BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044321
(521 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 93/248 (37%), Gaps = 33/248 (13%)
Query: 174 LKDVSGIIRPGRMTLLLGPPGSVKTTXXXXXXXXXXXXXXNRCDISQHDVHIGEMTVRET 233
++ VS IR G M LLGP GS KTT ++ DV IG V +
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP--------TKGDVWIGGKRVTDL 82
Query: 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKIL 293
V Y + +T + ++ ++ E+ +L+ +
Sbjct: 83 PPQKRNVGLVFQNYALFQHMTVYD---------NVSFGLREKRVPKDEMDARVRELLRFM 133
Query: 294 GLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQF- 352
L+ A+ + +SGGQ++RV L Q L DE + QI LR F
Sbjct: 134 RLESYANRFPHE-----LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFV 188
Query: 353 --IHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFECPKRK 410
+H G + + E ++ D ++++ G++ G E V +E P
Sbjct: 189 RQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEV--------YEKPGTL 240
Query: 411 GVADFLQE 418
VA F+ E
Sbjct: 241 FVASFIGE 248
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Query: 300 DTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIH-ILEG 358
+T+VG++ G+SGGQR+R+ LV + L DE +++ ++ + + + +H I +G
Sbjct: 130 NTIVGEQ-GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKG 188
Query: 359 TILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396
+I ++ T D II++ G IV QG + +L
Sbjct: 189 RTVI-IIAARLSTVKNADRIIVMEKGKIVEQGKHKELL 225
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Query: 300 DTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIH-ILEG 358
+T+VG++ G+SGGQR+R+ LV + L DE +++ ++ + + + +H I +G
Sbjct: 136 NTIVGEQ-GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKG 194
Query: 359 TILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396
+I ++ T D II++ G IV QG + +L
Sbjct: 195 RTVI-IIAARLSTVKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Query: 300 DTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIH-ILEG 358
+T+VG++ G+SGGQR+R+ LV + L DE +++ ++ + + + +H I +G
Sbjct: 132 NTIVGEQ-GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKG 190
Query: 359 TILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396
+I ++ T D II++ G IV QG + +L
Sbjct: 191 RTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 227
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Query: 300 DTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIH-ILEG 358
+T+VG++ G+SGGQR+R+ LV + L DE +++ ++ + + + +H I +G
Sbjct: 130 NTIVGEQ-GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKG 188
Query: 359 TILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396
+I ++ T D II++ G IV QG + +L
Sbjct: 189 RTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 225
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Query: 300 DTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIH-ILEG 358
+T+VG++ G+SGGQR+R+ LV + L DE +++ ++ + + + +H I +G
Sbjct: 136 NTIVGEQ-GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKG 194
Query: 359 TILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396
+I ++ T D II++ G IV QG + +L
Sbjct: 195 RTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Query: 300 DTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIH-ILEG 358
+T+VG++ G+SGGQR+R+ LV + L DE +++ ++ + + + +H I +G
Sbjct: 132 NTIVGEQ-GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKG 190
Query: 359 TILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396
+I ++ T D II++ G IV QG + +L
Sbjct: 191 RTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 227
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 99/223 (44%), Gaps = 26/223 (11%)
Query: 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTXXXXXXXXXXXXXXNRCDISQHDVHIGEMTVRE 232
ILKD++ I G +G G K+T D++ + I +++
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF--------YDVTSGQILIDGHNIKD 407
Query: 233 TLAFSARCQ-GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILK 291
L S R Q G+ + +L T +E +P + ++AA D+I+
Sbjct: 408 FLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAH-----DFIMN 462
Query: 292 ILGLDVCADTMVGDEILRGI--SGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSL 349
L DT VG+ RG+ SGGQ++R++ + + L +DE +++ + + +
Sbjct: 463 ---LPQGYDTEVGE---RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESII 516
Query: 350 RQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390
++ + +L + T LI + + T+ D I++I NGHIV G
Sbjct: 517 QEALDVLSKDRTTLIVAHRLSTITHA--DKIVVIENGHIVETG 557
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 99/249 (39%), Gaps = 46/249 (18%)
Query: 161 LNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTXXXXXXXXXXXXXXNRCDISQ 220
LN + R +LKDV+ G++ +++G GS KTT D S
Sbjct: 14 LNSVSFRYNGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAAGEIFLDGSP 73
Query: 221 HDVHIGEMTVRETLAF---SARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAAT 277
D + +R+ + + + Q +G+ E D+ ++
Sbjct: 74 ADPFL----LRKNVGYVFQNPSSQIIGATVE-----------------EDVAFSLEIMGL 112
Query: 278 EGQEVSVITDYILKILGLD--VCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMD 335
+ E+ +L+++GL AD + +SGGQ++R+ ML + L +D
Sbjct: 113 DESEMRKRIKKVLELVGLSGLAAADPL-------NLSGGQKQRLAIASMLARDTRFLALD 165
Query: 336 E-------ISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVY 388
E S FQ++ SL+ EG +I L+ E D D I+ ISNG I +
Sbjct: 166 EPVSMLDPPSQREIFQVLESLKN-----EGKGII-LVTHELEYLDDMDFILHISNGTIDF 219
Query: 389 QGPREYVLE 397
G E +E
Sbjct: 220 CGSWEEFVE 228
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Query: 300 DTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIH-ILEG 358
+T+VG++ G+SGGQR+R+ LV + L D+ +++ ++ + + + +H I +G
Sbjct: 136 NTIVGEQ-GAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICKG 194
Query: 359 TILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396
+I ++ T D II++ G IV QG + +L
Sbjct: 195 RTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 96/249 (38%), Gaps = 33/249 (13%)
Query: 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTXXXXXXXXXXXXXXNRCDISQHDVHIGEMTV 230
+ + KD++ I G + +GP G K+T I+ D+ IGE +
Sbjct: 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--------ITSGDLFIGEKRM 67
Query: 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYIL 290
+T V Y + L+ E ++ +K A + + ++ + +
Sbjct: 68 NDTPPAERGVGMVFQSYALYPHLSVAE---------NMSFGLKLAGAKKEVINQRVNQVA 118
Query: 291 KILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLR 350
++L L + D + +SGGQR+RV G LV +DE ++ + +R
Sbjct: 119 EVLQL-----AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 173
Query: 351 ---QFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFECP 407
+H G +I + E L D I+++ G + G LE + + P
Sbjct: 174 IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG---KPLELYHY-----P 225
Query: 408 KRKGVADFL 416
+ VA F+
Sbjct: 226 ADRFVAGFI 234
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 96/249 (38%), Gaps = 33/249 (13%)
Query: 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTXXXXXXXXXXXXXXNRCDISQHDVHIGEMTV 230
+ + KD++ I G + +GP G K+T I+ D+ IGE +
Sbjct: 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--------ITSGDLFIGEKRM 67
Query: 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYIL 290
+T V Y + L+ E ++ +K A + + ++ + +
Sbjct: 68 NDTPPAERGVGMVFQSYALYPHLSVAE---------NMSFGLKLAGAKKEVINQRVNQVA 118
Query: 291 KILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLR 350
++L L + D + +SGGQR+RV G LV +DE ++ + +R
Sbjct: 119 EVLQL-----AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 173
Query: 351 ---QFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFECP 407
+H G +I + E L D I+++ G + G LE + + P
Sbjct: 174 IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKP---LELYHY-----P 225
Query: 408 KRKGVADFL 416
+ VA F+
Sbjct: 226 ADRFVAGFI 234
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 96/249 (38%), Gaps = 33/249 (13%)
Query: 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTXXXXXXXXXXXXXXNRCDISQHDVHIGEMTV 230
+ + KD++ I G + +GP G K+T I+ D+ IGE +
Sbjct: 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--------ITSGDLFIGEKRM 67
Query: 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYIL 290
+T V Y + L+ E ++ +K A + + ++ + +
Sbjct: 68 NDTPPAERGVGMVFQSYALYPHLSVAE---------NMSFGLKLAGAKKEVINQRVNQVA 118
Query: 291 KILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLR 350
++L L + D + +SGGQR+RV G LV +D+ ++ + +R
Sbjct: 119 EVLQL-----AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMR 173
Query: 351 ---QFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFECP 407
+H G +I + E L D I+++ G + G LE + + P
Sbjct: 174 IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKP---LELYHY-----P 225
Query: 408 KRKGVADFL 416
+ VA F+
Sbjct: 226 ADRFVAGFI 234
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 16/177 (9%)
Query: 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTXXXXXXXXXXXXXXNRCDISQHDV- 223
P+R + + I +D S I G +T L+GP GS K+T + HD+
Sbjct: 352 PARPE-VPIFQDFSLSIPSGSVTALVGPSGSGKST-VLSLLLRLYDPASGTISLDGHDIR 409
Query: 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVS 283
+ + +R + G S+ +L + E A DP A E Q V+
Sbjct: 410 QLNPVWLRSKI-------GTVSQEPILFSCSIAENIAYGADDPS-----SVTAEEIQRVA 457
Query: 284 VITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNS 340
+ + + I +T+VG++ + +SGGQ++R+ L+ + L +DE +++
Sbjct: 458 EVANAVAFIRNFPQGFNTVVGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSA 513
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 101 YNEEF---LLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGF 157
Y+ +F L +L N+ + ++L + E FE L++E E + P V G
Sbjct: 302 YSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEE-----KDDPDAVELRE--VRGE 354
Query: 158 LNSLNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTT 199
+ N+ S K +LKD++ I+PG+ L+GP GS KTT
Sbjct: 355 IEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTT 396
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 101/233 (43%), Gaps = 26/233 (11%)
Query: 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTXXXXXXXXXXXXXXNRCDISQHDVHIGEMTVRE 232
+L V+ ++PG + +LG GS K+T D + V + E+ VR
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRL--------IDPERGRVEVDELDVRT 409
Query: 233 TLAFSARCQGVGSRYE-MLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILK 291
R E +L T +E + D D ++AA +++ I D+I+
Sbjct: 410 VKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAA-----KIAQIHDFIIS 464
Query: 292 ILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNS----TTFQIVN 347
L D+ V + R SGGQ++R++ LV + L +D+ ++S T +I++
Sbjct: 465 ---LPEGYDSRV-ERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILD 520
Query: 348 SLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFK 400
L+++ +G + Q P T L D I+++ G + G + +LE K
Sbjct: 521 GLKRYT---KGCTTFIITQKIP-TALLADKILVLHEGKVAGFGTHKELLEHCK 569
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 16/177 (9%)
Query: 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTXXXXXXXXXXXXXXNRCDISQHDV- 223
P+R + + I +D S I G +T L+GP GS K+T + HD+
Sbjct: 383 PARPE-VPIFQDFSLSIPSGSVTALVGPSGSGKST-VLSLLLRLYDPASGTISLDGHDIR 440
Query: 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVS 283
+ + +R + G S+ +L + E A DP A E Q V+
Sbjct: 441 QLNPVWLRSKI-------GTVSQEPILFSCSIAENIAYGADDPS-----SVTAEEIQRVA 488
Query: 284 VITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNS 340
+ + + I +T+VG++ + +SGGQ++R+ L+ + L +DE +++
Sbjct: 489 EVANAVAFIRNFPQGFNTVVGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSA 544
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 300 DTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGT 359
DT++G E +SGGQR+RV L+ A L +DE +++ + +++ + L+
Sbjct: 471 DTVIG-ENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKN 529
Query: 360 ILISLLQPAPETYDLFDDIILISNGHIVYQG 390
+ ++ T + D+I+++ G I+ +G
Sbjct: 530 KTVLVIAHRLSTIEQADEILVVDEGEIIERG 560
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 300 DTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGT 359
DT+VG++ ++ +SGG+R+R+ L+ + + DE ++S + ++ + L
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKN 204
Query: 360 ILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEF 398
+ ++ T + IIL++ G IV +G + +L+
Sbjct: 205 RTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL 243
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 278 EGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEI 337
E ++ D+I K +D DT++G+ + +SGGQR+R+ L+ + L +DE
Sbjct: 452 EAARMAYAMDFINK---MDNGLDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEA 507
Query: 338 SNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLE 397
+++ + +++ + L+ ++ T + D+I+++ +G IV +G +LE
Sbjct: 508 TSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLE 567
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 14/131 (10%)
Query: 311 ISGGQRKRVTTGEMLVGPAQALFMDEISN----STTFQIVNSLRQFIHILEGTILISLLQ 366
+SGGQ++RV L + L DE ++ +TT I+ L+ L TIL+ +
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILL-ITH 199
Query: 367 PAPETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQEVTSQKEQQ 426
+ D + +ISNG ++ Q + V E F PK F+Q +
Sbjct: 200 EMDVVKRICDCVAVISNGELIEQ---DTVSEVFSH-----PKTPLAQKFIQSTLHLDIPE 251
Query: 427 QYWAR-EEEPY 436
Y R + EP+
Sbjct: 252 DYQERLQAEPF 262
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPA 368
R +SGGQ++RV LV L +DE ++ ++ +S R + ++ + ++LL +
Sbjct: 139 RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198
Query: 369 PETYDLF---DDIILISNGHIVYQGPRE 393
+ D+F D + ++ G +V G E
Sbjct: 199 HDPADIFAIADRVGVLVKGKLVQVGKPE 226
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 16/176 (9%)
Query: 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTXXXXXXXXXXXXXXNRCDISQHDVH 224
P+R L +L+ ++ +RPG +T L+GP GS K+T Q +
Sbjct: 25 PNRPDVL-VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG------GQLLLD 77
Query: 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSV 284
+ E + VG ++ + A G+ P ++ AA G S
Sbjct: 78 GKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAH-SF 136
Query: 285 ITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNS 340
I+ GL DT V DE +SGGQR+ V L+ L +D+ +++
Sbjct: 137 IS-------GLPQGYDTEV-DEAGSQLSGGQRQAVALARALIRKPCVLILDDATSA 184
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 65/172 (37%), Gaps = 23/172 (13%)
Query: 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTXXXXXXXXXXXXXXNRC----DISQHDVHIGEM 228
+L+ ++ + PG++T L+GP GS K+T + Q+D H
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHY--- 90
Query: 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDY 288
+ VG + R A G+ P ++ A G D+
Sbjct: 91 -------LHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAH-----DF 138
Query: 289 ILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNS 340
I G DT VG E +SGGQR+ V L+ + L +D+ +++
Sbjct: 139 IS---GFPQGYDTEVG-ETGNQLSGGQRQAVALARALIRKPRLLILDQATSA 186
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 14/131 (10%)
Query: 311 ISGGQRKRVTTGEMLVGPAQALFMDEISN----STTFQIVNSLRQFIHILEGTILISLLQ 366
+SGGQ++RV L + L D+ ++ +TT I+ L+ L TIL+ +
Sbjct: 164 LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILL-ITH 222
Query: 367 PAPETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQEVTSQKEQQ 426
+ D + +ISNG ++ Q + V E F PK F+Q +
Sbjct: 223 EXDVVKRICDCVAVISNGELIEQ---DTVSEVFSH-----PKTPLAQKFIQSTLHLDIPE 274
Query: 427 QYWAR-EEEPY 436
Y R + EP+
Sbjct: 275 DYQERLQAEPF 285
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 278 EGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEI 337
E ++ D+I K +D DT++G+ + +SGGQR+R+ L+ + L +DE
Sbjct: 452 EAARMAYAMDFINK---MDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEA 507
Query: 338 SNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396
+++ + +++ + L+ ++ T + D+I+++ +G IV +G +L
Sbjct: 508 TSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELL 566
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 14/131 (10%)
Query: 311 ISGGQRKRVTTGEMLVGPAQALFMDEISN----STTFQIVNSLRQFIHILEGTILISLLQ 366
+SGGQ++RV L + L D+ ++ +TT I+ L+ L TIL+ +
Sbjct: 164 LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILL-ITH 222
Query: 367 PAPETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQEVTSQKEQQ 426
+ D + +ISNG ++ Q + V E F PK F+Q +
Sbjct: 223 EMDVVKRICDCVAVISNGELIEQ---DTVSEVFSH-----PKTPLAQKFIQSTLHLDIPE 274
Query: 427 QYWAR-EEEPY 436
Y R + EP+
Sbjct: 275 DYQERLQAEPF 285
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 86/193 (44%), Gaps = 26/193 (13%)
Query: 154 VEGFLNSLNI---LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTXXXXXXXXXXX 210
++G L NI PSRK+ + ILK ++ ++ G+ L+G G K+T
Sbjct: 384 IQGNLEFKNIHFSYPSRKE-VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP 442
Query: 211 XXXNRCDISQHDVH-IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDID 269
I D+ I +RE + GV S+ +L T E + D +D
Sbjct: 443 LD-GMVSIDGQDIRTINVRYLREII-------GVVSQEPVLFATTIAENIRYGREDVTMD 494
Query: 270 VFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG--ISGGQRKRVTTGEMLVG 327
KA +E + D+I+K L DT+VG+ RG +SGGQ++R+ LV
Sbjct: 495 EIEKAV----KEANAY-DFIMK---LPHQFDTLVGE---RGAQLSGGQKQRIAIARALVR 543
Query: 328 PAQALFMDEISNS 340
+ L +DE +++
Sbjct: 544 NPKILLLDEATSA 556
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 86/193 (44%), Gaps = 26/193 (13%)
Query: 154 VEGFLNSLNI---LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTXXXXXXXXXXX 210
++G L NI PSRK+ + ILK ++ ++ G+ L+G G K+T
Sbjct: 384 IQGNLEFKNIHFSYPSRKE-VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP 442
Query: 211 XXXNRCDISQHDVH-IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDID 269
I D+ I +RE + GV S+ +L T E + D +D
Sbjct: 443 LD-GMVSIDGQDIRTINVRYLREII-------GVVSQEPVLFATTIAENIRYGREDVTMD 494
Query: 270 VFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG--ISGGQRKRVTTGEMLVG 327
KA +E + D+I+K L DT+VG+ RG +SGGQ++R+ LV
Sbjct: 495 EIEKAV----KEANAY-DFIMK---LPHQFDTLVGE---RGAQLSGGQKQRIAIARALVR 543
Query: 328 PAQALFMDEISNS 340
+ L +DE +++
Sbjct: 544 NPKILLLDEATSA 556
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 7/125 (5%)
Query: 269 DVFMKAAATEGQEVSVITDYI---LKILGLDVCADTMVGDEILRGISGGQRKRVTTGEML 325
+V MK A GQ + I +LGLD +V +RG+SGGQ+ ++
Sbjct: 860 EVDMKEALASGQFRPLTRKEIEEHCSMLGLD---PEIVSHSRIRGLSGGQKVKLVLAAGT 916
Query: 326 VGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGH 385
+ +DE +N + +L + + EG ++I + A T +L +++ + +G
Sbjct: 917 WQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVII-ITHSAEFTKNLTEEVWAVKDGR 975
Query: 386 IVYQG 390
+ G
Sbjct: 976 MTPSG 980
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 64/172 (37%), Gaps = 23/172 (13%)
Query: 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTXXXXXXXXXXXXXXNRC----DISQHDVHIGEM 228
+L+ ++ + PG++T L+GP GS K+T + Q+D H
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHY--- 90
Query: 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDY 288
+ VG + R A G+ P ++ A G D+
Sbjct: 91 -------LHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAH-----DF 138
Query: 289 ILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNS 340
I G DT VG E +SGGQR+ V L+ + L +D +++
Sbjct: 139 IS---GFPQGYDTEVG-ETGNQLSGGQRQAVALARALIRKPRLLILDNATSA 186
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 15/113 (13%)
Query: 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTF-QIVNSLRQFIHILEGTILISLLQ 366
++ +SGG+ +RV L+ A F DE S+ Q +N+ R + E + +++
Sbjct: 156 IQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVE 215
Query: 367 PAPETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFECPK--RKGVADFLQ 417
D DII H+VY P Y + F PK R G+ +FL+
Sbjct: 216 HDLAVLDYLSDII-----HVVYGEPGVYGI-------FSQPKGTRNGINEFLR 256
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 83/242 (34%), Gaps = 54/242 (22%)
Query: 174 LKDVSGIIRPGRMTLLLGPPGSVKTTXXXXXXXXXXXXXXNRCDISQHDV---------H 224
L VS + G +TL++GP GS K+T R D+ H
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE-GRVYFENKDITNKEPAELYH 81
Query: 225 IG------------EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFM 272
G EMTV E L C G P +F
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPG---------------------ESPLNSLFY 120
Query: 273 KAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQAL 332
K + +E+ IL+ L L D G+ +SGGQ K V G L+ + +
Sbjct: 121 KKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMI 175
Query: 333 FMDEISNSTTFQIVNSLRQFIHILE----GTILISLLQPAPETYDLFDDIILISNGHIVY 388
MDE + + + F H+LE G + + + D + ++ NG I+
Sbjct: 176 VMDEPIAGVAPGLAHDI--FNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 233
Query: 389 QG 390
+G
Sbjct: 234 EG 235
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPA 368
R +SG Q++RV LV L +DE ++ ++ +S R + ++ + ++LL +
Sbjct: 139 RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198
Query: 369 PETYDLF---DDIILISNGHIVYQGPRE 393
+ D+F D + ++ G +V G E
Sbjct: 199 HDPADIFAIADRVGVLVKGKLVQVGKPE 226
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLL---QP 367
+SGG+++RV LV + L +DE ++ + + R+ + +L +++L
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD 187
Query: 368 APETYDLFDDIILISNGHIVYQGPREYVLE------FFKFMGFE 405
E + D I ++ +G ++ G E + E F+GFE
Sbjct: 188 QTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASFVGFE 231
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPE 370
+SGG+R+RV LV + L +DE ++ + L + + ++ + +L
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH---V 183
Query: 371 TYDLF------DDIILISNGHIVYQG 390
T+DL D++ ++ NG IV +G
Sbjct: 184 THDLIEAAMLADEVAVMLNGRIVEKG 209
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 21/119 (17%)
Query: 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISN----STTFQIVNSLRQFIHILEGTI 360
D L +SGG+ +RV L+ A F DE S+ ++ +R+ + EG
Sbjct: 223 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN--EGKA 280
Query: 361 LISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFECPK--RKGVADFLQ 417
++ +++ D D+I H+VY P Y + F PK R G+ +FLQ
Sbjct: 281 VL-VVEHDLAVLDYLSDVI-----HVVYGEPGVYGI-------FSKPKGTRNGINEFLQ 326
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 21/119 (17%)
Query: 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISN----STTFQIVNSLRQFIHILEGTI 360
D L +SGG+ +RV L+ A F DE S+ ++ +R+ + EG
Sbjct: 209 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN--EGKA 266
Query: 361 LISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFECPK--RKGVADFLQ 417
++ +++ D D+I H+VY P Y + F PK R G+ +FLQ
Sbjct: 267 VL-VVEHDLAVLDYLSDVI-----HVVYGEPGVYGI-------FSKPKGTRNGINEFLQ 312
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 309 RGISGGQRKRVTTGEMLVGPAQALFMDE-ISN 339
R +SGGQR+RV G +V Q MDE +SN
Sbjct: 138 RELSGGQRQRVALGRAIVRKPQVFLMDEPLSN 169
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 293 LGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQF 352
LGLD +V +RG+SGGQ+ ++ + +DE +N + +L +
Sbjct: 881 LGLD---PEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKA 937
Query: 353 IHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390
+ EG ++I + A T +L +++ + +G G
Sbjct: 938 LKEFEGGVII-ITHSAEFTKNLTEEVWAVKDGRXTPSG 974
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 293 LGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQF 352
LGLD +V +RG+SGGQ+ ++ + +DE +N + +L +
Sbjct: 887 LGLD---PEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKA 943
Query: 353 IHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390
+ EG ++I + A T +L +++ + +G G
Sbjct: 944 LKEFEGGVII-ITHSAEFTKNLTEEVWAVKDGRXTPSG 980
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 50/111 (45%), Gaps = 10/111 (9%)
Query: 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPA 368
+SGGQ +RV L + + DE +++ ++V + + L EG ++ +
Sbjct: 139 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM 198
Query: 369 PETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQEV 419
++ D ++ + G+I+ +G E + F+ P+ + FL +V
Sbjct: 199 GFAREVGDRVLFMDGGYIIEEGKPEDL--------FDRPQHERTKAFLSKV 241
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 50/111 (45%), Gaps = 10/111 (9%)
Query: 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPA 368
+SGGQ +RV L + + DE +++ ++V + + L EG ++ +
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM 219
Query: 369 PETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQEV 419
++ D ++ + G+I+ +G E + F+ P+ + FL +V
Sbjct: 220 GFAREVGDRVLFMDGGYIIEEGKPEDL--------FDRPQHERTKAFLSKV 262
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILE---GTILISLLQP 367
+SGGQ++RV LV + L +DE ++ + +R + L+ G + +
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHD 193
Query: 368 APETYDLFDDIILISNGHIVYQG-PRE-YVLEFFKFMG 403
E + D I +I G I+ G P E Y +KF+G
Sbjct: 194 QAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKFVG 231
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
Query: 300 DTMVGDEILRG--ISGGQRKRVTTGEMLVGPAQALFMDEISNS 340
+T+VGD RG +SGGQ++R+ LV + L +DE +++
Sbjct: 545 NTLVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSA 584
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 93/241 (38%), Gaps = 50/241 (20%)
Query: 168 KKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTXXXXXXXXXXXXXXNRCDISQHDVHIGE 227
+ + ILK +S + PG+ L+GP G K+T +D GE
Sbjct: 1089 RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERF-------------YDTLGGE 1135
Query: 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDP---------------DIDVFM 272
+ + GS + L R + A + +P D
Sbjct: 1136 IFID------------GSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVT 1183
Query: 273 KAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG--ISGGQRKRVTTGEMLVGPAQ 330
A E ++ I ++I + L +T VGD RG +SGGQ++R+ LV +
Sbjct: 1184 MAQVEEAARLANIHNFIAE---LPEGFETRVGD---RGTQLSGGQKQRIAIARALVRNPK 1237
Query: 331 ALFMDEISNSTTFQIVNSLRQFI-HILEGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389
L +DE +++ + +++ + EG I + + D I ++SNG I+ +
Sbjct: 1238 ILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNA-DCIAVVSNGTIIEK 1296
Query: 390 G 390
G
Sbjct: 1297 G 1297
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 152 NIVEGFLNSLNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKT 198
++ + L + ILPS + L +G+ P R LL GPPG+ KT
Sbjct: 121 DLAKQALQEIVILPSLRPEL-----FTGLRAPARGLLLFGPPGNGKT 162
>pdb|3PDW|A Chain A, Crystal Structure Of Putative P-Nitrophenyl Phosphatase
From Bacillus Subtilis
Length = 266
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 279 GQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFM-DEI 337
G+ S+I + +++LG DV MVGD I G + T + G + M D++
Sbjct: 182 GKPESIIMEQAMRVLGTDVSETLMVGDNYATDIMAGINAGMDTLLVHTGVTKREHMTDDM 241
Query: 338 SNSTTFQIVNSLRQFIHILEG 358
T ++SL ++I +EG
Sbjct: 242 EKPT--HAIDSLTEWIPYIEG 260
>pdb|3QGM|A Chain A, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|B Chain B, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|C Chain C, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|D Chain D, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
Length = 268
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 279 GQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEIS 338
G+ VI L ILGLD +VGD+I ++ G+ T +L G +D+
Sbjct: 186 GKPSEVIXREALDILGLDAKDVAVVGDQIDVDVAAGKAIGAETVLVLTGVTTRENLDQXI 245
Query: 339 NSTTFQ---IVNSLRQFIHILEG 358
+ + NSL+ + LEG
Sbjct: 246 ERHGLKPDYVFNSLKDXVEALEG 268
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLL---QP 367
+SGGQR+RV +V L MDE ++ ++ ++R I L+ + ++ +
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD 201
Query: 368 APETYDLFDDIILISNGHIVYQG-PREYVL 396
E + D I +++ G ++ G P E L
Sbjct: 202 QVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLL---QP 367
+SGGQR+RV +V L MDE ++ ++ ++R I L+ + ++ +
Sbjct: 143 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD 202
Query: 368 APETYDLFDDIILISNGHIVYQG-PREYVL 396
E + D I +++ G ++ G P E L
Sbjct: 203 QVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 232
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 11/106 (10%)
Query: 289 ILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNS 348
IL+ L L D G+ +SGGQ K V G L+ + + MDE + +
Sbjct: 137 ILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD 191
Query: 349 LRQFIHILE----GTILISLLQPAPETYDLFDDIILISNGHIVYQG 390
+ F H+LE G + + + D + ++ NG I+ +G
Sbjct: 192 I--FNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 104/246 (42%), Gaps = 24/246 (9%)
Query: 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTXXXXXXXXXXXXXXNRCDISQHDVHIGEMTVR 231
TILK V+ ++ G + L+GP G+ K+T R +I +I E++
Sbjct: 17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV-ERGEILLDGENILELSPD 75
Query: 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAA--ATEGQEVSVITDY- 288
E AR +G+ ++ E+ P I F++ A A G+EV V +
Sbjct: 76 E----RAR-KGLFLAFQYPVEV----------PGVTIANFLRLALQAKLGREVGVAEFWT 120
Query: 289 -ILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVN 347
+ K L L ++ + + G SGG++KR ++LV +DE + +
Sbjct: 121 KVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALK 180
Query: 348 SLRQFIHILEGTILISLLQPAPE---TYDLFDDIILISNGHIVYQGPREYVLEFFKFMGF 404
+ + ++ + G +L+ + Y D + ++ +G +V G E LE + G+
Sbjct: 181 VVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALE-LEAKGY 239
Query: 405 ECPKRK 410
E K K
Sbjct: 240 EWLKEK 245
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,991,710
Number of Sequences: 62578
Number of extensions: 557797
Number of successful extensions: 1618
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 1561
Number of HSP's gapped (non-prelim): 96
length of query: 521
length of database: 14,973,337
effective HSP length: 103
effective length of query: 418
effective length of database: 8,527,803
effective search space: 3564621654
effective search space used: 3564621654
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)