTCCEEES-------CCCSBCTTTCCB
T ss_pred eCCCCCeeCC-------CCCCCCCCCCCC
Confidence 4478888752 233589999854
No 206
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=42.59 E-value=24 Score=24.35 Aligned_cols=14 Identities=0% Similarity=-0.358 Sum_probs=6.4
Q ss_pred cceechhhHHHHhh
Q 044318 156 EHLYHSECISNWLQ 169 (195)
Q Consensus 156 ~H~FH~~CI~~Wl~ 169 (195)
+.+||..|..+-+.
T Consensus 52 g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 52 GRKLCRRDYLRLGG 65 (114)
T ss_dssp TBCCCHHHHHHHHT
T ss_pred CeeechHHHHHHhC
Confidence 34455555444333
No 207
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=42.42 E-value=19 Score=25.35 Aligned_cols=27 Identities=7% Similarity=0.162 Sum_probs=12.6
Q ss_pred cceechhhHHHHhhcCCCCCccccccC
Q 044318 156 EHLYHSECISNWLQIKKICPICSTEAS 182 (195)
Q Consensus 156 ~H~FH~~CI~~Wl~~~~sCPvCR~~l~ 182 (195)
+..||..|..+-+..+..|..|...|.
T Consensus 51 g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 51 GRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred CEEeecCchhhhCCCccChhhcCCccC
Confidence 444555555443333234555555543
No 208
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=42.28 E-value=30 Score=25.96 Aligned_cols=27 Identities=19% Similarity=0.427 Sum_probs=15.6
Q ss_pred cceechhhHHHHhhcCCCCCccccccCCC
Q 044318 156 EHLYHSECISNWLQIKKICPICSTEASPP 184 (195)
Q Consensus 156 ~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~ 184 (195)
+..||..|..+- ....|..|+..|...
T Consensus 106 g~~yC~~~y~~~--f~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 106 ESVYCKDDFFKR--FGTKCAACQLGIPPT 132 (182)
T ss_dssp TEEECHHHHHHT--TSCCCTTTCCCCCSS
T ss_pred CEeeecCccccc--cccccccCCCccCCC
Confidence 445555554432 235788888777654
No 209
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.14 E-value=23 Score=23.46 Aligned_cols=49 Identities=20% Similarity=0.325 Sum_probs=30.4
Q ss_pred CCCCccccccccccc-CCceeEEecCccceechhhHHHHhhcCCCCCccc
Q 044318 130 KSGIDRCVICQVEYE-EGESIVALLPCEHLYHSECISNWLQIKKICPICS 178 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~-~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR 178 (195)
......|+.|...|- ..........|.|..|..|-..-....-.|-+|-
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~~~~~W~C~VC~ 71 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQESNGTWRCKVCS 71 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEECSTTCEEEHHHH
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhcccccccCCCCCEEEeeCc
Confidence 567789999999873 2222234447999999888543222223466663
No 210
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=41.24 E-value=8.2 Score=24.97 Aligned_cols=18 Identities=17% Similarity=0.056 Sum_probs=12.2
Q ss_pred HHHhhcCCCCCccccccC
Q 044318 165 SNWLQIKKICPICSTEAS 182 (195)
Q Consensus 165 ~~Wl~~~~sCPvCR~~l~ 182 (195)
.+||..--.||+|+.++.
T Consensus 4 d~~LLeiL~CP~ck~~L~ 21 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLR 21 (67)
T ss_dssp CGGGTCCCBCTTTCCBCE
T ss_pred CHHHHHHhCCCCCCCcCe
Confidence 456666667888887664
No 211
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=40.66 E-value=6.7 Score=27.55 Aligned_cols=45 Identities=13% Similarity=0.219 Sum_probs=27.0
Q ss_pred ccccccccccCCceeEEecCccceechhhHHHHhh----c----CCCCCcccc
Q 044318 135 RCVICQVEYEEGESIVALLPCEHLYHSECISNWLQ----I----KKICPICST 179 (195)
Q Consensus 135 ~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~----~----~~sCPvCR~ 179 (195)
.|..|.........++....|...||..|+..... . ...||.|+.
T Consensus 61 ~c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 61 EVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp CBCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred cccccccccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 34444444444444555558999999999864321 1 135999974
No 212
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=39.44 E-value=8.8 Score=24.94 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=11.2
Q ss_pred HHhhcCCCCCccccccC
Q 044318 166 NWLQIKKICPICSTEAS 182 (195)
Q Consensus 166 ~Wl~~~~sCPvCR~~l~ 182 (195)
.||..--.||+|+.++.
T Consensus 3 ~~LLeiL~CP~ck~~L~ 19 (69)
T 2pk7_A 3 TKLLDILACPICKGPLK 19 (69)
T ss_dssp CCGGGTCCCTTTCCCCE
T ss_pred hHHHhheeCCCCCCcCe
Confidence 45555567888887664
No 213
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=38.30 E-value=5 Score=27.09 Aligned_cols=11 Identities=27% Similarity=0.700 Sum_probs=6.7
Q ss_pred ccccccccccc
Q 044318 134 DRCVICQVEYE 144 (195)
Q Consensus 134 ~~C~ICl~~f~ 144 (195)
..||.|...+.
T Consensus 3 ~~CP~C~~~l~ 13 (81)
T 2jrp_A 3 ITCPVCHHALE 13 (81)
T ss_dssp CCCSSSCSCCE
T ss_pred CCCCCCCCccc
Confidence 45777766653
No 214
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=38.10 E-value=28 Score=25.76 Aligned_cols=46 Identities=20% Similarity=0.364 Sum_probs=31.5
Q ss_pred CcccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCCC
Q 044318 133 IDRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPP 184 (195)
Q Consensus 133 ~~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~ 184 (195)
-..|..|...+.... . . .=+..||..|..+-+ ...|..|...|...
T Consensus 33 CF~C~~C~~~L~~~~--f-~-~~g~~yC~~~y~~~f--~~~C~~C~~~I~~~ 78 (169)
T 2rgt_A 33 CLKCSDCHVPLAERC--F-S-RGESVYCKDDFFKRF--GTKCAACQLGIPPT 78 (169)
T ss_dssp TSBCTTTCCBCCSCC--E-E-SSSCEECHHHHHHHH--SCBCTTTCCBCCTT
T ss_pred cCccCCCCCcCCCCC--c-c-cCCeeeecccccccc--cccccccccccCCC
Confidence 457888877776542 1 2 456788888876643 46799999888654
No 215
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=36.35 E-value=37 Score=28.72 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=26.5
Q ss_pred CCCCccccccccccc-CCceeEEecCccceechhhHHH
Q 044318 130 KSGIDRCVICQVEYE-EGESIVALLPCEHLYHSECISN 166 (195)
Q Consensus 130 ~~~~~~C~ICl~~f~-~~~~~~~L~~C~H~FH~~CI~~ 166 (195)
......|.+|...|. ..........||..+|..|...
T Consensus 354 ~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 354 FEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp CSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred CCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence 445678999998874 2233334448999999999875
No 216
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=36.31 E-value=23 Score=26.59 Aligned_cols=40 Identities=20% Similarity=0.659 Sum_probs=24.3
Q ss_pred cccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCC
Q 044318 134 DRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASP 183 (195)
Q Consensus 134 ~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~ 183 (195)
..|..|-..+...+.++. .-+..||..|. .|-.|++.|..
T Consensus 120 ~kC~~C~~~I~~~~~v~~--a~~~~~H~~CF--------~C~~C~~~L~~ 159 (182)
T 2jtn_A 120 TKCAACQLGIPPTQVVRR--AQDFVYHLHCF--------ACVVCKRQLAT 159 (182)
T ss_dssp CCCTTTCCCCCSSCCCCE--ETTEECCTTTC--------CCTTTCCCCCT
T ss_pred cccccCCCccCCCceEEe--cCCCCEEeCCC--------cCCCCCCCCCC
Confidence 456666665544332221 24567777775 79999888864
No 217
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.29 E-value=13 Score=24.08 Aligned_cols=47 Identities=23% Similarity=0.414 Sum_probs=27.0
Q ss_pred CCcccccccccccCCceeEEecCc---cceechhhHHHHh--hcCCCCCcccccc
Q 044318 132 GIDRCVICQVEYEEGESIVALLPC---EHLYHSECISNWL--QIKKICPICSTEA 181 (195)
Q Consensus 132 ~~~~C~ICl~~f~~~~~~~~L~~C---~H~FH~~CI~~Wl--~~~~sCPvCR~~l 181 (195)
....| ||.... .+ ..+..-.| ...||..|+.--- ...-.||.|+...
T Consensus 5 ~~~yC-~C~~~~-~g-~MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 5 SSGYC-ICNQVS-YG-EMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCCCS-TTSCCC-CS-SEECCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred CCeEE-EcCCCC-CC-CEeEeCCCCCCccCCcccccccCcCCCCCEECCCCCccc
Confidence 34455 587653 33 33333344 3789999996211 1234699997654
No 218
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=34.31 E-value=23 Score=25.03 Aligned_cols=24 Identities=17% Similarity=0.683 Sum_probs=16.5
Q ss_pred EecCccceechhhHHHHhhcCC-CCCccccc
Q 044318 151 ALLPCEHLYHSECISNWLQIKK-ICPICSTE 180 (195)
Q Consensus 151 ~L~~C~H~FH~~CI~~Wl~~~~-sCPvCR~~ 180 (195)
....|||.|-.. .... .||.|..+
T Consensus 75 ~C~~CG~~~e~~------~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 75 ECKDCSHVFKPN------ALDYGVCEKCHSK 99 (119)
T ss_dssp ECSSSSCEECSC------CSTTCCCSSSSSC
T ss_pred EcCCCCCEEeCC------CCCCCcCccccCC
Confidence 334788888752 3356 79999775
No 219
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=32.96 E-value=8.2 Score=25.00 Aligned_cols=16 Identities=13% Similarity=0.254 Sum_probs=9.1
Q ss_pred HhhcCCCCCccccccC
Q 044318 167 WLQIKKICPICSTEAS 182 (195)
Q Consensus 167 Wl~~~~sCPvCR~~l~ 182 (195)
||..--.||+|+.++.
T Consensus 4 ~LL~iL~CP~ck~~L~ 19 (68)
T 2jr6_A 4 KFLDILVCPVTKGRLE 19 (68)
T ss_dssp SSSCCCBCSSSCCBCE
T ss_pred HHhhheECCCCCCcCe
Confidence 3444456777776653
No 220
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=31.60 E-value=46 Score=23.07 Aligned_cols=45 Identities=13% Similarity=0.245 Sum_probs=20.6
Q ss_pred cccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccCC
Q 044318 134 DRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEASP 183 (195)
Q Consensus 134 ~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~ 183 (195)
..|..|...+..... .. .=+..||..|..+- ....|+.|.++|.+
T Consensus 31 F~C~~C~~~L~~~~f--~~-~~g~~yC~~cy~~~--~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 31 FCCFDCDSILAGEIY--VM-VNDKPVCKPCYVKN--HAVVCQGCHNAIDP 75 (126)
T ss_dssp SBCTTTCCBCTTSEE--EE-ETTEEEEHHHHHHH--SCCBCTTTCSBCCT
T ss_pred CCcCCCCCCCCcCEE--Ee-ECCEEechHHhCcC--cCccCcccCCcCCc
Confidence 455555555543211 11 23455555555432 23445666555543
No 221
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=31.57 E-value=8.5 Score=23.90 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=11.3
Q ss_pred HHhhcCCCCCccccccC
Q 044318 166 NWLQIKKICPICSTEAS 182 (195)
Q Consensus 166 ~Wl~~~~sCPvCR~~l~ 182 (195)
+|+..--.||+|+.++.
T Consensus 5 ~~lL~iL~CP~c~~~L~ 21 (56)
T 2kpi_A 5 AGLLEILACPACHAPLE 21 (56)
T ss_dssp CSCTTSCCCSSSCSCEE
T ss_pred HHHHhheeCCCCCCcce
Confidence 45555567888888753
No 222
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=31.12 E-value=29 Score=26.21 Aligned_cols=49 Identities=14% Similarity=0.308 Sum_probs=31.5
Q ss_pred cccccccccccC-CceeEEecCccceechhhHHHHhhcCCCCCccccccCCC
Q 044318 134 DRCVICQVEYEE-GESIVALLPCEHLYHSECISNWLQIKKICPICSTEASPP 184 (195)
Q Consensus 134 ~~C~ICl~~f~~-~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~~~ 184 (195)
..|..|...+.. +..... .=+..||..|..+-+..+..|+.|.+.|...
T Consensus 33 F~C~~C~~~L~~~g~~~~~--~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~ 82 (188)
T 1rut_X 33 LKCSSCQAQLGDIGTSSYT--KSGMILCRNDYIRLFGNSGACSACGQSIPAS 82 (188)
T ss_dssp CBCTTTCCBHHHHCSEEEE--ETTEEECHHHHHHHHSCCEECTTTCCEECTT
T ss_pred cccCCCCcccccCCceEEE--eCCccccccccccccccCCccccCCCccccC
Confidence 567777766654 222221 3467788888777554444799999988653
No 223
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=30.37 E-value=8.9 Score=26.78 Aligned_cols=40 Identities=23% Similarity=0.495 Sum_probs=26.0
Q ss_pred cccccccccccCCceeEEecCccceechhhHHHHhhcCCCCCccccccC
Q 044318 134 DRCVICQVEYEEGESIVALLPCEHLYHSECISNWLQIKKICPICSTEAS 182 (195)
Q Consensus 134 ~~C~ICl~~f~~~~~~~~L~~C~H~FH~~CI~~Wl~~~~sCPvCR~~l~ 182 (195)
..||+|..++.- .=++.+|..|-.. ++....||-|..+|.
T Consensus 33 ~~CP~Cq~eL~~--------~g~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ--------DNGHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE--------ETTEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred ccCccCCCccee--------cCCEEECccccch-hhccccCcchhhHHH
Confidence 789999877532 1234456777554 455567999988763
No 224
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=29.08 E-value=49 Score=22.86 Aligned_cols=28 Identities=25% Similarity=0.576 Sum_probs=19.1
Q ss_pred CccceechhhHH------HHhhc-----CCCCCcccccc
Q 044318 154 PCEHLYHSECIS------NWLQI-----KKICPICSTEA 181 (195)
Q Consensus 154 ~C~H~FH~~CI~------~Wl~~-----~~sCPvCR~~l 181 (195)
.|++.||..|+. +-+.. ...||.|....
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~ 45 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 45 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTS
T ss_pred cCCCccCCcccccCHHHHHHHhhccccceeeCccccccc
Confidence 699999999962 11221 36899997543
No 225
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=29.00 E-value=9 Score=24.96 Aligned_cols=16 Identities=25% Similarity=0.584 Sum_probs=8.6
Q ss_pred HhhcCCCCCccccccC
Q 044318 167 WLQIKKICPICSTEAS 182 (195)
Q Consensus 167 Wl~~~~sCPvCR~~l~ 182 (195)
||..--.||+|+.++.
T Consensus 4 ~LL~iL~CP~ck~~L~ 19 (70)
T 2js4_A 4 RLLDILVCPVCKGRLE 19 (70)
T ss_dssp CCCCCCBCTTTCCBEE
T ss_pred HHhhheECCCCCCcCE
Confidence 3333445777766553
No 226
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=28.72 E-value=8.3 Score=25.00 Aligned_cols=11 Identities=27% Similarity=0.930 Sum_probs=6.3
Q ss_pred CCCCccccccC
Q 044318 172 KICPICSTEAS 182 (195)
Q Consensus 172 ~sCPvCR~~l~ 182 (195)
-.||+|+.++.
T Consensus 9 L~CP~ck~~L~ 19 (68)
T 2hf1_A 9 LVCPLCKGPLV 19 (68)
T ss_dssp CBCTTTCCBCE
T ss_pred eECCCCCCcCe
Confidence 45666666543
No 227
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=28.33 E-value=15 Score=25.47 Aligned_cols=12 Identities=42% Similarity=1.049 Sum_probs=7.8
Q ss_pred CCCCCccccccC
Q 044318 171 KKICPICSTEAS 182 (195)
Q Consensus 171 ~~sCPvCR~~l~ 182 (195)
...||+|..++.
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 345788876664
No 228
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=24.45 E-value=18 Score=18.93 Aligned_cols=11 Identities=27% Similarity=0.908 Sum_probs=7.5
Q ss_pred CCCccccccCC
Q 044318 173 ICPICSTEASP 183 (195)
Q Consensus 173 sCPvCR~~l~~ 183 (195)
.||+|....+.
T Consensus 8 qcpvcqq~mpa 18 (29)
T 3vhs_A 8 QCPVCQQMMPA 18 (29)
T ss_dssp ECTTTCCEEEG
T ss_pred eChHHHHhCcH
Confidence 58888766543
No 229
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=24.38 E-value=8.1 Score=19.70 Aligned_cols=13 Identities=23% Similarity=0.818 Sum_probs=9.7
Q ss_pred ceechhhHHHHhh
Q 044318 157 HLYHSECISNWLQ 169 (195)
Q Consensus 157 H~FH~~CI~~Wl~ 169 (195)
..||..|-..||.
T Consensus 5 dffcetcskpwlv 17 (26)
T 1loi_A 5 DFFCETCSKPWLV 17 (26)
T ss_dssp HHHHHTSSCTTGG
T ss_pred HHHHHhcCCchhh
Confidence 3588888888874
No 230
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=22.84 E-value=15 Score=26.65 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=21.6
Q ss_pred cCccceechhhHHHHhhc-----CCCCCccccc
Q 044318 153 LPCEHLYHSECISNWLQI-----KKICPICSTE 180 (195)
Q Consensus 153 ~~C~H~FH~~CI~~Wl~~-----~~sCPvCR~~ 180 (195)
..|.|+++..++..|-.. ...|+.|+..
T Consensus 5 ~~C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~ 37 (126)
T 2i50_A 5 PVCRHIRKGLEQGNLKKALVNVEWNICQDCKTD 37 (126)
T ss_dssp CCCSCHHHHCCHHHHHHHHSSCCSSSCHHHHTC
T ss_pred CCCcChhhccccccccccccCCCCCcCcccccc
Confidence 389999999999887532 2579999864
No 231
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=21.85 E-value=33 Score=22.17 Aligned_cols=7 Identities=43% Similarity=1.597 Sum_probs=6.2
Q ss_pred CCCcccc
Q 044318 173 ICPICST 179 (195)
Q Consensus 173 sCPvCR~ 179 (195)
.||+|..
T Consensus 42 ~CP~Cga 48 (70)
T 1dx8_A 42 MCPACRS 48 (70)
T ss_dssp BCTTTCC
T ss_pred cCCCCCC
Confidence 7999976
No 232
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=21.65 E-value=26 Score=20.07 Aligned_cols=14 Identities=29% Similarity=0.477 Sum_probs=12.1
Q ss_pred ccchHHHHHHHHHH
Q 044318 3 QVSSDFAMAMALQE 16 (195)
Q Consensus 3 ~~~~~~~~~~~~~~ 16 (195)
|-+.||-+|+-||+
T Consensus 25 ~EH~D~H~A~~Lq~ 38 (39)
T 2i5o_A 25 PEHMDYHFALELQK 38 (39)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHhc
Confidence 55789999999996
No 233
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=21.32 E-value=43 Score=20.27 Aligned_cols=8 Identities=38% Similarity=1.539 Sum_probs=6.5
Q ss_pred CCCccccc
Q 044318 173 ICPICSTE 180 (195)
Q Consensus 173 sCPvCR~~ 180 (195)
.||+|...
T Consensus 37 ~CP~Cg~~ 44 (52)
T 1yk4_A 37 VCPLCGAP 44 (52)
T ss_dssp BCTTTCCB
T ss_pred cCCCCCCC
Confidence 79999763
No 234
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=20.16 E-value=27 Score=22.61 Aligned_cols=11 Identities=27% Similarity=0.758 Sum_probs=9.1
Q ss_pred CCCCccccccC
Q 044318 172 KICPICSTEAS 182 (195)
Q Consensus 172 ~sCPvCR~~l~ 182 (195)
..||+|++++.
T Consensus 10 ~~CP~Cgkp~~ 20 (68)
T 1lv3_A 10 VNCPTCGKTVV 20 (68)
T ss_dssp EECTTTCCEEE
T ss_pred CcCCCCCCccc
Confidence 46999999875
Done!