Query 044321
Match_columns 521
No_of_seqs 706 out of 3660
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 13:31:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044321.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044321hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03140 ABC transporter G fam 100.0 2.3E-83 5E-88 762.5 42.0 490 30-520 24-550 (1470)
2 KOG0065 Pleiotropic drug resis 100.0 1.1E-76 2.4E-81 670.3 25.0 439 41-519 12-473 (1391)
3 TIGR00956 3a01205 Pleiotropic 100.0 9.6E-56 2.1E-60 527.3 39.2 390 101-520 4-436 (1394)
4 KOG0061 Transporter, ABC super 100.0 1.5E-51 3.2E-56 456.0 29.4 325 121-520 22-372 (613)
5 PLN03211 ABC transporter G-25; 100.0 1.5E-49 3.3E-54 443.8 34.1 359 121-520 36-423 (659)
6 TIGR00955 3a01204 The Eye Pigm 100.0 1.5E-49 3.2E-54 442.5 30.9 314 168-520 35-375 (617)
7 PLN03140 ABC transporter G fam 100.0 5E-48 1.1E-52 460.4 34.1 335 121-520 864-1227(1470)
8 KOG0065 Pleiotropic drug resis 100.0 4.3E-49 9.3E-54 446.6 19.0 306 168-520 801-1138(1391)
9 TIGR00956 3a01205 Pleiotropic 100.0 4.8E-46 1E-50 444.2 33.9 306 170-520 775-1112(1394)
10 COG1126 GlnQ ABC-type polar am 100.0 8E-46 1.7E-50 351.2 20.7 208 165-419 9-239 (240)
11 COG1135 AbcC ABC-type metal io 100.0 5.5E-42 1.2E-46 340.0 21.2 205 169-421 17-247 (339)
12 COG3839 MalK ABC-type sugar tr 100.0 1.1E-41 2.4E-46 348.1 20.0 198 173-417 18-235 (338)
13 COG3842 PotA ABC-type spermidi 100.0 5.5E-42 1.2E-46 352.2 17.7 205 168-419 15-240 (352)
14 COG1125 OpuBA ABC-type proline 100.0 6E-41 1.3E-45 324.0 18.8 190 168-396 11-224 (309)
15 COG1118 CysA ABC-type sulfate/ 100.0 6.8E-41 1.5E-45 331.5 17.7 210 165-419 9-241 (345)
16 COG1116 TauB ABC-type nitrate/ 100.0 2.4E-40 5.1E-45 321.8 18.9 177 171-387 16-212 (248)
17 COG1127 Ttg2A ABC-type transpo 100.0 4.4E-40 9.6E-45 316.5 20.2 192 168-397 18-235 (263)
18 COG1131 CcmA ABC-type multidru 100.0 6.8E-40 1.5E-44 333.6 22.6 198 165-401 11-230 (293)
19 COG1120 FepC ABC-type cobalami 100.0 5.4E-40 1.2E-44 324.3 20.6 190 170-396 14-227 (258)
20 COG4555 NatA ABC-type Na+ tran 100.0 5.7E-40 1.2E-44 307.6 15.7 194 165-397 9-222 (245)
21 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 5.1E-39 1.1E-43 316.0 21.0 189 172-396 18-226 (254)
22 COG1117 PstB ABC-type phosphat 100.0 1.9E-39 4.2E-44 306.7 17.2 204 169-417 18-249 (253)
23 TIGR03265 PhnT2 putative 2-ami 100.0 2.4E-38 5.3E-43 330.0 25.1 200 171-417 17-236 (353)
24 PRK11432 fbpC ferric transport 100.0 3.1E-38 6.7E-43 328.9 25.1 200 171-417 19-238 (351)
25 TIGR03258 PhnT 2-aminoethylpho 100.0 3.8E-38 8.2E-43 329.3 25.6 187 171-396 18-227 (362)
26 COG3638 ABC-type phosphate/pho 100.0 9.4E-39 2E-43 306.6 17.9 196 169-396 15-236 (258)
27 TIGR02314 ABC_MetN D-methionin 100.0 6E-38 1.3E-42 325.4 25.4 187 171-396 18-229 (343)
28 PRK11650 ugpC glycerol-3-phosp 100.0 2.8E-38 6E-43 329.9 22.3 187 171-396 17-223 (356)
29 PRK09452 potA putrescine/sperm 100.0 7.7E-38 1.7E-42 328.2 25.1 200 171-417 27-246 (375)
30 COG1136 SalX ABC-type antimicr 100.0 8.1E-38 1.8E-42 303.3 23.3 175 171-386 18-220 (226)
31 PRK13537 nodulation ABC transp 100.0 1.3E-37 2.8E-42 319.0 25.7 188 171-397 20-227 (306)
32 COG2274 SunT ABC-type bacterio 100.0 9.4E-38 2E-42 348.4 25.2 238 84-397 436-696 (709)
33 KOG0058 Peptide exporter, ABC 100.0 8.1E-38 1.8E-42 338.8 22.5 237 84-397 431-691 (716)
34 PRK10851 sulfate/thiosulfate t 100.0 3.2E-37 6.9E-42 321.6 25.4 204 171-417 15-238 (353)
35 PRK11607 potG putrescine trans 100.0 3.3E-37 7.2E-42 323.8 25.2 199 171-417 32-251 (377)
36 PRK11000 maltose/maltodextrin 100.0 3.9E-37 8.4E-42 323.0 25.3 187 171-396 16-222 (369)
37 COG0411 LivG ABC-type branched 100.0 3.5E-38 7.5E-43 304.7 15.7 205 164-396 10-238 (250)
38 cd03261 ABC_Org_Solvent_Resist 100.0 7.2E-37 1.6E-41 301.5 24.2 187 171-396 13-225 (235)
39 TIGR01186 proV glycine betaine 100.0 3.8E-37 8.3E-42 321.3 23.4 190 168-396 3-218 (363)
40 TIGR01188 drrA daunorubicin re 100.0 4.3E-37 9.3E-42 314.6 23.2 191 169-398 4-214 (302)
41 COG0410 LivF ABC-type branched 100.0 2.1E-37 4.6E-42 297.1 19.4 191 166-396 11-225 (237)
42 PRK13536 nodulation factor exp 100.0 8.6E-37 1.9E-41 316.9 25.4 189 170-397 53-261 (340)
43 COG1122 CbiO ABC-type cobalt t 100.0 4.9E-37 1.1E-41 302.1 21.2 188 171-397 17-228 (235)
44 COG1124 DppF ABC-type dipeptid 100.0 1.1E-36 2.3E-41 294.2 21.6 184 172-397 21-231 (252)
45 cd03265 ABC_DrrA DrrA is the A 100.0 1.8E-36 3.8E-41 295.8 23.4 186 171-395 13-219 (220)
46 PRK13643 cbiO cobalt transport 100.0 3.4E-36 7.3E-41 306.0 26.2 206 172-416 20-255 (288)
47 TIGR01288 nodI ATP-binding ABC 100.0 2.1E-36 4.6E-41 309.6 24.9 188 171-397 17-224 (303)
48 COG2884 FtsE Predicted ATPase 100.0 2.9E-37 6.2E-42 287.1 16.4 187 166-391 10-220 (223)
49 TIGR03522 GldA_ABC_ATP gliding 100.0 3.2E-36 6.9E-41 308.1 25.6 188 171-397 15-221 (301)
50 PRK13637 cbiO cobalt transport 100.0 3.8E-36 8.3E-41 305.5 25.8 200 171-409 20-249 (287)
51 PRK11153 metN DL-methionine tr 100.0 2.9E-36 6.3E-41 313.6 25.4 187 171-396 18-229 (343)
52 cd03296 ABC_CysA_sulfate_impor 100.0 4E-36 8.6E-41 297.1 24.5 190 171-395 15-224 (239)
53 PRK13651 cobalt transporter AT 100.0 4.7E-36 1E-40 307.2 25.8 203 172-413 21-273 (305)
54 COG1137 YhbG ABC-type (unclass 100.0 9.4E-38 2E-42 292.4 12.0 195 165-396 11-227 (243)
55 cd03259 ABC_Carb_Solutes_like 100.0 2.3E-36 5.1E-41 293.4 22.2 181 171-390 13-213 (213)
56 PRK13634 cbiO cobalt transport 100.0 5.1E-36 1.1E-40 305.0 25.3 200 171-409 20-250 (290)
57 cd03263 ABC_subfamily_A The AB 100.0 4.2E-36 9.2E-41 292.8 22.9 186 171-395 15-219 (220)
58 cd03219 ABC_Mj1267_LivG_branch 100.0 4.4E-36 9.4E-41 295.8 23.0 196 171-395 13-230 (236)
59 COG4175 ProV ABC-type proline/ 100.0 6.9E-37 1.5E-41 303.5 16.9 203 169-419 39-268 (386)
60 cd03218 ABC_YhbG The ABC trans 100.0 6.1E-36 1.3E-40 294.0 23.4 187 171-396 13-221 (232)
61 PRK13647 cbiO cobalt transport 100.0 9E-36 1.9E-40 300.8 24.9 197 172-407 19-239 (274)
62 PRK11174 cysteine/glutathione 100.0 1.3E-35 2.8E-40 329.3 28.1 237 84-397 314-572 (588)
63 PRK13650 cbiO cobalt transport 100.0 1.2E-35 2.6E-40 300.6 25.5 198 171-408 20-243 (279)
64 cd03258 ABC_MetN_methionine_tr 100.0 9.9E-36 2.1E-40 292.9 24.0 186 172-396 19-229 (233)
65 cd03301 ABC_MalK_N The N-termi 100.0 7.3E-36 1.6E-40 289.7 22.6 181 171-390 13-213 (213)
66 cd03293 ABC_NrtD_SsuB_transpor 100.0 9.2E-36 2E-40 290.8 22.8 183 171-392 17-218 (220)
67 TIGR00960 3a0501s02 Type II (G 100.0 1.2E-35 2.6E-40 289.0 22.7 177 171-386 16-216 (216)
68 PRK13646 cbiO cobalt transport 100.0 2.3E-35 5E-40 299.6 25.8 199 171-408 20-249 (286)
69 cd03294 ABC_Pro_Gly_Bertaine T 100.0 9E-36 2E-40 300.0 22.6 194 164-396 30-249 (269)
70 PRK10070 glycine betaine trans 100.0 2E-35 4.3E-40 311.9 26.0 189 169-396 39-253 (400)
71 cd03224 ABC_TM1139_LivF_branch 100.0 1.3E-35 2.7E-40 289.7 22.4 185 171-396 13-220 (222)
72 PRK11264 putative amino-acid A 100.0 3.1E-35 6.6E-40 292.4 25.5 187 171-396 16-232 (250)
73 COG1132 MdlB ABC-type multidru 100.0 1.7E-35 3.7E-40 327.1 26.0 237 84-397 295-552 (567)
74 cd03295 ABC_OpuCA_Osmoprotecti 100.0 2.4E-35 5.3E-40 292.0 24.2 187 171-396 14-224 (242)
75 PRK09493 glnQ glutamine ABC tr 100.0 2.9E-35 6.4E-40 290.9 24.7 187 171-396 14-224 (240)
76 PRK09536 btuD corrinoid ABC tr 100.0 1.9E-35 4.1E-40 312.2 24.6 192 170-396 15-227 (402)
77 TIGR00972 3a0107s01c2 phosphat 100.0 3.4E-35 7.3E-40 291.8 24.9 187 171-396 14-231 (247)
78 cd03260 ABC_PstB_phosphate_tra 100.0 1.5E-35 3.3E-40 290.4 21.9 187 171-394 13-226 (227)
79 cd03266 ABC_NatA_sodium_export 100.0 2.1E-35 4.5E-40 287.5 22.7 180 172-390 19-218 (218)
80 cd03256 ABC_PhnC_transporter A 100.0 2.6E-35 5.5E-40 291.0 23.5 195 171-396 14-233 (241)
81 cd03269 ABC_putative_ATPase Th 100.0 2.4E-35 5.3E-40 285.6 22.9 181 171-390 13-210 (210)
82 COG3840 ThiQ ABC-type thiamine 100.0 4.9E-36 1.1E-40 277.0 16.9 181 176-396 17-218 (231)
83 PRK15079 oligopeptide ABC tran 100.0 4.3E-35 9.3E-40 303.2 25.9 190 170-396 33-250 (331)
84 TIGR03415 ABC_choXWV_ATP choli 100.0 1.5E-35 3.3E-40 310.8 22.8 192 166-396 32-253 (382)
85 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 4.6E-35 1E-39 330.5 28.1 235 84-397 418-673 (686)
86 PRK11831 putative ABC transpor 100.0 3.9E-35 8.5E-40 295.3 24.3 188 171-396 20-232 (269)
87 cd03268 ABC_BcrA_bacitracin_re 100.0 2.7E-35 5.9E-40 284.9 22.2 177 171-390 13-208 (208)
88 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 5.4E-35 1.2E-39 288.4 24.7 187 171-397 14-221 (236)
89 PRK13631 cbiO cobalt transport 100.0 6.5E-35 1.4E-39 300.6 26.3 204 171-413 39-284 (320)
90 cd03264 ABC_drug_resistance_li 100.0 3.1E-35 6.7E-40 285.1 22.4 180 171-390 13-211 (211)
91 PRK13641 cbiO cobalt transport 100.0 7.1E-35 1.5E-39 296.1 25.9 187 171-396 20-233 (287)
92 PRK14268 phosphate ABC transpo 100.0 7.7E-35 1.7E-39 291.3 25.4 185 171-395 25-240 (258)
93 PRK14273 phosphate ABC transpo 100.0 6.5E-35 1.4E-39 291.0 24.7 187 171-396 20-237 (254)
94 PRK13636 cbiO cobalt transport 100.0 7.4E-35 1.6E-39 295.5 25.3 199 171-408 19-245 (283)
95 TIGR02315 ABC_phnC phosphonate 100.0 2.8E-35 6.1E-40 291.2 21.7 194 171-395 15-233 (243)
96 PRK09473 oppD oligopeptide tra 100.0 9.1E-35 2E-39 300.7 26.1 205 171-418 29-264 (330)
97 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 3E-35 6.6E-40 286.4 21.2 176 171-386 17-218 (218)
98 COG0444 DppD ABC-type dipeptid 100.0 7.4E-35 1.6E-39 292.4 24.0 208 170-421 17-259 (316)
99 PRK11247 ssuB aliphatic sulfon 100.0 5.4E-35 1.2E-39 292.6 22.9 178 171-393 25-219 (257)
100 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 8.2E-35 1.8E-39 329.6 27.1 245 84-397 436-700 (710)
101 PRK13635 cbiO cobalt transport 100.0 9.9E-35 2.1E-39 294.0 24.7 198 171-408 20-243 (279)
102 PRK13652 cbiO cobalt transport 100.0 1.3E-34 2.9E-39 292.7 25.6 186 172-396 18-226 (277)
103 PRK11308 dppF dipeptide transp 100.0 1.4E-34 3.1E-39 298.9 26.4 201 171-418 28-257 (327)
104 PRK11248 tauB taurine transpor 100.0 8.7E-35 1.9E-39 290.7 23.9 184 171-393 14-216 (255)
105 TIGR03005 ectoine_ehuA ectoine 100.0 1.1E-34 2.4E-39 289.0 24.5 187 171-396 13-235 (252)
106 PRK11022 dppD dipeptide transp 100.0 1.4E-34 3.1E-39 298.9 26.2 205 171-418 20-256 (326)
107 PRK10895 lipopolysaccharide AB 100.0 7.9E-35 1.7E-39 288.0 23.2 188 171-396 16-225 (241)
108 cd03267 ABC_NatA_like Similar 100.0 6.7E-35 1.5E-39 288.1 22.5 185 167-390 30-236 (236)
109 PRK11614 livF leucine/isoleuci 100.0 7E-35 1.5E-39 287.7 22.5 185 171-396 18-225 (237)
110 PRK13639 cbiO cobalt transport 100.0 1.8E-34 3.8E-39 291.5 25.9 198 171-407 15-239 (275)
111 PRK11124 artP arginine transpo 100.0 1.3E-34 2.9E-39 286.6 24.6 186 171-395 15-228 (242)
112 PRK13644 cbiO cobalt transport 100.0 1.3E-34 2.8E-39 292.4 24.9 186 171-396 15-223 (274)
113 TIGR03411 urea_trans_UrtD urea 100.0 1.3E-34 2.7E-39 286.6 24.3 195 171-396 15-230 (242)
114 PRK14247 phosphate ABC transpo 100.0 1.5E-34 3.2E-39 287.6 24.8 189 171-396 16-233 (250)
115 KOG0055 Multidrug/pheromone ex 100.0 2.6E-35 5.7E-40 335.0 22.0 240 84-397 314-576 (1228)
116 PRK11629 lolD lipoprotein tran 100.0 1.5E-34 3.3E-39 284.7 24.5 182 171-392 22-229 (233)
117 PRK13638 cbiO cobalt transport 100.0 1.4E-34 3.1E-39 291.5 24.7 187 171-396 14-224 (271)
118 PRK10619 histidine/lysine/argi 100.0 1.8E-34 3.9E-39 288.4 25.1 187 171-396 18-240 (257)
119 TIGR03410 urea_trans_UrtE urea 100.0 9.6E-35 2.1E-39 285.3 22.4 183 171-395 13-219 (230)
120 cd03226 ABC_cobalt_CbiO_domain 100.0 4.9E-35 1.1E-39 282.6 19.9 174 171-387 13-205 (205)
121 TIGR01193 bacteriocin_ABC ABC- 100.0 1.1E-34 2.4E-39 328.4 26.1 241 84-397 438-697 (708)
122 PRK13548 hmuV hemin importer A 100.0 1.5E-34 3.3E-39 289.3 24.0 187 171-396 15-229 (258)
123 PRK11300 livG leucine/isoleuci 100.0 1.5E-34 3.3E-39 288.2 23.6 202 171-396 18-242 (255)
124 TIGR03375 type_I_sec_LssB type 100.0 2.1E-34 4.6E-39 325.5 27.5 238 84-397 428-688 (694)
125 PRK14242 phosphate transporter 100.0 2.7E-34 5.9E-39 286.2 25.1 189 172-395 20-235 (253)
126 COG4988 CydD ABC-type transpor 100.0 6.4E-35 1.4E-39 310.9 21.6 246 77-396 272-542 (559)
127 PRK13649 cbiO cobalt transport 100.0 3E-34 6.4E-39 290.4 25.5 187 171-396 20-233 (280)
128 cd03292 ABC_FtsE_transporter F 100.0 1.2E-34 2.6E-39 281.2 21.8 177 171-386 14-214 (214)
129 TIGR03740 galliderm_ABC gallid 100.0 1.9E-34 4E-39 282.1 23.0 180 171-393 13-209 (223)
130 PRK13640 cbiO cobalt transport 100.0 2.2E-34 4.8E-39 291.9 24.2 196 172-407 21-245 (282)
131 TIGR02673 FtsE cell division A 100.0 1.4E-34 3E-39 281.0 21.8 176 171-385 15-214 (214)
132 PRK14250 phosphate ABC transpo 100.0 2.8E-34 6.1E-39 284.4 24.3 182 171-396 16-220 (241)
133 PRK11231 fecE iron-dicitrate t 100.0 2E-34 4.3E-39 287.8 23.4 189 171-395 15-225 (255)
134 PRK13632 cbiO cobalt transport 100.0 3.1E-34 6.7E-39 289.1 24.9 186 171-396 22-230 (271)
135 PRK14256 phosphate ABC transpo 100.0 3.6E-34 7.9E-39 285.2 25.1 191 171-395 17-234 (252)
136 PRK13633 cobalt transporter AT 100.0 3.4E-34 7.4E-39 290.1 24.9 198 171-408 23-247 (280)
137 TIGR00958 3a01208 Conjugate Tr 100.0 2.5E-34 5.3E-39 325.5 26.6 237 84-397 444-702 (711)
138 PRK14267 phosphate ABC transpo 100.0 3.6E-34 7.9E-39 285.3 24.6 189 171-396 17-236 (253)
139 PRK14237 phosphate transporter 100.0 6E-34 1.3E-38 286.4 26.4 191 171-396 33-250 (267)
140 PRK14245 phosphate ABC transpo 100.0 6.2E-34 1.3E-38 283.2 26.2 191 171-396 16-233 (250)
141 cd03300 ABC_PotA_N PotA is an 100.0 2.6E-34 5.6E-39 283.0 23.2 187 171-396 13-219 (232)
142 cd03257 ABC_NikE_OppD_transpor 100.0 2.6E-34 5.6E-39 281.3 22.9 182 172-390 19-228 (228)
143 PRK11144 modC molybdate transp 100.0 1E-34 2.3E-39 302.9 21.3 189 176-417 16-230 (352)
144 PRK10575 iron-hydroxamate tran 100.0 2.4E-34 5.1E-39 289.0 23.0 190 171-395 24-235 (265)
145 TIGR02211 LolD_lipo_ex lipopro 100.0 3.4E-34 7.4E-39 279.6 23.3 177 171-387 18-220 (221)
146 PRK10744 pstB phosphate transp 100.0 5E-34 1.1E-38 285.7 25.1 185 172-396 27-243 (260)
147 TIGR01978 sufC FeS assembly AT 100.0 3E-34 6.4E-39 283.8 23.1 195 171-396 13-233 (243)
148 PRK14239 phosphate transporter 100.0 5.1E-34 1.1E-38 283.9 24.7 191 171-396 18-235 (252)
149 PRK10908 cell division protein 100.0 3.8E-34 8.1E-39 279.8 23.2 179 171-388 15-217 (222)
150 PRK13648 cbiO cobalt transport 100.0 5.7E-34 1.2E-38 286.8 25.1 196 172-407 23-244 (269)
151 PRK14241 phosphate transporter 100.0 5.4E-34 1.2E-38 285.1 24.8 188 171-396 17-241 (258)
152 PRK11176 lipid transporter ATP 100.0 4.4E-34 9.6E-39 316.7 26.5 239 84-397 308-567 (582)
153 PRK15093 antimicrobial peptide 100.0 5.8E-34 1.2E-38 294.9 25.6 196 170-396 19-247 (330)
154 PRK14270 phosphate ABC transpo 100.0 7E-34 1.5E-38 283.0 25.1 187 171-396 17-234 (251)
155 TIGR03873 F420-0_ABC_ATP propo 100.0 4E-34 8.6E-39 285.7 23.4 189 171-395 14-224 (256)
156 PRK14235 phosphate transporter 100.0 7.4E-34 1.6E-38 285.7 25.5 192 171-396 32-250 (267)
157 PRK13645 cbiO cobalt transport 100.0 8E-34 1.7E-38 288.6 25.9 186 172-396 25-239 (289)
158 PRK10790 putative multidrug tr 100.0 4.7E-34 1E-38 317.1 26.3 235 84-397 308-563 (592)
159 PRK14257 phosphate ABC transpo 100.0 7.3E-34 1.6E-38 293.8 25.8 203 171-416 95-324 (329)
160 PRK09984 phosphonate/organopho 100.0 3.3E-34 7.2E-39 287.2 22.6 194 171-395 17-240 (262)
161 PRK10253 iron-enterobactin tra 100.0 4E-34 8.6E-39 287.3 23.1 190 171-396 20-232 (265)
162 COG4559 ABC-type hemin transpo 100.0 1.4E-34 3.1E-39 273.2 18.4 188 170-396 13-229 (259)
163 PRK14249 phosphate ABC transpo 100.0 9E-34 1.9E-38 282.2 25.1 204 171-417 17-247 (251)
164 PRK14274 phosphate ABC transpo 100.0 9.3E-34 2E-38 283.5 24.9 191 171-396 25-242 (259)
165 PRK14269 phosphate ABC transpo 100.0 1E-33 2.2E-38 281.1 24.8 192 171-396 15-229 (246)
166 cd03262 ABC_HisP_GlnQ_permease 100.0 3.6E-34 7.8E-39 277.7 21.0 177 171-386 13-213 (213)
167 PRK11160 cysteine/glutathione 100.0 6.6E-34 1.4E-38 314.9 25.9 232 84-397 304-562 (574)
168 TIGR02769 nickel_nikE nickel i 100.0 7.5E-34 1.6E-38 285.3 23.9 188 170-396 23-239 (265)
169 KOG0055 Multidrug/pheromone ex 100.0 3.2E-34 7E-39 326.1 23.8 240 84-397 951-1213(1228)
170 PRK14272 phosphate ABC transpo 100.0 1.1E-33 2.4E-38 281.5 24.8 188 171-396 17-235 (252)
171 cd03225 ABC_cobalt_CbiO_domain 100.0 2.7E-34 5.8E-39 278.4 19.8 176 171-385 14-211 (211)
172 cd03298 ABC_ThiQ_thiamine_tran 100.0 4E-34 8.8E-39 277.3 20.9 176 176-390 16-211 (211)
173 KOG0057 Mitochondrial Fe/S clu 100.0 8.4E-34 1.8E-38 298.6 24.8 211 117-397 344-574 (591)
174 PRK14240 phosphate transporter 100.0 1.2E-33 2.6E-38 281.1 24.7 190 172-396 17-233 (250)
175 PRK13642 cbiO cobalt transport 100.0 1.4E-33 3E-38 285.3 25.5 198 171-408 20-243 (277)
176 PRK14253 phosphate ABC transpo 100.0 1.3E-33 2.9E-38 280.6 24.8 190 171-395 16-231 (249)
177 PRK14259 phosphate ABC transpo 100.0 1.2E-33 2.6E-38 284.5 24.7 189 171-396 26-252 (269)
178 PRK11701 phnK phosphonate C-P 100.0 2.1E-33 4.5E-38 280.9 25.7 188 171-396 19-240 (258)
179 cd03299 ABC_ModC_like Archeal 100.0 1.2E-33 2.5E-38 279.0 23.6 185 173-396 14-218 (235)
180 PRK14248 phosphate ABC transpo 100.0 1.7E-33 3.6E-38 283.2 25.0 187 171-396 34-251 (268)
181 PRK14251 phosphate ABC transpo 100.0 1.6E-33 3.4E-38 280.4 24.6 187 171-396 17-234 (251)
182 COG1123 ATPase components of v 100.0 1E-33 2.2E-38 302.7 24.8 203 171-418 22-257 (539)
183 cd03234 ABCG_White The White s 100.0 8.5E-34 1.8E-38 278.1 22.2 184 171-390 20-226 (226)
184 PRK10771 thiQ thiamine transpo 100.0 1.2E-33 2.7E-38 278.0 23.2 182 176-396 17-218 (232)
185 PRK15112 antimicrobial peptide 100.0 1.6E-33 3.4E-38 283.3 24.3 187 171-396 26-238 (267)
186 PRK10584 putative ABC transpor 100.0 1.6E-33 3.4E-38 276.4 23.7 178 172-389 24-227 (228)
187 cd03235 ABC_Metallic_Cations A 100.0 4.2E-34 9E-39 277.6 19.3 184 171-390 12-213 (213)
188 TIGR02142 modC_ABC molybdenum 100.0 5.4E-34 1.2E-38 297.9 21.6 180 176-396 15-220 (354)
189 TIGR00968 3a0106s01 sulfate AB 100.0 1.4E-33 3.1E-38 278.7 23.4 187 171-396 13-219 (237)
190 TIGR01184 ntrCD nitrate transp 100.0 4.7E-34 1E-38 281.0 19.8 185 174-395 1-202 (230)
191 COG4598 HisP ABC-type histidin 100.0 1.7E-34 3.7E-39 266.2 15.0 206 164-417 12-253 (256)
192 PRK14255 phosphate ABC transpo 100.0 3.1E-33 6.6E-38 278.5 25.4 187 171-396 18-235 (252)
193 cd03233 ABC_PDR_domain1 The pl 100.0 1E-33 2.2E-38 273.4 21.2 160 169-390 18-202 (202)
194 PRK14262 phosphate ABC transpo 100.0 3E-33 6.6E-38 278.2 25.0 191 171-396 16-233 (250)
195 PRK14271 phosphate ABC transpo 100.0 3.2E-33 6.8E-38 282.6 25.5 205 171-418 34-264 (276)
196 COG4525 TauB ABC-type taurine 100.0 6.7E-34 1.5E-38 265.5 18.8 183 171-393 18-220 (259)
197 PRK14265 phosphate ABC transpo 100.0 2.6E-33 5.7E-38 282.8 24.8 185 171-396 33-257 (274)
198 PRK14260 phosphate ABC transpo 100.0 3.2E-33 7E-38 279.7 25.1 187 171-396 20-242 (259)
199 PTZ00265 multidrug resistance 100.0 9.9E-34 2.2E-38 339.3 25.4 239 84-396 1126-1451(1466)
200 PRK14246 phosphate ABC transpo 100.0 2.1E-33 4.6E-38 281.0 23.4 190 169-396 21-240 (257)
201 PRK13547 hmuV hemin importer A 100.0 1.6E-33 3.5E-38 284.1 22.8 191 171-396 14-243 (272)
202 TIGR01842 type_I_sec_PrtD type 100.0 4E-33 8.8E-38 306.8 27.8 237 84-396 284-541 (544)
203 TIGR02770 nickel_nikD nickel i 100.0 1.6E-33 3.4E-38 277.1 21.9 185 173-396 1-214 (230)
204 PRK15439 autoinducer 2 ABC tra 100.0 1.2E-33 2.6E-38 308.6 23.4 183 171-396 24-228 (510)
205 PRK14236 phosphate transporter 100.0 4.6E-33 9.9E-38 280.7 25.8 191 171-396 38-255 (272)
206 PRK14258 phosphate ABC transpo 100.0 4E-33 8.6E-38 279.5 25.2 190 172-396 21-244 (261)
207 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1.4E-33 3.1E-38 276.5 21.3 186 165-390 29-224 (224)
208 PRK14275 phosphate ABC transpo 100.0 5.1E-33 1.1E-37 282.5 25.7 187 171-396 52-269 (286)
209 TIGR01277 thiQ thiamine ABC tr 100.0 1.9E-33 4.2E-38 273.2 21.6 180 173-391 13-212 (213)
210 COG1123 ATPase components of v 100.0 1.2E-33 2.5E-38 302.3 21.9 204 170-419 303-533 (539)
211 KOG0056 Heavy metal exporter H 100.0 5.8E-34 1.3E-38 294.5 18.7 237 84-397 502-761 (790)
212 PRK14244 phosphate ABC transpo 100.0 6.2E-33 1.4E-37 276.2 25.4 192 171-396 18-236 (251)
213 PRK10762 D-ribose transporter 100.0 1.1E-33 2.3E-38 308.5 21.4 190 171-395 17-228 (501)
214 PRK14261 phosphate ABC transpo 100.0 4.8E-33 1E-37 277.3 24.3 191 171-396 19-236 (253)
215 COG4987 CydC ABC-type transpor 100.0 1E-33 2.2E-38 297.8 20.2 231 84-397 303-561 (573)
216 TIGR02203 MsbA_lipidA lipid A 100.0 5.2E-33 1.1E-37 307.2 26.9 238 84-396 297-555 (571)
217 COG4152 ABC-type uncharacteriz 100.0 6.4E-34 1.4E-38 273.8 16.9 197 164-399 8-221 (300)
218 PRK13549 xylose transporter AT 100.0 1.6E-33 3.4E-38 307.5 22.3 189 171-395 18-230 (506)
219 PRK14238 phosphate transporter 100.0 6.6E-33 1.4E-37 279.5 25.0 186 171-395 37-253 (271)
220 PRK15177 Vi polysaccharide exp 100.0 2.9E-33 6.2E-38 272.5 21.6 187 172-400 1-195 (213)
221 COG4618 ArpD ABC-type protease 100.0 3.8E-33 8.2E-38 291.2 23.7 239 84-399 302-562 (580)
222 PRK10261 glutathione transport 100.0 5.4E-33 1.2E-37 310.1 26.5 188 171-396 337-552 (623)
223 TIGR01846 type_I_sec_HlyB type 100.0 6.4E-33 1.4E-37 313.5 27.3 238 84-397 421-680 (694)
224 PRK13546 teichoic acids export 100.0 1.4E-32 3E-37 276.2 26.7 190 169-397 35-232 (264)
225 PRK13657 cyclic beta-1,2-gluca 100.0 7.4E-33 1.6E-37 307.4 27.3 189 172-397 349-558 (588)
226 cd03252 ABCC_Hemolysin The ABC 100.0 7.9E-33 1.7E-37 272.9 23.8 188 171-396 15-224 (237)
227 TIGR02323 CP_lyasePhnK phospho 100.0 1.1E-32 2.4E-37 274.7 25.0 187 171-396 16-237 (253)
228 PRK10261 glutathione transport 100.0 3.8E-33 8.2E-38 311.3 24.1 187 171-396 29-257 (623)
229 PRK14243 phosphate transporter 100.0 8.9E-33 1.9E-37 277.4 24.2 189 171-396 23-247 (264)
230 cd03297 ABC_ModC_molybdenum_tr 100.0 3.4E-33 7.4E-38 271.5 20.3 178 169-390 11-214 (214)
231 PRK14254 phosphate ABC transpo 100.0 1.3E-32 2.8E-37 279.4 25.3 185 171-396 52-268 (285)
232 PRK10418 nikD nickel transport 100.0 1.3E-32 2.8E-37 274.7 24.8 184 172-396 17-229 (254)
233 PRK14263 phosphate ABC transpo 100.0 4.7E-33 1E-37 279.1 21.7 192 168-396 18-244 (261)
234 PRK09700 D-allose transporter 100.0 3.4E-33 7.3E-38 305.2 22.2 193 171-395 18-232 (510)
235 TIGR03269 met_CoM_red_A2 methy 100.0 6.6E-33 1.4E-37 303.5 24.5 190 171-399 13-260 (520)
236 PRK10789 putative multidrug tr 100.0 1.2E-32 2.6E-37 304.6 26.8 236 84-397 280-538 (569)
237 TIGR01192 chvA glucan exporter 100.0 1.3E-32 2.8E-37 305.2 26.9 240 84-397 299-558 (585)
238 PRK14266 phosphate ABC transpo 100.0 1.7E-32 3.7E-37 272.8 24.8 191 171-396 16-233 (250)
239 PRK13545 tagH teichoic acids e 100.0 8.1E-33 1.8E-37 296.8 24.0 188 171-398 37-233 (549)
240 CHL00131 ycf16 sulfate ABC tra 100.0 1.5E-32 3.3E-37 273.3 24.2 194 171-395 20-239 (252)
241 COG4161 ArtP ABC-type arginine 100.0 6.1E-33 1.3E-37 252.0 19.2 202 168-416 12-240 (242)
242 cd03289 ABCC_CFTR2 The CFTR su 100.0 6.5E-33 1.4E-37 280.0 21.7 182 172-397 18-225 (275)
243 PRK14252 phosphate ABC transpo 100.0 2.2E-32 4.8E-37 274.6 24.8 190 172-396 30-248 (265)
244 PRK09544 znuC high-affinity zi 100.0 9.5E-33 2.1E-37 275.4 21.8 179 171-396 17-208 (251)
245 cd03251 ABCC_MsbA MsbA is an e 100.0 2E-32 4.4E-37 269.4 23.8 188 172-397 16-225 (234)
246 PRK03695 vitamin B12-transport 100.0 1E-32 2.2E-37 274.6 20.7 183 173-395 11-220 (248)
247 cd03254 ABCC_Glucan_exporter_l 100.0 3E-32 6.6E-37 267.2 23.9 188 172-397 17-226 (229)
248 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 2.6E-32 5.6E-37 269.4 23.2 189 171-397 16-226 (238)
249 cd03245 ABCC_bacteriocin_expor 100.0 1.1E-32 2.4E-37 268.8 20.3 178 171-390 17-220 (220)
250 PRK10247 putative ABC transpor 100.0 1.2E-32 2.6E-37 270.1 20.5 180 171-393 20-223 (225)
251 PRK10419 nikE nickel transport 100.0 2.5E-32 5.4E-37 274.9 23.2 187 171-396 25-240 (268)
252 PRK10982 galactose/methyl gala 100.0 8.4E-33 1.8E-37 300.7 20.7 189 170-395 10-221 (491)
253 TIGR02982 heterocyst_DevA ABC 100.0 3.9E-32 8.4E-37 265.3 22.8 177 171-386 18-219 (220)
254 TIGR02633 xylG D-xylose ABC tr 100.0 1.8E-32 3.9E-37 298.7 22.6 190 171-395 14-228 (500)
255 PRK09580 sufC cysteine desulfu 100.0 7E-32 1.5E-36 267.8 24.5 200 171-403 14-240 (248)
256 TIGR02204 MsbA_rel ABC transpo 100.0 5.6E-32 1.2E-36 299.4 26.5 241 84-396 301-562 (576)
257 PRK11819 putative ABC transpor 100.0 7E-32 1.5E-36 297.7 27.0 212 171-396 20-249 (556)
258 TIGR03608 L_ocin_972_ABC putat 100.0 1.7E-32 3.6E-37 264.6 19.3 172 170-381 10-206 (206)
259 PLN03130 ABC transporter C fam 100.0 4.8E-32 1E-36 327.5 27.8 240 84-397 1199-1461(1622)
260 TIGR01257 rim_protein retinal- 100.0 3E-32 6.5E-37 328.3 25.8 191 171-400 1952-2162(2272)
261 TIGR03269 met_CoM_red_A2 methy 100.0 5.4E-32 1.2E-36 296.3 25.4 187 171-397 297-517 (520)
262 PRK15056 manganese/iron transp 100.0 3.6E-32 7.8E-37 274.2 22.1 188 171-395 20-228 (272)
263 PRK14264 phosphate ABC transpo 100.0 7E-32 1.5E-36 276.5 24.5 203 171-396 58-288 (305)
264 PLN03232 ABC transporter C fam 100.0 4.5E-32 9.8E-37 327.0 26.8 241 84-397 1196-1458(1495)
265 COG4181 Predicted ABC-type tra 100.0 2E-32 4.2E-37 250.9 17.9 181 167-388 19-226 (228)
266 PRK15134 microcin C ABC transp 100.0 4.8E-32 1.1E-36 297.3 24.4 187 171-396 22-245 (529)
267 PRK10938 putative molybdenum t 100.0 2.1E-32 4.6E-37 297.4 21.4 206 171-396 16-223 (490)
268 COG1129 MglA ABC-type sugar tr 100.0 1.6E-32 3.4E-37 291.8 19.5 194 164-392 14-229 (500)
269 PRK15134 microcin C ABC transp 100.0 3.2E-32 7E-37 298.7 22.2 189 171-396 299-514 (529)
270 PRK11288 araG L-arabinose tran 100.0 4.9E-32 1.1E-36 295.4 23.4 185 171-391 17-223 (501)
271 cd03253 ABCC_ATM1_transporter 100.0 1.2E-31 2.6E-36 264.2 23.8 190 171-396 14-223 (236)
272 TIGR01257 rim_protein retinal- 100.0 6E-32 1.3E-36 325.7 26.0 191 170-399 942-1151(2272)
273 PRK13538 cytochrome c biogenes 100.0 8.3E-32 1.8E-36 260.1 21.0 169 171-381 14-202 (204)
274 cd03244 ABCC_MRP_domain2 Domai 100.0 5.2E-32 1.1E-36 264.2 19.8 177 171-391 17-220 (221)
275 PRK15064 ABC transporter ATP-b 100.0 1.2E-31 2.7E-36 294.2 23.9 212 171-397 14-242 (530)
276 COG4604 CeuD ABC-type enteroch 100.0 9.5E-33 2.1E-37 258.2 12.7 195 164-396 7-224 (252)
277 cd03232 ABC_PDR_domain2 The pl 100.0 1.9E-31 4.1E-36 255.5 21.9 152 171-390 20-192 (192)
278 COG4148 ModC ABC-type molybdat 100.0 7.4E-33 1.6E-37 270.8 12.3 175 176-396 16-217 (352)
279 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3E-31 6.5E-36 292.4 26.6 213 171-397 18-248 (552)
280 cd03288 ABCC_SUR2 The SUR doma 100.0 1.5E-31 3.2E-36 267.5 21.8 188 171-397 34-243 (257)
281 PRK13549 xylose transporter AT 100.0 6.3E-32 1.4E-36 294.9 20.6 192 170-395 274-492 (506)
282 TIGR02324 CP_lyasePhnL phospho 100.0 2.5E-31 5.3E-36 260.1 22.6 173 171-382 21-223 (224)
283 TIGR00957 MRP_assoc_pro multi 100.0 2.1E-31 4.6E-36 321.7 27.2 240 84-397 1246-1508(1522)
284 cd03291 ABCC_CFTR1 The CFTR su 100.0 5.2E-31 1.1E-35 267.0 25.2 188 172-396 51-246 (282)
285 PRK15064 ABC transporter ATP-b 100.0 1.6E-31 3.4E-36 293.4 23.0 183 169-396 330-524 (530)
286 cd03213 ABCG_EPDR ABCG transpo 100.0 2.3E-31 5E-36 255.3 21.3 152 171-390 22-194 (194)
287 PRK13543 cytochrome c biogenes 100.0 1.3E-31 2.8E-36 260.7 19.8 171 171-383 24-212 (214)
288 cd03231 ABC_CcmA_heme_exporter 100.0 1.5E-31 3.2E-36 257.9 19.9 166 171-381 13-198 (201)
289 TIGR02868 CydC thiol reductant 100.0 1.4E-31 3E-36 293.6 22.0 212 84-366 297-528 (529)
290 COG4674 Uncharacterized ABC-ty 100.0 6.5E-32 1.4E-36 252.2 15.7 197 169-396 16-234 (249)
291 cd03217 ABC_FeS_Assembly ABC-t 100.0 3.6E-31 7.7E-36 255.2 20.8 181 171-402 13-198 (200)
292 PTZ00243 ABC transporter; Prov 100.0 4.8E-31 1E-35 318.4 26.8 189 172-397 1324-1533(1560)
293 PRK09700 D-allose transporter 100.0 1.6E-31 3.4E-36 292.0 20.5 189 172-392 277-493 (510)
294 cd03248 ABCC_TAP TAP, the Tran 100.0 2.1E-31 4.7E-36 260.9 19.0 177 172-386 28-226 (226)
295 PTZ00265 multidrug resistance 100.0 5.4E-31 1.2E-35 315.8 26.4 260 84-384 348-655 (1466)
296 PRK13539 cytochrome c biogenes 100.0 6E-31 1.3E-35 254.8 21.0 168 171-383 15-200 (207)
297 TIGR01187 potA spermidine/putr 100.0 2.6E-31 5.6E-36 274.6 19.5 169 189-396 1-189 (325)
298 cd03237 ABC_RNaseL_inhibitor_d 100.0 7.3E-31 1.6E-35 261.1 21.9 180 173-395 9-205 (246)
299 PRK11819 putative ABC transpor 100.0 6.6E-31 1.4E-35 289.9 23.9 185 169-395 335-531 (556)
300 cd03369 ABCC_NFT1 Domain 2 of 100.0 6.2E-31 1.3E-35 254.4 20.8 166 172-392 22-207 (207)
301 cd03230 ABC_DR_subfamily_A Thi 100.0 4.5E-31 9.8E-36 248.7 19.2 158 172-386 14-173 (173)
302 TIGR02857 CydD thiol reductant 100.0 9.8E-31 2.1E-35 286.9 24.5 222 84-381 287-529 (529)
303 COG4172 ABC-type uncharacteriz 100.0 8.1E-31 1.8E-35 267.1 22.0 201 169-414 298-525 (534)
304 PLN03232 ABC transporter C fam 100.0 9.7E-31 2.1E-35 315.5 26.5 237 84-396 581-827 (1495)
305 PRK11288 araG L-arabinose tran 100.0 2.2E-31 4.7E-36 290.4 18.8 191 172-395 267-483 (501)
306 TIGR02633 xylG D-xylose ABC tr 100.0 2.3E-31 5E-36 290.0 19.1 190 170-393 272-488 (500)
307 TIGR01166 cbiO cobalt transpor 100.0 3E-31 6.5E-36 253.2 17.3 161 170-369 4-188 (190)
308 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.2E-30 2.5E-35 287.8 24.3 185 169-395 333-529 (552)
309 COG0396 sufC Cysteine desulfur 100.0 1.7E-30 3.7E-35 248.8 22.1 199 171-406 17-242 (251)
310 TIGR01189 ccmA heme ABC export 100.0 7.8E-31 1.7E-35 252.1 19.7 164 171-380 13-197 (198)
311 cd03250 ABCC_MRP_domain1 Domai 100.0 6.6E-31 1.4E-35 253.6 18.9 177 172-385 19-204 (204)
312 PRK10762 D-ribose transporter 100.0 4.3E-31 9.2E-36 288.0 19.6 191 172-395 266-482 (501)
313 cd03247 ABCC_cytochrome_bd The 100.0 1.2E-30 2.6E-35 246.7 20.1 161 172-390 16-178 (178)
314 cd03214 ABC_Iron-Siderophores_ 100.0 5.6E-31 1.2E-35 249.6 17.7 166 171-390 12-180 (180)
315 TIGR03771 anch_rpt_ABC anchore 100.0 7.8E-31 1.7E-35 257.0 19.1 181 179-396 1-200 (223)
316 COG1134 TagH ABC-type polysacc 100.0 3.3E-30 7.1E-35 249.6 22.9 196 167-402 36-241 (249)
317 cd03229 ABC_Class3 This class 100.0 8.9E-31 1.9E-35 247.8 18.5 163 171-385 13-178 (178)
318 TIGR01271 CFTR_protein cystic 100.0 2.2E-30 4.8E-35 312.1 26.2 244 84-396 1165-1439(1490)
319 COG4586 ABC-type uncharacteriz 100.0 4.7E-31 1E-35 257.6 16.4 208 168-400 34-249 (325)
320 PRK10636 putative ABC transpor 100.0 2E-30 4.3E-35 290.0 23.0 184 168-397 322-517 (638)
321 cd03223 ABCD_peroxisomal_ALDP 100.0 2.2E-30 4.8E-35 242.6 19.0 142 171-384 14-163 (166)
322 PRK15439 autoinducer 2 ABC tra 100.0 1.2E-30 2.6E-35 285.1 19.7 187 173-395 278-490 (510)
323 cd03215 ABC_Carb_Monos_II This 100.0 1.4E-30 3E-35 247.3 17.4 142 173-386 15-182 (182)
324 COG4608 AppF ABC-type oligopep 100.0 1.3E-30 2.9E-35 256.7 17.7 183 171-419 26-213 (268)
325 PLN03130 ABC transporter C fam 100.0 5.1E-30 1.1E-34 310.0 26.1 237 84-396 581-827 (1622)
326 PRK13540 cytochrome c biogenes 100.0 3.8E-30 8.2E-35 247.8 19.7 164 171-379 14-197 (200)
327 COG5265 ATM1 ABC-type transpor 100.0 2.6E-30 5.7E-35 264.8 19.4 235 86-397 228-486 (497)
328 PRK10636 putative ABC transpor 100.0 1.6E-29 3.5E-34 282.7 27.6 210 169-396 12-235 (638)
329 PRK11147 ABC transporter ATPas 100.0 4.5E-30 9.7E-35 287.4 23.1 186 169-396 330-527 (635)
330 COG1119 ModF ABC-type molybden 100.0 1.5E-30 3.3E-35 251.8 16.1 206 169-391 42-256 (257)
331 cd03246 ABCC_Protease_Secretio 100.0 3.7E-30 8E-35 242.4 18.4 157 171-386 15-173 (173)
332 COG3845 ABC-type uncharacteriz 100.0 2.3E-30 5E-35 270.6 17.8 191 165-391 11-223 (501)
333 cd03290 ABCC_SUR1_N The SUR do 100.0 5.2E-30 1.1E-34 249.9 18.2 171 171-385 14-218 (218)
334 PRK13409 putative ATPase RIL; 100.0 7.1E-30 1.5E-34 282.5 21.5 174 173-391 354-536 (590)
335 PRK11147 ABC transporter ATPas 100.0 3.7E-29 8.1E-34 280.0 27.5 213 171-396 16-242 (635)
336 PRK10535 macrolide transporter 100.0 1.9E-29 4.2E-34 282.7 24.3 186 171-396 21-231 (648)
337 COG0488 Uup ATPase components 100.0 1.7E-29 3.6E-34 274.2 22.3 213 169-396 14-239 (530)
338 PRK10522 multidrug transporter 100.0 2.1E-29 4.5E-34 277.6 23.4 235 84-389 289-530 (547)
339 PLN03073 ABC transporter F fam 100.0 3.6E-29 7.9E-34 281.9 24.9 185 170-398 521-715 (718)
340 PRK13541 cytochrome c biogenes 100.0 2.1E-29 4.5E-34 241.8 19.6 161 172-378 15-192 (195)
341 TIGR00954 3a01203 Peroxysomal 100.0 1.9E-29 4.1E-34 283.2 22.3 175 171-383 465-653 (659)
342 cd03228 ABCC_MRP_Like The MRP 100.0 1.5E-29 3.2E-34 237.9 18.2 155 172-385 16-171 (171)
343 PRK10938 putative molybdenum t 100.0 8.7E-30 1.9E-34 277.0 18.9 189 167-390 269-485 (490)
344 cd03216 ABC_Carb_Monos_I This 100.0 2.2E-29 4.8E-34 235.2 19.0 148 171-388 13-162 (163)
345 COG4172 ABC-type uncharacteriz 100.0 3.4E-29 7.3E-34 255.3 20.4 205 169-417 21-259 (534)
346 PRK10982 galactose/methyl gala 100.0 1.6E-29 3.4E-34 275.0 19.1 190 171-393 261-476 (491)
347 COG4619 ABC-type uncharacteriz 100.0 8.3E-30 1.8E-34 233.0 13.9 176 169-386 14-212 (223)
348 TIGR01194 cyc_pep_trnsptr cycl 100.0 1E-28 2.2E-33 272.6 23.7 248 84-389 294-551 (555)
349 TIGR00957 MRP_assoc_pro multi 100.0 1E-28 2.2E-33 298.4 25.9 238 84-396 600-849 (1522)
350 cd03236 ABC_RNaseL_inhibitor_d 100.0 2.7E-29 5.8E-34 251.1 16.5 196 172-390 15-220 (255)
351 TIGR01271 CFTR_protein cystic 100.0 2.1E-28 4.6E-33 295.0 24.9 189 171-396 439-635 (1490)
352 PLN03073 ABC transporter F fam 100.0 4.7E-28 1E-32 272.9 25.9 220 170-396 189-430 (718)
353 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.9E-28 4.1E-33 224.4 18.1 131 172-385 14-144 (144)
354 cd03238 ABC_UvrA The excision 100.0 4E-28 8.7E-33 229.5 16.2 154 170-385 7-165 (176)
355 KOG0059 Lipid exporter ABCA1 a 100.0 2.3E-28 5.1E-33 281.7 16.9 189 173-400 580-790 (885)
356 cd03222 ABC_RNaseL_inhibitor T 100.0 1.5E-27 3.1E-32 225.9 15.7 146 169-395 11-161 (177)
357 PTZ00243 ABC transporter; Prov 100.0 2E-27 4.4E-32 287.0 21.0 190 170-396 672-869 (1560)
358 KOG0054 Multidrug resistance-a 100.0 5.8E-27 1.3E-31 272.5 23.7 239 84-396 483-730 (1381)
359 COG1101 PhnK ABC-type uncharac 100.0 1.8E-27 3.8E-32 225.7 15.5 188 169-390 17-231 (263)
360 PRK13409 putative ATPase RIL; 100.0 1.5E-27 3.2E-32 264.1 17.4 192 171-384 87-287 (590)
361 cd03270 ABC_UvrA_I The excisio 99.9 5.7E-27 1.2E-31 230.3 19.4 97 288-390 119-226 (226)
362 COG4133 CcmA ABC-type transpor 99.9 2.7E-27 5.8E-32 220.5 15.5 160 168-369 12-192 (209)
363 COG4107 PhnK ABC-type phosphon 99.9 6.1E-27 1.3E-31 215.3 17.2 220 165-396 13-240 (258)
364 COG4167 SapF ABC-type antimicr 99.9 6.4E-27 1.4E-31 216.7 16.9 210 169-396 24-238 (267)
365 KOG0054 Multidrug resistance-a 99.9 4.2E-26 9.1E-31 265.4 20.9 242 84-397 1100-1362(1381)
366 COG4136 ABC-type uncharacteriz 99.9 1.3E-26 2.9E-31 208.5 12.0 162 169-371 13-198 (213)
367 COG0488 Uup ATPase components 99.9 1.8E-25 4E-30 242.7 21.0 188 163-397 327-525 (530)
368 PF00005 ABC_tran: ABC transpo 99.9 3.2E-26 6.9E-31 206.3 11.6 118 174-339 1-137 (137)
369 cd00267 ABC_ATPase ABC (ATP-bi 99.9 1.7E-25 3.6E-30 207.2 14.4 143 172-385 13-157 (157)
370 cd03271 ABC_UvrA_II The excisi 99.9 3.3E-25 7.1E-30 221.8 17.5 209 171-392 8-261 (261)
371 KOG0927 Predicted transporter 99.9 1.9E-23 4E-28 220.1 20.2 213 170-396 87-308 (614)
372 COG4778 PhnL ABC-type phosphon 99.9 1.7E-23 3.7E-28 192.0 12.7 197 170-383 23-227 (235)
373 cd03278 ABC_SMC_barmotin Barmo 99.9 3.7E-23 8E-28 199.2 13.2 164 175-383 14-190 (197)
374 cd03274 ABC_SMC4_euk Eukaryoti 99.9 1.3E-23 2.9E-28 204.5 5.3 180 168-383 14-204 (212)
375 cd03272 ABC_SMC3_euk Eukaryoti 99.9 7.9E-22 1.7E-26 195.2 14.8 75 307-382 155-234 (243)
376 COG4178 ABC-type uncharacteriz 99.9 1E-21 2.2E-26 213.2 16.8 171 172-382 407-587 (604)
377 cd03279 ABC_sbcCD SbcCD and ot 99.9 1.2E-21 2.6E-26 190.8 15.2 79 307-385 120-210 (213)
378 PRK00349 uvrA excinuclease ABC 99.9 5.1E-21 1.1E-25 219.7 21.1 117 287-418 811-939 (943)
379 PRK00635 excinuclease ABC subu 99.9 7.9E-21 1.7E-25 226.9 21.4 107 283-396 787-905 (1809)
380 cd03273 ABC_SMC2_euk Eukaryoti 99.9 7.5E-22 1.6E-26 196.8 10.4 75 307-382 163-242 (251)
381 COG4138 BtuD ABC-type cobalami 99.9 2.6E-22 5.7E-27 185.0 6.3 179 174-396 15-220 (248)
382 COG1129 MglA ABC-type sugar tr 99.9 1E-20 2.2E-25 201.8 18.7 185 173-393 274-486 (500)
383 KOG0927 Predicted transporter 99.9 2.1E-21 4.6E-26 204.6 12.5 200 162-395 394-594 (614)
384 TIGR00630 uvra excinuclease AB 99.9 1.5E-20 3.3E-25 215.5 19.5 104 286-395 808-923 (924)
385 KOG0062 ATPase component of AB 99.8 2.4E-21 5.2E-26 203.2 11.0 188 169-396 91-284 (582)
386 cd03240 ABC_Rad50 The catalyti 99.8 9.2E-21 2E-25 183.5 13.0 76 307-383 112-197 (204)
387 COG4170 SapD ABC-type antimicr 99.8 1.9E-19 4E-24 170.4 14.6 235 168-419 17-262 (330)
388 COG1245 Predicted ATPase, RNas 99.8 1.7E-19 3.7E-24 186.9 14.7 161 178-382 361-530 (591)
389 COG4615 PvdE ABC-type sideroph 99.8 5.3E-19 1.1E-23 180.5 17.1 189 173-391 338-531 (546)
390 cd03276 ABC_SMC6_euk Eukaryoti 99.8 3.4E-20 7.4E-25 178.7 7.9 173 173-385 11-192 (198)
391 KOG0066 eIF2-interacting prote 99.8 3.9E-19 8.5E-24 182.8 12.6 180 158-383 587-776 (807)
392 KOG0060 Long-chain acyl-CoA tr 99.8 2.1E-18 4.6E-23 183.3 17.2 178 170-383 447-641 (659)
393 cd03280 ABC_MutS2 MutS2 homolo 99.8 4.4E-19 9.6E-24 171.0 10.0 80 309-390 90-172 (200)
394 COG3845 ABC-type uncharacteriz 99.8 3.3E-18 7.1E-23 179.8 14.9 193 171-395 271-490 (501)
395 cd03275 ABC_SMC1_euk Eukaryoti 99.8 7E-19 1.5E-23 175.1 9.4 74 309-383 154-233 (247)
396 KOG0062 ATPase component of AB 99.7 6.2E-18 1.3E-22 177.7 12.0 178 172-392 378-564 (582)
397 KOG2355 Predicted ABC-type tra 99.7 3.1E-17 6.6E-22 155.1 14.8 204 172-398 28-238 (291)
398 COG1245 Predicted ATPase, RNas 99.7 2.6E-17 5.7E-22 170.8 14.9 179 180-383 96-288 (591)
399 KOG0064 Peroxisomal long-chain 99.7 1.2E-17 2.6E-22 175.5 10.2 162 171-367 495-668 (728)
400 KOG0066 eIF2-interacting prote 99.7 3.5E-17 7.5E-22 168.6 10.7 212 171-395 277-497 (807)
401 cd03285 ABC_MSH2_euk MutS2 hom 99.7 2.9E-17 6.3E-22 161.1 9.4 152 170-391 16-175 (222)
402 cd03277 ABC_SMC5_euk Eukaryoti 99.7 5E-17 1.1E-21 158.5 10.7 79 307-385 123-211 (213)
403 COG0178 UvrA Excinuclease ATPa 99.7 3.8E-16 8.2E-21 171.6 16.6 117 289-419 805-932 (935)
404 COG2401 ABC-type ATPase fused 99.7 1.3E-15 2.7E-20 156.8 17.0 246 84-387 321-588 (593)
405 cd03239 ABC_SMC_head The struc 99.6 5.5E-16 1.2E-20 147.0 10.0 72 311-383 95-172 (178)
406 PRK00635 excinuclease ABC subu 99.6 4E-15 8.7E-20 178.5 18.9 106 287-397 1680-1796(1809)
407 cd03227 ABC_Class2 ABC-type Cl 99.6 4.3E-15 9.3E-20 138.6 12.5 73 310-383 77-155 (162)
408 cd03241 ABC_RecN RecN ATPase i 99.6 5.4E-15 1.2E-19 149.6 13.8 75 310-385 170-249 (276)
409 cd03283 ABC_MutS-like MutS-lik 99.6 7.4E-15 1.6E-19 141.8 12.3 139 171-382 14-164 (199)
410 cd03243 ABC_MutS_homologs The 99.6 6E-15 1.3E-19 142.4 9.9 84 309-395 90-177 (202)
411 cd03242 ABC_RecF RecF is a rec 99.6 4.3E-14 9.4E-19 142.6 16.1 77 308-386 181-269 (270)
412 cd03282 ABC_MSH4_euk MutS4 hom 99.5 4.2E-14 9.1E-19 137.0 11.9 139 170-375 15-158 (204)
413 PRK00349 uvrA excinuclease ABC 99.5 7.1E-14 1.5E-18 161.2 15.7 106 284-396 468-584 (943)
414 TIGR00630 uvra excinuclease AB 99.5 1.5E-13 3.2E-18 158.3 16.1 102 289-396 470-582 (924)
415 KOG0063 RNAse L inhibitor, ABC 99.5 1.7E-13 3.8E-18 141.5 13.3 172 167-382 345-531 (592)
416 cd03284 ABC_MutS1 MutS1 homolo 99.5 1.7E-13 3.7E-18 134.0 12.1 144 171-395 18-179 (216)
417 smart00534 MUTSac ATPase domai 99.3 7.6E-13 1.6E-17 126.2 3.0 78 309-388 60-141 (185)
418 PRK00064 recF recombination pr 99.3 3.1E-10 6.8E-15 119.3 21.4 79 307-386 270-359 (361)
419 TIGR02858 spore_III_AA stage I 99.2 1.4E-10 3.1E-15 117.0 12.8 27 185-211 112-138 (270)
420 PF02463 SMC_N: RecF/RecN/SMC 99.2 3.8E-10 8.2E-15 110.0 14.9 72 310-382 136-212 (220)
421 KOG0063 RNAse L inhibitor, ABC 99.2 1.3E-10 2.9E-15 120.5 11.9 179 181-383 97-288 (592)
422 cd03281 ABC_MSH5_euk MutS5 hom 99.2 1.2E-10 2.5E-15 113.8 10.9 62 313-374 93-160 (213)
423 TIGR01069 mutS2 MutS2 family p 99.2 1E-10 2.2E-15 133.4 10.5 59 309-369 384-446 (771)
424 PRK13695 putative NTPase; Prov 99.1 5.7E-11 1.2E-15 111.9 4.5 78 310-390 78-157 (174)
425 cd01128 rho_factor Transcripti 99.1 4.6E-10 9.9E-15 112.0 8.8 177 179-386 11-211 (249)
426 PRK14079 recF recombination pr 99.0 4.4E-09 9.6E-14 110.1 15.8 75 310-389 263-346 (349)
427 cd00820 PEPCK_HprK Phosphoenol 99.0 3.3E-10 7.1E-15 98.4 5.4 63 171-236 2-77 (107)
428 cd01124 KaiC KaiC is a circadi 99.0 3.3E-09 7.1E-14 100.2 12.3 73 309-382 70-163 (187)
429 cd03287 ABC_MSH3_euk MutS3 hom 99.0 1.1E-09 2.3E-14 107.6 9.1 37 171-207 18-54 (222)
430 PRK00409 recombination and DNA 99.0 2.4E-10 5.3E-15 130.7 4.5 77 309-388 389-469 (782)
431 PHA02562 46 endonuclease subun 98.9 1.3E-09 2.9E-14 120.6 7.8 78 308-386 466-555 (562)
432 cd03286 ABC_MSH6_euk MutS6 hom 98.9 8.5E-09 1.8E-13 101.0 12.3 38 170-207 16-53 (218)
433 PRK07721 fliI flagellum-specif 98.9 2.3E-08 4.9E-13 107.4 15.4 42 170-212 145-186 (438)
434 TIGR02788 VirB11 P-type DNA tr 98.9 2.9E-09 6.2E-14 109.7 7.7 71 320-396 210-280 (308)
435 PRK08533 flagellar accessory p 98.9 2.2E-08 4.7E-13 99.0 12.6 40 179-219 19-59 (230)
436 TIGR00634 recN DNA repair prot 98.8 6.2E-09 1.4E-13 115.6 8.9 76 309-385 439-519 (563)
437 PRK06793 fliI flagellum-specif 98.8 2.4E-08 5.2E-13 106.6 12.8 152 170-390 143-304 (432)
438 cd01120 RecA-like_NTPases RecA 98.8 2.5E-08 5.4E-13 90.8 11.1 29 311-339 68-96 (165)
439 TIGR00618 sbcc exonuclease Sbc 98.8 1.1E-08 2.3E-13 121.5 9.7 79 306-384 946-1036(1042)
440 PRK10869 recombination and rep 98.8 1.2E-08 2.7E-13 112.8 9.5 75 309-384 429-508 (553)
441 PTZ00132 GTP-binding nuclear p 98.8 9E-09 2E-13 99.9 6.6 46 311-356 151-203 (215)
442 PF13304 AAA_21: AAA domain; P 98.7 4.2E-08 9.1E-13 94.4 9.1 60 308-367 234-298 (303)
443 TIGR03238 dnd_assoc_3 dnd syst 98.7 2.1E-08 4.5E-13 107.2 5.2 62 172-235 20-81 (504)
444 PRK13830 conjugal transfer pro 98.7 7.6E-07 1.6E-11 103.0 18.5 69 325-393 649-729 (818)
445 PRK03918 chromosome segregatio 98.6 7.5E-08 1.6E-12 112.3 9.2 75 307-382 785-867 (880)
446 PRK01156 chromosome segregatio 98.6 1.4E-07 3E-12 110.4 10.1 75 307-382 798-883 (895)
447 COG0178 UvrA Excinuclease ATPa 98.6 1.2E-06 2.6E-11 97.8 16.1 101 290-397 465-577 (935)
448 PRK06067 flagellar accessory p 98.5 1.2E-06 2.6E-11 86.5 13.2 72 311-383 101-187 (234)
449 smart00382 AAA ATPases associa 98.5 4.9E-06 1.1E-10 72.6 15.1 31 310-340 60-90 (148)
450 TIGR00606 rad50 rad50. This fa 98.5 2E-07 4.4E-12 113.0 8.1 74 300-375 1191-1277(1311)
451 PRK10246 exonuclease subunit S 98.5 3.1E-07 6.8E-12 108.9 9.5 78 306-383 945-1032(1047)
452 PRK06995 flhF flagellar biosyn 98.5 6.2E-07 1.3E-11 97.1 10.9 69 172-243 244-314 (484)
453 cd01131 PilT Pilus retraction 98.5 2.2E-07 4.7E-12 89.7 6.6 57 320-382 66-122 (198)
454 COG3910 Predicted ATPase [Gene 98.4 3.7E-06 8E-11 79.5 13.3 58 308-367 127-188 (233)
455 TIGR02168 SMC_prok_B chromosom 98.4 3.6E-07 7.7E-12 109.1 8.0 76 306-382 1085-1165(1179)
456 TIGR02169 SMC_prok_A chromosom 98.4 5.7E-07 1.2E-11 107.6 8.3 76 307-383 1071-1151(1164)
457 cd02023 UMPK Uridine monophosp 98.4 2.8E-07 6E-12 88.5 4.5 23 186-208 1-23 (198)
458 cd01125 repA Hexameric Replica 98.4 2.7E-06 5.9E-11 84.3 11.4 22 184-205 1-22 (239)
459 PRK05399 DNA mismatch repair p 98.3 1.5E-06 3.3E-11 100.8 8.3 69 308-377 664-738 (854)
460 TIGR01026 fliI_yscN ATPase Fli 98.3 1.1E-05 2.3E-10 86.9 14.1 42 169-211 149-190 (440)
461 PRK07196 fliI flagellum-specif 98.2 1.5E-06 3.3E-11 92.9 5.6 70 169-239 141-238 (434)
462 cd01130 VirB11-like_ATPase Typ 98.2 1.3E-06 2.8E-11 83.3 4.6 37 175-211 16-52 (186)
463 PF13555 AAA_29: P-loop contai 98.2 1.7E-06 3.7E-11 67.7 4.2 36 174-209 12-48 (62)
464 PRK02224 chromosome segregatio 98.2 3.2E-06 7E-11 98.8 8.1 75 308-383 779-868 (880)
465 TIGR02655 circ_KaiC circadian 98.1 1.5E-06 3.2E-11 95.1 4.2 168 173-382 9-190 (484)
466 PRK13764 ATPase; Provisional 98.1 1.2E-05 2.7E-10 89.2 11.4 64 324-392 320-400 (602)
467 PF09818 ABC_ATPase: Predicted 98.1 3.3E-05 7.1E-10 81.9 13.4 88 295-385 309-415 (448)
468 TIGR00767 rho transcription te 98.1 5.2E-06 1.1E-10 87.6 7.1 78 88-210 104-194 (415)
469 TIGR01420 pilT_fam pilus retra 98.1 9.1E-06 2E-10 85.1 8.4 30 181-210 119-148 (343)
470 TIGR00235 udk uridine kinase. 98.0 3.3E-06 7.2E-11 81.8 3.8 42 182-225 4-45 (207)
471 TIGR03881 KaiC_arch_4 KaiC dom 98.0 4.5E-06 9.8E-11 81.9 4.8 33 173-205 8-41 (229)
472 cd01122 GP4d_helicase GP4d_hel 98.0 0.00016 3.6E-09 72.6 14.4 39 170-208 16-54 (271)
473 PRK13891 conjugal transfer pro 97.9 0.00033 7.2E-09 81.7 17.9 67 321-388 680-752 (852)
474 TIGR00416 sms DNA repair prote 97.9 4.7E-05 1E-09 82.6 10.0 43 179-221 89-131 (454)
475 cd00009 AAA The AAA+ (ATPases 97.9 0.00017 3.8E-09 63.4 11.6 27 183-209 18-44 (151)
476 TIGR00611 recf recF protein. A 97.9 2.9E-05 6.4E-10 81.9 7.4 58 310-368 275-341 (365)
477 PRK09825 idnK D-gluconate kina 97.9 1E-05 2.2E-10 76.7 3.4 28 183-210 2-29 (176)
478 PRK10078 ribose 1,5-bisphospho 97.8 1.2E-05 2.6E-10 76.6 3.7 27 184-210 2-28 (186)
479 TIGR03015 pepcterm_ATPase puta 97.8 5.6E-05 1.2E-09 75.6 8.5 40 171-210 29-69 (269)
480 cd01136 ATPase_flagellum-secre 97.8 3.2E-05 6.9E-10 80.2 6.6 43 169-212 55-97 (326)
481 PF00488 MutS_V: MutS domain V 97.8 0.00014 3.1E-09 72.2 10.7 36 171-206 30-65 (235)
482 PLN03210 Resistant to P. syrin 97.8 6.4E-05 1.4E-09 90.5 9.7 35 177-211 200-234 (1153)
483 PRK09183 transposase/IS protei 97.8 2.6E-05 5.5E-10 78.5 4.9 34 173-207 92-125 (259)
484 TIGR00152 dephospho-CoA kinase 97.8 3.8E-05 8.2E-10 73.2 5.8 70 313-384 60-133 (188)
485 cd01121 Sms Sms (bacterial rad 97.7 0.00037 8.1E-09 73.7 13.2 42 179-220 77-118 (372)
486 PRK06002 fliI flagellum-specif 97.7 3.2E-05 6.9E-10 83.1 5.0 42 169-211 151-192 (450)
487 PRK08149 ATP synthase SpaL; Va 97.7 3.9E-05 8.4E-10 82.1 5.7 42 169-211 137-178 (428)
488 PRK00300 gmk guanylate kinase; 97.7 2.2E-05 4.8E-10 75.5 3.5 28 182-209 3-30 (205)
489 PRK14722 flhF flagellar biosyn 97.7 0.00017 3.7E-09 76.1 10.0 38 171-208 124-161 (374)
490 COG0419 SbcC ATPase involved i 97.7 9.7E-05 2.1E-09 86.9 9.0 76 307-383 812-897 (908)
491 PLN02796 D-glycerate 3-kinase 97.7 1.3E-05 2.8E-10 83.3 1.0 54 172-225 80-141 (347)
492 TIGR02680 conserved hypothetic 97.7 6.6E-05 1.4E-09 91.4 6.8 57 308-364 1245-1313(1353)
493 PF13476 AAA_23: AAA domain; P 97.6 4.2E-05 9.2E-10 72.3 4.1 35 173-208 9-43 (202)
494 COG3044 Predicted ATPase of th 97.6 0.00049 1.1E-08 72.0 11.7 91 295-387 307-412 (554)
495 PRK05688 fliI flagellum-specif 97.6 7.1E-05 1.5E-09 80.5 5.7 42 169-211 154-195 (451)
496 TIGR03263 guanyl_kin guanylate 97.6 4.5E-05 9.8E-10 71.7 3.7 26 184-209 1-26 (180)
497 cd02025 PanK Pantothenate kina 97.6 3.1E-05 6.6E-10 76.1 2.5 41 186-226 1-43 (220)
498 PRK09270 nucleoside triphospha 97.6 5.1E-05 1.1E-09 74.8 3.9 30 183-212 32-61 (229)
499 TIGR02322 phosphon_PhnN phosph 97.6 4.4E-05 9.5E-10 71.9 3.2 27 184-210 1-27 (179)
500 TIGR02546 III_secr_ATP type II 97.6 8E-05 1.7E-09 80.0 5.3 43 169-212 131-173 (422)
No 1
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.3e-83 Score=762.48 Aligned_cols=490 Identities=61% Similarity=0.990 Sum_probs=429.2
Q ss_pred CCcccCC---CC---CCCCcHHhhhHHHhhccCCchhhhhhhccccC-----CCC---cccccccCCcHHHHHHHHHHHH
Q 044321 30 AGAFSMS---SR---EEQDDEEALIWAAVLEKLPTYNRLKKGILTTS-----RGE---ANEVDVNNLGQQERQRLVEKLV 95 (521)
Q Consensus 30 ~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~l~~~~~~~~~~r~~ 95 (521)
+++|++. .+ +.+||||+|+||| +||||||+|+|++++.+. .|+ ..++|+.+||.++++.+++|++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (1470)
T PLN03140 24 EDVFSGGSQSRRRTSSVDEDEEALKWAA-IEKLPTYSRLRTSIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQKFIDMVF 102 (1470)
T ss_pred hhhhhccchhccccccccCChHhhhhHH-hhhCCchhhhhhhhhhcccccccccccccccccccccCChHHHHHHHHhhh
Confidence 5888552 12 3478999999999 999999999999999653 122 2369999999999999999999
Q ss_pred HHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcccccCCCCcceeee
Q 044321 96 KVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILK 175 (521)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~iL~ 175 (521)
++.++|+++|+.+++++.+++|+++|+++|+|+||+|++++.++.+.+||++|.+.+.++.+....+...+++.++.||+
T Consensus 103 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~ 182 (1470)
T PLN03140 103 KVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILK 182 (1470)
T ss_pred cccchhHHHHHHHHHhhhccccCCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceecc
Confidence 99999999999999999999999999999999999999999999999999999999988876654433223334578999
Q ss_pred eeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC-------------------CceeeecCCccccCCCCHHHHHHH
Q 044321 176 DVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL-------------------KNRCDISQHDVHIGEMTVRETLAF 236 (521)
Q Consensus 176 dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~-------------------~~~~~v~q~d~~~~~lTV~E~l~f 236 (521)
||||.|+||++++|+||||||||||||+|+|+++++. +..+||+|++.|++.+||+||+.|
T Consensus 183 ~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f 262 (1470)
T PLN03140 183 DASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDF 262 (1470)
T ss_pred CCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHH
Confidence 9999999999999999999999999999999987641 113899999999999999999999
Q ss_pred HHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHH
Q 044321 237 SARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQR 316 (521)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqr 316 (521)
+++|++.+.++++..++++.++..++.|+.+++.++++...++.+.+..++.+|+.+||++|+||.||++++++||||||
T Consensus 263 ~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGer 342 (1470)
T PLN03140 263 SARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQK 342 (1470)
T ss_pred HHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccc
Confidence 99988765554444455566666666666677778887777666667788999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCChhh----HHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCH
Q 044321 317 KRVTTGEMLVGPAQALFMDEISNST----TFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPR 392 (521)
Q Consensus 317 QRvaIAraLv~~P~iLlLDEPTs~~----~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~ 392 (521)
|||+||++|+.+|++|||||||+++ +.++++.|+++++..+.|+|+++||+.++++++||+|++|++|+++|+|++
T Consensus 343 kRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~ 422 (1470)
T PLN03140 343 KRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPR 422 (1470)
T ss_pred eeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCH
Confidence 9999999999999999999999965 456777788876655778888888988999999999999999999999999
Q ss_pred hHHHHHHHHcCCCCCCCCCHHHHHHHhhChHHHHHHHhhccCCccccChhHHHHHHHhchhhhhHHHhhcCccccccccc
Q 044321 393 EYVLEFFKFMGFECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLEDELRIPFDKRKSHR 472 (521)
Q Consensus 393 ~~v~~~f~~~g~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 472 (521)
+++.+||+++||.||+++++|||++++++++++.+||.....|+.+.++++|+++|++|+.++++.+++..|+++++.++
T Consensus 423 ~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 502 (1470)
T PLN03140 423 DHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHK 502 (1470)
T ss_pred HHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhccc
Confidence 99999999999999999999999999999988889997777888889999999999999999999988888887777777
Q ss_pred ccccccccCCCHHHHHHHHHHHhHHHhhcChHHHHHHHHHHHhccccC
Q 044321 473 AALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQNENAPRFI 520 (521)
Q Consensus 473 ~~~~~~~y~~s~~~q~~~~~~R~~~~~~r~~~~~~~~~~q~~~~~~~~ 520 (521)
.++..++|.+|+|+|+++|++|+|++++||++++++|++|.+++++++
T Consensus 503 ~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~ 550 (1470)
T PLN03140 503 AALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIA 550 (1470)
T ss_pred ccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 777778899999999999999999999999999999999999988653
No 2
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-76 Score=670.28 Aligned_cols=439 Identities=55% Similarity=0.882 Sum_probs=402.5
Q ss_pred CCcHHhhhHHHhhccCCchhhhhhhccccCCCCcccccccCCcHHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCC
Q 044321 41 QDDEEALIWAAVLEKLPTYNRLKKGILTTSRGEANEVDVNNLGQQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISL 120 (521)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~ 120 (521)
++|||+++||+ ++||||++| +++.+.. .+++|+.+++..++..++++..+..++|+++++.+++++++++ ++
T Consensus 12 ~~~e~~~~~a~-~~~~pt~~~---~~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~--~~ 83 (1391)
T KOG0065|consen 12 DEDEEALRWAA-IERLPTFDR---SLLRSIF--ESEVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERIDRV--EL 83 (1391)
T ss_pred chhHHHHHHHH-HhcCccccc---hhhhhhc--cCcccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcCcc--cC
Confidence 34999999999 999999999 5554321 1279999999999999999999999999999999999999987 88
Q ss_pred CceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHH
Q 044321 121 PTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTL 200 (521)
Q Consensus 121 ~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTL 200 (521)
|.++++++++.+++++..| ||+.|...+.++..+...+.. ++....||+|+|+.++||+++.++||+|||||||
T Consensus 84 p~~~~~~~~~gv~a~~~~~----~t~~n~~~~~~~~~~~~~~~~--~~~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttl 157 (1391)
T KOG0065|consen 84 PTIEVRFSALGVEADVTYG----PTLVNILSNPLESILRMLGKR--KKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTL 157 (1391)
T ss_pred CceEEEeeecccccccccc----hhhhhhhhhHHHHHhhhcccc--ccccceeecCcceeEcCCceEEEecCCCCchHHH
Confidence 9999999999999988766 999999999888777666554 4455789999999999999999999999999999
Q ss_pred HHHHhCCCCCCC-------------------CceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcC
Q 044321 201 LLALAGKLDSSL-------------------KNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAG 261 (521)
Q Consensus 201 Lk~LaG~l~~~~-------------------~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~ 261 (521)
|++|+|.++... +..+|++|+|+|+++|||+|+|.|+++|++++.+++ ++.++++..
T Consensus 158 lkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~---~~~R~e~~~- 233 (1391)
T KOG0065|consen 158 LKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD---EVSRREKLA- 233 (1391)
T ss_pred HHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc---cccHHHHHH-
Confidence 999999875421 223899999999999999999999999999988765 444544321
Q ss_pred CCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCCh--
Q 044321 262 IKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISN-- 339 (521)
Q Consensus 262 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs-- 339 (521)
.++|.+++.+||++|+||+||++++||+||||||||+||++++++|++++|||+|+
T Consensus 234 ----------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GL 291 (1391)
T KOG0065|consen 234 ----------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGL 291 (1391)
T ss_pred ----------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccc
Confidence 26789999999999999999999999999999999999999999999999999999
Q ss_pred --hhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHH
Q 044321 340 --STTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQ 417 (521)
Q Consensus 340 --~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~ 417 (521)
+++.++++.|+++++..+.|.+++++|++++++++||+|++|++|++||+||++++++||+++||.||+++++||||+
T Consensus 292 DSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt 371 (1391)
T KOG0065|consen 292 DSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLT 371 (1391)
T ss_pred cHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHH
Confidence 578899999999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhChHHHHHHHhhccCCccccChhHHHHHHHhchhhhhHHHhhcCcccccccccccccccccCCCHHHHHHHHHHHhHH
Q 044321 418 EVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLEDELRIPFDKRKSHRAALTTKIYGVSEKQLLESCMSRELL 497 (521)
Q Consensus 418 ~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~ 497 (521)
++++.+++.|||.....|+.+.++.||.++|.+++.|+++..+++.|+++++.|+.++.+++|.+|+|+|+++|+.|+|+
T Consensus 372 ~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~ 451 (1391)
T KOG0065|consen 372 EVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFL 451 (1391)
T ss_pred HhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHH
Confidence 99999999999999989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcChHHHHHHHHHHHhcccc
Q 044321 498 PMKRNSFVYIFKLSQNENAPRF 519 (521)
Q Consensus 498 ~~~r~~~~~~~~~~q~~~~~~~ 519 (521)
+|+||+++|+++++|.+++.++
T Consensus 452 l~k~n~~~~~~~~~~~~i~ali 473 (1391)
T KOG0065|consen 452 LMKRNYFYYVFKTVQLVIQALI 473 (1391)
T ss_pred HHhCCceEEEhHHHHHHHHHHH
Confidence 9999999999999999988754
No 3
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=9.6e-56 Score=527.31 Aligned_cols=390 Identities=29% Similarity=0.446 Sum_probs=300.8
Q ss_pred CcHHHHHHHHhhhhhcCCCCC--ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcccccCCCCcceeeeeeE
Q 044321 101 YNEEFLLKLKNRIARVGISLP--TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILKDVS 178 (521)
Q Consensus 101 ~~~~~~~~~~~~~~~~g~~~~--~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~iL~dVS 178 (521)
|.+++++.+.++.++.+...| .++|+|+||+|++ ...+...+||++|.+.+....+...+. ..++...++||+|||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~iL~~vs 81 (1394)
T TIGR00956 4 NAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTRGFRKLK-KFRDTKTFDILKPMD 81 (1394)
T ss_pred CHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEE-EeccccccCchHHHHHHHHHHHHHHhc-ccCCCCcceeeeCCE
Confidence 445555443333334444444 8999999999998 444666789999988776654332221 122334578999999
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhCCCC----CCC------------------CceeeecCCccccCCCCHHHHHHH
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAGKLD----SSL------------------KNRCDISQHDVHIGEMTVRETLAF 236 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~----~~~------------------~~~~~v~q~d~~~~~lTV~E~l~f 236 (521)
+.+++||+++|+||||||||||||+|+|+.. +.. ...+|++|++.+++.+||+||+.|
T Consensus 82 ~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f 161 (1394)
T TIGR00956 82 GLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDF 161 (1394)
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHH
Confidence 9999999999999999999999999999863 221 013799999999999999999999
Q ss_pred HHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHH
Q 044321 237 SARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQR 316 (521)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqr 316 (521)
+++++....... ..+..+ ..+..++.+|+.+||.+++||.||++++++||||||
T Consensus 162 ~~~~~~~~~~~~---~~~~~~-----------------------~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGer 215 (1394)
T TIGR00956 162 AARCKTPQNRPD---GVSREE-----------------------YAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGER 215 (1394)
T ss_pred HHHhCCCCCCCC---CCCHHH-----------------------HHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccc
Confidence 887653211000 000000 011234668999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCChhhH----HHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCH
Q 044321 317 KRVTTGEMLVGPAQALFMDEISNSTT----FQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPR 392 (521)
Q Consensus 317 QRvaIAraLv~~P~iLlLDEPTs~~~----~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~ 392 (521)
|||+||++|+.+|++|||||||+++| .++++.|+++.++.+.|+|+++||+.++++++||+|++|++|+++|+|++
T Consensus 216 kRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~ 295 (1394)
T TIGR00956 216 KRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPA 295 (1394)
T ss_pred hHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCH
Confidence 99999999999999999999999655 45677777776544678888888888899999999999999999999999
Q ss_pred hHHHHHHHHcCCCCCCCCCHHHHHHHhhChHHHHHHHhhccCCccccChhHHHHHHHhchhhhhHHHhhcCccccc----
Q 044321 393 EYVLEFFKFMGFECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLEDELRIPFDKR---- 468 (521)
Q Consensus 393 ~~v~~~f~~~g~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 468 (521)
+++.+||+++||.||++.+++||+++++++.+ ++++... +...+.++++|+++|++|+.++++.+++..+.++.
T Consensus 296 ~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~-~~~~~~~-e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 373 (1394)
T TIGR00956 296 DKAKQYFEKMGFKCPDRQTTADFLTSLTSPAE-RQIKPGY-EKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESD 373 (1394)
T ss_pred HHHHHHHHHcCCCCCCCCChHHHHHhccChhh-hhccccc-cccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchh
Confidence 99999999999999999999999999998754 3444321 11234678999999999998888877765432110
Q ss_pred -----------ccccccccccccCCCHHHHHHHHHHHhHHHhhcChHHHHHHHHHHHhccccC
Q 044321 469 -----------KSHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQNENAPRFI 520 (521)
Q Consensus 469 -----------~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~r~~~~~~~~~~q~~~~~~~~ 520 (521)
...+.....++|..|+|+|+++|++|++++++||+.+++.|+++.+++++++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~ 436 (1394)
T TIGR00956 374 TKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALIL 436 (1394)
T ss_pred hHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 0011123346799999999999999999999999999999999999998754
No 4
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.5e-51 Score=456.02 Aligned_cols=325 Identities=34% Similarity=0.535 Sum_probs=255.4
Q ss_pred CceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHH
Q 044321 121 PTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTL 200 (521)
Q Consensus 121 ~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTL 200 (521)
..+++.|+++++..... . ...+++|+|||+.++|||++||+||||||||||
T Consensus 22 ~~~~~~~~~~~~~~~~~----------------------------~-~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTL 72 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEK----------------------------S-KKTKTILKGVSGTAKPGELLAIMGPSGSGKTTL 72 (613)
T ss_pred ccceeEEEEEEEEecCC----------------------------C-CccceeeeCcEEEEecCeEEEEECCCCCCHHHH
Confidence 35689999999986321 0 134689999999999999999999999999999
Q ss_pred HHHHhCCCCCCC-------------------CceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcC
Q 044321 201 LLALAGKLDSSL-------------------KNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAG 261 (521)
Q Consensus 201 Lk~LaG~l~~~~-------------------~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~ 261 (521)
|++|+|+..... +..+||.|+|.+++.+||+|++.|++.++.... ++
T Consensus 73 L~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~-------~~------- 138 (613)
T KOG0061|consen 73 LNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS-------LS------- 138 (613)
T ss_pred HHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC-------CC-------
Confidence 999999987531 123999999999999999999999998765421 11
Q ss_pred CCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChh-
Q 044321 262 IKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNS- 340 (521)
Q Consensus 262 i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~- 340 (521)
.++.+.+++++++.+||.+|+||++|+...||+||||||||+||..|+.+|.||||||||++
T Consensus 139 -----------------~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGL 201 (613)
T KOG0061|consen 139 -----------------KEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGL 201 (613)
T ss_pred -----------------HHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCc
Confidence 12345678999999999999999999988899999999999999999999999999999995
Q ss_pred ---hHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHH
Q 044321 341 ---TTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQ 417 (521)
Q Consensus 341 ---~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~ 417 (521)
++.++++.|++++++ |+|+|+++|||+.+++++||++++|++|+++|+|+++++.+||.++|++||+..|++||+.
T Consensus 202 DS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l 280 (613)
T KOG0061|consen 202 DSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLL 280 (613)
T ss_pred chhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHH
Confidence 567899999999987 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhChH--HHHHHHhhccCCccccChhHHHHHHH-hchhhhhHHHhhcCcccccccccccccccccCCCHHHHHHHHHHH
Q 044321 418 EVTSQK--EQQQYWAREEEPYRFVTVKGFTDTFK-SFYLGKKLEDELRIPFDKRKSHRAALTTKIYGVSEKQLLESCMSR 494 (521)
Q Consensus 418 ~v~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R 494 (521)
++.+.. .+... ...........++ .....+... ......... ......+..+||.|++.+++|
T Consensus 281 ~l~s~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~s~~~q~~~L~~R 346 (613)
T KOG0061|consen 281 DLLSVDSGTRELE--------EAVRIAKLINKFSQTDNLKKTLE-ALEKSLSTS-----KKVEIGTSPSWWTQFKILLKR 346 (613)
T ss_pred HHHccCCCchhHH--------hHHHHHHHhhhccccchhhhhHH-HHhhhcccc-----cccccccCCcHHHHHHHHHHH
Confidence 987732 11000 0000001111111 000001100 000000000 000111178999999999999
Q ss_pred hHHHhhcChHHHHHHHHHHHhccccC
Q 044321 495 ELLPMKRNSFVYIFKLSQNENAPRFI 520 (521)
Q Consensus 495 ~~~~~~r~~~~~~~~~~q~~~~~~~~ 520 (521)
.+..++||+.++..|++|.++++.++
T Consensus 347 ~~~~~~R~~~~~~~r~~~~~~~~~~l 372 (613)
T KOG0061|consen 347 SLKNIRRDPSLLLLRLIQSLVTGLLL 372 (613)
T ss_pred HhHHHhhcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988653
No 5
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.5e-49 Score=443.83 Aligned_cols=359 Identities=24% Similarity=0.373 Sum_probs=250.8
Q ss_pred CceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHH
Q 044321 121 PTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTL 200 (521)
Q Consensus 121 ~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTL 200 (521)
+.++++|.++++.+...-...+.. .+...+...-. ...+.+.++++.+|+||||+|++||+++|+||||||||||
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~----~~~~~~~~~~~-~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTL 110 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGS----NIKRILGHKPK-ISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTL 110 (659)
T ss_pred CceEEEEEeEEEEEccCCCccccc----ccccccccccc-cccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHH
Confidence 467899999999864220000010 01111111001 1112233455789999999999999999999999999999
Q ss_pred HHHHhCCCCCC--C---------------CceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCC
Q 044321 201 LLALAGKLDSS--L---------------KNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIK 263 (521)
Q Consensus 201 Lk~LaG~l~~~--~---------------~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~ 263 (521)
|++|+|++++. . ...+||+|++.+++.+||+||+.|++.+..... .+.
T Consensus 111 L~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~-------~~~-------- 175 (659)
T PLN03211 111 LNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKS-------LTK-------- 175 (659)
T ss_pred HHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCC-------CCH--------
Confidence 99999998763 1 123799999999999999999999765432110 000
Q ss_pred CCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHH
Q 044321 264 PDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTF 343 (521)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~ 343 (521)
.+....++++++.+||.+++||.+|+..+++|||||||||+||++|+.+|++|||||||+++|.
T Consensus 176 ----------------~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~ 239 (659)
T PLN03211 176 ----------------QEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDA 239 (659)
T ss_pred ----------------HHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCH
Confidence 0122356789999999999999999999999999999999999999999999999999998776
Q ss_pred HHHHHHHHHHHH---cCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHHHhh
Q 044321 344 QIVNSLRQFIHI---LEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQEVT 420 (521)
Q Consensus 344 ~i~~~L~~l~~~---~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~v~ 420 (521)
.....+.+++++ .+.|+|+++|++..+++++||+|++|++|++++.|+++++.+||+++||.||.+.|+|||+.+++
T Consensus 240 ~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~ 319 (659)
T PLN03211 240 TAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLA 319 (659)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHc
Confidence 555444444432 36677777777766789999999999999999999999999999999999999999999999998
Q ss_pred ChHHHHHHHhhccCCccccChhHHHHHHHhchhhhhHHHhhcCc-ccc--cc-----cccc-cccccccCCCHHHHHHHH
Q 044321 421 SQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLEDELRIP-FDK--RK-----SHRA-ALTTKIYGVSEKQLLESC 491 (521)
Q Consensus 421 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~--~~-----~~~~-~~~~~~y~~s~~~q~~~~ 491 (521)
+...+.........+ ...+.+.+.|++.. .+...+.+... ... .. ..+. ......|..|||+|+++|
T Consensus 320 ~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L 395 (659)
T PLN03211 320 NGVCQTDGVSEREKP---NVKQSLVASYNTLL-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSIL 395 (659)
T ss_pred CccccCCCccccccc---hHHHHHHHHHHhhc-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHH
Confidence 754211000000011 11234455554321 11111111100 000 00 0000 011123667999999999
Q ss_pred HHHhHHHhhcChHHHHHHHHHHHhccccC
Q 044321 492 MSRELLPMKRNSFVYIFKLSQNENAPRFI 520 (521)
Q Consensus 492 ~~R~~~~~~r~~~~~~~~~~q~~~~~~~~ 520 (521)
++|+++. +||+.++..|++|.++++.++
T Consensus 396 ~~R~~~~-~r~~~~~~~r~~~~i~~~ll~ 423 (659)
T PLN03211 396 LQRSLKE-RKHESFNTLRVFQVIAAALLA 423 (659)
T ss_pred HHHHHHH-HhCcHHHHHHHHHHHHHHHHH
Confidence 9999988 888888889999999988764
No 6
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.5e-49 Score=442.54 Aligned_cols=314 Identities=28% Similarity=0.421 Sum_probs=247.2
Q ss_pred CCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC--C-----------------ceeeecCCccccCCC
Q 044321 168 KKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL--K-----------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 168 ~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~--~-----------------~~~~v~q~d~~~~~l 228 (521)
++++.+|+|||++|+|||+++|+|||||||||||++|+|+.++.. . ..+|++|++.+++.+
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 345679999999999999999999999999999999999887631 1 128999999999999
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCcc-
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI- 307 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~- 307 (521)
||+||+.|++.+...... +. .+....++.+++.+||.+++||.+|+..
T Consensus 115 TV~e~l~f~~~~~~~~~~-------~~------------------------~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 163 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRV-------TK------------------------KEKRERVDEVLQALGLRKCANTRIGVPGR 163 (617)
T ss_pred cHHHHHHHHHhcCCCCCC-------CH------------------------HHHHHHHHHHHHHcCchhcCcCccCCCCC
Confidence 999999998876432110 00 1122357889999999999999999853
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHH----HHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQ----IVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~----i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
.++|||||||||+||++|+.+|++|||||||+++|.. +++.|+++.+ .+.|+|+++||+..+++++||++++|++
T Consensus 164 ~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~ 242 (617)
T TIGR00955 164 VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAE 242 (617)
T ss_pred CCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeC
Confidence 6899999999999999999999999999999976654 5555555543 3678888888887889999999999999
Q ss_pred CEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHHHhhChHHHHHHHhhccCCccccChhHHHHHHHhchhhhhHHHhhcC
Q 044321 384 GHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLEDELRI 463 (521)
Q Consensus 384 G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 463 (521)
|+++|+|+++++.+||+++||.||+..+++||+.++++..... ......+.+++.+.|+++..+++..+.+..
T Consensus 243 G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 315 (617)
T TIGR00955 243 GRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGS-------ENESRERIEKICDSFAVSDIGRDMLVNTNL 315 (617)
T ss_pred CeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccc-------ccchHHHHHHHHHHHhcchhhHHHHHHhhh
Confidence 9999999999999999999999999999999999987643211 000112346677888877766665544332
Q ss_pred cccccc---cccccccccccCCCHHHHHHHHHHHhHHHhhcChHHHHHHHHHHHhccccC
Q 044321 464 PFDKRK---SHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQNENAPRFI 520 (521)
Q Consensus 464 ~~~~~~---~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~r~~~~~~~~~~q~~~~~~~~ 520 (521)
...... ..........|..++|.|+++|++|+++.++||+.++..++++.++++.++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~ 375 (617)
T TIGR00955 316 WSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILI 375 (617)
T ss_pred hhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 111100 111111235688999999999999999999999999999999999887654
No 7
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=5e-48 Score=460.41 Aligned_cols=335 Identities=23% Similarity=0.374 Sum_probs=256.9
Q ss_pred CceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHH
Q 044321 121 PTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTL 200 (521)
Q Consensus 121 ~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTL 200 (521)
..+.+.|+||++.+....+. .......+.+.+|+|||+.|+||++++|+||||||||||
T Consensus 864 ~~~~~~~~~v~y~v~~~~~~---------------------~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTL 922 (1470)
T PLN03140 864 TPLAMSFDDVNYFVDMPAEM---------------------KEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTL 922 (1470)
T ss_pred CcceEEEEEEEEEEccCccc---------------------cccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHH
Confidence 34579999999987432100 000112244579999999999999999999999999999
Q ss_pred HHHHhCCCCCC--C----------------CceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCC
Q 044321 201 LLALAGKLDSS--L----------------KNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGI 262 (521)
Q Consensus 201 Lk~LaG~l~~~--~----------------~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i 262 (521)
|++|+|+..+. . ...+|++|++.+++.+||+||+.|++.++..... +.
T Consensus 923 L~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~-------~~------- 988 (1470)
T PLN03140 923 MDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEV-------SK------- 988 (1470)
T ss_pred HHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCC-------CH-------
Confidence 99999987531 0 1238999999999999999999998654321100 00
Q ss_pred CCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhH
Q 044321 263 KPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTT 342 (521)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~ 342 (521)
.+....++++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|++|||||||+++|
T Consensus 989 -----------------~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD 1051 (1470)
T PLN03140 989 -----------------EEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051 (1470)
T ss_pred -----------------HHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 011235678999999999999999987778999999999999999999999999999999876
Q ss_pred HH----HHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeC-CEEEEecCH----hHHHHHHHHc-CC-CCCCCCC
Q 044321 343 FQ----IVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISN-GHIVYQGPR----EYVLEFFKFM-GF-ECPKRKG 411 (521)
Q Consensus 343 ~~----i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~-G~iv~~G~~----~~v~~~f~~~-g~-~~p~~~~ 411 (521)
.. +++.|+++.+ .+.|+|+++||+..+++++||++++|++ |+++|+|+. +++.+||+++ |+ .||+..|
T Consensus 1052 ~~~a~~v~~~L~~l~~-~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~N 1130 (1470)
T PLN03140 1052 ARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYN 1130 (1470)
T ss_pred HHHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCC
Confidence 65 4555555543 3678888887777678999999999996 899999996 5899999997 66 5999999
Q ss_pred HHHHHHHhhChHHHHHHHhhccCCccccChhHHHHHHHhchhhhhHHHhhcCcccccccccccccccccCCCHHHHHHHH
Q 044321 412 VADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLEDELRIPFDKRKSHRAALTTKIYGVSEKQLLESC 491 (521)
Q Consensus 412 ~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~ 491 (521)
+|||+.++++..... ....++++.|+.|+.+++..+++..........+.....++|..|+|.|+++|
T Consensus 1131 PAd~~l~v~~~~~~~------------~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l 1198 (1470)
T PLN03140 1131 PATWMLEVSSLAAEV------------KLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSC 1198 (1470)
T ss_pred chhhhhhhhcccccc------------cccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHH
Confidence 999999997642110 12247899999998877765544211100011111122467999999999999
Q ss_pred HHHhHHHhhcChHHHHHHHHHHHhccccC
Q 044321 492 MSRELLPMKRNSFVYIFKLSQNENAPRFI 520 (521)
Q Consensus 492 ~~R~~~~~~r~~~~~~~~~~q~~~~~~~~ 520 (521)
++|+++.+||||.++..|+++.+++++++
T Consensus 1199 ~~R~~~~~~R~p~~~~~r~~~~i~~al~~ 1227 (1470)
T PLN03140 1199 LWKQWWTYWRSPDYNLVRFFFTLAAALMV 1227 (1470)
T ss_pred HHHHHHHHHCCHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988764
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.3e-49 Score=446.55 Aligned_cols=306 Identities=28% Similarity=0.415 Sum_probs=257.9
Q ss_pred CCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC------------------CCceeeecCCccccCCCC
Q 044321 168 KKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS------------------LKNRCDISQHDVHIGEMT 229 (521)
Q Consensus 168 ~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~------------------~~~~~~v~q~d~~~~~lT 229 (521)
.+++++|+|||+-++||.+|||+|+|||||||||++|+|+.... .+..+||.|+|.|.+++|
T Consensus 801 G~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~T 880 (1391)
T KOG0065|consen 801 GGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELT 880 (1391)
T ss_pred ccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccc
Confidence 36678999999999999999999999999999999999985421 134599999999999999
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCC
Q 044321 230 VRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILR 309 (521)
Q Consensus 230 V~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 309 (521)
|+|.|.|++.++.+.. +. ..+..+.++++++.++|++++|..||... .
T Consensus 881 VrESL~fSA~LRlp~~-------v~------------------------~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~ 928 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKE-------VS------------------------DEEKYEYVEEVIELLELKEYADALVGLPG-S 928 (1391)
T ss_pred hHHHHHHHHHHcCCCc-------CC------------------------HHHHHHHHHHHHHHhCchhhhhhhccCCC-C
Confidence 9999999988754321 11 11223568999999999999999999866 9
Q ss_pred CCChHHHHHHHHHHHHcCCC-cEEEEeCCChhhHH----HHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEe-C
Q 044321 310 GISGGQRKRVTTGEMLVGPA-QALFMDEISNSTTF----QIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILIS-N 383 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P-~iLlLDEPTs~~~~----~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~-~ 383 (521)
|||.+||||++||-.|+.+| .||||||||||+|. .+++.+++++. .|.|+++++|||+..+++.||++++|. .
T Consensus 929 GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrG 1007 (1391)
T KOG0065|consen 929 GLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRG 1007 (1391)
T ss_pred CCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcC
Confidence 99999999999999999999 99999999998665 46777777776 589999999999999999999999997 5
Q ss_pred CEEEEecCH----hHHHHHHHHcC-CCCCCCCCHHHHHHHhhChHHHHHHHhhccCCccccChhHHHHHHHhchhhhhHH
Q 044321 384 GHIVYQGPR----EYVLEFFKFMG-FECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLE 458 (521)
Q Consensus 384 G~iv~~G~~----~~v~~~f~~~g-~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (521)
|+.||.|+. +.+++||++.| ..||...|||||+.++++...+.. ...+|++.|++|..++++.
T Consensus 1008 GqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~------------~~~D~a~~w~~S~e~k~~~ 1075 (1391)
T KOG0065|consen 1008 GQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEAS------------LSVDFAEIWKNSEEYKRNK 1075 (1391)
T ss_pred CeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhcccccccc------------cCccHHHHHhccHHHHHHH
Confidence 899999986 45778999987 899999999999999987532211 1237999999999998887
Q ss_pred Hhhc---CcccccccccccccccccCCCHHHHHHHHHHHhHHHhhcChHHHHHHHHHHHhccccC
Q 044321 459 DELR---IPFDKRKSHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQNENAPRFI 520 (521)
Q Consensus 459 ~~l~---~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~r~~~~~~~~~~q~~~~~~~~ 520 (521)
+++. .+.+. ........+.|+.|+|.|++.|++|+++..||+|.+...|+++.++.++||
T Consensus 1076 e~v~~l~~~~~~--~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~i 1138 (1391)
T KOG0065|consen 1076 ELVKELSQPPPG--FSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFI 1138 (1391)
T ss_pred HHHHHHhcCCcc--CCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhh
Confidence 6643 43332 233344457799999999999999999999999999999999999999987
No 9
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=4.8e-46 Score=444.21 Aligned_cols=306 Identities=26% Similarity=0.390 Sum_probs=237.5
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC---CC---------------CceeeecCCccccCCCCHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS---SL---------------KNRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~---~~---------------~~~~~v~q~d~~~~~lTV~ 231 (521)
.+.+|+|||+.|+||++++|+|||||||||||++|+|+.++ .. +..+||+|++.+++.+||+
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~ 854 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVR 854 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHH
Confidence 45799999999999999999999999999999999999862 21 1137999999999999999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGI 311 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~L 311 (521)
||+.|++.++..... + ..+....++++++.+||.+++|+.+|+. ..+|
T Consensus 855 E~L~~~a~l~~~~~~-------~------------------------~~~~~~~v~~~l~~l~L~~~~d~~v~~~-~~~L 902 (1394)
T TIGR00956 855 ESLRFSAYLRQPKSV-------S------------------------KSEKMEYVEEVIKLLEMESYADAVVGVP-GEGL 902 (1394)
T ss_pred HHHHHHHHhCCCCCC-------C------------------------HHHHHHHHHHHHHHcCChhhCCCeeCCC-CCCC
Confidence 999998765421100 0 0112235678999999999999999863 3489
Q ss_pred ChHHHHHHHHHHHHcCCCc-EEEEeCCChhhHHH----HHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCC-E
Q 044321 312 SGGQRKRVTTGEMLVGPAQ-ALFMDEISNSTTFQ----IVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNG-H 385 (521)
Q Consensus 312 SGGqrQRvaIAraLv~~P~-iLlLDEPTs~~~~~----i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G-~ 385 (521)
||||||||+||++|+.+|+ +|||||||+++|.. +++.|+++.+ .+.|+|+++||+...+++.||+|++|++| +
T Consensus 903 SgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~ 981 (1394)
T TIGR00956 903 NVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGGQ 981 (1394)
T ss_pred CHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCCE
Confidence 9999999999999999997 99999999977654 4555555543 36677887777766678899999999997 9
Q ss_pred EEEecCH----hHHHHHHHHcCC-CCCCCCCHHHHHHHhhChHHHHHHHhhccCCccccChhHHHHHHHhchhhhhHHHh
Q 044321 386 IVYQGPR----EYVLEFFKFMGF-ECPKRKGVADFLQEVTSQKEQQQYWAREEEPYRFVTVKGFTDTFKSFYLGKKLEDE 460 (521)
Q Consensus 386 iv~~G~~----~~v~~~f~~~g~-~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (521)
++|.|++ +++.+||+..|+ +||+..|+|||+.++.+..... ....++.+.|+.+...++..++
T Consensus 982 iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~------------~~~~~~~~~~~~s~~~~~~~~~ 1049 (1394)
T TIGR00956 982 TVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGA------------HANQDYHEVWRNSSEYQAVKNE 1049 (1394)
T ss_pred EEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhccccc------------chhccHHHHHhcCHHHHHHHHH
Confidence 9999997 578999999996 9999999999999987642110 0123567788877766655444
Q ss_pred hcC---cccccccccccccccccCCCHHHHHHHHHHHhHHHhhcChHHHHHHHHHHHhccccC
Q 044321 461 LRI---PFDKRKSHRAALTTKIYGVSEKQLLESCMSRELLPMKRNSFVYIFKLSQNENAPRFI 520 (521)
Q Consensus 461 l~~---~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~r~~~~~~~~~~q~~~~~~~~ 520 (521)
+.. +.............++|..|+|.|+++|++|.++.+||||.++..|++|.+++++++
T Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~ 1112 (1394)
T TIGR00956 1050 LDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFI 1112 (1394)
T ss_pred HHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 322 111010000111225799999999999999999999999999999999999998875
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8e-46 Score=351.17 Aligned_cols=208 Identities=24% Similarity=0.350 Sum_probs=174.3
Q ss_pred cCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccc
Q 044321 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVH 224 (521)
Q Consensus 165 ~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~ 224 (521)
.+.++..++|+|||++|++||+++|+|||||||||||+||+|+..++.+ ..++|+|+..+
T Consensus 9 ~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnL 88 (240)
T COG1126 9 SKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNL 88 (240)
T ss_pred eEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccc
Confidence 3445677899999999999999999999999999999999998877632 12689999999
Q ss_pred cCCCCHHHHHHHHHHh-ccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccc
Q 044321 225 IGEMTVRETLAFSARC-QGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMV 303 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~-~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 303 (521)
||++||.||+.++... .+ ....++++.+..+|+.+||.+.+|.++
T Consensus 89 FPHlTvleNv~lap~~v~~----------------------------------~~k~eA~~~A~~lL~~VGL~~ka~~yP 134 (240)
T COG1126 89 FPHLTVLENVTLAPVKVKK----------------------------------LSKAEAREKALELLEKVGLADKADAYP 134 (240)
T ss_pred cccchHHHHHHhhhHHHcC----------------------------------CCHHHHHHHHHHHHHHcCchhhhhhCc
Confidence 9999999999987431 11 112334556778999999999998766
Q ss_pred cCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 304 GDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 304 g~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
. .|||||||||+|||||+.+|+++++|||||++|++.+..+.+.+..+ .+.|.+++||.+..+.+.+|||++|
T Consensus 135 ~-----qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFm 209 (240)
T COG1126 135 A-----QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFM 209 (240)
T ss_pred c-----ccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEe
Confidence 5 59999999999999999999999999999999998776665554433 4566666789999999999999999
Q ss_pred eCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHHHh
Q 044321 382 SNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQEV 419 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~v 419 (521)
++|+++..|+++++ |..|.+..+.+||..+
T Consensus 210 d~G~iie~g~p~~~--------f~~p~~~R~~~FL~~i 239 (240)
T COG1126 210 DQGKIIEEGPPEEF--------FDNPKSERTRQFLSKI 239 (240)
T ss_pred eCCEEEEecCHHHH--------hcCCCCHHHHHHHHhh
Confidence 99999999999988 6789988899998653
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.5e-42 Score=340.01 Aligned_cols=205 Identities=26% Similarity=0.324 Sum_probs=173.3
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccccC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHIG 226 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~~ 226 (521)
+...+|+|||++|++|++++|+|.||||||||+++|+++..|+.+ ..++|+|+..++.
T Consensus 17 ~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLs 96 (339)
T COG1135 17 GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLS 96 (339)
T ss_pred CceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccc
Confidence 345799999999999999999999999999999999999888742 1289999999999
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCc
Q 044321 227 EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDE 306 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 306 (521)
..||.+|++|..++.+.. +.+++.++.++|+.+||++.++.++.
T Consensus 97 srTV~~NvA~PLeiag~~----------------------------------k~ei~~RV~elLelVgL~dk~~~yP~-- 140 (339)
T COG1135 97 SRTVFENVAFPLELAGVP----------------------------------KAEIKQRVAELLELVGLSDKADRYPA-- 140 (339)
T ss_pred cchHHhhhhhhHhhcCCC----------------------------------HHHHHHHHHHHHHHcCChhhhccCch--
Confidence 999999999998766532 12345678889999999998887665
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHH----HHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNS----LRQFIHILEGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~----L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
+|||||||||+|||||+.+|+|||+|||||++|++..+. |+++-+++ +.+|++++|.++.+.++||+|.+|+
T Consensus 141 ---qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~l-glTIvlITHEm~Vvk~ic~rVavm~ 216 (339)
T COG1135 141 ---QLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINREL-GLTIVLITHEMEVVKRICDRVAVLD 216 (339)
T ss_pred ---hcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHc-CCEEEEEechHHHHHHHhhhheEee
Confidence 599999999999999999999999999999776655554 44444443 5566667788999999999999999
Q ss_pred CCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHHHhhC
Q 044321 383 NGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQEVTS 421 (521)
Q Consensus 383 ~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~v~s 421 (521)
+|++++.|+..++ |..|.+.-+..|+.+...
T Consensus 217 ~G~lvE~G~v~~v--------F~~Pk~~~t~~fi~~~~~ 247 (339)
T COG1135 217 QGRLVEEGTVSEV--------FANPKHAITQEFIGETLE 247 (339)
T ss_pred CCEEEEeccHHHh--------hcCcchHHHHHHHHhhcc
Confidence 9999999999998 678988888888887654
No 12
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-41 Score=348.12 Aligned_cols=198 Identities=30% Similarity=0.395 Sum_probs=171.6
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHHHH
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRETLA 235 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~l~ 235 (521)
+|+|||++|++||+++|+|||||||||||++|||+..|+.+ ..++|+|+..+||+|||+||++
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Nia 97 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIA 97 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhh
Confidence 99999999999999999999999999999999999987632 3489999999999999999999
Q ss_pred HHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHH
Q 044321 236 FSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQ 315 (521)
Q Consensus 236 f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGq 315 (521)
|+.+..+... ++++.++.++.+.|+|++..|+++. +|||||
T Consensus 98 f~Lk~~~~~k----------------------------------~ei~~rV~eva~~L~l~~lL~r~P~-----~LSGGQ 138 (338)
T COG3839 98 FGLKLRGVPK----------------------------------AEIDKRVKEVAKLLGLEHLLNRKPL-----QLSGGQ 138 (338)
T ss_pred hhhhhCCCch----------------------------------HHHHHHHHHHHHHcCChhHHhcCcc-----cCChhh
Confidence 9988765421 2345578889999999999987764 599999
Q ss_pred HHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCH
Q 044321 316 RKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPR 392 (521)
Q Consensus 316 rQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~ 392 (521)
||||+|||||+.+|++++||||.|++|.+....++..++++ -++++|.+||+..++..++|+|++|++|+|...|++
T Consensus 139 rQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p 218 (338)
T COG3839 139 RQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTP 218 (338)
T ss_pred HHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCCh
Confidence 99999999999999999999999988887766666554433 246667778999999999999999999999999999
Q ss_pred hHHHHHHHHcCCCCCCCCCHHHHHH
Q 044321 393 EYVLEFFKFMGFECPKRKGVADFLQ 417 (521)
Q Consensus 393 ~~v~~~f~~~g~~~p~~~~~adfl~ 417 (521)
.++ |..|.+.-+|.|+-
T Consensus 219 ~el--------y~~P~n~fVA~FiG 235 (338)
T COG3839 219 LEL--------YERPANLFVAGFIG 235 (338)
T ss_pred HHH--------hhCccchhhhhhcC
Confidence 999 56788888888874
No 13
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=5.5e-42 Score=352.17 Aligned_cols=205 Identities=29% Similarity=0.388 Sum_probs=173.6
Q ss_pred CCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCH
Q 044321 168 KKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 168 ~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV 230 (521)
++...+|+|||++|++||+++|+|||||||||||++|||+..|+.+ ..++|+|+-.+||+|||
T Consensus 15 yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV 94 (352)
T COG3842 15 FGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTV 94 (352)
T ss_pred cCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcH
Confidence 3467899999999999999999999999999999999999988742 23899999999999999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
.||++|+.+...... ..++..++.++|+.++|.+.++.++. .
T Consensus 95 ~~NVafGLk~~~~~~---------------------------------~~~i~~rv~e~L~lV~L~~~~~R~p~-----q 136 (352)
T COG3842 95 EENVAFGLKVRKKLK---------------------------------KAEIKARVEEALELVGLEGFADRKPH-----Q 136 (352)
T ss_pred HHHhhhhhhhcCCCC---------------------------------HHHHHHHHHHHHHHcCchhhhhhChh-----h
Confidence 999999977332110 11234578889999999998877665 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHH----HHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQ----FIHILEGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~----l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
|||||||||+|||||+.+|++||||||.+++|......++. +.++. +++.|.+||+..+++.++|+|++|++|+|
T Consensus 137 LSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~-giT~i~VTHDqeEAl~msDrI~Vm~~G~I 215 (352)
T COG3842 137 LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQREL-GITFVYVTHDQEEALAMSDRIAVMNDGRI 215 (352)
T ss_pred hChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHhhhccceEEccCCce
Confidence 99999999999999999999999999999888766665544 44433 56666678999999999999999999999
Q ss_pred EEecCHhHHHHHHHHcCCCCCCCCCHHHHHHHh
Q 044321 387 VYQGPREYVLEFFKFMGFECPKRKGVADFLQEV 419 (521)
Q Consensus 387 v~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~v 419 (521)
...|+++++ |..|...-+|+|+.+.
T Consensus 216 ~Q~gtP~ei--------Y~~P~~~fVA~FiG~~ 240 (352)
T COG3842 216 EQVGTPEEI--------YERPATRFVADFIGES 240 (352)
T ss_pred eecCCHHHH--------hhCcchHHHHHHhCcc
Confidence 999999999 6789999999998754
No 14
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=6e-41 Score=324.04 Aligned_cols=190 Identities=26% Similarity=0.327 Sum_probs=160.3
Q ss_pred CCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCC
Q 044321 168 KKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 168 ~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~l 228 (521)
++++.+++|+||+|++||+++++|||||||||+||+|++++.|+.+ ..+||-|+..+||++
T Consensus 11 y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~ 90 (309)
T COG1125 11 YGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHL 90 (309)
T ss_pred cCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCc
Confidence 3467899999999999999999999999999999999999998742 128999999999999
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc--cccccccCc
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV--CADTMVGDE 306 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~--~~dt~vg~~ 306 (521)
||.||+.+-..+.+... ++++.+++++|+.+||+. .++ +
T Consensus 91 Tv~eNIa~VP~L~~w~k----------------------------------~~i~~r~~ELl~lvgL~p~~~~~-----R 131 (309)
T COG1125 91 TVAENIATVPKLLGWDK----------------------------------ERIKKRADELLDLVGLDPSEYAD-----R 131 (309)
T ss_pred cHHHHHHhhhhhcCCCH----------------------------------HHHHHHHHHHHHHhCCCHHHHhh-----c
Confidence 99999999776654421 234557899999999974 455 4
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+++.|||||+|||.+||||+.+|++|+||||++++|+-....|++.+... =++|||.+||+.+|++.++|+|.+|++
T Consensus 132 yP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~ 211 (309)
T COG1125 132 YPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDA 211 (309)
T ss_pred CchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecC
Confidence 55679999999999999999999999999999988876666665544332 245566678999999999999999999
Q ss_pred CEEEEecCHhHHH
Q 044321 384 GHIVYQGPREYVL 396 (521)
Q Consensus 384 G~iv~~G~~~~v~ 396 (521)
|+++.+++|++++
T Consensus 212 G~i~Q~~~P~~il 224 (309)
T COG1125 212 GEIVQYDTPDEIL 224 (309)
T ss_pred CeEEEeCCHHHHH
Confidence 9999999999985
No 15
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.8e-41 Score=331.53 Aligned_cols=210 Identities=29% Similarity=0.435 Sum_probs=173.4
Q ss_pred cCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccc
Q 044321 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVH 224 (521)
Q Consensus 165 ~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~ 224 (521)
++..+...+++|||++|+.||+++|+|||||||||||++|+|+..|+.+ ..++|+|+..+
T Consensus 9 ~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YAL 88 (345)
T COG1118 9 KKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYAL 88 (345)
T ss_pred hhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhh
Confidence 3445667899999999999999999999999999999999999988632 22899999999
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
|++|||.+||+|+.+++.. +|. ..+++.++.++|+.+.|++.++.++
T Consensus 89 F~HmtVa~NIAFGl~~~~~-------------------~p~-------------~~~~r~rv~elL~lvqL~~la~ryP- 135 (345)
T COG1118 89 FPHMTVADNIAFGLKVRKE-------------------RPS-------------EAEIRARVEELLRLVQLEGLADRYP- 135 (345)
T ss_pred cccchHHhhhhhccccccc-------------------CCC-------------hhhHHHHHHHHHHHhcccchhhcCc-
Confidence 9999999999999876521 010 1123456788999999998777554
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
.+|||||||||++||||+..|++|+||||++++|..+.+.|++.+.+. -+.+.+.+||+.++++++||+|++|
T Consensus 136 ----~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl 211 (345)
T COG1118 136 ----AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVL 211 (345)
T ss_pred ----hhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEe
Confidence 569999999999999999999999999999999988887777765443 1444555679999999999999999
Q ss_pred eCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHHHh
Q 044321 382 SNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQEV 419 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~v 419 (521)
++|+|...|+++++ |..|...-+..|+-++
T Consensus 212 ~~G~Ieqvg~p~ev--------~~~P~s~fV~~f~G~~ 241 (345)
T COG1118 212 NQGRIEQVGPPDEV--------YDHPASRFVARFLGEV 241 (345)
T ss_pred cCCeeeeeCCHHHH--------hcCCCccceecccccc
Confidence 99999999999999 5677777777777554
No 16
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-40 Score=321.84 Aligned_cols=177 Identities=24% Similarity=0.342 Sum_probs=147.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------ceeeecCCccccCCCCHHHHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------NRCDISQHDVHIGEMTVRETLAF 236 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------~~~~v~q~d~~~~~lTV~E~l~f 236 (521)
..+|+||||+|.+||+++|+||||||||||||+|+|+..|+.+ ..+||+|++.++|.+||.+|+.|
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l 95 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVAL 95 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhhee
Confidence 5799999999999999999999999999999999999988642 23899999999999999999999
Q ss_pred HHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHH
Q 044321 237 SARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQR 316 (521)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqr 316 (521)
+....+... .+...+++.+|+.+||.+..|.++ +.||||||
T Consensus 96 ~l~~~~~~~----------------------------------~e~~~~a~~~L~~VgL~~~~~~~P-----~qLSGGMr 136 (248)
T COG1116 96 GLELRGKSK----------------------------------AEARERAKELLELVGLAGFEDKYP-----HQLSGGMR 136 (248)
T ss_pred hhhccccch----------------------------------HhHHHHHHHHHHHcCCcchhhcCc-----cccChHHH
Confidence 977654211 112335778999999999888665 46999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHH----HHHHcCCeEEEEEecChhHHHhhcCeEEEEeC--CEEE
Q 044321 317 KRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQ----FIHILEGTILISLLQPAPETYDLFDDIILISN--GHIV 387 (521)
Q Consensus 317 QRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~----l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~--G~iv 387 (521)
|||+|||||+.+|++|+||||++++|......|++ +.++ .+.+++.+||+.+|+..++|||++|.+ |+|.
T Consensus 137 QRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~-~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 137 QRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEE-TRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHh-hCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 99999999999999999999999877766555554 4443 345666678999999999999999998 4453
No 17
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.4e-40 Score=316.46 Aligned_cols=192 Identities=24% Similarity=0.312 Sum_probs=154.9
Q ss_pred CCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCcccc
Q 044321 168 KKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHI 225 (521)
Q Consensus 168 ~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~ 225 (521)
.+.+.||+||||+|++||+++|+||||||||||||+|.|++.|+.+ .-++++|+..+|
T Consensus 18 fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALF 97 (263)
T COG1127 18 FGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALF 97 (263)
T ss_pred cCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccc
Confidence 3567899999999999999999999999999999999999998742 128899999999
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcc-cccccc
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVC-ADTMVG 304 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~-~dt~vg 304 (521)
..+||+||+.|..+-+.- + .....+..+..-|+.+||... ++.
T Consensus 98 ssltV~eNVafplre~~~---------l------------------------p~~~i~~lv~~KL~~VGL~~~~~~~--- 141 (263)
T COG1127 98 SSLTVFENVAFPLREHTK---------L------------------------PESLIRELVLMKLELVGLRGAAADL--- 141 (263)
T ss_pred cccchhHhhheehHhhcc---------C------------------------CHHHHHHHHHHHHHhcCCChhhhhh---
Confidence 999999999997653221 0 011223345556889999875 554
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
++.+|||||+||++|||||+.+|++||+||||+++|+.....+.+++..+ =+.|++++||+.++++.+||+|++|
T Consensus 142 --~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L 219 (263)
T COG1127 142 --YPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVL 219 (263)
T ss_pred --CchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEE
Confidence 45569999999999999999999999999999998875555444444333 1445555678999999999999999
Q ss_pred eCCEEEEecCHhHHHH
Q 044321 382 SNGHIVYQGPREYVLE 397 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~~ 397 (521)
.+|+|+++|+++++.+
T Consensus 220 ~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 220 ADGKVIAEGTPEELLA 235 (263)
T ss_pred eCCEEEEeCCHHHHHh
Confidence 9999999999999854
No 18
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=6.8e-40 Score=333.62 Aligned_cols=198 Identities=29% Similarity=0.398 Sum_probs=165.4
Q ss_pred cCCCC-cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCcccc
Q 044321 165 PSRKK-HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHI 225 (521)
Q Consensus 165 ~~~~~-~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~ 225 (521)
.+.++ .+.+|+||||+|++|++++|+||||||||||||+|+|++.|+.+ ..+|++|++.++
T Consensus 11 ~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~ 90 (293)
T COG1131 11 TKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLY 90 (293)
T ss_pred EEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCC
Confidence 33445 57899999999999999999999999999999999999988631 138999999999
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccC
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGD 305 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 305 (521)
+.+||+|++.|.+.+.+.... .....++++++.+||.+..++++
T Consensus 91 ~~lT~~e~l~~~~~l~~~~~~----------------------------------~~~~~~~~~l~~~~L~~~~~~~~-- 134 (293)
T COG1131 91 PELTVRENLEFFARLYGLSKE----------------------------------EAEERIEELLELFGLEDKANKKV-- 134 (293)
T ss_pred ccccHHHHHHHHHHHhCCChh----------------------------------HHHHHHHHHHHHcCCchhhCcch--
Confidence 999999999999888764310 11235678999999998555544
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
++||+||||||+||.||+++|++|||||||+++|......+.++++.+ ++++|++++|...++..+||+|++|+
T Consensus 135 ---~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~ 211 (293)
T COG1131 135 ---RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILN 211 (293)
T ss_pred ---hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEe
Confidence 569999999999999999999999999999998887766666665543 33677778888999999999999999
Q ss_pred CCEEEEecCHhHHHHHHHH
Q 044321 383 NGHIVYQGPREYVLEFFKF 401 (521)
Q Consensus 383 ~G~iv~~G~~~~v~~~f~~ 401 (521)
+|++++.|+.+++...+..
T Consensus 212 ~G~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 212 DGKIIAEGTPEELKEKFGG 230 (293)
T ss_pred CCEEEEeCCHHHHHHhhcc
Confidence 9999999999998766543
No 19
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=5.4e-40 Score=324.34 Aligned_cols=190 Identities=31% Similarity=0.394 Sum_probs=156.2
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV 230 (521)
++.||+||||+|++|++++|+||||||||||||+|+|+++|..+ .-+|++|.....+.+||
T Consensus 14 ~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV 93 (258)
T COG1120 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTV 93 (258)
T ss_pred CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEE
Confidence 45799999999999999999999999999999999999987532 22899999888889999
Q ss_pred HHHHHHHHHhc-cCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCC
Q 044321 231 RETLAFSARCQ-GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILR 309 (521)
Q Consensus 231 ~E~l~f~~~~~-~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 309 (521)
+|.+.++..-. +... . ...+....++..|+.+|+.+.+++.+.+
T Consensus 94 ~d~V~~GR~p~~~~~~-------------------~------------~~~~D~~~v~~aL~~~~~~~la~r~~~~---- 138 (258)
T COG1120 94 YELVLLGRYPHLGLFG-------------------R------------PSKEDEEIVEEALELLGLEHLADRPVDE---- 138 (258)
T ss_pred eehHhhcCCccccccc-------------------C------------CCHhHHHHHHHHHHHhCcHHHhcCcccc----
Confidence 99998874321 1100 0 0111223577889999999999988764
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHH----HHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTF----QIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~----~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
|||||||||.|||||+++|++|||||||+.+|. ++++.++++.++. +.++|++.|+...+..+||++++|++|+
T Consensus 139 -LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~-~~tvv~vlHDlN~A~ryad~~i~lk~G~ 216 (258)
T COG1120 139 -LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREK-GLTVVMVLHDLNLAARYADHLILLKDGK 216 (258)
T ss_pred -cChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEECCe
Confidence 999999999999999999999999999997654 6777777776543 4555556788899999999999999999
Q ss_pred EEEecCHhHHH
Q 044321 386 IVYQGPREYVL 396 (521)
Q Consensus 386 iv~~G~~~~v~ 396 (521)
++++|++++++
T Consensus 217 i~a~G~p~evl 227 (258)
T COG1120 217 IVAQGTPEEVL 227 (258)
T ss_pred EEeecCcchhc
Confidence 99999998875
No 20
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.7e-40 Score=307.61 Aligned_cols=194 Identities=28% Similarity=0.330 Sum_probs=163.0
Q ss_pred cCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCc------------------eeeecCCccccC
Q 044321 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN------------------RCDISQHDVHIG 226 (521)
Q Consensus 165 ~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~------------------~~~v~q~d~~~~ 226 (521)
++++....+++||||+++.|++++|+|||||||||+|++|++++.|+.+. .+.++.+..++.
T Consensus 9 K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~ 88 (245)
T COG4555 9 KSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYA 88 (245)
T ss_pred hhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhh
Confidence 33334445999999999999999999999999999999999999987431 144455556788
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCc
Q 044321 227 EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDE 306 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 306 (521)
.||++|||.|.+++.+.. + .+.+.+++.+.+.|+|.++.|+.+|+
T Consensus 89 RlT~rEnl~~Fa~L~~l~----------~------------------------~~~kari~~l~k~l~l~~~~~rRv~~- 133 (245)
T COG4555 89 RLTARENLKYFARLNGLS----------R------------------------KEIKARIAELSKRLQLLEYLDRRVGE- 133 (245)
T ss_pred hhhHHHHHHHHHHHhhhh----------h------------------------hHHHHHHHHHHHHhChHHHHHHHHhh-
Confidence 899999999988765432 1 22345678899999999999999986
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
+|.||||||+|||||+++|++++|||||+++|....+.+++.+.+. .+.+++.++|.++++..+||+|++|+.|
T Consensus 134 ----~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~G 209 (245)
T COG4555 134 ----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKG 209 (245)
T ss_pred ----hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecC
Confidence 9999999999999999999999999999999988887777776654 2566777789999999999999999999
Q ss_pred EEEEecCHhHHHH
Q 044321 385 HIVYQGPREYVLE 397 (521)
Q Consensus 385 ~iv~~G~~~~v~~ 397 (521)
++|+.|+++.+.+
T Consensus 210 evv~~gs~~~l~~ 222 (245)
T COG4555 210 EVVLEGSIEALDA 222 (245)
T ss_pred cEEEcCCHHHHHH
Confidence 9999999988753
No 21
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.1e-39 Score=316.04 Aligned_cols=189 Identities=25% Similarity=0.383 Sum_probs=150.6
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------ceeeecCCc--cccCCCCHHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------NRCDISQHD--VHIGEMTVRET 233 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------~~~~v~q~d--~~~~~lTV~E~ 233 (521)
++|+||||+|++|++++|+||||||||||+|+|+|++.|..+ ..+||||.. ..-+.+||+|.
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~ 97 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDV 97 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHH
Confidence 599999999999999999999999999999999999987521 248999964 22345899999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+..+..... .++...+ .+.++.++++|+.+|+.+.+|..+|+ |||
T Consensus 98 V~~g~~~~~-----g~~~~~~-------------------------~~d~~~v~~aL~~Vgm~~~~~r~i~~-----LSG 142 (254)
T COG1121 98 VLLGRYGKK-----GWFRRLN-------------------------KKDKEKVDEALERVGMEDLRDRQIGE-----LSG 142 (254)
T ss_pred HHccCcccc-----ccccccc-------------------------HHHHHHHHHHHHHcCchhhhCCcccc-----cCc
Confidence 887632111 0000000 11234678899999999999999886 999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecC
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQGP 391 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~ 391 (521)
||+|||.|||||+.+|++|+|||||++.|......+.++++++ .+.+|+++||+...+.++||+|++|+ +++++.|+
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~ 221 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGP 221 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccC
Confidence 9999999999999999999999999987766555555554433 26677778899999999999999995 78999999
Q ss_pred HhHHH
Q 044321 392 REYVL 396 (521)
Q Consensus 392 ~~~v~ 396 (521)
++++.
T Consensus 222 ~~~~~ 226 (254)
T COG1121 222 PEEVL 226 (254)
T ss_pred hhhcc
Confidence 99885
No 22
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-39 Score=306.66 Aligned_cols=204 Identities=24% Similarity=0.312 Sum_probs=160.6
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------------ceeeecCCc
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------------NRCDISQHD 222 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------------~~~~v~q~d 222 (521)
+.+.+|+|||+.|+++++|||+|||||||||||++|..+.+.... ..+.|+|.+
T Consensus 18 g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkP 97 (253)
T COG1117 18 GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKP 97 (253)
T ss_pred CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCC
Confidence 456899999999999999999999999999999999997653210 127899999
Q ss_pred cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-cccc
Q 044321 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CADT 301 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt 301 (521)
..|| +|++||+.|+.+.++... . .+ .++++..|+...|-+ ..|.
T Consensus 98 nPFp-~SIydNVayG~r~~g~~~-~-~l--------------------------------deiVe~sLk~AaLWdEVKDr 142 (253)
T COG1117 98 NPFP-MSIYDNVAYGLRLHGIKD-K-EL--------------------------------DEIVESSLKKAALWDEVKDR 142 (253)
T ss_pred CCCC-chHHHHHHHhHHhhccch-H-HH--------------------------------HHHHHHHHHHhHhHHHhHHH
Confidence 9998 999999999999887633 1 11 112222333333321 1111
Q ss_pred cccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEE
Q 044321 302 MVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 302 ~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
. ++...+||||||||++|||||+.+|+|||||||||++|+.....+.+++.++ ..-+||++||.+..+.+..|+..+
T Consensus 143 L--~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taF 220 (253)
T COG1117 143 L--HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAF 220 (253)
T ss_pred h--hCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhh
Confidence 1 1234569999999999999999999999999999998887777777766655 345666778999999999999999
Q ss_pred EeCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHH
Q 044321 381 ISNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQ 417 (521)
Q Consensus 381 L~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~ 417 (521)
+..|++|++|+.+++ |..|..+.+.||+.
T Consensus 221 f~~G~LvE~g~T~~i--------F~~P~~~~TedYis 249 (253)
T COG1117 221 FYLGELVEFGPTDKI--------FTNPKHKRTEDYIS 249 (253)
T ss_pred hcccEEEEEcCHHhh--------hcCccHHHHHHHhc
Confidence 999999999999998 77899988888874
No 23
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2.4e-38 Score=329.98 Aligned_cols=200 Identities=29% Similarity=0.405 Sum_probs=162.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~ 233 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+|+++||.||
T Consensus 17 ~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eN 96 (353)
T TIGR03265 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADN 96 (353)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHH
Confidence 4699999999999999999999999999999999999887531 23899999999999999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+.|+.+..+... .+....++++++.+||.+..++.+. .|||
T Consensus 97 i~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~l~L~~~~~~~~~-----~LSg 137 (353)
T TIGR03265 97 IAYGLKNRGMGR----------------------------------AEVAERVAELLDLVGLPGSERKYPG-----QLSG 137 (353)
T ss_pred HHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCCchhhCChh-----hCCH
Confidence 999865322110 0122356789999999988876664 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||||+|||||+.+|++||||||++++|......+++.+++. .++++|+++|+..++..+||+|++|++|++++.|
T Consensus 138 Gq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g 217 (353)
T TIGR03265 138 GQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVG 217 (353)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999999999999998877766666655432 2456666788889999999999999999999999
Q ss_pred CHhHHHHHHHHcCCCCCCCCCHHHHHH
Q 044321 391 PREYVLEFFKFMGFECPKRKGVADFLQ 417 (521)
Q Consensus 391 ~~~~v~~~f~~~g~~~p~~~~~adfl~ 417 (521)
+++++. ..|....++.|+.
T Consensus 218 ~~~~~~--------~~p~~~~~a~~~g 236 (353)
T TIGR03265 218 TPQEIY--------RHPATPFVADFVG 236 (353)
T ss_pred CHHHHH--------hCCCCHHHHHhcC
Confidence 999884 3455555555553
No 24
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-38 Score=328.86 Aligned_cols=200 Identities=25% Similarity=0.372 Sum_probs=163.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~ 233 (521)
+.+|+||||+|++||+++|+|||||||||||++|+|+++|+.+ ..+|++|+..+|+++||.||
T Consensus 19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eN 98 (351)
T PRK11432 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGEN 98 (351)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHH
Confidence 4699999999999999999999999999999999999987632 23799999999999999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+.|+.+..+... .+....++++++.+||.+..+.++. .|||
T Consensus 99 i~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gl~~~~~r~~~-----~LSg 139 (351)
T PRK11432 99 VGYGLKMLGVPK----------------------------------EERKQRVKEALELVDLAGFEDRYVD-----QISG 139 (351)
T ss_pred HHHHHhHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCChh-----hCCH
Confidence 999865432210 1122356778999999887776654 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||||+|||||+.+|++||||||++++|....+.+++.++.. .++++++++|+..++..+||+|++|++|+++..|
T Consensus 140 Gq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g 219 (351)
T PRK11432 140 GQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIG 219 (351)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999999999999988887777766655432 2456677788999999999999999999999999
Q ss_pred CHhHHHHHHHHcCCCCCCCCCHHHHHH
Q 044321 391 PREYVLEFFKFMGFECPKRKGVADFLQ 417 (521)
Q Consensus 391 ~~~~v~~~f~~~g~~~p~~~~~adfl~ 417 (521)
+++++. ..|....++.|+.
T Consensus 220 ~~~~~~--------~~p~~~~~a~~~g 238 (351)
T PRK11432 220 SPQELY--------RQPASRFMASFMG 238 (351)
T ss_pred CHHHHH--------hCCCchHHHHhcC
Confidence 999883 3465555666653
No 25
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=3.8e-38 Score=329.33 Aligned_cols=187 Identities=23% Similarity=0.335 Sum_probs=156.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC--C-----------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL--K-----------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~--~-----------------~~~~v~q~d~~~~~lTV~ 231 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|++.|+. + ..+|++|+..+|+++||+
T Consensus 18 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~ 97 (362)
T TIGR03258 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVE 97 (362)
T ss_pred eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHH
Confidence 469999999999999999999999999999999999988764 2 137899999999999999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGI 311 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~L 311 (521)
||+.|+.+..+... .+....++++++.+||.+..++.+. .|
T Consensus 98 enl~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~~~~~-----~L 138 (362)
T TIGR03258 98 DNVAFGLRAQKMPK----------------------------------ADIAERVADALKLVGLGDAAAHLPA-----QL 138 (362)
T ss_pred HHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCCchhhCChh-----hC
Confidence 99999865432210 0122346778999999988887665 59
Q ss_pred ChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc----CCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 312 SGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL----EGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 312 SGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~----~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
||||||||+|||||+.+|++|||||||+++|....+.|++.+.+. ++++++++||+..++..+||+|++|++|+++
T Consensus 139 SgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~ 218 (362)
T TIGR03258 139 SGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLA 218 (362)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999998887666666655432 2567777889999999999999999999999
Q ss_pred EecCHhHHH
Q 044321 388 YQGPREYVL 396 (521)
Q Consensus 388 ~~G~~~~v~ 396 (521)
..|+++++.
T Consensus 219 ~~g~~~~~~ 227 (362)
T TIGR03258 219 AHGEPQALY 227 (362)
T ss_pred EEcCHHHHH
Confidence 999999884
No 26
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.4e-39 Score=306.56 Aligned_cols=196 Identities=24% Similarity=0.291 Sum_probs=157.3
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccccC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHIG 226 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~~ 226 (521)
+++++|+||||+|++||+++|+|||||||||||++|+|+.+++.+ ..++|+|+..+.+
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~ 94 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVP 94 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCccc
Confidence 566899999999999999999999999999999999999887632 1289999999999
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCc
Q 044321 227 EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDE 306 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 306 (521)
.++|.+|+..+..-+. .....+ .++. ..+.+..+-+.|+.+|+.+.+-++.+.
T Consensus 95 r~sv~~NVl~grl~~~-s~~~sl----------fglf---------------sk~dk~~Al~aLervgi~~~A~qra~~- 147 (258)
T COG3638 95 RLSVLENVLLGRLGYT-STWRSL----------FGLF---------------SKEDKAQALDALERVGILDKAYQRAST- 147 (258)
T ss_pred ccHHHHHHHhhhcccc-hHHHHH----------hCCC---------------CHHHHHHHHHHHHHcCcHHHHHHHhcc-
Confidence 9999999987643211 110001 1111 112233455689999999988888765
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHH----HHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTF----QIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~----~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
|||||+|||+|||||+.+|++||.|||++++|+ ++++.|+++.++.+.|+|+. .|..+.+.++||||+-|+
T Consensus 148 ----LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~n-LH~vdlA~~Y~~Riigl~ 222 (258)
T COG3638 148 ----LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVN-LHQVDLAKKYADRIIGLK 222 (258)
T ss_pred ----CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEE-echHHHHHHHHhhheEec
Confidence 999999999999999999999999999997654 67788888776655555554 567788999999999999
Q ss_pred CCEEEEecCHhHHH
Q 044321 383 NGHIVYQGPREYVL 396 (521)
Q Consensus 383 ~G~iv~~G~~~~v~ 396 (521)
+|+|+|.||++++-
T Consensus 223 ~G~ivfDg~~~el~ 236 (258)
T COG3638 223 AGRIVFDGPASELT 236 (258)
T ss_pred CCcEEEeCChhhhh
Confidence 99999999998864
No 27
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=6e-38 Score=325.42 Aligned_cols=187 Identities=21% Similarity=0.282 Sum_probs=154.1
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~~~l 228 (521)
..+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+..+++.+
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~ 97 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSR 97 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccC
Confidence 4699999999999999999999999999999999999887521 238899998899999
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
||.||+.|.....+... .+....+.++++.+||.+..|.+++
T Consensus 98 tv~eni~~~~~~~~~~~----------------------------------~~~~~~v~e~l~~vgL~~~~~~~~~---- 139 (343)
T TIGR02314 98 TVFGNVALPLELDNTPK----------------------------------DEIKRKVTELLALVGLGDKHDSYPS---- 139 (343)
T ss_pred cHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCChh----
Confidence 99999998754322110 0122345678999999988876664
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
.|||||||||+|||||+.+|++|||||||+++|....+.+.+++++. .+.+||+++|+++.+.++||+|++|++|+
T Consensus 140 -~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~ 218 (343)
T TIGR02314 140 -NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGE 218 (343)
T ss_pred -hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 59999999999999999999999999999988877666665555443 24566667888899999999999999999
Q ss_pred EEEecCHhHHH
Q 044321 386 IVYQGPREYVL 396 (521)
Q Consensus 386 iv~~G~~~~v~ 396 (521)
+++.|++++++
T Consensus 219 iv~~g~~~~v~ 229 (343)
T TIGR02314 219 LIEQGTVSEIF 229 (343)
T ss_pred EEEEcCHHHHH
Confidence 99999998873
No 28
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-38 Score=329.93 Aligned_cols=187 Identities=24% Similarity=0.319 Sum_probs=155.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~ 233 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+|+++||+||
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eN 96 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVREN 96 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHH
Confidence 4699999999999999999999999999999999999887531 23899999999999999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+.|+.+..+... .+....++++++.+||.+..+..+. .|||
T Consensus 97 i~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSg 137 (356)
T PRK11650 97 MAYGLKIRGMPK----------------------------------AEIEERVAEAARILELEPLLDRKPR-----ELSG 137 (356)
T ss_pred HHhHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhhCChh-----hCCH
Confidence 999865322110 0112346778999999988877665 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||||+|||||+.+|++|||||||+++|....+.|.+.+.+. .++++|+++|+..++..+||+|++|++|+++..|
T Consensus 138 Gq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g 217 (356)
T PRK11650 138 GQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIG 217 (356)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEEC
Confidence 9999999999999999999999999998877666665554432 2566677788889999999999999999999999
Q ss_pred CHhHHH
Q 044321 391 PREYVL 396 (521)
Q Consensus 391 ~~~~v~ 396 (521)
+++++.
T Consensus 218 ~~~~~~ 223 (356)
T PRK11650 218 TPVEVY 223 (356)
T ss_pred CHHHHH
Confidence 999884
No 29
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=7.7e-38 Score=328.24 Aligned_cols=200 Identities=25% Similarity=0.365 Sum_probs=164.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~ 233 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+|+++||.||
T Consensus 27 ~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eN 106 (375)
T PRK09452 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFEN 106 (375)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHH
Confidence 4699999999999999999999999999999999999887521 23899999999999999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+.|+.+..+... .+....++++++.+||.+..++++. .|||
T Consensus 107 i~~~l~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~p~-----~LSg 147 (375)
T PRK09452 107 VAFGLRMQKTPA----------------------------------AEITPRVMEALRMVQLEEFAQRKPH-----QLSG 147 (375)
T ss_pred HHHHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCChh-----hCCH
Confidence 999764322110 0112346778999999988877664 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||||+|||||+.+|++||||||++++|......|++.+... .++++|++||+..++..++|+|++|++|+++..|
T Consensus 148 Gq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g 227 (375)
T PRK09452 148 GQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDG 227 (375)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999999999999988877766666655432 2566677789999999999999999999999999
Q ss_pred CHhHHHHHHHHcCCCCCCCCCHHHHHH
Q 044321 391 PREYVLEFFKFMGFECPKRKGVADFLQ 417 (521)
Q Consensus 391 ~~~~v~~~f~~~g~~~p~~~~~adfl~ 417 (521)
+++++ |..|....+++|+.
T Consensus 228 ~~~~i--------~~~p~~~~~a~~~g 246 (375)
T PRK09452 228 TPREI--------YEEPKNLFVARFIG 246 (375)
T ss_pred CHHHH--------HhCcccHHHHHhcC
Confidence 99988 34666666677664
No 30
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=8.1e-38 Score=303.30 Aligned_cols=175 Identities=25% Similarity=0.349 Sum_probs=141.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCc-----------------------eeeecCCccccCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN-----------------------RCDISQHDVHIGE 227 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~-----------------------~~~v~q~d~~~~~ 227 (521)
..+|++|||+|++||+++|+|||||||||||++|+|+..|+.+. .+||+|+..+++.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ 97 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPD 97 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCC
Confidence 57999999999999999999999999999999999999886321 2899999999999
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccc-ccccCc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCAD-TMVGDE 306 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~d-t~vg~~ 306 (521)
+||.||+.+.....+.... ......+.+++.+||.+..+ .++.
T Consensus 98 ltv~ENv~lpl~~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~~~~p~-- 141 (226)
T COG1136 98 LTVLENVELPLLIAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLLKKKPS-- 141 (226)
T ss_pred CCHHHHHHhHHHHcCCChh----------------------------------HHHHHHHHHHHhcCChhhhccCCch--
Confidence 9999999987665443210 11234567899999987665 5554
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHH----HHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTF----QIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~----~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
.|||||||||+|||||+.+|++||.||||.++|. .+++.|+++.++. +++++++||+ +.+..+|||++.|.
T Consensus 142 ---eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~-g~tii~VTHd-~~lA~~~dr~i~l~ 216 (226)
T COG1136 142 ---ELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKER-GKTIIMVTHD-PELAKYADRVIELK 216 (226)
T ss_pred ---hcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhc-CCEEEEEcCC-HHHHHhCCEEEEEe
Confidence 5999999999999999999999999999997655 4566666655443 5555666676 46778999999999
Q ss_pred CCEE
Q 044321 383 NGHI 386 (521)
Q Consensus 383 ~G~i 386 (521)
+|++
T Consensus 217 dG~~ 220 (226)
T COG1136 217 DGKI 220 (226)
T ss_pred CCee
Confidence 9994
No 31
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.3e-37 Score=318.98 Aligned_cols=188 Identities=26% Similarity=0.326 Sum_probs=159.1
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV~E 232 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|++.|+.+ ..+|++|+..+++.+||+|
T Consensus 20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e 99 (306)
T PRK13537 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRE 99 (306)
T ss_pred eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHH
Confidence 4699999999999999999999999999999999999887632 2389999988889999999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.|.+...+... .+....++.+++.++|.+..++.++ +||
T Consensus 100 ~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 140 (306)
T PRK13537 100 NLLVFGRYFGLSA----------------------------------AAARALVPPLLEFAKLENKADAKVG-----ELS 140 (306)
T ss_pred HHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCchh-----hCC
Confidence 9998655433210 0111245678899999988888775 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
|||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++|++++|+..++.++||+|++|++|++++.|
T Consensus 141 ~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g 220 (306)
T PRK13537 141 GGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEG 220 (306)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999998888777777654 3567777889999999999999999999999999
Q ss_pred CHhHHHH
Q 044321 391 PREYVLE 397 (521)
Q Consensus 391 ~~~~v~~ 397 (521)
+++++..
T Consensus 221 ~~~~l~~ 227 (306)
T PRK13537 221 APHALIE 227 (306)
T ss_pred CHHHHHh
Confidence 9998864
No 32
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=9.4e-38 Score=348.36 Aligned_cols=238 Identities=26% Similarity=0.349 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCC--ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLP--TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSL 161 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~ 161 (521)
.++.+...+|+.++++.++|.-. +..-...| ..+|+|+|++|.+..
T Consensus 436 ~q~~~~~~~rL~dil~~~~E~~~-------~~~~~~~~~~~g~I~~~nvsf~y~~------------------------- 483 (709)
T COG2274 436 FQQAKVALERLGDILDTPPEQEG-------DKTLIHLPKLQGEIEFENVSFRYGP------------------------- 483 (709)
T ss_pred HHHHHHHHHHHHHHhcCCccccc-------ccccccccccCceEEEEEEEEEeCC-------------------------
Confidence 78889999999999999988421 11012233 348999999999731
Q ss_pred ccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCc
Q 044321 162 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHD 222 (521)
Q Consensus 162 ~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d 222 (521)
....+|+|+|++|+|||.+||+|+||||||||+|+|+|++.|..+ ..+||+|++
T Consensus 484 -------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~ 556 (709)
T COG2274 484 -------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDP 556 (709)
T ss_pred -------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccc
Confidence 112699999999999999999999999999999999999998642 128899976
Q ss_pred cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccc
Q 044321 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTM 302 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 302 (521)
. ++..|++||+.++ .|+.+.+..+.++...+ ..+.+. .++..++|.
T Consensus 557 ~-Lf~gSI~eNi~l~-------------------------~p~~~~e~i~~A~~~ag-----~~~fI~---~lP~gy~t~ 602 (709)
T COG2274 557 F-LFSGSIRENIALG-------------------------NPEATDEEIIEAAQLAG-----AHEFIE---NLPMGYDTP 602 (709)
T ss_pred h-hhcCcHHHHHhcC-------------------------CCCCCHHHHHHHHHHhC-----cHHHHH---hcccccccc
Confidence 5 5578999999986 24444555555555443 334443 489999999
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEE
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
+|+ ++.+||||||||++|||||+.+|+||+||||||++|.+..+.+.+.+.+. ++|+|+++|+ ..+.+.||+|+|
T Consensus 603 v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHR--l~ti~~adrIiV 679 (709)
T COG2274 603 VGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHR--LSTIRSADRIIV 679 (709)
T ss_pred ccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEcc--chHhhhccEEEE
Confidence 996 67789999999999999999999999999999998887776666655544 3677666655 357889999999
Q ss_pred EeCCEEEEecCHhHHHH
Q 044321 381 ISNGHIVYQGPREYVLE 397 (521)
Q Consensus 381 L~~G~iv~~G~~~~v~~ 397 (521)
|++|+|+.+|+++++++
T Consensus 680 l~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 680 LDQGKIVEQGSHEELLA 696 (709)
T ss_pred ccCCceeccCCHHHHHH
Confidence 99999999999999975
No 33
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.1e-38 Score=338.81 Aligned_cols=237 Identities=22% Similarity=0.328 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCC---ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhh
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLP---TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNS 160 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~ 160 (521)
.++...+.+|+++.+|..|. ++..|...| +..|+|+|++|.|..
T Consensus 431 lmkgvGAs~rvFel~dr~P~---------i~~~G~~~p~~~~G~IeF~~VsFaYP~------------------------ 477 (716)
T KOG0058|consen 431 LMKGVGASERVFELMDRKPR---------IPLTGTLAPDHLQGVIEFEDVSFAYPT------------------------ 477 (716)
T ss_pred HHHhcchHHHHHHHhccCCC---------CCCCCccccccccceEEEEEeeeecCC------------------------
Confidence 56667788999999998885 233366555 358999999999732
Q ss_pred cccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCC
Q 044321 161 LNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQH 221 (521)
Q Consensus 161 ~~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~ 221 (521)
..+..||+|+||+|+|||+|||+||||+||||+.++|-.+++|+.+ ..++|.|+
T Consensus 478 -------Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QE 550 (716)
T KOG0058|consen 478 -------RPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQE 550 (716)
T ss_pred -------CCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeecc
Confidence 2345799999999999999999999999999999999999999742 12889999
Q ss_pred ccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccc
Q 044321 222 DVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADT 301 (521)
Q Consensus 222 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 301 (521)
+++| .-||+|||.|+.. ..+.+.++.++..+ ...+++. ++++.+||
T Consensus 551 PvLF-s~sI~eNI~YG~~-------------------------~~t~e~i~~AAk~A-----Nah~FI~---~~p~gY~T 596 (716)
T KOG0058|consen 551 PVLF-SGSIRENIAYGLD-------------------------NATDEEIEAAAKMA-----NAHEFIT---NFPDGYNT 596 (716)
T ss_pred ceee-cccHHHHHhcCCC-------------------------CCCHHHHHHHHHHh-----ChHHHHH---hCcccccc
Confidence 8876 5799999999743 12223333333222 1344543 59999999
Q ss_pred cccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEE
Q 044321 302 MVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 302 ~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
.||+ .+..||||||||++|||||+++|.||||||.||++|.+.-..+++.+.+. +.|++++. |. -.+.+.+|+|+
T Consensus 597 ~VGE-kG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIA-HR-LSTV~~Ad~Iv 673 (716)
T KOG0058|consen 597 VVGE-KGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIA-HR-LSTVRHADQIV 673 (716)
T ss_pred ccCC-ccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEe-hh-hhHhhhccEEE
Confidence 9997 44579999999999999999999999999999998887777776666432 45666654 44 46778999999
Q ss_pred EEeCCEEEEecCHhHHHH
Q 044321 380 LISNGHIVYQGPREYVLE 397 (521)
Q Consensus 380 vL~~G~iv~~G~~~~v~~ 397 (521)
++++|++++.|+++++++
T Consensus 674 vi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 674 VIDKGRVVEMGTHDELLS 691 (716)
T ss_pred EEcCCeEEecccHHHHhh
Confidence 999999999999999864
No 34
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=3.2e-37 Score=321.62 Aligned_cols=204 Identities=28% Similarity=0.378 Sum_probs=161.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~ 233 (521)
+.+|+||||+|++||+++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+||.||
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~en 94 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDN 94 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHH
Confidence 4699999999999999999999999999999999999887521 23799999999999999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+.|+......... .. ..+....++++++.+||.+..++++. .|||
T Consensus 95 i~~~~~~~~~~~~-------------------~~-----------~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSg 139 (353)
T PRK10851 95 IAFGLTVLPRRER-------------------PN-----------AAAIKAKVTQLLEMVQLAHLADRYPA-----QLSG 139 (353)
T ss_pred HHhhhhhcccccC-------------------CC-----------HHHHHHHHHHHHHHcCCchhhhCChh-----hCCH
Confidence 9987543110000 00 00122356778999999887776654 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||||+|||||+.+|++|||||||+++|....+.+.+++.+. .++++++++|+..++..+||+|++|++|++++.|
T Consensus 140 Gq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g 219 (353)
T PRK10851 140 GQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAG 219 (353)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999999999999988887766666655433 2556777789999999999999999999999999
Q ss_pred CHhHHHHHHHHcCCCCCCCCCHHHHHH
Q 044321 391 PREYVLEFFKFMGFECPKRKGVADFLQ 417 (521)
Q Consensus 391 ~~~~v~~~f~~~g~~~p~~~~~adfl~ 417 (521)
+++++. ..|....++.|+.
T Consensus 220 ~~~~i~--------~~p~~~~~~~~~g 238 (353)
T PRK10851 220 TPDQVW--------REPATRFVLEFMG 238 (353)
T ss_pred CHHHHH--------hCccchHHHHhcC
Confidence 999884 3455555555543
No 35
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-37 Score=323.85 Aligned_cols=199 Identities=24% Similarity=0.323 Sum_probs=161.4
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~ 233 (521)
..+|+|+||+|++|++++|+|||||||||||++|+|+.+|+.+ ..+|++|+..+|+++||.||
T Consensus 32 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eN 111 (377)
T PRK11607 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQN 111 (377)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHH
Confidence 4699999999999999999999999999999999999887531 23799999999999999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+.|+.+..+... .+....+.++++.+||.+..++.+. +|||
T Consensus 112 i~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~l~L~~~~~~~~~-----~LSg 152 (377)
T PRK11607 112 IAFGLKQDKLPK----------------------------------AEIASRVNEMLGLVHMQEFAKRKPH-----QLSG 152 (377)
T ss_pred HHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCChh-----hCCH
Confidence 999765332110 0122346778999999887776654 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHH----HHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQ----FIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~----l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
||||||+|||||+.+|++||||||++++|....+.|++ +.++. ++++|++||+..++..++|+|++|++|+++..
T Consensus 153 Gq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~laDri~vl~~G~i~~~ 231 (377)
T PRK11607 153 GQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERV-GVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQI 231 (377)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEE
Confidence 99999999999999999999999999988877766654 43333 45666678889999999999999999999999
Q ss_pred cCHhHHHHHHHHcCCCCCCCCCHHHHHH
Q 044321 390 GPREYVLEFFKFMGFECPKRKGVADFLQ 417 (521)
Q Consensus 390 G~~~~v~~~f~~~g~~~p~~~~~adfl~ 417 (521)
|+++++. ..|....++.|+.
T Consensus 232 g~~~~~~--------~~p~~~~~a~~~g 251 (377)
T PRK11607 232 GEPEEIY--------EHPTTRYSAEFIG 251 (377)
T ss_pred cCHHHHH--------hCCccHHHHHhcC
Confidence 9999884 3455555566553
No 36
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-37 Score=323.00 Aligned_cols=187 Identities=25% Similarity=0.356 Sum_probs=154.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~ 233 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+||+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~en 95 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAEN 95 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHH
Confidence 4699999999999999999999999999999999999877521 23789999889999999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+.|+....+... .+....++++++.+||.+..++.++ .|||
T Consensus 96 i~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~lgL~~~~~~~~~-----~LSg 136 (369)
T PRK11000 96 MSFGLKLAGAKK----------------------------------EEINQRVNQVAEVLQLAHLLDRKPK-----ALSG 136 (369)
T ss_pred HHhHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcCChh-----hCCH
Confidence 998754322110 0112245678999999887777665 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||||+|||||+.+|++|||||||+++|....+.+.+++++. .++++|+++|+..++..+||+|++|++|+++..|
T Consensus 137 Gq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g 216 (369)
T PRK11000 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216 (369)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999999999999998887776665555432 2556677788888999999999999999999999
Q ss_pred CHhHHH
Q 044321 391 PREYVL 396 (521)
Q Consensus 391 ~~~~v~ 396 (521)
+++++.
T Consensus 217 ~~~~i~ 222 (369)
T PRK11000 217 KPLELY 222 (369)
T ss_pred CHHHHH
Confidence 999884
No 37
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-38 Score=304.67 Aligned_cols=205 Identities=26% Similarity=0.356 Sum_probs=163.1
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCcc
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDV 223 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~ 223 (521)
+.++.+..++++||||+|++||+++|+||||||||||+|+|+|.++|+.+ +.+-.+|...
T Consensus 10 l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~r 89 (250)
T COG0411 10 LSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITR 89 (250)
T ss_pred ceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeeccccc
Confidence 45667888999999999999999999999999999999999999999732 1145688888
Q ss_pred ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccc
Q 044321 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMV 303 (521)
Q Consensus 224 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 303 (521)
.|++|||.||+..+...+.. .. ..+ + .+.. ..+..+..+.+..+|+.+||.+.+|+..
T Consensus 90 lF~~lTVlENv~va~~~~~~---~~--~~l-------~-~~~~---------~~~e~~~~e~A~~~Le~vgL~~~a~~~A 147 (250)
T COG0411 90 LFPGLTVLENVAVGAHARLG---LS--GLL-------G-RPRA---------RKEEREARERARELLEFVGLGELADRPA 147 (250)
T ss_pred ccCCCcHHHHHHHHhhhhhh---hh--hhh-------c-cccc---------hhhHHHHHHHHHHHHHHcCCchhhcchh
Confidence 99999999999988654321 00 000 0 0000 0011223446678999999999999998
Q ss_pred cCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHH----HHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEE
Q 044321 304 GDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQ----IVNSLRQFIHILEGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 304 g~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~----i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
|+ ||+||||||.|||||+.+|++|+||||.+++... +.+.|+++.+ .++++|+++.|++..++.+||+|+
T Consensus 148 ~~-----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~-~~g~tillIEHdM~~Vm~l~dri~ 221 (250)
T COG0411 148 GN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRD-RGGVTILLIEHDMKLVMGLADRIV 221 (250)
T ss_pred hc-----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEEeccHHHhhhccEEE
Confidence 86 9999999999999999999999999999976554 4445555433 245788888999999999999999
Q ss_pred EEeCCEEEEecCHhHHH
Q 044321 380 LISNGHIVYQGPREYVL 396 (521)
Q Consensus 380 vL~~G~iv~~G~~~~v~ 396 (521)
||+.|+++++|+|+++.
T Consensus 222 Vl~~G~~IAeG~P~eV~ 238 (250)
T COG0411 222 VLNYGEVIAEGTPEEVR 238 (250)
T ss_pred eccCCcCcccCCHHHHh
Confidence 99999999999999985
No 38
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.2e-37 Score=301.48 Aligned_cols=187 Identities=27% Similarity=0.339 Sum_probs=150.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~~~l 228 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSL 92 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCC
Confidence 4699999999999999999999999999999999999876421 126889988888889
Q ss_pred CHHHHHHHHHHhcc-CchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCcc
Q 044321 229 TVRETLAFSARCQG-VGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI 307 (521)
Q Consensus 229 TV~E~l~f~~~~~~-~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 307 (521)
||.||+.+...... ... .+....+..+++.+||.+..++.++
T Consensus 93 tv~~~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 135 (235)
T cd03261 93 TVFENVAFPLREHTRLSE----------------------------------EEIREIVLEKLEAVGLRGAEDLYPA--- 135 (235)
T ss_pred cHHHHHHHHHhhccCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCChh---
Confidence 99999988643210 000 0011235668899999877776665
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++|++++|+.+++..+||+|++|++|
T Consensus 136 --~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G 213 (235)
T cd03261 136 --ELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDG 213 (235)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECC
Confidence 59999999999999999999999999999998887776666665443 2456667778888899999999999999
Q ss_pred EEEEecCHhHHH
Q 044321 385 HIVYQGPREYVL 396 (521)
Q Consensus 385 ~iv~~G~~~~v~ 396 (521)
++++.|+++++.
T Consensus 214 ~i~~~g~~~~~~ 225 (235)
T cd03261 214 KIVAEGTPEELR 225 (235)
T ss_pred eEEEecCHHHHc
Confidence 999999988763
No 39
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=3.8e-37 Score=321.34 Aligned_cols=190 Identities=21% Similarity=0.260 Sum_probs=158.9
Q ss_pred CCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCccc
Q 044321 168 KKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDVH 224 (521)
Q Consensus 168 ~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~~ 224 (521)
++.+.+|+|+||+|++||+++|+|||||||||||++|+|+++|+.+ ..+|++|+..+
T Consensus 3 ~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 3 TGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred cCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 3456799999999999999999999999999999999999987521 24899999999
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++++||+||+.|.....+... .+....+.++++.+||.+..+++++
T Consensus 83 ~~~~TV~eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~vgL~~~~~~~p~ 128 (363)
T TIGR01186 83 FPHMTILQNTSLGPELLGWPE----------------------------------QERKEKALELLKLVGLEEYEHRYPD 128 (363)
T ss_pred CCCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCchhhhCChh
Confidence 999999999999765433211 0112346778999999887777665
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
.|||||||||+|||||+.+|++|||||||+++|....+.+.+++... .+.+||+++|+..++..+||+|++|
T Consensus 129 -----~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl 203 (363)
T TIGR01186 129 -----ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIM 203 (363)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 59999999999999999999999999999999888877777765433 2456777789999999999999999
Q ss_pred eCCEEEEecCHhHHH
Q 044321 382 SNGHIVYQGPREYVL 396 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~ 396 (521)
++|+++..|+++++.
T Consensus 204 ~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 204 KAGEIVQVGTPDEIL 218 (363)
T ss_pred eCCEEEeeCCHHHHH
Confidence 999999999999874
No 40
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=4.3e-37 Score=314.60 Aligned_cols=191 Identities=26% Similarity=0.349 Sum_probs=158.6
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCH
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV 230 (521)
+.+.+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+..+++.+||
T Consensus 4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 83 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTG 83 (302)
T ss_pred CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcH
Confidence 345799999999999999999999999999999999999887531 13789999888999999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
+||+.|.+...+... .+....++++++.+||.+..++.++ .
T Consensus 84 ~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 124 (302)
T TIGR01188 84 RENLEMMGRLYGLPK----------------------------------DEAEERAEELLELFELGEAADRPVG-----T 124 (302)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhCCchh-----h
Confidence 999988654432210 0011245678999999988887765 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+..++.++||+|++|++|++++
T Consensus 125 LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~ 204 (302)
T TIGR01188 125 YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIA 204 (302)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999988777777766543 35667778889999999999999999999999
Q ss_pred ecCHhHHHHH
Q 044321 389 QGPREYVLEF 398 (521)
Q Consensus 389 ~G~~~~v~~~ 398 (521)
.|+++++..-
T Consensus 205 ~g~~~~l~~~ 214 (302)
T TIGR01188 205 EGTPEELKRR 214 (302)
T ss_pred ECCHHHHHHh
Confidence 9999987653
No 41
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-37 Score=297.06 Aligned_cols=191 Identities=23% Similarity=0.293 Sum_probs=154.1
Q ss_pred CCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCcccc
Q 044321 166 SRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHI 225 (521)
Q Consensus 166 ~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~ 225 (521)
.+++..+||++|||++++||+++|+|||||||||||++|+|+.++..+ +.+||+|....|
T Consensus 11 ~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF 90 (237)
T COG0410 11 AGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIF 90 (237)
T ss_pred ecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccch
Confidence 345667899999999999999999999999999999999999887421 238999999999
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcC-CCcccccccc
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILG-LDVCADTMVG 304 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg-L~~~~dt~vg 304 (521)
+.|||.|||..++...... .. .....+++.+.|= |.+..+++-|
T Consensus 91 ~~LTVeENL~~g~~~~~~~-~~----------------------------------~~~~~e~v~~lFP~Lker~~~~aG 135 (237)
T COG0410 91 PRLTVEENLLLGAYARRDK-EA----------------------------------QERDLEEVYELFPRLKERRNQRAG 135 (237)
T ss_pred hhCcHHHHHhhhhhccccc-cc----------------------------------ccccHHHHHHHChhHHHHhcCccc
Confidence 9999999999875432100 00 0000233444432 4444555555
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
. |||||||.++|||||+.+|++|+|||||.++++.+++.+.+.++++ ++.+|+.+.|+...+.+++|+.++|
T Consensus 136 ~-----LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvl 210 (237)
T COG0410 136 T-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVL 210 (237)
T ss_pred C-----CChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEE
Confidence 4 9999999999999999999999999999999998888887776655 2568888999999999999999999
Q ss_pred eCCEEEEecCHhHHH
Q 044321 382 SNGHIVYQGPREYVL 396 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~ 396 (521)
.+|+|+++|+.+++.
T Consensus 211 e~Griv~~G~~~eL~ 225 (237)
T COG0410 211 ENGRIVLSGTAAELL 225 (237)
T ss_pred eCCEEEEecCHHHHh
Confidence 999999999999885
No 42
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=8.6e-37 Score=316.86 Aligned_cols=189 Identities=23% Similarity=0.323 Sum_probs=158.2
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV~ 231 (521)
.+.+|+||||+|++|++++|+||||||||||+++|+|++.|+.+ ..+|++|+..+++.+||.
T Consensus 53 ~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~ 132 (340)
T PRK13536 53 DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVR 132 (340)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHH
Confidence 45699999999999999999999999999999999999987531 238999998888999999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGI 311 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~L 311 (521)
||+.|.....+... .+....++.+++.+||.+..++.++ .|
T Consensus 133 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~L~~~~~~~~~-----~L 173 (340)
T PRK13536 133 ENLLVFGRYFGMST----------------------------------REIEAVIPSLLEFARLESKADARVS-----DL 173 (340)
T ss_pred HHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhCCChh-----hC
Confidence 99987654332110 0011234568889999988888776 49
Q ss_pred ChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 312 SGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 312 SGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++|++++|+..++.++||+|++|++|++++.
T Consensus 174 S~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~ 253 (340)
T PRK13536 174 SGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAE 253 (340)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999988888777776554 356777788999999999999999999999999
Q ss_pred cCHhHHHH
Q 044321 390 GPREYVLE 397 (521)
Q Consensus 390 G~~~~v~~ 397 (521)
|+++++..
T Consensus 254 g~~~~l~~ 261 (340)
T PRK13536 254 GRPHALID 261 (340)
T ss_pred cCHHHHHh
Confidence 99998864
No 43
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-37 Score=302.07 Aligned_cols=188 Identities=26% Similarity=0.345 Sum_probs=159.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCc-cccCCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHD-VHIGEMT 229 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d-~~~~~lT 229 (521)
..+|+|+|+.|++|+.++|+||||||||||+++|+|++.|..+ ..+||+|++ ..+..-|
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~t 96 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPT 96 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCc
Confidence 5799999999999999999999999999999999999988631 137888885 3567889
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCC
Q 044321 230 VRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILR 309 (521)
Q Consensus 230 V~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 309 (521)
|.+.++|+....++.. +++..+++++|+.+||.+.++..+.
T Consensus 97 V~~evafg~~n~g~~~----------------------------------~e~~~rv~~~l~~vgl~~~~~r~p~----- 137 (235)
T COG1122 97 VEDEVAFGLENLGLPR----------------------------------EEIEERVAEALELVGLEELLDRPPF----- 137 (235)
T ss_pred HHHHHhhchhhcCCCH----------------------------------HHHHHHHHHHHHHcCchhhccCCcc-----
Confidence 9999999987665431 1234567889999999998876654
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.|||||||||+||.+|+.+|++|+|||||+++|....+.+.+++.++ ++.++|+++|+.+.+..+||++++|++|++
T Consensus 138 ~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i 217 (235)
T COG1122 138 NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKI 217 (235)
T ss_pred ccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEE
Confidence 59999999999999999999999999999998887776666666544 356777788999999999999999999999
Q ss_pred EEecCHhHHHH
Q 044321 387 VYQGPREYVLE 397 (521)
Q Consensus 387 v~~G~~~~v~~ 397 (521)
+++|++.++++
T Consensus 218 ~~~g~p~~i~~ 228 (235)
T COG1122 218 LADGDPAEIFN 228 (235)
T ss_pred eecCCHHHHhh
Confidence 99999887754
No 44
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-36 Score=294.18 Aligned_cols=184 Identities=27% Similarity=0.304 Sum_probs=143.9
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCc--------------------eeeecCCc--cccCCCC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN--------------------RCDISQHD--VHIGEMT 229 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~--------------------~~~v~q~d--~~~~~lT 229 (521)
++|+||||+|.+||+++|+|+||||||||.++|+|+..|+.+. .-+|+|++ .+.|..|
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~t 100 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT 100 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchh
Confidence 6999999999999999999999999999999999998876321 13566664 3456677
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcc-ccccccCccC
Q 044321 230 VRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVC-ADTMVGDEIL 308 (521)
Q Consensus 230 V~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~-~dt~vg~~~~ 308 (521)
|++.|.-+.+..+.. +.++.+.++|+.+||+.. ++ +++
T Consensus 101 v~~~l~Epl~~~~~~------------------------------------~~~~~i~~~L~~VgL~~~~l~-----R~P 139 (252)
T COG1124 101 VGRILSEPLRPHGLS------------------------------------KSQQRIAELLDQVGLPPSFLD-----RRP 139 (252)
T ss_pred HHHHHhhhhccCCcc------------------------------------HHHHHHHHHHHHcCCCHHHHh-----cCc
Confidence 777665544332221 112236778999999764 34 345
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHH----HHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTF----QIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~----~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
..|||||+|||+|||||+.+|++||+|||||++|. ++++.|.++.++. +.++++++|+...+..+||||+||++|
T Consensus 140 ~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~-~lt~l~IsHdl~~v~~~cdRi~Vm~~G 218 (252)
T COG1124 140 HELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKER-GLTYLFISHDLALVEHMCDRIAVMDNG 218 (252)
T ss_pred hhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhc-CceEEEEeCcHHHHHHHhhheeeeeCC
Confidence 67999999999999999999999999999996655 5566666655543 455666789999999999999999999
Q ss_pred EEEEecCHhHHHH
Q 044321 385 HIVYQGPREYVLE 397 (521)
Q Consensus 385 ~iv~~G~~~~v~~ 397 (521)
++++.++.+++..
T Consensus 219 ~ivE~~~~~~l~~ 231 (252)
T COG1124 219 QIVEIGPTEELLS 231 (252)
T ss_pred eEEEeechhhhhc
Confidence 9999999999853
No 45
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-36 Score=295.82 Aligned_cols=186 Identities=29% Similarity=0.334 Sum_probs=151.4
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV~E 232 (521)
+.+|+||||+|.+|++++|+||||||||||+++|+|+++|+.+ ..+|++|+..+++.+||++
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 92 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWE 92 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHH
Confidence 4699999999999999999999999999999999999876521 1368899888888899999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.+.....+... .+....++.+++.+||.+..++.++ .||
T Consensus 93 ~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 133 (220)
T cd03265 93 NLYIHARLYGVPG----------------------------------AERRERIDELLDFVGLLEAADRLVK-----TYS 133 (220)
T ss_pred HHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHhhCChh-----hCC
Confidence 9988643322100 0011245678999999877777665 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
|||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .++++++++|+.+++..+||++++|++|++++.
T Consensus 134 ~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~ 213 (220)
T cd03265 134 GGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAE 213 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 99999999999999999999999999999888777776665442 255677778888899999999999999999999
Q ss_pred cCHhHH
Q 044321 390 GPREYV 395 (521)
Q Consensus 390 G~~~~v 395 (521)
|+++++
T Consensus 214 ~~~~~~ 219 (220)
T cd03265 214 GTPEEL 219 (220)
T ss_pred CChHHc
Confidence 987754
No 46
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-36 Score=306.01 Aligned_cols=206 Identities=26% Similarity=0.335 Sum_probs=161.4
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCc-cccCC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHD-VHIGE 227 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d-~~~~~ 227 (521)
.+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|++ ..+..
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 99 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE 99 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc
Confidence 599999999999999999999999999999999999877521 126888875 24445
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDE 306 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~ 306 (521)
.||.+|+.|+....+... .+....+.++++.+||. ...++.+
T Consensus 100 ~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~--- 142 (288)
T PRK13643 100 ETVLKDVAFGPQNFGIPK----------------------------------EKAEKIAAEKLEMVGLADEFWEKSP--- 142 (288)
T ss_pred chHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhccCCc---
Confidence 799999998754322110 01122456788999996 3555544
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
+.|||||||||+||++|+.+|++|||||||+++|....+.+.+++... .+.+|++++|+..++..+||+|++|++|
T Consensus 143 --~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G 220 (288)
T PRK13643 143 --FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKG 220 (288)
T ss_pred --ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 569999999999999999999999999999998888777776665443 3566777788888899999999999999
Q ss_pred EEEEecCHhHHH---HHHHHcCCCCCCCCCHHHHH
Q 044321 385 HIVYQGPREYVL---EFFKFMGFECPKRKGVADFL 416 (521)
Q Consensus 385 ~iv~~G~~~~v~---~~f~~~g~~~p~~~~~adfl 416 (521)
++++.|+++++. ++++..|+.+|....+++.+
T Consensus 221 ~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 221 HIISCGTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred EEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 999999999875 45667788887665554444
No 47
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=2.1e-36 Score=309.63 Aligned_cols=188 Identities=24% Similarity=0.335 Sum_probs=154.1
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV~E 232 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+||.|
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 96 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRE 96 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHH
Confidence 4699999999999999999999999999999999999877521 1378999888888999999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.+.....+... .+....++.+++.+||.+..++.++ .||
T Consensus 97 ~l~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~l~~~~~~~~~-----~LS 137 (303)
T TIGR01288 97 NLLVFGRYFGMST----------------------------------REIEAVIPSLLEFARLESKADVRVA-----LLS 137 (303)
T ss_pred HHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhHhcCchh-----hCC
Confidence 9987543221100 0011234567889999988887765 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
|||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+..++.++||+|++|++|++++.|
T Consensus 138 gG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g 217 (303)
T TIGR01288 138 GGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEG 217 (303)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 99999999999999999999999999999888777777666543 3566777788888999999999999999999999
Q ss_pred CHhHHHH
Q 044321 391 PREYVLE 397 (521)
Q Consensus 391 ~~~~v~~ 397 (521)
+++++..
T Consensus 218 ~~~~~~~ 224 (303)
T TIGR01288 218 RPHALID 224 (303)
T ss_pred CHHHHHh
Confidence 9998754
No 48
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.9e-37 Score=287.13 Aligned_cols=187 Identities=21% Similarity=0.289 Sum_probs=156.5
Q ss_pred CCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCcc
Q 044321 166 SRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDV 223 (521)
Q Consensus 166 ~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~ 223 (521)
.|.....+|+||||+|++||++-|+||||||||||||+|.+...|+.+ ..+.|+|+..
T Consensus 10 ~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~r 89 (223)
T COG2884 10 AYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFR 89 (223)
T ss_pred hcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeecc
Confidence 344456799999999999999999999999999999999999888632 1288999999
Q ss_pred ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccc
Q 044321 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMV 303 (521)
Q Consensus 224 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 303 (521)
+++..||.||++|+.+..|... .+++.++.++|+.+||.+.++..+
T Consensus 90 LL~~~tvyeNVA~pL~v~G~~~----------------------------------~~i~~rV~~~L~~VgL~~k~~~lP 135 (223)
T COG2884 90 LLPDRTVYENVALPLRVIGKPP----------------------------------REIRRRVSEVLDLVGLKHKARALP 135 (223)
T ss_pred ccccchHhhhhhhhhhccCCCH----------------------------------HHHHHHHHHHHHHhccchhhhcCc
Confidence 9999999999999987765422 224456788999999999888665
Q ss_pred cCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 304 GDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 304 g~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
. .|||||||||+||||++.+|++||.||||.++|+.....+.++..+. -+|+|++.||+...+..+--+++.|
T Consensus 136 ~-----~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l 210 (223)
T COG2884 136 S-----QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLAL 210 (223)
T ss_pred c-----ccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEE
Confidence 4 59999999999999999999999999999987776655555555443 3788888899998888888999999
Q ss_pred eCCEEEEecC
Q 044321 382 SNGHIVYQGP 391 (521)
Q Consensus 382 ~~G~iv~~G~ 391 (521)
++|+++....
T Consensus 211 ~~Grl~~d~~ 220 (223)
T COG2884 211 EDGRLVRDES 220 (223)
T ss_pred eCCEEEeccc
Confidence 9999987654
No 49
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=3.2e-36 Score=308.06 Aligned_cols=188 Identities=24% Similarity=0.333 Sum_probs=158.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV~E 232 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|++.|+.+ ..+|++|+..+++.+||.|
T Consensus 15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e 94 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVRE 94 (301)
T ss_pred EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHH
Confidence 4699999999999999999999999999999999999877532 2388999988889999999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.|.+...+... .+....++.+++.+||.+..++.++ .||
T Consensus 95 ~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS 135 (301)
T TIGR03522 95 YLQFIAGIYGMKG----------------------------------QLLKQRVEEMIELVGLRPEQHKKIG-----QLS 135 (301)
T ss_pred HHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCchh-----hCC
Confidence 9998765432210 0011245678999999988887765 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecC
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVYQGP 391 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~ 391 (521)
|||||||+||+||+.+|++|||||||+++|....+.+.++++.. .+++|++++|+.+++.++||+|++|++|++++.|+
T Consensus 136 ~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~ 215 (301)
T TIGR03522 136 KGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKK 215 (301)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999998888888777654 24677778899999999999999999999999999
Q ss_pred HhHHHH
Q 044321 392 REYVLE 397 (521)
Q Consensus 392 ~~~v~~ 397 (521)
.+++..
T Consensus 216 ~~~~~~ 221 (301)
T TIGR03522 216 LDELSA 221 (301)
T ss_pred HHHHHH
Confidence 998854
No 50
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-36 Score=305.46 Aligned_cols=200 Identities=24% Similarity=0.312 Sum_probs=156.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------------ceeeecCCcc-ccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------------NRCDISQHDV-HIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------------~~~~v~q~d~-~~~~l 228 (521)
+.+|+||||+|++||+++|+||||||||||+++|+|+++|+.+ ..+|++|++. .++.+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 99 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE 99 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccc
Confidence 3699999999999999999999999999999999999877521 1278888752 44568
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC--ccccccccCc
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD--VCADTMVGDE 306 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~--~~~dt~vg~~ 306 (521)
||+||+.|.....+... .+....++++++.+||. +..++.+
T Consensus 100 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~~--- 142 (287)
T PRK13637 100 TIEKDIAFGPINLGLSE----------------------------------EEIENRVKRAMNIVGLDYEDYKDKSP--- 142 (287)
T ss_pred cHHHHHHhHHHHCCCCH----------------------------------HHHHHHHHHHHHHcCCCchhhccCCc---
Confidence 99999988643222100 11223457789999996 5556554
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+.|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++|++++|+..++..+||+|++|++
T Consensus 143 --~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~ 220 (287)
T PRK13637 143 --FELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNK 220 (287)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 469999999999999999999999999999998887777776666443 256777778888889999999999999
Q ss_pred CEEEEecCHhHHHH---HHHHcCCCCCCC
Q 044321 384 GHIVYQGPREYVLE---FFKFMGFECPKR 409 (521)
Q Consensus 384 G~iv~~G~~~~v~~---~f~~~g~~~p~~ 409 (521)
|++++.|+++++.+ .+...|+.+|..
T Consensus 221 G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 249 (287)
T PRK13637 221 GKCELQGTPREVFKEVETLESIGLAVPQV 249 (287)
T ss_pred CEEEEECCHHHHHhCHHHHHHcCCCCChH
Confidence 99999999998753 334557766643
No 51
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-36 Score=313.58 Aligned_cols=187 Identities=22% Similarity=0.297 Sum_probs=154.1
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~~~l 228 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+..+++.+
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~ 97 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSR 97 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCC
Confidence 4699999999999999999999999999999999999877521 137889988888899
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
||.||+.|.....+... .+....+..+++.+||.+..++.+.
T Consensus 98 tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~---- 139 (343)
T PRK11153 98 TVFDNVALPLELAGTPK----------------------------------AEIKARVTELLELVGLSDKADRYPA---- 139 (343)
T ss_pred cHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCChh----
Confidence 99999998754322110 0011245678999999887776664
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.+++++. .+++||+++|+..++.++||+|++|++|+
T Consensus 140 -~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~ 218 (343)
T PRK11153 140 -QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGR 218 (343)
T ss_pred -hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 59999999999999999999999999999998887777766665543 25667777888889999999999999999
Q ss_pred EEEecCHhHHH
Q 044321 386 IVYQGPREYVL 396 (521)
Q Consensus 386 iv~~G~~~~v~ 396 (521)
+++.|+++++.
T Consensus 219 i~~~g~~~~~~ 229 (343)
T PRK11153 219 LVEQGTVSEVF 229 (343)
T ss_pred EEEEcCHHHHH
Confidence 99999998874
No 52
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-36 Score=297.07 Aligned_cols=190 Identities=30% Similarity=0.395 Sum_probs=150.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~ 233 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|++.+++.+||.||
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 94 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDN 94 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHH
Confidence 4699999999999999999999999999999999999876421 23788998888888999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+.|.....+.... ... .+....++.+++.+||.+..++.++ .|||
T Consensus 95 l~~~~~~~~~~~~-------------------~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 139 (239)
T cd03296 95 VAFGLRVKPRSER-------------------PPE-----------AEIRAKVHELLKLVQLDWLADRYPA-----QLSG 139 (239)
T ss_pred Hhhhhhhcccccc-------------------CCH-----------HHHHHHHHHHHHHcCChhhhhcChh-----hCCH
Confidence 9886432111000 000 0011234668899999877776654 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+...+..+||+|++|++|++++.|
T Consensus 140 G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 219 (239)
T cd03296 140 GQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVG 219 (239)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEec
Confidence 9999999999999999999999999999888777777666543 2456666778888889999999999999999999
Q ss_pred CHhHH
Q 044321 391 PREYV 395 (521)
Q Consensus 391 ~~~~v 395 (521)
+++++
T Consensus 220 ~~~~~ 224 (239)
T cd03296 220 TPDEV 224 (239)
T ss_pred CHHHH
Confidence 98876
No 53
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-36 Score=307.23 Aligned_cols=203 Identities=23% Similarity=0.302 Sum_probs=157.3
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------------------------
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------------------------- 213 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------------------------- 213 (521)
.+|+||||+|++|++++|+||||||||||+++|+|+++|+.+
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKI 100 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchH
Confidence 599999999999999999999999999999999999876421
Q ss_pred -----ceeeecCCc-cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHH
Q 044321 214 -----NRCDISQHD-VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITD 287 (521)
Q Consensus 214 -----~~~~v~q~d-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (521)
..+|++|++ ..++..||.||+.|+....+... .+....+.
T Consensus 101 ~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~----------------------------------~~~~~~~~ 146 (305)
T PRK13651 101 KEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSK----------------------------------EEAKKRAA 146 (305)
T ss_pred HHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCH----------------------------------HHHHHHHH
Confidence 026888874 34556799999988654322110 01123456
Q ss_pred HHHHHcCCC-ccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEE
Q 044321 288 YILKILGLD-VCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISL 364 (521)
Q Consensus 288 ~iL~~lgL~-~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i 364 (521)
.+++.+||. +..++.+ ..|||||||||+||++|+.+|++|||||||+++|......+.+++.+. .+++||++
T Consensus 147 ~~l~~~gL~~~~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiiv 221 (305)
T PRK13651 147 KYIELVGLDESYLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILV 221 (305)
T ss_pred HHHHHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 789999996 5666555 459999999999999999999999999999998887776666665443 35667777
Q ss_pred ecChhHHHhhcCeEEEEeCCEEEEecCHhHHH---HHHHHcCCCCCCCCCHH
Q 044321 365 LQPAPETYDLFDDIILISNGHIVYQGPREYVL---EFFKFMGFECPKRKGVA 413 (521)
Q Consensus 365 ~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~---~~f~~~g~~~p~~~~~a 413 (521)
+|+.+.+.++||+|++|++|++++.|+++++. +.+...|+..|.....+
T Consensus 222 tHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~ 273 (305)
T PRK13651 222 THDLDNVLEWTKRTIFFKDGKIIKDGDTYDILSDNKFLIENNMEPPKLLNFV 273 (305)
T ss_pred eeCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCHHHHHHCCCCCChHHHHH
Confidence 88888999999999999999999999999875 33445566655443333
No 54
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.4e-38 Score=292.38 Aligned_cols=195 Identities=22% Similarity=0.293 Sum_probs=164.2
Q ss_pred cCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccc
Q 044321 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVH 224 (521)
Q Consensus 165 ~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~ 224 (521)
.+.+++++++++|||.|++||+++|+|||||||||.+.++.|+..|+.+ +.+|++|+...
T Consensus 11 ~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SI 90 (243)
T COG1137 11 AKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASI 90 (243)
T ss_pred hHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchH
Confidence 4455677899999999999999999999999999999999999988632 23899999999
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
|..+||.||+........... . ..+.+...+.+|+.|+|.++++.+-.
T Consensus 91 Fr~LtV~dNi~~vlE~~~~d~--------~------------------------~~~~~~~l~~LL~ef~i~hlr~~~a~ 138 (243)
T COG1137 91 FRKLTVEDNIMAVLEIREKDL--------K------------------------KAERKEELDALLEEFHITHLRDSKAY 138 (243)
T ss_pred hhcCcHHHHHHHHHhhhhcch--------h------------------------HHHHHHHHHHHHHHhchHHHhcCccc
Confidence 999999999987654322100 0 01122346789999999999987654
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
.||||||+|+.|||||+.+|++++||||+++.|+..+..+++++..+ .+.-|+++-|+..++..+|||.++++
T Consensus 139 -----sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~ 213 (243)
T COG1137 139 -----SLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIIS 213 (243)
T ss_pred -----ccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEe
Confidence 59999999999999999999999999999999998888888777654 35667778899999999999999999
Q ss_pred CCEEEEecCHhHHH
Q 044321 383 NGHIVYQGPREYVL 396 (521)
Q Consensus 383 ~G~iv~~G~~~~v~ 396 (521)
+|+++++|+++++.
T Consensus 214 ~G~vla~G~p~ei~ 227 (243)
T COG1137 214 DGKVLAEGSPEEIV 227 (243)
T ss_pred cCeEEecCCHHHHh
Confidence 99999999999985
No 55
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-36 Score=293.37 Aligned_cols=181 Identities=29% Similarity=0.402 Sum_probs=146.1
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~ 233 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+...++.+|++||
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~ 92 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAEN 92 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHH
Confidence 4699999999999999999999999999999999999876521 13788998888888999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+.+.....+... ......+..+++.+||.+..++.+. .|||
T Consensus 93 l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 133 (213)
T cd03259 93 IAFGLKLRGVPK----------------------------------AEIRARVRELLELVGLEGLLNRYPH-----ELSG 133 (213)
T ss_pred HHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhcChh-----hCCH
Confidence 987643211100 0011234568889999877776665 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++|++++|+..++.++||+|++|++|++++.|
T Consensus 134 G~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 134 GQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999888777776666543 3566777788888899999999999999998765
No 56
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-36 Score=305.01 Aligned_cols=200 Identities=22% Similarity=0.308 Sum_probs=156.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCc-cccC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHD-VHIG 226 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d-~~~~ 226 (521)
.++|+||||+|++||+++|+||||||||||+++|+|+++|+.+ ..+|++|+. ..+.
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 99 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF 99 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh
Confidence 3599999999999999999999999999999999999877521 137888874 2344
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccC
Q 044321 227 EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGD 305 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~ 305 (521)
..||.||+.|+....+... .+....++.+++.+||. ...++.+
T Consensus 100 ~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~-- 143 (290)
T PRK13634 100 EETVEKDICFGPMNFGVSE----------------------------------EDAKQKAREMIELVGLPEELLARSP-- 143 (290)
T ss_pred hhhHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCChhhhhCCc--
Confidence 6799999988643322110 01122456789999996 4566555
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
+.|||||||||+||+||+.+|++|||||||+++|......+.+++... .+++||+++|+..++..+||+|++|+
T Consensus 144 ---~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~ 220 (290)
T PRK13634 144 ---FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMH 220 (290)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 459999999999999999999999999999998887777766665443 25667777888899999999999999
Q ss_pred CCEEEEecCHhHHH---HHHHHcCCCCCCC
Q 044321 383 NGHIVYQGPREYVL---EFFKFMGFECPKR 409 (521)
Q Consensus 383 ~G~iv~~G~~~~v~---~~f~~~g~~~p~~ 409 (521)
+|++++.|+++++. ..+...++.+|..
T Consensus 221 ~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 250 (290)
T PRK13634 221 KGTVFLQGTPREIFADPDELEAIGLDLPET 250 (290)
T ss_pred CCEEEEECCHHHHhcCHHHHHHCCCCCCHH
Confidence 99999999998874 3344556665544
No 57
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=4.2e-36 Score=292.81 Aligned_cols=186 Identities=27% Similarity=0.376 Sum_probs=151.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV~E 232 (521)
+++|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+..+++.+|+++
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 94 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVRE 94 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHH
Confidence 4699999999999999999999999999999999999877521 1378889887888899999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.+.....+... .+....++++++.+||.+..++.++ .||
T Consensus 95 ~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 135 (220)
T cd03263 95 HLRFYARLKGLPK----------------------------------SEIKEEVELLLRVLGLTDKANKRAR-----TLS 135 (220)
T ss_pred HHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhChhh-----hCC
Confidence 9987644322110 0011234668889999877777665 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecC
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVYQGP 391 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~ 391 (521)
|||||||+||+||+.+|++|||||||+++|....+.+.+++.+. ...++++++|+.+.+.++||++++|++|++++.|+
T Consensus 136 ~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~ 215 (220)
T cd03263 136 GGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGS 215 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999888777777766543 23667777888888889999999999999999998
Q ss_pred HhHH
Q 044321 392 REYV 395 (521)
Q Consensus 392 ~~~v 395 (521)
++++
T Consensus 216 ~~~~ 219 (220)
T cd03263 216 PQEL 219 (220)
T ss_pred HHHc
Confidence 8764
No 58
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=4.4e-36 Score=295.78 Aligned_cols=196 Identities=25% Similarity=0.341 Sum_probs=151.4
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~lTV 230 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+..+++.+||
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTV 92 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCH
Confidence 4699999999999999999999999999999999999876421 13688998888889999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
+||+.+.......... ... ..... ..+....+.++++.+||.+..++.++ .
T Consensus 93 ~~~l~~~~~~~~~~~~---~~~----------~~~~~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 143 (236)
T cd03219 93 LENVMVAAQARTGSGL---LLA----------RARRE-----------EREARERAEELLERVGLADLADRPAG-----E 143 (236)
T ss_pred HHHHHHHHhhcccccc---ccc----------ccccc-----------HHHHHHHHHHHHHHcCccchhhCChh-----h
Confidence 9999886532210000 000 00000 00112245678899999877776654 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+.+||+++|+..++..+||+|++|++|++++
T Consensus 144 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~ 223 (236)
T cd03219 144 LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIA 223 (236)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 9999999999999999999999999999998887776666665433 34566777788888999999999999999999
Q ss_pred ecCHhHH
Q 044321 389 QGPREYV 395 (521)
Q Consensus 389 ~G~~~~v 395 (521)
.|+++++
T Consensus 224 ~~~~~~~ 230 (236)
T cd03219 224 EGTPDEV 230 (236)
T ss_pred ecCHHHh
Confidence 9998876
No 59
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.9e-37 Score=303.49 Aligned_cols=203 Identities=25% Similarity=0.312 Sum_probs=173.2
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCc-----------------------eeeecCCcccc
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN-----------------------RCDISQHDVHI 225 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~-----------------------~~~v~q~d~~~ 225 (521)
+....++|+||+|+.||++.|+|-||||||||+++|+++++|+.+. .+.|+|...++
T Consensus 39 g~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLl 118 (386)
T COG4175 39 GLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL 118 (386)
T ss_pred CcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccc
Confidence 4456799999999999999999999999999999999999987421 17899999999
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccC
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGD 305 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 305 (521)
|+.||.||..|+..++|++.. +.+.++.++|+.+||....+.++.
T Consensus 119 PhrtVl~Nv~fGLev~Gv~~~----------------------------------er~~~a~~~l~~VgL~~~~~~yp~- 163 (386)
T COG4175 119 PHRTVLENVAFGLEVQGVPKA----------------------------------EREERALEALELVGLEGYADKYPN- 163 (386)
T ss_pred cchhHhhhhhcceeecCCCHH----------------------------------HHHHHHHHHHHHcCchhhhhcCcc-
Confidence 999999999999988887431 223456789999999999887765
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHH----HHHHcCCeEEEEEecChhHHHhhcCeEEEE
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQ----FIHILEGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~----l~~~~~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
+|||||||||.|||||+.+|+|||||||+|++|+-|...+++ +-.++++ +|+.++|+.+|++++.|+|.+|
T Consensus 164 ----eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~K-TIvFitHDLdEAlriG~rIaim 238 (386)
T COG4175 164 ----ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKK-TIVFITHDLDEALRIGDRIAIM 238 (386)
T ss_pred ----cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCC-eEEEEecCHHHHHhccceEEEe
Confidence 599999999999999999999999999999999877665554 4333444 4555679999999999999999
Q ss_pred eCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHHHh
Q 044321 382 SNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQEV 419 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~v 419 (521)
.+|+||..|++++++ ..|.+..+++|+..+
T Consensus 239 kdG~ivQ~Gtp~eIl--------~~PAndYV~~Fv~~v 268 (386)
T COG4175 239 KDGEIVQVGTPEEIL--------LNPANDYVRDFVRNV 268 (386)
T ss_pred cCCeEEEeCCHHHHH--------cCccHHHHHHHHhcC
Confidence 999999999999995 578888899998765
No 60
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=6.1e-36 Score=293.99 Aligned_cols=187 Identities=22% Similarity=0.317 Sum_probs=151.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~lTV 230 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+...++.+||
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTV 92 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcH
Confidence 4699999999999999999999999999999999999876421 13688998888888999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
+||+.+.....+... .+....++.+++.+||.+..++.+. .
T Consensus 93 ~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 133 (232)
T cd03218 93 EENILAVLEIRGLSK----------------------------------KEREEKLEELLEEFHITHLRKSKAS-----S 133 (232)
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCChh-----h
Confidence 999987543211100 0011235678889999877776654 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+.+++.++||+|++|++|++++
T Consensus 134 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 213 (232)
T cd03218 134 LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLA 213 (232)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 9999999999999999999999999999999888777766665443 35567777888889999999999999999999
Q ss_pred ecCHhHHH
Q 044321 389 QGPREYVL 396 (521)
Q Consensus 389 ~G~~~~v~ 396 (521)
.|+.+++.
T Consensus 214 ~~~~~~~~ 221 (232)
T cd03218 214 EGTPEEIA 221 (232)
T ss_pred EeCHHHhh
Confidence 99988763
No 61
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-36 Score=300.82 Aligned_cols=197 Identities=24% Similarity=0.288 Sum_probs=154.8
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCcc-ccCCCCHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDV-HIGEMTVR 231 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~-~~~~lTV~ 231 (521)
.+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|++. .++.+||.
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 98 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVW 98 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHH
Confidence 599999999999999999999999999999999999887521 1278888752 45678999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGI 311 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~L 311 (521)
||+.|+....+... .+....+..+++.+||.+..++.+. .|
T Consensus 99 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~-----~L 139 (274)
T PRK13647 99 DDVAFGPVNMGLDK----------------------------------DEVERRVEEALKAVRMWDFRDKPPY-----HL 139 (274)
T ss_pred HHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCHHHhcCChh-----hC
Confidence 99987643211100 0112245678999999877776665 59
Q ss_pred ChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 312 SGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 312 SGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++|++++|+.+.+.++||+|++|++|++++.
T Consensus 140 SgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~ 219 (274)
T PRK13647 140 SYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAE 219 (274)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999998887777666665443 256677778888888899999999999999999
Q ss_pred cCHhHHH--HHHHHcCCCCC
Q 044321 390 GPREYVL--EFFKFMGFECP 407 (521)
Q Consensus 390 G~~~~v~--~~f~~~g~~~p 407 (521)
|+++++. +.+...|+.+|
T Consensus 220 g~~~~~~~~~~~~~~~~~~~ 239 (274)
T PRK13647 220 GDKSLLTDEDIVEQAGLRLP 239 (274)
T ss_pred CCHHHhcCHHHHHHcCCCCC
Confidence 9987642 34445566655
No 62
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.3e-35 Score=329.34 Aligned_cols=237 Identities=23% Similarity=0.273 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCC-ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLP-TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLN 162 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~ 162 (521)
.+..+.+.+|+.++++.+++.. .-.....+.+ ..+|+|+|+++.+.
T Consensus 314 ~~~~~~~~~ri~~~l~~~~~~~------~~~~~~~~~~~~~~i~~~~vsf~~~--------------------------- 360 (588)
T PRK11174 314 KAQAVGAAESLVTFLETPLAHP------QQGEKELASNDPVTIEAEDLEILSP--------------------------- 360 (588)
T ss_pred HHHHHHHHHHHHHHHcCCCccc------CCCccccCCCCCceEEEEeeEEecc---------------------------
Confidence 4667788899998887654310 0000001111 23699999988641
Q ss_pred cccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCcc
Q 044321 163 ILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDV 223 (521)
Q Consensus 163 ~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~ 223 (521)
.++++|+|+||+|+||+.++|+||||||||||+++|+|++ |+.+ ..+||+|++.
T Consensus 361 ------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~ 433 (588)
T PRK11174 361 ------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQ 433 (588)
T ss_pred ------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCc
Confidence 1236999999999999999999999999999999999999 6531 1279999875
Q ss_pred ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccc
Q 044321 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMV 303 (521)
Q Consensus 224 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 303 (521)
+| +.|++|||.++. |+.+.+.+.++....+ .++.++ .|++.+||.+
T Consensus 434 LF-~~TI~eNI~~g~-------------------------~~~~~eei~~al~~a~------l~~~i~--~lp~G~dT~v 479 (588)
T PRK11174 434 LP-HGTLRDNVLLGN-------------------------PDASDEQLQQALENAW------VSEFLP--LLPQGLDTPI 479 (588)
T ss_pred CC-CcCHHHHhhcCC-------------------------CCCCHHHHHHHHHHhC------HHHHHH--hccccccccc
Confidence 54 579999999862 1122222222222111 122222 4778899999
Q ss_pred cCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 304 GDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 304 g~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
|+. ...||||||||++|||||+.+|+||||||||+++|.+..+.+.+.+.+. +.|+|+++ |.. .....||+|++|
T Consensus 480 ge~-G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiIt-Hrl-~~i~~aD~Iivl 556 (588)
T PRK11174 480 GDQ-AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVT-HQL-EDLAQWDQIWVM 556 (588)
T ss_pred ccC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEe-cCh-HHHHhCCEEEEE
Confidence 974 5679999999999999999999999999999998887777776655543 45555555 444 556789999999
Q ss_pred eCCEEEEecCHhHHHH
Q 044321 382 SNGHIVYQGPREYVLE 397 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~~ 397 (521)
++|++++.|+++++.+
T Consensus 557 ~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 557 QDGQIVQQGDYAELSQ 572 (588)
T ss_pred eCCeEeecCCHHHHHh
Confidence 9999999999998863
No 63
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-35 Score=300.61 Aligned_cols=198 Identities=20% Similarity=0.272 Sum_probs=154.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCc-cccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHD-VHIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d-~~~~~lTV 230 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|++ ..++.+||
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv 99 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATV 99 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccH
Confidence 3599999999999999999999999999999999999887532 127888876 36778899
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
.||+.|+....+... .+....++++++.+||.+..+..++ .
T Consensus 100 ~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~-----~ 140 (279)
T PRK13650 100 EDDVAFGLENKGIPH----------------------------------EEMKERVNEALELVGMQDFKEREPA-----R 140 (279)
T ss_pred HHHHHhhHHhCCCCH----------------------------------HHHHHHHHHHHHHCCCHhHhhCCcc-----c
Confidence 999988643222110 0112245678999999877776654 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+.+.+ ..||+|++|++|+++
T Consensus 141 LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~-~~~dri~~l~~G~i~ 219 (279)
T PRK13650 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQVE 219 (279)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCEEE
Confidence 9999999999999999999999999999998887766666655432 256666677777777 589999999999999
Q ss_pred EecCHhHHH---HHHHHcCCCCCC
Q 044321 388 YQGPREYVL---EFFKFMGFECPK 408 (521)
Q Consensus 388 ~~G~~~~v~---~~f~~~g~~~p~ 408 (521)
..|+++++. ..++..|+.+|.
T Consensus 220 ~~g~~~~~~~~~~~~~~~~~~~~~ 243 (279)
T PRK13650 220 STSTPRELFSRGNDLLQLGLDIPF 243 (279)
T ss_pred EECCHHHHHcChHHHHHcCCCCcH
Confidence 999998875 234556666554
No 64
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.9e-36 Score=292.85 Aligned_cols=186 Identities=25% Similarity=0.328 Sum_probs=151.0
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccccCCCC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHIGEMT 229 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~~~lT 229 (521)
.+|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..+++.+|
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRT 98 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCc
Confidence 699999999999999999999999999999999999877521 1268888888888899
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCC
Q 044321 230 VRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILR 309 (521)
Q Consensus 230 V~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 309 (521)
+.||+.+.....+... ......+..+++.+||.+..++.+.
T Consensus 99 ~~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 139 (233)
T cd03258 99 VFENVALPLEIAGVPK----------------------------------AEIEERVLELLELVGLEDKADAYPA----- 139 (233)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhhhhcChh-----
Confidence 9999987643221100 0011234668899999877776654
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.+++.+. ++++|++++|+.+++.++||++++|++|++
T Consensus 140 ~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i 219 (233)
T cd03258 140 QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEV 219 (233)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 59999999999999999999999999999999988777776666543 256677777888888999999999999999
Q ss_pred EEecCHhHHH
Q 044321 387 VYQGPREYVL 396 (521)
Q Consensus 387 v~~G~~~~v~ 396 (521)
++.|+.+++.
T Consensus 220 ~~~~~~~~~~ 229 (233)
T cd03258 220 VEEGTVEEVF 229 (233)
T ss_pred EEecCHHHHh
Confidence 9999987763
No 65
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=7.3e-36 Score=289.72 Aligned_cols=181 Identities=27% Similarity=0.366 Sum_probs=145.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~ 233 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..+++.+|++||
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 92 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDN 92 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHH
Confidence 3699999999999999999999999999999999999876421 13788998888888999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+.+.....+... .+....++.+++.+||.+..++.++ .|||
T Consensus 93 l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 133 (213)
T cd03301 93 IAFGLKLRKVPK----------------------------------DEIDERVREVAELLQIEHLLDRKPK-----QLSG 133 (213)
T ss_pred HHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhCChh-----hCCH
Confidence 988643221100 0011245668899999877776665 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .++++++++|+..++.++||+|++|++|++++.|
T Consensus 134 G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 134 GQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999998887766666655432 2456666778888899999999999999999876
No 66
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.2e-36 Score=290.76 Aligned_cols=183 Identities=26% Similarity=0.345 Sum_probs=147.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------ceeeecCCccccCCCCHHHHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------NRCDISQHDVHIGEMTVRETLAF 236 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------~~~~v~q~d~~~~~lTV~E~l~f 236 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..+++.+|++||+.+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 96 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVAL 96 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHH
Confidence 4699999999999999999999999999999999999877521 23788998888888999999988
Q ss_pred HHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHH
Q 044321 237 SARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQR 316 (521)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqr 316 (521)
.....+... ......++.+++.+||.+..++.++ .||||||
T Consensus 97 ~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~ 137 (220)
T cd03293 97 GLELQGVPK----------------------------------AEARERAEELLELVGLSGFENAYPH-----QLSGGMR 137 (220)
T ss_pred HHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCcc-----cCCHHHH
Confidence 643322100 0011235668899999877776654 5999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEe--CCEEEEecC
Q 044321 317 KRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILIS--NGHIVYQGP 391 (521)
Q Consensus 317 QRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~--~G~iv~~G~ 391 (521)
|||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+..++.++||++++|+ +|++++.++
T Consensus 138 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~ 217 (220)
T cd03293 138 QRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVE 217 (220)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEE
Confidence 9999999999999999999999999888777777666443 25566667788888899999999999 799999886
Q ss_pred H
Q 044321 392 R 392 (521)
Q Consensus 392 ~ 392 (521)
.
T Consensus 218 ~ 218 (220)
T cd03293 218 V 218 (220)
T ss_pred e
Confidence 5
No 67
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.2e-35 Score=289.05 Aligned_cols=177 Identities=20% Similarity=0.284 Sum_probs=142.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~~~l 228 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDR 95 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccc
Confidence 3699999999999999999999999999999999999876421 127888988888889
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
||.||+.+.....+... .+....+.++++.+||.+..++.++
T Consensus 96 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 137 (216)
T TIGR00960 96 TVYDNVAFPLRIIGVPP----------------------------------RDANERVSAALEKVGLEGKAHALPM---- 137 (216)
T ss_pred cHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCChh----
Confidence 99999988654321100 0011235668899999877776664
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+.+.+..+||++++|++|++
T Consensus 138 -~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 138 -QLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 59999999999999999999999999999999888777776666543 245667778888888899999999999975
No 68
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-35 Score=299.56 Aligned_cols=199 Identities=20% Similarity=0.247 Sum_probs=153.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCc-cccC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHD-VHIG 226 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d-~~~~ 226 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|++ ..+.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 99 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLF 99 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccc
Confidence 3599999999999999999999999999999999999877521 126888874 2333
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccC
Q 044321 227 EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGD 305 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~ 305 (521)
..||.||+.|+....+... .+....+.++++.+||. +..++.+
T Consensus 100 ~~tv~e~i~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~-- 143 (286)
T PRK13646 100 EDTVEREIIFGPKNFKMNL----------------------------------DEVKNYAHRLLMDLGFSRDVMSQSP-- 143 (286)
T ss_pred hhhHHHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhhCCc--
Confidence 4699999987643221100 01122456788999996 5566554
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
..|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++|++++|+.+++.++||+|++|+
T Consensus 144 ---~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~ 220 (286)
T PRK13646 144 ---FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMK 220 (286)
T ss_pred ---ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 469999999999999999999999999999999988887777766543 35677778888888999999999999
Q ss_pred CCEEEEecCHhHHHH---HHHHcCCCCCC
Q 044321 383 NGHIVYQGPREYVLE---FFKFMGFECPK 408 (521)
Q Consensus 383 ~G~iv~~G~~~~v~~---~f~~~g~~~p~ 408 (521)
+|++++.|+++++.. .....++..|.
T Consensus 221 ~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 249 (286)
T PRK13646 221 EGSIVSQTSPKELFKDKKKLADWHIGLPE 249 (286)
T ss_pred CCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 999999999988753 22334555443
No 69
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9e-36 Score=299.99 Aligned_cols=194 Identities=24% Similarity=0.290 Sum_probs=156.2
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecC
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQ 220 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q 220 (521)
+.+.++.+.+|+|+||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|
T Consensus 30 ~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q 109 (269)
T cd03294 30 ILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQ 109 (269)
T ss_pred hhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEec
Confidence 34445667899999999999999999999999999999999999876421 2378888
Q ss_pred CccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccc
Q 044321 221 HDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCAD 300 (521)
Q Consensus 221 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~d 300 (521)
+..+++.+||.||+.+.....+... .+....++++++.+||.+..+
T Consensus 110 ~~~~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~ 155 (269)
T cd03294 110 SFALLPHRTVLENVAFGLEVQGVPR----------------------------------AEREERAAEALELVGLEGWEH 155 (269)
T ss_pred CcccCCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhh
Confidence 8888888999999988643321100 001123566889999988777
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCe
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDD 377 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~ 377 (521)
+.++ .|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+.+||+++|+.+++.++||+
T Consensus 156 ~~~~-----~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~ 230 (269)
T cd03294 156 KYPD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDR 230 (269)
T ss_pred CCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCE
Confidence 7665 59999999999999999999999999999998888777776665443 256677778888889999999
Q ss_pred EEEEeCCEEEEecCHhHHH
Q 044321 378 IILISNGHIVYQGPREYVL 396 (521)
Q Consensus 378 VivL~~G~iv~~G~~~~v~ 396 (521)
+++|++|++++.|+++++.
T Consensus 231 v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 231 IAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988774
No 70
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-35 Score=311.91 Aligned_cols=189 Identities=23% Similarity=0.282 Sum_probs=156.0
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCcccc
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDVHI 225 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~~~ 225 (521)
+...+|+|+||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..++
T Consensus 39 ~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~ 118 (400)
T PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118 (400)
T ss_pred CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCC
Confidence 445699999999999999999999999999999999999877521 237899998889
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccC
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGD 305 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 305 (521)
+.+||.||+.|.....+... .+....+.++++.+||.+..++.+.
T Consensus 119 ~~~Tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~e~L~~~gL~~~~~~~~~- 163 (400)
T PRK10070 119 PHMTVLDNTAFGMELAGINA----------------------------------EERREKALDALRQVGLENYAHSYPD- 163 (400)
T ss_pred CCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhcCcc-
Confidence 99999999998754332110 0011245678999999887776654
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
.|||||||||+|||||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+.+++..+||+|++|+
T Consensus 164 ----~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~ 239 (400)
T PRK10070 164 ----ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQ 239 (400)
T ss_pred ----cCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEE
Confidence 59999999999999999999999999999999988877777766443 35566777888899999999999999
Q ss_pred CCEEEEecCHhHHH
Q 044321 383 NGHIVYQGPREYVL 396 (521)
Q Consensus 383 ~G~iv~~G~~~~v~ 396 (521)
+|++++.|+++++.
T Consensus 240 ~G~i~~~g~~~~l~ 253 (400)
T PRK10070 240 NGEVVQVGTPDEIL 253 (400)
T ss_pred CCEEEecCCHHHHH
Confidence 99999999998874
No 71
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.3e-35 Score=289.71 Aligned_cols=185 Identities=24% Similarity=0.335 Sum_probs=147.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~lTV 230 (521)
+++|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+|+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTV 92 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcH
Confidence 4699999999999999999999999999999999999876521 13788998888888999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHc-CCCccccccccCccCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKIL-GLDVCADTMVGDEILR 309 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l-gL~~~~dt~vg~~~~r 309 (521)
+||+.+...... .. +....+..+++.+ ++.+..++.+.
T Consensus 93 ~~~l~~~~~~~~--~~----------------------------------~~~~~~~~~l~~~~~l~~~~~~~~~----- 131 (222)
T cd03224 93 EENLLLGAYARR--RA----------------------------------KRKARLERVYELFPRLKERRKQLAG----- 131 (222)
T ss_pred HHHHHHHhhhcC--ch----------------------------------hHHHHHHHHHHHHHhhhhhhhCchh-----
Confidence 999987643211 00 0011234456666 46665665554
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+..++.++||+|++|++|+++
T Consensus 132 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 211 (222)
T cd03224 132 TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVV 211 (222)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEE
Confidence 59999999999999999999999999999998887777766666543 3566777788888899999999999999999
Q ss_pred EecCHhHHH
Q 044321 388 YQGPREYVL 396 (521)
Q Consensus 388 ~~G~~~~v~ 396 (521)
+.|+++++.
T Consensus 212 ~~~~~~~~~ 220 (222)
T cd03224 212 LEGTAAELL 220 (222)
T ss_pred EeCCHHHHh
Confidence 999987763
No 72
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=3.1e-35 Score=292.36 Aligned_cols=187 Identities=24% Similarity=0.306 Sum_probs=149.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------------------ceeeecCCcc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------------------NRCDISQHDV 223 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------------------~~~~v~q~d~ 223 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~ 95 (250)
T PRK11264 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFN 95 (250)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcc
Confidence 3699999999999999999999999999999999999876421 1267888877
Q ss_pred ccCCCCHHHHHHHHHHh-ccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccc
Q 044321 224 HIGEMTVRETLAFSARC-QGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTM 302 (521)
Q Consensus 224 ~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 302 (521)
+++.+|+.||+.++... .+... .+....+..+++.+||....++.
T Consensus 96 ~~~~~tv~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~ 141 (250)
T PRK11264 96 LFPHRTVLENIIEGPVIVKGEPK----------------------------------EEATARARELLAKVGLAGKETSY 141 (250)
T ss_pred cCCCCCHHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCcchhhCC
Confidence 88889999999875321 11000 01112356688899998776665
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEE
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
++ .|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+.++|+++|+..++.++||++++
T Consensus 142 ~~-----~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~ 216 (250)
T PRK11264 142 PR-----RLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIF 216 (250)
T ss_pred hh-----hCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 54 59999999999999999999999999999998887777776665432 245666678888889999999999
Q ss_pred EeCCEEEEecCHhHHH
Q 044321 381 ISNGHIVYQGPREYVL 396 (521)
Q Consensus 381 L~~G~iv~~G~~~~v~ 396 (521)
|++|++++.|+++++.
T Consensus 217 l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 217 MDQGRIVEQGPAKALF 232 (250)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999988763
No 73
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.7e-35 Score=327.09 Aligned_cols=237 Identities=25% Similarity=0.321 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
.+....+.+|+.++++..++ +.+... ....+..+|+|+|++|.++
T Consensus 295 ~~~~~~a~~ri~~~l~~~~~-----~~~~~~--~~~~~~~~I~f~~vsf~y~---------------------------- 339 (567)
T COG1132 295 LQRASAAAERLFELLDEEPE-----VEDPPD--PLKDTIGSIEFENVSFSYP---------------------------- 339 (567)
T ss_pred HHHHHHHHHHHHHHHcCCcc-----ccCCCC--CCCCCCCeEEEEEEEEEcC----------------------------
Confidence 56677888999999987654 111111 0223445799999999973
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccc
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVH 224 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~ 224 (521)
+++++|+||||+|+|||.+||+||||||||||+++|+|+++|..+ ..++|+|+..+
T Consensus 340 -----~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~L 414 (567)
T COG1132 340 -----GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLL 414 (567)
T ss_pred -----CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEccccee
Confidence 134799999999999999999999999999999999999998531 12789987666
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
|. .||++|+.++.. +.+.+...+++.... ..+.+. .+++.+||.||
T Consensus 415 F~-~TI~~NI~~g~~-------------------------~at~eei~~a~k~a~-----~~d~I~---~lp~g~dt~vg 460 (567)
T COG1132 415 FS-GTIRENIALGRP-------------------------DATDEEIEEALKLAN-----AHEFIA---NLPDGYDTIVG 460 (567)
T ss_pred ec-ccHHHHHhcCCC-------------------------CCCHHHHHHHHHHhC-----hHHHHH---hCcccccceec
Confidence 55 999999998732 222233333332221 223332 35788999999
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHH--cCCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHI--LEGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~--~~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
+ .+..||||||||++|||||+.+|++|+|||||+++|.+....+.+.+.. .++|++++ .|....+ ..||+|++|+
T Consensus 461 e-~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiI-aHRlsti-~~aD~IiVl~ 537 (567)
T COG1132 461 E-RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLII-AHRLSTI-KNADRIIVLD 537 (567)
T ss_pred C-CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEE-eccHhHH-HhCCEEEEEE
Confidence 4 5667999999999999999999999999999998877766666655532 24577774 4554444 4599999999
Q ss_pred CCEEEEecCHhHHHH
Q 044321 383 NGHIVYQGPREYVLE 397 (521)
Q Consensus 383 ~G~iv~~G~~~~v~~ 397 (521)
+|++++.|++++++.
T Consensus 538 ~G~i~e~G~h~eLl~ 552 (567)
T COG1132 538 NGRIVERGTHEELLA 552 (567)
T ss_pred CCEEEEecCHHHHHH
Confidence 999999999999864
No 74
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-35 Score=291.96 Aligned_cols=187 Identities=25% Similarity=0.340 Sum_probs=149.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~ 231 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|++.+++.+||.
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVE 93 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHH
Confidence 4699999999999999999999999999999999999876521 127889988888889999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc--cccccccCccCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV--CADTMVGDEILR 309 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~--~~dt~vg~~~~r 309 (521)
||+.+.....+... .+....+.++++.+||.. ..++.+ .
T Consensus 94 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~l~l~~~~~~~~~~-----~ 134 (242)
T cd03295 94 ENIALVPKLLKWPK----------------------------------EKIRERADELLALVGLDPAEFADRYP-----H 134 (242)
T ss_pred HHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCCcHHHHhcCh-----h
Confidence 99987643221100 001123466888999985 555544 4
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+..++.++||+|++|++|++
T Consensus 135 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i 214 (242)
T cd03295 135 ELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEI 214 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 69999999999999999999999999999998887777666665443 256677777888888999999999999999
Q ss_pred EEecCHhHHH
Q 044321 387 VYQGPREYVL 396 (521)
Q Consensus 387 v~~G~~~~v~ 396 (521)
++.|+++++.
T Consensus 215 ~~~~~~~~~~ 224 (242)
T cd03295 215 VQVGTPDEIL 224 (242)
T ss_pred EEecCHHHHH
Confidence 9999988763
No 75
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.9e-35 Score=290.90 Aligned_cols=187 Identities=20% Similarity=0.309 Sum_probs=150.1
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------------ceeeecCCccccCCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------------NRCDISQHDVHIGEMT 229 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------------~~~~v~q~d~~~~~lT 229 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+...++.+|
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 93 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLT 93 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCc
Confidence 4699999999999999999999999999999999999876421 1378888887888899
Q ss_pred HHHHHHHHHH-hccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 230 VRETLAFSAR-CQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 230 V~E~l~f~~~-~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
|.+|+.|... ..+... .+....+.++++.+||....+..+.
T Consensus 94 v~~~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~---- 135 (240)
T PRK09493 94 ALENVMFGPLRVRGASK----------------------------------EEAEKQARELLAKVGLAERAHHYPS---- 135 (240)
T ss_pred HHHHHHhHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChHHHhcChh----
Confidence 9999987532 111100 0011235678889999877676554
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .++++|+++|+.+++..+||++++|++|++
T Consensus 136 -~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 214 (240)
T PRK09493 136 -ELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRI 214 (240)
T ss_pred -hcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 59999999999999999999999999999998887777776666443 355666777888889899999999999999
Q ss_pred EEecCHhHHH
Q 044321 387 VYQGPREYVL 396 (521)
Q Consensus 387 v~~G~~~~v~ 396 (521)
++.|+.+++.
T Consensus 215 ~~~g~~~~~~ 224 (240)
T PRK09493 215 AEDGDPQVLI 224 (240)
T ss_pred EeeCCHHHHh
Confidence 9999988764
No 76
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.9e-35 Score=312.21 Aligned_cols=192 Identities=24% Similarity=0.356 Sum_probs=152.9
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV 230 (521)
++.+|+||||+|++||+++|+||||||||||||+|+|+++|..+ ..+|++|+...++.+||
T Consensus 15 ~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv 94 (402)
T PRK09536 15 DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDV 94 (402)
T ss_pred CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCH
Confidence 34799999999999999999999999999999999999887521 13789998888889999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
+||+.++...... .. . .. ..+....++++++.+||.+..++.+. .
T Consensus 95 ~e~v~~~~~~~~~--~~---------------~-~~------------~~~~~~~v~~~le~vgl~~~~~~~~~-----~ 139 (402)
T PRK09536 95 RQVVEMGRTPHRS--RF---------------D-TW------------TETDRAAVERAMERTGVAQFADRPVT-----S 139 (402)
T ss_pred HHHHHhccchhcc--cc---------------c-CC------------CHHHHHHHHHHHHHcCCchhhcCChh-----h
Confidence 9999886321100 00 0 00 00112356778999999888877664 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
|||||||||+|||||+++|++|||||||+++|......+.++++++ .+++|++++|+.+++.++||++++|++|++++
T Consensus 140 LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~ 219 (402)
T PRK09536 140 LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRA 219 (402)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999998886655555554433 35567777899999999999999999999999
Q ss_pred ecCHhHHH
Q 044321 389 QGPREYVL 396 (521)
Q Consensus 389 ~G~~~~v~ 396 (521)
.|++++++
T Consensus 220 ~G~~~ev~ 227 (402)
T PRK09536 220 AGPPADVL 227 (402)
T ss_pred ecCHHHHh
Confidence 99999753
No 77
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=3.4e-35 Score=291.82 Aligned_cols=187 Identities=22% Similarity=0.315 Sum_probs=147.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC-----CC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS-----LK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~-----~~---------------------~~~~v~q~d~~ 224 (521)
..+|+|+||+|++|++++|+|||||||||||++|+|+++|. .+ ..+|++|+...
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 93 (247)
T TIGR00972 14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNP 93 (247)
T ss_pred eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCccc
Confidence 35999999999999999999999999999999999998764 21 12678887777
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC----cccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD----VCAD 300 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 300 (521)
++ +|+.||+.+.....+.... .+....+..+++.+||. +..+
T Consensus 94 ~~-~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 139 (247)
T TIGR00972 94 FP-MSIYDNIAYGPRLHGIKDK---------------------------------KELDEIVEESLKKAALWDEVKDRLH 139 (247)
T ss_pred CC-CCHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCCcchhhHhh
Confidence 77 9999999876432211000 00112356688899997 5555
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEE
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
+.+ ..|||||||||+||+||+.+|++|||||||+++|......+.+++... ...++|+++|+..++.++||+|+
T Consensus 140 ~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~ 214 (247)
T TIGR00972 140 DSA-----LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTA 214 (247)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEE
Confidence 544 469999999999999999999999999999999887777776666543 23566777888888999999999
Q ss_pred EEeCCEEEEecCHhHHH
Q 044321 380 LISNGHIVYQGPREYVL 396 (521)
Q Consensus 380 vL~~G~iv~~G~~~~v~ 396 (521)
+|++|++++.|+++++.
T Consensus 215 ~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 215 FFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988763
No 78
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.5e-35 Score=290.39 Aligned_cols=187 Identities=22% Similarity=0.286 Sum_probs=147.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC-----CCCCC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL-----DSSLK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l-----~~~~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|++ +|..+ ..+|++|+..+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 92 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNP 92 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchh
Confidence 46999999999999999999999999999999999998 65421 12678888766
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
+ .+||+||+.+.....+.... .+....+.++++.+||.+..+..+.
T Consensus 93 ~-~~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 138 (227)
T cd03260 93 F-PGSIYDNVAYGLRLHGIKLK---------------------------------EELDERVEEALRKAALWDEVKDRLH 138 (227)
T ss_pred c-cccHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCChHHhccCC
Confidence 6 78999999876432211000 0011235668899999876655430
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. +.++||+++|+.+.+.++||++++|++
T Consensus 139 ---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 215 (227)
T cd03260 139 ---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLN 215 (227)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeC
Confidence 3569999999999999999999999999999999888777777766543 226677778888889999999999999
Q ss_pred CEEEEecCHhH
Q 044321 384 GHIVYQGPREY 394 (521)
Q Consensus 384 G~iv~~G~~~~ 394 (521)
|++++.|++++
T Consensus 216 G~i~~~g~~~~ 226 (227)
T cd03260 216 GRLVEFGPTEQ 226 (227)
T ss_pred CEEEEecCccc
Confidence 99999998765
No 79
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=2.1e-35 Score=287.53 Aligned_cols=180 Identities=30% Similarity=0.443 Sum_probs=146.1
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCHHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTVRET 233 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV~E~ 233 (521)
++|+|+||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+||.||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 98 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAREN 98 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHH
Confidence 699999999999999999999999999999999999877531 13688998888888999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+.+.....+... .+....++++++.+||.+..++.++ .|||
T Consensus 99 l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 139 (218)
T cd03266 99 LEYFAGLYGLKG----------------------------------DELTARLEELADRLGMEELLDRRVG-----GFST 139 (218)
T ss_pred HHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhhhhh-----hcCH
Confidence 987543221100 0112245678899999887776665 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+.++|+++|+..++..+||++++|++|++++.|
T Consensus 140 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 140 GMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999888777776666543 3556677778888899999999999999998764
No 80
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-35 Score=291.03 Aligned_cols=195 Identities=26% Similarity=0.309 Sum_probs=149.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~~~l 228 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+...++.+
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERL 93 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccC
Confidence 4699999999999999999999999999999999999876421 136888888888889
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
||.||+.+....... . ...+ .+.. .......+..+++.+||.+..++.++
T Consensus 94 tv~~~l~~~~~~~~~-~----~~~~------~~~~---------------~~~~~~~~~~~l~~~~l~~~~~~~~~---- 143 (241)
T cd03256 94 SVLENVLSGRLGRRS-T----WRSL------FGLF---------------PKEEKQRALAALERVGLLDKAYQRAD---- 143 (241)
T ss_pred cHHHHHHhhhcccch-h----hhhh------cccC---------------cHHHHHHHHHHHHHcCChhhhCCCcc----
Confidence 999999875321100 0 0000 0000 00011235668899999876666554
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++||+++|+.+++..+||++++|++|+
T Consensus 144 -~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~ 222 (241)
T cd03256 144 -QLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGR 222 (241)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 59999999999999999999999999999998887777666665443 25567777888888999999999999999
Q ss_pred EEEecCHhHHH
Q 044321 386 IVYQGPREYVL 396 (521)
Q Consensus 386 iv~~G~~~~v~ 396 (521)
+++.|+++++.
T Consensus 223 i~~~~~~~~~~ 233 (241)
T cd03256 223 IVFDGPPAELT 233 (241)
T ss_pred EEeecCHHHhh
Confidence 99999988763
No 81
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-35 Score=285.61 Aligned_cols=181 Identities=24% Similarity=0.293 Sum_probs=146.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------ceeeecCCccccCCCCHHHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------NRCDISQHDVHIGEMTVRETLA 235 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------~~~~v~q~d~~~~~lTV~E~l~ 235 (521)
+.+|+||||+|.+|++++|+|||||||||||++|+|+++|..+ ..+|++|+...++.+|+.||+.
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 92 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLV 92 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHH
Confidence 4699999999999999999999999999999999999876521 1368899888888899999998
Q ss_pred HHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHH
Q 044321 236 FSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQ 315 (521)
Q Consensus 236 f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGq 315 (521)
+.....+... .+....++++++.+||.+..++.+. .|||||
T Consensus 93 ~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 133 (210)
T cd03269 93 YLAQLKGLKK----------------------------------EEARRRIDEWLERLELSEYANKRVE-----ELSKGN 133 (210)
T ss_pred HHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCChHHHhCcHh-----hCCHHH
Confidence 7643322100 0011235668889999877776654 599999
Q ss_pred HHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 316 RKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 316 rQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+.+|++++|+..++.++||++++|++|++++.|
T Consensus 134 ~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 134 QQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999998887777666665443 3456777788888888999999999999998765
No 82
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=4.9e-36 Score=277.03 Aligned_cols=181 Identities=22% Similarity=0.313 Sum_probs=145.7
Q ss_pred eeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCc-----------------eeeecCCccccCCCCHHHHHHHHH
Q 044321 176 DVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN-----------------RCDISQHDVHIGEMTVRETLAFSA 238 (521)
Q Consensus 176 dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~-----------------~~~v~q~d~~~~~lTV~E~l~f~~ 238 (521)
.+++.|+.||+++|+|||||||||||++|+|+..|..+. ...++|++.+|.++||.+|+.++.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl 96 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGL 96 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccC
Confidence 478899999999999999999999999999998876321 167889999999999999999874
Q ss_pred HhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHH
Q 044321 239 RCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKR 318 (521)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQR 318 (521)
.-. -... .+.++.++.++..+||..+.+..++. ||||||||
T Consensus 97 ~P~------------------------LkL~----------a~~r~~v~~aa~~vGl~~~~~RLP~~-----LSGGqRQR 137 (231)
T COG3840 97 SPG------------------------LKLN----------AEQREKVEAAAAQVGLAGFLKRLPGE-----LSGGQRQR 137 (231)
T ss_pred Ccc------------------------cccC----------HHHHHHHHHHHHHhChhhHhhhCccc-----cCchHHHH
Confidence 311 0000 11233567789999999999888765 99999999
Q ss_pred HHHHHHHcCCCcEEEEeCCChhhHHHHHH----HHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhH
Q 044321 319 VTTGEMLVGPAQALFMDEISNSTTFQIVN----SLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREY 394 (521)
Q Consensus 319 vaIAraLv~~P~iLlLDEPTs~~~~~i~~----~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~ 394 (521)
|++||+|+++-+||+||||++++|+.... .+.++..+.+.|++++ +|+.+++..++|+++++++|+|.++|+.++
T Consensus 138 vALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmV-TH~~~Da~~ia~~~~fl~~Gri~~~g~~~~ 216 (231)
T COG3840 138 VALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMV-THHPEDAARIADRVVFLDNGRIAAQGSTQE 216 (231)
T ss_pred HHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEE-eCCHHHHHHhhhceEEEeCCEEEeeccHHH
Confidence 99999999999999999999977665544 4455544445565555 555678999999999999999999999887
Q ss_pred HH
Q 044321 395 VL 396 (521)
Q Consensus 395 v~ 396 (521)
++
T Consensus 217 ~~ 218 (231)
T COG3840 217 LL 218 (231)
T ss_pred Hh
Confidence 74
No 83
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=4.3e-35 Score=303.21 Aligned_cols=190 Identities=22% Similarity=0.224 Sum_probs=149.1
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCc--ccc
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHD--VHI 225 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d--~~~ 225 (521)
...+|+||||+|++||+++|+|+||||||||+++|+|++.|+.+ ..+||+|+. .++
T Consensus 33 ~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~ 112 (331)
T PRK15079 33 TLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLN 112 (331)
T ss_pred ceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcC
Confidence 35799999999999999999999999999999999999877421 137888886 477
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-cccccccc
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVG 304 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg 304 (521)
+.+||.+++.+........ ++ ..+....+.++|+.+||. ...++++
T Consensus 113 p~~tv~~~i~~~l~~~~~~--------~~------------------------~~~~~~~~~~~l~~vgl~~~~~~~~p- 159 (331)
T PRK15079 113 PRMTIGEIIAEPLRTYHPK--------LS------------------------RQEVKDRVKAMMLKVGLLPNLINRYP- 159 (331)
T ss_pred CCCCHHHHHHHHHHHhccC--------CC------------------------HHHHHHHHHHHHHHcCCChHHhcCCc-
Confidence 8899999998864322100 00 001123456789999994 3455554
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
..|||||||||+||+||+.+|++||+||||+++|......+.+++.++ .++++++++|+...+.++||+|++|
T Consensus 160 ----~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl 235 (331)
T PRK15079 160 ----HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVM 235 (331)
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 569999999999999999999999999999988776665555544332 2567777889999999999999999
Q ss_pred eCCEEEEecCHhHHH
Q 044321 382 SNGHIVYQGPREYVL 396 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~ 396 (521)
++|++++.|+.+++.
T Consensus 236 ~~G~ive~g~~~~i~ 250 (331)
T PRK15079 236 YLGHAVELGTYDEVY 250 (331)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998874
No 84
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.5e-35 Score=310.81 Aligned_cols=192 Identities=26% Similarity=0.290 Sum_probs=158.3
Q ss_pred CCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------------------ceeee
Q 044321 166 SRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------------------NRCDI 218 (521)
Q Consensus 166 ~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------------------~~~~v 218 (521)
++++...+|+||||+|++||+++|+||||||||||+++|+|+++|+.+ ..+|+
T Consensus 32 ~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 32 DETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred HhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 345667899999999999999999999999999999999999876421 23788
Q ss_pred cCCccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcc
Q 044321 219 SQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVC 298 (521)
Q Consensus 219 ~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~ 298 (521)
+|+..+++.+||.||+.|+....+... .+....+.++++.+||.+.
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~g~~~----------------------------------~~~~~~a~e~le~vgL~~~ 157 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQGMPE----------------------------------AERRKRVDEQLELVGLAQW 157 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchh
Confidence 999889999999999998754332210 0112245678999999888
Q ss_pred ccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhc
Q 044321 299 ADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLF 375 (521)
Q Consensus 299 ~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~ 375 (521)
.++.++ .|||||||||+|||||+.+|+||||||||+++|......+.+++.+. .+.+|++++|+.+++.++|
T Consensus 158 ~~~~~~-----~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~ 232 (382)
T TIGR03415 158 ADKKPG-----ELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIG 232 (382)
T ss_pred hcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 777665 49999999999999999999999999999999888777776665433 2566777788899999999
Q ss_pred CeEEEEeCCEEEEecCHhHHH
Q 044321 376 DDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 376 D~VivL~~G~iv~~G~~~~v~ 396 (521)
|+|++|++|+++..|+++++.
T Consensus 233 DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 233 NRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CEEEEEECCEEEEecCHHHHh
Confidence 999999999999999998884
No 85
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=4.6e-35 Score=330.45 Aligned_cols=235 Identities=22% Similarity=0.250 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCC--ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLP--TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSL 161 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~ 161 (521)
.++.+..++|+.++++.+.+.. ......+ ...|+|+||+|.+..
T Consensus 418 ~~~~~~~~~ri~~~l~~~~e~~---------~~~~~~~~~~~~I~~~nvsf~Y~~------------------------- 463 (686)
T TIGR03797 418 ILAVIPLWERAKPILEALPEVD---------EAKTDPGKLSGAIEVDRVTFRYRP------------------------- 463 (686)
T ss_pred HHHHHHHHHHHHHHhcCCcccc---------cCcCCCCCCCceEEEEEEEEEcCC-------------------------
Confidence 5677788889988887665421 0001111 236999999999731
Q ss_pred ccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCc
Q 044321 162 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHD 222 (521)
Q Consensus 162 ~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d 222 (521)
..+.+|+|+||+|+||+.++|+||||||||||+|+|+|+++|+.+ ..+||+|++
T Consensus 464 -------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~ 536 (686)
T TIGR03797 464 -------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNG 536 (686)
T ss_pred -------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCC
Confidence 123699999999999999999999999999999999999988632 128999987
Q ss_pred cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccc
Q 044321 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTM 302 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 302 (521)
.+| ..|++||+.++.. . +.+.+.++....+ . ++.++ .+++..||.
T Consensus 537 ~lf-~gTI~eNi~~~~~---~-----------------------~~e~i~~al~~a~-----l-~~~i~--~lp~G~dt~ 581 (686)
T TIGR03797 537 RLM-SGSIFENIAGGAP---L-----------------------TLDEAWEAARMAG-----L-AEDIR--AMPMGMHTV 581 (686)
T ss_pred ccC-cccHHHHHhcCCC---C-----------------------CHHHHHHHHHHcC-----c-HHHHH--hcccccccc
Confidence 655 5799999988521 0 1111111111111 1 11111 367788999
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
+|+. ...||||||||++|||||+.+|++|||||||+++|....+.+.+.+...+.|+|+++ |.. +....||+|++|+
T Consensus 582 ige~-G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiIt-Hr~-~~i~~~D~Iivl~ 658 (686)
T TIGR03797 582 ISEG-GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIA-HRL-STIRNADRIYVLD 658 (686)
T ss_pred ccCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEe-cCh-HHHHcCCEEEEEE
Confidence 9864 578999999999999999999999999999999998888888777766666665554 544 5567799999999
Q ss_pred CCEEEEecCHhHHHH
Q 044321 383 NGHIVYQGPREYVLE 397 (521)
Q Consensus 383 ~G~iv~~G~~~~v~~ 397 (521)
+|++++.|+++++++
T Consensus 659 ~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 659 AGRVVQQGTYDELMA 673 (686)
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999998853
No 86
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=3.9e-35 Score=295.28 Aligned_cols=188 Identities=21% Similarity=0.290 Sum_probs=150.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~~~l 228 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+...++.+
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 99 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDM 99 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCC
Confidence 4699999999999999999999999999999999999876421 136888888788889
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
||.||+.+......... . .+....+..+++.+||.+..++.++
T Consensus 100 tv~enl~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~gl~~~~~~~~~---- 142 (269)
T PRK11831 100 NVFDNVAYPLREHTQLP---------A------------------------PLLHSTVMMKLEAVGLRGAAKLMPS---- 142 (269)
T ss_pred CHHHHHHHHHHHccCCC---------H------------------------HHHHHHHHHHHHHcCChhhhhCChh----
Confidence 99999987532110000 0 0011234567889999887777665
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+.+++.++||+|++|++|+
T Consensus 143 -~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~ 221 (269)
T PRK11831 143 -ELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKK 221 (269)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCE
Confidence 59999999999999999999999999999998888777776665543 25667777888889999999999999999
Q ss_pred EEEecCHhHHH
Q 044321 386 IVYQGPREYVL 396 (521)
Q Consensus 386 iv~~G~~~~v~ 396 (521)
+++.|+++++.
T Consensus 222 i~~~g~~~~~~ 232 (269)
T PRK11831 222 IVAHGSAQALQ 232 (269)
T ss_pred EEEeCCHHHHh
Confidence 99999988763
No 87
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=2.7e-35 Score=284.87 Aligned_cols=177 Identities=26% Similarity=0.367 Sum_probs=144.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~ 233 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..+++.+||.||
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 92 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTAREN 92 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHH
Confidence 4699999999999999999999999999999999999876421 13688898888888999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+.+.....+. ....++.+++.+||.+..++.++ .|||
T Consensus 93 l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 129 (208)
T cd03268 93 LRLLARLLGI--------------------------------------RKKRIDEVLDVVGLKDSAKKKVK-----GFSL 129 (208)
T ss_pred HHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHhhhHh-----hCCH
Confidence 9876432110 01134567889999877776655 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+.++++++|+.+.+..+||++++|++|++++.|
T Consensus 130 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 130 GMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999888777776666543 3456666778888888999999999999998765
No 88
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=5.4e-35 Score=288.44 Aligned_cols=187 Identities=24% Similarity=0.311 Sum_probs=148.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV~E 232 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+...++.+|+.|
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 93 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQ 93 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHH
Confidence 4699999999999999999999999999999999999876521 1368888877778899999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.+.....+... .+....+.++++.+||.+..++.++ .||
T Consensus 94 ~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS 134 (236)
T TIGR03864 94 NLRYHAALHGLSR----------------------------------AEARERIAALLARLGLAERADDKVR-----ELN 134 (236)
T ss_pred HHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcCChh-----hCC
Confidence 9987543221100 0011234567888999877776665 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
|||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .++++++++|+.+.+. .||++++|++|++++.
T Consensus 135 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~i~~l~~G~i~~~ 213 (236)
T TIGR03864 135 GGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIE-ADDRLVVLHRGRVLAD 213 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHh-hCCEEEEEeCCeEEEe
Confidence 99999999999999999999999999998887777666655432 2456666778877776 5999999999999999
Q ss_pred cCHhHHHH
Q 044321 390 GPREYVLE 397 (521)
Q Consensus 390 G~~~~v~~ 397 (521)
|+++++..
T Consensus 214 ~~~~~~~~ 221 (236)
T TIGR03864 214 GAAAELRG 221 (236)
T ss_pred CCHHHHHH
Confidence 99887753
No 89
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-35 Score=300.64 Aligned_cols=204 Identities=20% Similarity=0.332 Sum_probs=155.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------------------ce
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------------------NR 215 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------------------~~ 215 (521)
..+|+||||+|++|++++|+||||||||||+++|+|+++|..+ ..
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 118 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRV 118 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcE
Confidence 3599999999999999999999999999999999999876421 02
Q ss_pred eeecCCcc-ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcC
Q 044321 216 CDISQHDV-HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILG 294 (521)
Q Consensus 216 ~~v~q~d~-~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg 294 (521)
+|++|++. .+...||.||+.|+....+... .+....+.++++.+|
T Consensus 119 g~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~g 164 (320)
T PRK13631 119 SMVFQFPEYQLFKDTIEKDIMFGPVALGVKK----------------------------------SEAKKLAKFYLNKMG 164 (320)
T ss_pred EEEEECchhccccchHHHHHHhhHHhcCCCH----------------------------------HHHHHHHHHHHHHcC
Confidence 57777642 3334699999887643211100 011224567889999
Q ss_pred CC-ccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHH
Q 044321 295 LD-VCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPET 371 (521)
Q Consensus 295 L~-~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~ 371 (521)
|. ...++.+ ..|||||||||+|||||+.+|++|||||||+++|....+.+.+++... .+++||+++|+.+.+
T Consensus 165 L~~~~~~~~~-----~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~ 239 (320)
T PRK13631 165 LDDSYLERSP-----FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHV 239 (320)
T ss_pred CChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH
Confidence 96 4555444 469999999999999999999999999999998887777766665432 355677778888888
Q ss_pred HhhcCeEEEEeCCEEEEecCHhHHH---HHHHHcCCCCCCCCCHH
Q 044321 372 YDLFDDIILISNGHIVYQGPREYVL---EFFKFMGFECPKRKGVA 413 (521)
Q Consensus 372 ~~l~D~VivL~~G~iv~~G~~~~v~---~~f~~~g~~~p~~~~~a 413 (521)
..+||+|++|++|++++.|+++++. ..+...|+.+|....+.
T Consensus 240 ~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~ 284 (320)
T PRK13631 240 LEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPRVIQVI 284 (320)
T ss_pred HHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCChHHHHH
Confidence 8999999999999999999999875 44566777776544443
No 90
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-35 Score=285.10 Aligned_cols=180 Identities=31% Similarity=0.402 Sum_probs=146.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV~E 232 (521)
..+|+|+||+|++| +++|+||||||||||+++|+|+++|+.+ ..+|++|+..+++.+||.|
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 91 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVRE 91 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHH
Confidence 36999999999999 9999999999999999999999876421 1368899888888899999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.+.....+... .+....++.+++.+||.+..++.++ .||
T Consensus 92 ~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 132 (211)
T cd03264 92 FLDYIAWLKGIPS----------------------------------KEVKARVDEVLELVNLGDRAKKKIG-----SLS 132 (211)
T ss_pred HHHHHHHHhCCCH----------------------------------HHHHHHHHHHHHHCCCHHHHhCchh-----hCC
Confidence 9987643221100 0011235668889999877776665 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
|||||||+||+||+.+|++|||||||+++|....+.+.+++.+. ..+++++++|+...+.++||++++|++|++++.|
T Consensus 133 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 133 GGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999988887777776544 2366777788888888999999999999998765
No 91
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-35 Score=296.14 Aligned_cols=187 Identities=20% Similarity=0.248 Sum_probs=149.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCcc-ccC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDV-HIG 226 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~-~~~ 226 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+.. .+.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 99 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF 99 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc
Confidence 4699999999999999999999999999999999999887521 1267888752 344
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccC
Q 044321 227 EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGD 305 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~ 305 (521)
.+||.||+.|+....+... .+....++++++.+||. ...++.++
T Consensus 100 ~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~~- 144 (287)
T PRK13641 100 ENTVLKDVEFGPKNFGFSE----------------------------------DEAKEKALKWLKKVGLSEDLISKSPF- 144 (287)
T ss_pred cchHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhHhhCCcc-
Confidence 6899999987643211100 01122456789999996 56666654
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+.+.+..+||+|++|++
T Consensus 145 ----~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~ 220 (287)
T PRK13641 145 ----ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEH 220 (287)
T ss_pred ----cCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 59999999999999999999999999999999988877777776544 356777788999999999999999999
Q ss_pred CEEEEecCHhHHH
Q 044321 384 GHIVYQGPREYVL 396 (521)
Q Consensus 384 G~iv~~G~~~~v~ 396 (521)
|++++.|+++++.
T Consensus 221 G~i~~~g~~~~~~ 233 (287)
T PRK13641 221 GKLIKHASPKEIF 233 (287)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998875
No 92
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-35 Score=291.27 Aligned_cols=185 Identities=19% Similarity=0.239 Sum_probs=145.4
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CCC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SLK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++| +.+ ..+|++|+...
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 104 (258)
T PRK14268 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNP 104 (258)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCcc
Confidence 3699999999999999999999999999999999998764 110 12688887766
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC----cccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD----VCAD 300 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 300 (521)
++ +|+.||+.|.....+... .+....+..+++.+|+. +..+
T Consensus 105 ~~-~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 149 (258)
T PRK14268 105 FP-MSIYDNVAYGPRIHGANK----------------------------------KDLDGVVENALRSAALWDETSDRLK 149 (258)
T ss_pred Cc-ccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCCcchhhhhc
Confidence 66 899999988643221100 00112345678888874 3344
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEE
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
+. +..|||||||||+||+||+.+|++|||||||+++|......+.+++++. .+++||+++|+..++.++||+|+
T Consensus 150 ~~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~ 224 (258)
T PRK14268 150 SP-----ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTG 224 (258)
T ss_pred CC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEE
Confidence 44 4469999999999999999999999999999999888777777766543 24667777888888999999999
Q ss_pred EEeCCEEEEecCHhHH
Q 044321 380 LISNGHIVYQGPREYV 395 (521)
Q Consensus 380 vL~~G~iv~~G~~~~v 395 (521)
+|++|++++.|+++++
T Consensus 225 ~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 225 FFLMGELIEFGQTRQI 240 (258)
T ss_pred EEECCEEEEeCCHHHH
Confidence 9999999999998877
No 93
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-35 Score=290.96 Aligned_cols=187 Identities=20% Similarity=0.252 Sum_probs=144.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC-----CC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS-----LK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~-----~~---------------------~~~~v~q~d~~ 224 (521)
..+|+||||+|++|++++|+|||||||||||++|+|+++|+ .+ ..+|++|+...
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 99 (254)
T PRK14273 20 FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNP 99 (254)
T ss_pred ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccc
Confidence 35999999999999999999999999999999999998752 10 12678887666
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC----cccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD----VCAD 300 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 300 (521)
+ .+||+||+.|.....+.... ......+..+++.+|+. +..+
T Consensus 100 ~-~~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~~ 145 (254)
T PRK14273 100 F-LMSIYDNISYGPKIHGTKDK---------------------------------KKLDEIVEQSLKKSALWNEVKDKLN 145 (254)
T ss_pred c-cCcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHhCCchhhHHHHh
Confidence 6 48999999886432211000 00112345567777763 3345
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEE
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
+.+ +.|||||||||+|||||+.+|++|||||||+++|......+.+++.+. .++++|+++|+..++.++||+++
T Consensus 146 ~~~-----~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~ 220 (254)
T PRK14273 146 TNA-----LSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTA 220 (254)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 544 469999999999999999999999999999998888777776666544 24566677888888899999999
Q ss_pred EEeCCEEEEecCHhHHH
Q 044321 380 LISNGHIVYQGPREYVL 396 (521)
Q Consensus 380 vL~~G~iv~~G~~~~v~ 396 (521)
+|++|+++..|+++++.
T Consensus 221 ~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 221 FFLNGCIEEESSTDELF 237 (254)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999998873
No 94
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-35 Score=295.47 Aligned_cols=199 Identities=23% Similarity=0.286 Sum_probs=154.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------------ceeeecCCcc-ccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------------NRCDISQHDV-HIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------------~~~~v~q~d~-~~~~l 228 (521)
+.+|+||||+|++||+++|+||||||||||+++|+|+++|..+ ..+|++|+.. .+...
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 98 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSA 98 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccc
Confidence 3599999999999999999999999999999999999876521 1278888753 34568
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
||+||+.+.....+... .+....++.+++.+||.+..++.+.
T Consensus 99 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~---- 140 (283)
T PRK13636 99 SVYQDVSFGAVNLKLPE----------------------------------DEVRKRVDNALKRTGIEHLKDKPTH---- 140 (283)
T ss_pred cHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhhhhCCcc----
Confidence 99999987643221100 0111245678899999887776654
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
.||||||||++||+||+.+|++|||||||+++|......+.+++.+. .+++|++++|+.+++..+||++++|++|+
T Consensus 141 -~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~ 219 (283)
T PRK13636 141 -CLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGR 219 (283)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 59999999999999999999999999999998887776665555433 25566777888888889999999999999
Q ss_pred EEEecCHhHHHH---HHHHcCCCCCC
Q 044321 386 IVYQGPREYVLE---FFKFMGFECPK 408 (521)
Q Consensus 386 iv~~G~~~~v~~---~f~~~g~~~p~ 408 (521)
+++.|+++++.. .+...++.+|.
T Consensus 220 i~~~g~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T PRK13636 220 VILQGNPKEVFAEKEMLRKVNLRLPR 245 (283)
T ss_pred EEEeCCHHHHhcCHHHHHHcCCCCCc
Confidence 999999988753 33345555543
No 95
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=2.8e-35 Score=291.24 Aligned_cols=194 Identities=24% Similarity=0.283 Sum_probs=149.1
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~~~l 228 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+...++.+
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERL 94 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccc
Confidence 4699999999999999999999999999999999999876421 127888888788889
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
||.||+.++....... . ..+. +. ...+....+.++++.+||.+..++.+.
T Consensus 95 tv~~~l~~~~~~~~~~--~---~~~~------~~---------------~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 144 (243)
T TIGR02315 95 TVLENVLHGRLGYKPT--W---RSLL------GR---------------FSEEDKERALSALERVGLADKAYQRAD---- 144 (243)
T ss_pred cHHHHHhhcccccccc--h---hhhh------cc---------------ccHHHHHHHHHHHHHcCcHhhhcCCcc----
Confidence 9999997653210000 0 0000 00 000112245668899999876666554
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+.+.+.++||++++|++|+
T Consensus 145 -~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~ 223 (243)
T TIGR02315 145 -QLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGE 223 (243)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence 59999999999999999999999999999999887777766665443 25667777888888889999999999999
Q ss_pred EEEecCHhHH
Q 044321 386 IVYQGPREYV 395 (521)
Q Consensus 386 iv~~G~~~~v 395 (521)
+++.|+++++
T Consensus 224 i~~~~~~~~~ 233 (243)
T TIGR02315 224 IVFDGAPSEL 233 (243)
T ss_pred EEecCCHHHh
Confidence 9999998775
No 96
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=9.1e-35 Score=300.74 Aligned_cols=205 Identities=19% Similarity=0.181 Sum_probs=154.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC---CC-----------------------ceeeecCCc--
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS---LK-----------------------NRCDISQHD-- 222 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~---~~-----------------------~~~~v~q~d-- 222 (521)
..+|+||||+|++||+++|+|+||||||||+++|+|+++|. .+ ..+||+|+.
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 46999999999999999999999999999999999999773 10 136777775
Q ss_pred cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccc
Q 044321 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTM 302 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 302 (521)
.+.+.+|+.+++.+........ ...+....+.++|+.+||++..+.
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~~---------------------------------~~~~~~~~~~~~L~~vgL~~~~~~- 154 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKGM---------------------------------SKAEAFEESVRMLDAVKMPEARKR- 154 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcCC---------------------------------CHHHHHHHHHHHHHHcCCCChHHH-
Confidence 4667788888776543221100 001112345678899999754322
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEE
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
+ +.+++.|||||+|||+||+||+.+|++||+||||+++|......+.+++.+. .++++++++|+...+..+||+|+
T Consensus 155 ~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~ 233 (330)
T PRK09473 155 M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVL 233 (330)
T ss_pred h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEE
Confidence 2 2466789999999999999999999999999999988876666555544332 25677778899888999999999
Q ss_pred EEeCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHHH
Q 044321 380 LISNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQE 418 (521)
Q Consensus 380 vL~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~ 418 (521)
+|++|+|++.|+++++. ..|.+..+..++..
T Consensus 234 vm~~G~ive~g~~~~i~--------~~p~~pyt~~l~~~ 264 (330)
T PRK09473 234 VMYAGRTMEYGNARDVF--------YQPSHPYSIGLLNA 264 (330)
T ss_pred EEECCEEEEECCHHHHH--------hCCCCHHHHHHHHh
Confidence 99999999999999884 34555555555543
No 97
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=3e-35 Score=286.41 Aligned_cols=176 Identities=24% Similarity=0.304 Sum_probs=140.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCccccCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDVHIGE 227 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~~~~~ 227 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+...++.
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPD 96 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCC
Confidence 4699999999999999999999999999999999999876421 13688888888888
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCcc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI 307 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 307 (521)
+||+||+.+.....+... ......++.+++.+||.+..++.++
T Consensus 97 ~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 139 (218)
T cd03255 97 LTALENVELPLLLAGVPK----------------------------------KERRERAEELLERVGLGDRLNHYPS--- 139 (218)
T ss_pred CcHHHHHHHHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhcChh---
Confidence 999999988653322100 0011235668899999877776654
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+..++. +||++++|++|
T Consensus 140 --~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G 216 (218)
T cd03255 140 --ELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDG 216 (218)
T ss_pred --hcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCC
Confidence 59999999999999999999999999999999888777776666543 2456666777777776 99999999999
Q ss_pred EE
Q 044321 385 HI 386 (521)
Q Consensus 385 ~i 386 (521)
++
T Consensus 217 ~i 218 (218)
T cd03255 217 KI 218 (218)
T ss_pred cC
Confidence 74
No 98
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.4e-35 Score=292.42 Aligned_cols=208 Identities=23% Similarity=0.290 Sum_probs=155.1
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC-CCCC---ce------------------------eeecCC
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD-SSLK---NR------------------------CDISQH 221 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~-~~~~---~~------------------------~~v~q~ 221 (521)
...+++||||+|++||+++|+|.|||||||+.++|+|+++ +... +. ++|+|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4679999999999999999999999999999999999997 4221 11 344443
Q ss_pred c--cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhh-hchhhhhHHHHHHHHcCCCcc
Q 044321 222 D--VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAAT-EGQEVSVITDYILKILGLDVC 298 (521)
Q Consensus 222 d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~iL~~lgL~~~ 298 (521)
+ .+.|-+||.+.+.-..+.+ ... ...+....+.++|+.+||++-
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h---------------------------------~~~~~~~ea~~~a~~~L~~Vgi~~~ 143 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLH---------------------------------GKGLSKKEAKERAIELLELVGIPDP 143 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHh---------------------------------hcchhhHHHHHHHHHHHHHcCCCCH
Confidence 2 1233333333222211110 000 123345567789999999863
Q ss_pred ccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHH----HHHHHHHHHHHHcCCeEEEEEecChhHHHhh
Q 044321 299 ADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTF----QIVNSLRQFIHILEGTILISLLQPAPETYDL 374 (521)
Q Consensus 299 ~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~----~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l 374 (521)
.. +-+.++.+|||||||||.||.||+.+|++||.||||+++|. ++++.|+++.++ .++.++.+||+...+.++
T Consensus 144 ~~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e-~~~aiilITHDl~vva~~ 220 (316)
T COG0444 144 ER--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQRE-KGTALILITHDLGVVAEI 220 (316)
T ss_pred HH--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHh
Confidence 21 22456778999999999999999999999999999998765 566666666553 467778889999999999
Q ss_pred cCeEEEEeCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHHHhhC
Q 044321 375 FDDIILISNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQEVTS 421 (521)
Q Consensus 375 ~D~VivL~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~v~s 421 (521)
||+|+||+.|+||+.|+.+++ |..|.+..+..++..+..
T Consensus 221 aDri~VMYaG~iVE~g~~~~i--------~~~P~HPYT~~Ll~s~P~ 259 (316)
T COG0444 221 ADRVAVMYAGRIVEEGPVEEI--------FKNPKHPYTRGLLNSLPR 259 (316)
T ss_pred cceEEEEECcEEEEeCCHHHH--------hcCCCChHHHHHHHhCcc
Confidence 999999999999999999988 668888888777766543
No 99
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-35 Score=292.55 Aligned_cols=178 Identities=22% Similarity=0.262 Sum_probs=145.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------ceeeecCCccccCCCCHHHHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------NRCDISQHDVHIGEMTVRETLAF 236 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------~~~~v~q~d~~~~~lTV~E~l~f 236 (521)
+.+|+||||+|.+|++++|+||||||||||+++|+|+++|+.+ ..+|++|+..+++.+||+||+.+
T Consensus 25 ~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~ 104 (257)
T PRK11247 25 RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGL 104 (257)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHh
Confidence 3599999999999999999999999999999999999887532 13688998888888999999987
Q ss_pred HHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHH
Q 044321 237 SARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQR 316 (521)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqr 316 (521)
.... . ....+..+++.+||.+..+..++ .||||||
T Consensus 105 ~~~~-----~-----------------------------------~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGqk 139 (257)
T PRK11247 105 GLKG-----Q-----------------------------------WRDAALQALAAVGLADRANEWPA-----ALSGGQK 139 (257)
T ss_pred cccc-----h-----------------------------------HHHHHHHHHHHcCChhHhcCChh-----hCCHHHH
Confidence 4210 0 00124567889999877666554 5999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHh
Q 044321 317 KRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPRE 393 (521)
Q Consensus 317 QRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~ 393 (521)
|||+||+||+.+|++|||||||+++|......+.+++.+. .+.+||+++|+...+..+||+|++|++|++++.|+.+
T Consensus 140 qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 140 QRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999999888777776665432 3456666778888888999999999999999988754
No 100
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=8.2e-35 Score=329.63 Aligned_cols=245 Identities=20% Similarity=0.207 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCC-CCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGI-SLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLN 162 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~ 162 (521)
.++.+..++|+.++++.+++............... ......|+|+|++|.+..
T Consensus 436 ~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~-------------------------- 489 (710)
T TIGR03796 436 LQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSP-------------------------- 489 (710)
T ss_pred HHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCC--------------------------
Confidence 56778889999999887665210000000000000 111236999999998731
Q ss_pred cccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCcc
Q 044321 163 ILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDV 223 (521)
Q Consensus 163 ~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~ 223 (521)
..+.+|+|+||+|++|+.++|+||||||||||+++|+|+++|+.+ ..+||+|++.
T Consensus 490 ------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~ 563 (710)
T TIGR03796 490 ------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIF 563 (710)
T ss_pred ------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCCh
Confidence 123599999999999999999999999999999999999988642 1279999876
Q ss_pred ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccc
Q 044321 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMV 303 (521)
Q Consensus 224 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 303 (521)
+| +.|++|||.++. |+.+.+.+.++....+ .++.+. .++...||.+
T Consensus 564 lf-~gTi~eNi~l~~-------------------------~~~~~~~i~~al~~~~------l~~~i~--~lp~gl~t~i 609 (710)
T TIGR03796 564 LF-EGTVRDNLTLWD-------------------------PTIPDADLVRACKDAA------IHDVIT--SRPGGYDAEL 609 (710)
T ss_pred hh-hccHHHHhhCCC-------------------------CCCCHHHHHHHHHHhC------CHHHHH--hCcCccccee
Confidence 55 679999998742 1111122222211111 111221 3677889999
Q ss_pred cCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 304 GDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 304 g~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
|+ .+.+||||||||++|||||+.+|++|||||||+++|....+.+.+.+...+.|+|+++ |.. .....||+|++|++
T Consensus 610 ~e-~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~Iiit-Hrl-~~i~~~D~Iivl~~ 686 (710)
T TIGR03796 610 AE-GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVA-HRL-STIRDCDEIIVLER 686 (710)
T ss_pred cc-CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEe-cCH-HHHHhCCEEEEEeC
Confidence 86 4578999999999999999999999999999999999888888777766556666654 544 45567999999999
Q ss_pred CEEEEecCHhHHHH
Q 044321 384 GHIVYQGPREYVLE 397 (521)
Q Consensus 384 G~iv~~G~~~~v~~ 397 (521)
|++++.|+++++++
T Consensus 687 G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 687 GKVVQRGTHEELWA 700 (710)
T ss_pred CEEEEecCHHHHHH
Confidence 99999999999864
No 101
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.9e-35 Score=293.98 Aligned_cols=198 Identities=24% Similarity=0.320 Sum_probs=154.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCc-cccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHD-VHIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d-~~~~~lTV 230 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+. ..++.+||
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv 99 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATV 99 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccH
Confidence 3599999999999999999999999999999999999887532 126888876 35677899
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
.||+.+.....+... .+....++++++.+||.+..++.++ .
T Consensus 100 ~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~-----~ 140 (279)
T PRK13635 100 QDDVAFGLENIGVPR----------------------------------EEMVERVDQALRQVGMEDFLNREPH-----R 140 (279)
T ss_pred HHHHhhhHhhCCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCcc-----c
Confidence 999987643221100 0112245778899999887777665 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++|++++|+.+++. .||+|++|++|+++
T Consensus 141 LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~ 219 (279)
T PRK13635 141 LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEIL 219 (279)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEE
Confidence 9999999999999999999999999999998887777776665443 2566666778877776 59999999999999
Q ss_pred EecCHhHHHH---HHHHcCCCCCC
Q 044321 388 YQGPREYVLE---FFKFMGFECPK 408 (521)
Q Consensus 388 ~~G~~~~v~~---~f~~~g~~~p~ 408 (521)
+.|+++++.. .+...++.+|.
T Consensus 220 ~~g~~~~~~~~~~~~~~~~~~~~~ 243 (279)
T PRK13635 220 EEGTPEEIFKSGHMLQEIGLDVPF 243 (279)
T ss_pred EECCHHHHhcCHHHHHHcCCCCCh
Confidence 9999988753 34445665543
No 102
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-34 Score=292.67 Aligned_cols=186 Identities=25% Similarity=0.308 Sum_probs=149.4
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCcc-ccCCCCHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDV-HIGEMTVR 231 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~-~~~~lTV~ 231 (521)
.+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+.. .+...||.
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 97 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVE 97 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHH
Confidence 599999999999999999999999999999999999877531 1267888753 34568999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGI 311 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~L 311 (521)
+|+.+.....+... .+....++.+++.+||.+..++.+. .|
T Consensus 98 ~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~L 138 (277)
T PRK13652 98 QDIAFGPINLGLDE----------------------------------ETVAHRVSSALHMLGLEELRDRVPH-----HL 138 (277)
T ss_pred HHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhHhcCCcc-----cC
Confidence 99987543221100 0111245678999999887777664 59
Q ss_pred ChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 312 SGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 312 SGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+.+++.++||+|++|++|++++
T Consensus 139 S~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~ 218 (277)
T PRK13652 139 SGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVA 218 (277)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEE
Confidence 999999999999999999999999999999887777766665432 25667777888889999999999999999999
Q ss_pred ecCHhHHH
Q 044321 389 QGPREYVL 396 (521)
Q Consensus 389 ~G~~~~v~ 396 (521)
.|+++++.
T Consensus 219 ~g~~~~~~ 226 (277)
T PRK13652 219 YGTVEEIF 226 (277)
T ss_pred ECCHHHHh
Confidence 99999885
No 103
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-34 Score=298.91 Aligned_cols=201 Identities=17% Similarity=0.187 Sum_probs=152.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCc--cccC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHD--VHIG 226 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d--~~~~ 226 (521)
..+|+||||+|++||+++|+|+||||||||+++|+|++.|..+ ..+||+|+. .+.+
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p 107 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNP 107 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCC
Confidence 5799999999999999999999999999999999999876421 126777775 4666
Q ss_pred CCCHHHHHHHHHHhc-cCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-ccccccc
Q 044321 227 EMTVRETLAFSARCQ-GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CADTMVG 304 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~-~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg 304 (521)
.+||.+++.+..... +.. ..+....+.++|+.+||.. .+++++
T Consensus 108 ~~~v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~p- 152 (327)
T PRK11308 108 RKKVGQILEEPLLINTSLS----------------------------------AAERREKALAMMAKVGLRPEHYDRYP- 152 (327)
T ss_pred ccCHHHHHHHHHHHccCCC----------------------------------HHHHHHHHHHHHHHCCCChHHhcCCC-
Confidence 778887776543321 000 0112234677899999963 556554
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
+.|||||||||+||+||+.+|++||+||||+++|......+.+++.+. .++++++++|+...+..+||+|++|
T Consensus 153 ----~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm 228 (327)
T PRK11308 153 ----HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVM 228 (327)
T ss_pred ----ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 569999999999999999999999999999988776665555544332 3566777889999999999999999
Q ss_pred eCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHHH
Q 044321 382 SNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQE 418 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~ 418 (521)
++|+|++.|+.+++. ..|.+..+..++..
T Consensus 229 ~~G~ive~g~~~~~~--------~~p~hpyt~~ll~~ 257 (327)
T PRK11308 229 YLGRCVEKGTKEQIF--------NNPRHPYTQALLSA 257 (327)
T ss_pred ECCEEEEECCHHHHh--------cCCCCHHHHHHHHh
Confidence 999999999999884 34544445555543
No 104
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-35 Score=290.69 Aligned_cols=184 Identities=25% Similarity=0.354 Sum_probs=148.4
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------ceeeecCCccccCCCCHHHHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------NRCDISQHDVHIGEMTVRETLAF 236 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------~~~~v~q~d~~~~~lTV~E~l~f 236 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+||.||+.+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~ 93 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAF 93 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHh
Confidence 4699999999999999999999999999999999999877532 13688998888888999999987
Q ss_pred HHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHH
Q 044321 237 SARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQR 316 (521)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqr 316 (521)
.....+... .+....+..+++.+||.+..++.++ .||||||
T Consensus 94 ~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~ 134 (255)
T PRK11248 94 GLQLAGVEK----------------------------------MQRLEIAHQMLKKVGLEGAEKRYIW-----QLSGGQR 134 (255)
T ss_pred HHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhhCChh-----hCCHHHH
Confidence 643221100 0011235678899999877666554 5999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEe--CCEEEEecC
Q 044321 317 KRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILIS--NGHIVYQGP 391 (521)
Q Consensus 317 QRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~--~G~iv~~G~ 391 (521)
|||+||+||+.+|++|||||||+++|......+.+++.+. .+++||+++|+...+..+||+|++|+ +|+++..++
T Consensus 135 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~ 214 (255)
T PRK11248 135 QRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLP 214 (255)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEec
Confidence 9999999999999999999999999888877777766543 35666777888889999999999998 599999887
Q ss_pred Hh
Q 044321 392 RE 393 (521)
Q Consensus 392 ~~ 393 (521)
.+
T Consensus 215 ~~ 216 (255)
T PRK11248 215 LN 216 (255)
T ss_pred CC
Confidence 54
No 105
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.1e-34 Score=289.01 Aligned_cols=187 Identities=22% Similarity=0.287 Sum_probs=148.4
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------------------ceeee
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------------------NRCDI 218 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------------------~~~~v 218 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|++.|+.+ ..+|+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v 92 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMV 92 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEE
Confidence 4699999999999999999999999999999999999876411 13678
Q ss_pred cCCccccCCCCHHHHHHHHHHh-ccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc
Q 044321 219 SQHDVHIGEMTVRETLAFSARC-QGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV 297 (521)
Q Consensus 219 ~q~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 297 (521)
+|+..+++.+|+.||+.++... .+... .+....+.++++.+||.+
T Consensus 93 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~ 138 (252)
T TIGR03005 93 FQSFNLFPHKTVLDNVTEAPVLVLGMAR----------------------------------AEAEKRAMELLDMVGLAD 138 (252)
T ss_pred ecCcccCCCCcHHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChh
Confidence 8887788889999999875321 11100 001123456788999987
Q ss_pred cccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhh
Q 044321 298 CADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDL 374 (521)
Q Consensus 298 ~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l 374 (521)
..+..+ ..|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .++++|+++|+..++..+
T Consensus 139 ~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~ 213 (252)
T TIGR03005 139 KADHMP-----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREF 213 (252)
T ss_pred HhhcCh-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHh
Confidence 766555 459999999999999999999999999999998887766666655432 256677778888889999
Q ss_pred cCeEEEEeCCEEEEecCHhHHH
Q 044321 375 FDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 375 ~D~VivL~~G~iv~~G~~~~v~ 396 (521)
||++++|++|++++.|+.+++.
T Consensus 214 ~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 214 ADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred cCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999988773
No 106
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-34 Score=298.89 Aligned_cols=205 Identities=18% Similarity=0.209 Sum_probs=149.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC---CC------------------------ceeeecCCc-
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS---LK------------------------NRCDISQHD- 222 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~---~~------------------------~~~~v~q~d- 222 (521)
..+|+||||+|++||+++|+|+||||||||+++|+|++++. .. ..+||+|+.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 46999999999999999999999999999999999998641 11 126677765
Q ss_pred -cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccc
Q 044321 223 -VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADT 301 (521)
Q Consensus 223 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 301 (521)
.+.+.+|+.+++......... ....+....+.++|+.+||.+..+.
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~---------------------------------~~~~~~~~~~~~~L~~~gL~~~~~~ 146 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQG---------------------------------GNKKTRRQRAIDLLNQVGIPDPASR 146 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcC---------------------------------CCHHHHHHHHHHHHHHCCCCChHHH
Confidence 356667777666543321100 0001123356778999999742110
Q ss_pred cccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeE
Q 044321 302 MVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDI 378 (521)
Q Consensus 302 ~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~V 378 (521)
-+.+++.|||||||||+||+||+.+|++||+||||+++|......+.+++.++ .++++++++|+...+.++||+|
T Consensus 147 --l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri 224 (326)
T PRK11022 147 --LDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKI 224 (326)
T ss_pred --HhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 12345579999999999999999999999999999988876555555544332 3566777789988899999999
Q ss_pred EEEeCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHHH
Q 044321 379 ILISNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQE 418 (521)
Q Consensus 379 ivL~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~ 418 (521)
++|++|+|++.|+++++. ..|.+..+..++..
T Consensus 225 ~vm~~G~ive~g~~~~~~--------~~p~hpyt~~ll~~ 256 (326)
T PRK11022 225 IVMYAGQVVETGKAHDIF--------RAPRHPYTQALLRA 256 (326)
T ss_pred EEEECCEEEEECCHHHHh--------hCCCChHHHHHHHh
Confidence 999999999999999884 34555555555543
No 107
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-35 Score=288.00 Aligned_cols=188 Identities=21% Similarity=0.300 Sum_probs=148.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~lTV 230 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|++..++.+||
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSV 95 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcH
Confidence 4699999999999999999999999999999999999876421 13688888878888999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
.||+.+......... . .+....++.+++.+||.+..+..+ +.
T Consensus 96 ~enl~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 137 (241)
T PRK10895 96 YDNLMAVLQIRDDLS---------A------------------------EQREDRANELMEEFHIEHLRDSMG-----QS 137 (241)
T ss_pred HHHHhhhhhcccccC---------H------------------------HHHHHHHHHHHHHcCCHHHhhcch-----hh
Confidence 999987532210000 0 001124566888999987666555 45
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
|||||||||+||+||+.+|++|||||||+++|....+.+.+++... .+.++++++|+..++.++||++++|++|++++
T Consensus 138 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~ 217 (241)
T PRK10895 138 LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIA 217 (241)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEe
Confidence 9999999999999999999999999999999887776665555432 34566667788888999999999999999999
Q ss_pred ecCHhHHH
Q 044321 389 QGPREYVL 396 (521)
Q Consensus 389 ~G~~~~v~ 396 (521)
.|+++++.
T Consensus 218 ~~~~~~~~ 225 (241)
T PRK10895 218 HGTPTEIL 225 (241)
T ss_pred eCCHHHHh
Confidence 99988763
No 108
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=6.7e-35 Score=288.07 Aligned_cols=185 Identities=23% Similarity=0.316 Sum_probs=147.5
Q ss_pred CCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeec-CCccccCC
Q 044321 167 RKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDIS-QHDVHIGE 227 (521)
Q Consensus 167 ~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~-q~d~~~~~ 227 (521)
.++.+++|+||||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++ |.+.+++.
T Consensus 30 ~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred ccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 34556899999999999999999999999999999999999876521 125776 44556778
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCcc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI 307 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 307 (521)
+|++|++.+.....+... .+....++.+++.+||.+..++.++
T Consensus 110 ~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~--- 152 (236)
T cd03267 110 LPVIDSFYLLAAIYDLPP----------------------------------ARFKKRLDELSELLDLEELLDTPVR--- 152 (236)
T ss_pred CcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCChh---
Confidence 999999987643322110 0011234568888999888887765
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
.||||||||++||+||+.+|++|||||||+++|....+.+.+++.+. ++++|++++|+.+++.++||++++|++|
T Consensus 153 --~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G 230 (236)
T cd03267 153 --QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKG 230 (236)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCC
Confidence 49999999999999999999999999999999988888877776554 2456677788888889999999999999
Q ss_pred EEEEec
Q 044321 385 HIVYQG 390 (521)
Q Consensus 385 ~iv~~G 390 (521)
++++.|
T Consensus 231 ~i~~~g 236 (236)
T cd03267 231 RLLYDG 236 (236)
T ss_pred EEEecC
Confidence 998765
No 109
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-35 Score=287.68 Aligned_cols=185 Identities=24% Similarity=0.330 Sum_probs=144.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~lTV 230 (521)
+.+|+|+||+|++||+++|+|||||||||||++|+|+++|+.+ ..+|++|+...++.+||
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 97 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTV 97 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcH
Confidence 4699999999999999999999999999999999999876421 13688888888888999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHc-CCCccccccccCccCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKIL-GLDVCADTMVGDEILR 309 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l-gL~~~~dt~vg~~~~r 309 (521)
.+|+.++..... .. . ....+..+++.+ ++.+..++.+ .
T Consensus 98 ~~~l~~~~~~~~---~~----~-----------------------------~~~~~~~~l~~~~~l~~~~~~~~-----~ 136 (237)
T PRK11614 98 EENLAMGGFFAE---RD----Q-----------------------------FQERIKWVYELFPRLHERRIQRA-----G 136 (237)
T ss_pred HHHHHHhhhccC---hh----H-----------------------------HHHHHHHHHHHHHHHHHHHhCch-----h
Confidence 999987532100 00 0 001223445555 3555444444 4
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+.+||+++|+..++.++||++++|++|+++
T Consensus 137 ~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (237)
T PRK11614 137 TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVV 216 (237)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEE
Confidence 69999999999999999999999999999999888777776665432 3456666778888899999999999999999
Q ss_pred EecCHhHHH
Q 044321 388 YQGPREYVL 396 (521)
Q Consensus 388 ~~G~~~~v~ 396 (521)
+.|+++++.
T Consensus 217 ~~~~~~~~~ 225 (237)
T PRK11614 217 LEDTGDALL 225 (237)
T ss_pred eeCCHHHHh
Confidence 999998874
No 110
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-34 Score=291.52 Aligned_cols=198 Identities=25% Similarity=0.318 Sum_probs=153.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------------ceeeecCCcc-ccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------------NRCDISQHDV-HIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------------~~~~v~q~d~-~~~~l 228 (521)
+.+|+||||+|++||+++|+||||||||||+++|+|+++|..+ ..+|++|+.. .+..+
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAP 94 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccc
Confidence 3599999999999999999999999999999999999876421 1268888752 34457
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
||.||+.|.....+... .+....+..+++.+||.+..++.++
T Consensus 95 tv~e~i~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~---- 136 (275)
T PRK13639 95 TVEEDVAFGPLNLGLSK----------------------------------EEVEKRVKEALKAVGMEGFENKPPH---- 136 (275)
T ss_pred cHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchhhcCChh----
Confidence 99999987532111100 0111235668899999887777665
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.|||||+||++||+||+.+|++|||||||+++|......+.+++.+. .+++|++++|+...+.++||++++|++|++
T Consensus 137 -~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i 215 (275)
T PRK13639 137 -HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKI 215 (275)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 59999999999999999999999999999999888777776666543 356677778888889999999999999999
Q ss_pred EEecCHhHHH---HHHHHcCCCCC
Q 044321 387 VYQGPREYVL---EFFKFMGFECP 407 (521)
Q Consensus 387 v~~G~~~~v~---~~f~~~g~~~p 407 (521)
++.|+++++. ..++..|+..|
T Consensus 216 ~~~g~~~~~~~~~~~~~~~~~~~~ 239 (275)
T PRK13639 216 IKEGTPKEVFSDIETIRKANLRLP 239 (275)
T ss_pred EEeCCHHHHhcChHHHHhcCCCCC
Confidence 9999999875 23444455444
No 111
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-34 Score=286.57 Aligned_cols=186 Identities=25% Similarity=0.283 Sum_probs=149.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------------ceeeecCCcccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------------NRCDISQHDVHI 225 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------------~~~~v~q~d~~~ 225 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..++
T Consensus 15 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (242)
T PRK11124 15 HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLW 94 (242)
T ss_pred eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCcccc
Confidence 3699999999999999999999999999999999999876421 126788888888
Q ss_pred CCCCHHHHHHHHH-HhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 226 GEMTVRETLAFSA-RCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 226 ~~lTV~E~l~f~~-~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
+.+||.||+.+.. ...+... .+....+..+++.+||....++.+.
T Consensus 95 ~~~tv~e~i~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~ 140 (242)
T PRK11124 95 PHLTVQQNLIEAPCRVLGLSK----------------------------------DQALARAEKLLERLRLKPYADRFPL 140 (242)
T ss_pred CCCcHHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCChh
Confidence 8899999987532 1111100 0011235668889999877776654
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.+++++. .++++++++|+..++.++||++++|.
T Consensus 141 -----~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~ 215 (242)
T PRK11124 141 -----HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYME 215 (242)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 59999999999999999999999999999999988887777776543 35667777788888889999999999
Q ss_pred CCEEEEecCHhHH
Q 044321 383 NGHIVYQGPREYV 395 (521)
Q Consensus 383 ~G~iv~~G~~~~v 395 (521)
+|++++.|+++++
T Consensus 216 ~g~i~~~~~~~~~ 228 (242)
T PRK11124 216 NGHIVEQGDASCF 228 (242)
T ss_pred CCEEEEeCCHHHh
Confidence 9999999998764
No 112
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-34 Score=292.42 Aligned_cols=186 Identities=26% Similarity=0.304 Sum_probs=146.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCcc-ccCCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDV-HIGEMT 229 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~-~~~~lT 229 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+.. .++.+|
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 94 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRT 94 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccch
Confidence 3599999999999999999999999999999999999876421 1267788754 366789
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCC
Q 044321 230 VRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILR 309 (521)
Q Consensus 230 V~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 309 (521)
+.||+.|.....+... .+....+..+++.+||.+..++.++
T Consensus 95 v~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~----- 135 (274)
T PRK13644 95 VEEDLAFGPENLCLPP----------------------------------IEIRKRVDRALAEIGLEKYRHRSPK----- 135 (274)
T ss_pred HHHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCHHHhcCCcc-----
Confidence 9999987643221100 0112245678899999887776664
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.+++.++ .+++|++++|+..++ ..||+|++|++|+++
T Consensus 136 ~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~-~~~d~v~~l~~G~i~ 214 (274)
T PRK13644 136 TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEEL-HDADRIIVMDRGKIV 214 (274)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-hhCCEEEEEECCEEE
Confidence 59999999999999999999999999999998877666665555432 356666677888777 569999999999999
Q ss_pred EecCHhHHH
Q 044321 388 YQGPREYVL 396 (521)
Q Consensus 388 ~~G~~~~v~ 396 (521)
+.|+++++.
T Consensus 215 ~~g~~~~~~ 223 (274)
T PRK13644 215 LEGEPENVL 223 (274)
T ss_pred EECCHHHHh
Confidence 999998874
No 113
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.3e-34 Score=286.59 Aligned_cols=195 Identities=21% Similarity=0.288 Sum_probs=152.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~lTV 230 (521)
+++|+|+||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+...++.+||
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 94 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTV 94 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCH
Confidence 4699999999999999999999999999999999999876421 13688898888888999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
.||+.+........ +. .+ ... ...+....++++++.+|+.+..++.++ .
T Consensus 95 ~~nl~~~~~~~~~~--~~---~~---------~~~------------~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 143 (242)
T TIGR03411 95 FENLELALPRDKSV--FA---SL---------FFR------------LSAEEKDRIEEVLETIGLADEADRLAG-----L 143 (242)
T ss_pred HHHHHHhhhccccc--cc---cc---------ccc------------cHHHHHHHHHHHHHHcCCchhhcCChh-----h
Confidence 99998854311000 00 00 000 000112345678899999877776665 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
|||||||||+||+||+.+|++|||||||+++|....+.+.+++... .+.+||+++|+.+++.++||+|++|++|++++.
T Consensus 144 LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~ 223 (242)
T TIGR03411 144 LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAE 223 (242)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEee
Confidence 9999999999999999999999999999999888877777776553 235666777888889999999999999999999
Q ss_pred cCHhHHH
Q 044321 390 GPREYVL 396 (521)
Q Consensus 390 G~~~~v~ 396 (521)
|+++++.
T Consensus 224 ~~~~~~~ 230 (242)
T TIGR03411 224 GSLDQVQ 230 (242)
T ss_pred CCHHHHh
Confidence 9988763
No 114
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-34 Score=287.63 Aligned_cols=189 Identities=20% Similarity=0.244 Sum_probs=148.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CCC-------------------ceeeecCCccccC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SLK-------------------NRCDISQHDVHIG 226 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~~-------------------~~~~v~q~d~~~~ 226 (521)
..+|+||||+|++|++++|+||||||||||+++|+|+++| ..+ ..+|++|+..+++
T Consensus 16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~ 95 (250)
T PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIP 95 (250)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCC
Confidence 3699999999999999999999999999999999999864 111 1268899887788
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc----ccccc
Q 044321 227 EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV----CADTM 302 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~dt~ 302 (521)
.+||.||+.+.......... . .+....+.++++.+||.+ ..++.
T Consensus 96 ~~tv~enl~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~~ 143 (250)
T PRK14247 96 NLSIFENVALGLKLNRLVKS--------K------------------------KELQERVRWALEKAQLWDEVKDRLDAP 143 (250)
T ss_pred CCcHHHHHHHHHHhccccCC--------H------------------------HHHHHHHHHHHHHcCCCcchhhhhcCC
Confidence 99999999886432111000 0 001123466888889854 23444
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
+..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .++++++++|+..++.++||+|++|
T Consensus 144 -----~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l 218 (250)
T PRK14247 144 -----AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFL 218 (250)
T ss_pred -----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 4569999999999999999999999999999999888777777766543 3466777788888888999999999
Q ss_pred eCCEEEEecCHhHHH
Q 044321 382 SNGHIVYQGPREYVL 396 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~ 396 (521)
++|++++.|+++++.
T Consensus 219 ~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 219 YKGQIVEWGPTREVF 233 (250)
T ss_pred ECCeEEEECCHHHHH
Confidence 999999999998874
No 115
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.6e-35 Score=334.99 Aligned_cols=240 Identities=24% Similarity=0.329 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCC--CceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISL--PTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSL 161 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~ 161 (521)
...++.+..+++++++..+.. ... ...+..+ ...+|+|+|++|+|..
T Consensus 314 f~~a~~aa~~I~~~i~~~~~i-----~~~-~~~~~~~~~~~g~ief~nV~FsYPs------------------------- 362 (1228)
T KOG0055|consen 314 FAKARAAAYRIFETIDRKPSI-----DPY-SKGGRVLSSIKGEIEFRNVCFSYPS------------------------- 362 (1228)
T ss_pred HhccccchHHHHHHhcCCCCC-----Ccc-cccCCcccccccceEEEEEEecCCC-------------------------
Confidence 667788899999999988762 111 1122222 3568999999999731
Q ss_pred ccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCc
Q 044321 162 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHD 222 (521)
Q Consensus 162 ~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d 222 (521)
..+..||+|+||.|++|+.++|+|||||||||++++|.++++|+.+ ..+.|.|++
T Consensus 363 ------Rpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QeP 436 (1228)
T KOG0055|consen 363 ------RPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEP 436 (1228)
T ss_pred ------CCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeech
Confidence 1245799999999999999999999999999999999999999742 126788887
Q ss_pred cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccc
Q 044321 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTM 302 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 302 (521)
. ++..|++||+.|+. |+.+.+...+++.... ..+++. .|++.+||.
T Consensus 437 v-lF~~tI~eNI~~G~-------------------------~dat~~~i~~a~k~an-----a~~fi~---~lp~g~~T~ 482 (1228)
T KOG0055|consen 437 V-LFATTIRENIRYGK-------------------------PDATREEIEEAAKAAN-----AHDFIL---KLPDGYDTL 482 (1228)
T ss_pred h-hhcccHHHHHhcCC-------------------------CcccHHHHHHHHHHcc-----HHHHHH---hhHHhhccc
Confidence 5 55789999999872 3333333333333221 334444 488999999
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEE
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
||+..+ .|||||||||+|||||+.+|+||||||||+++|.+..+.+++.+.+. ++|+|++.| .... .+.+|+|++
T Consensus 483 vge~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaH-RLSt-IrnaD~I~v 559 (1228)
T KOG0055|consen 483 VGERGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAH-RLST-IRNADKIAV 559 (1228)
T ss_pred ccCCCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEee-ehhh-hhccCEEEE
Confidence 998554 49999999999999999999999999999999988777666665443 678877664 4444 455999999
Q ss_pred EeCCEEEEecCHhHHHH
Q 044321 381 ISNGHIVYQGPREYVLE 397 (521)
Q Consensus 381 L~~G~iv~~G~~~~v~~ 397 (521)
|++|+||+.|++++++.
T Consensus 560 ~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 560 MEEGKIVEQGTHDELIA 576 (1228)
T ss_pred EECCEEEEecCHHHHHh
Confidence 99999999999999975
No 116
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-34 Score=284.71 Aligned_cols=182 Identities=23% Similarity=0.266 Sum_probs=144.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCccccCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDVHIGE 227 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~~~~~ 227 (521)
..+|+|+||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+..+++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 101 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPD 101 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCC
Confidence 4699999999999999999999999999999999999876421 23688998888888
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCcc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI 307 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 307 (521)
+|++||+.+.....+... .+....+..+++.+||.+..++.+.
T Consensus 102 ~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~--- 144 (233)
T PRK11629 102 FTALENVAMPLLIGKKKP----------------------------------AEINSRALEMLAAVGLEHRANHRPS--- 144 (233)
T ss_pred CCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCChh---
Confidence 999999988643221100 0011235678899999877766554
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. ++++||+++|+.+++.. +|++++|++|
T Consensus 145 --~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~-~~~~~~l~~G 221 (233)
T PRK11629 145 --ELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKR-MSRQLEMRDG 221 (233)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh-hCEEEEEECC
Confidence 59999999999999999999999999999999888777777666543 35666667788777765 5799999999
Q ss_pred EEEEecCH
Q 044321 385 HIVYQGPR 392 (521)
Q Consensus 385 ~iv~~G~~ 392 (521)
++++.|+.
T Consensus 222 ~i~~~~~~ 229 (233)
T PRK11629 222 RLTAELSL 229 (233)
T ss_pred EEEEEecc
Confidence 99988863
No 117
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-34 Score=291.48 Aligned_cols=187 Identities=24% Similarity=0.285 Sum_probs=145.1
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------------ceeeecCCcc-ccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------------NRCDISQHDV-HIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------------~~~~v~q~d~-~~~~l 228 (521)
+.+|+|+||+|.+|++++|+|||||||||||++|+|+++|+.+ ..+|++|+.. .++..
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 93 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYT 93 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccc
Confidence 4699999999999999999999999999999999999877521 1256666643 23445
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
|+.+|+.+.....+... .+....++.+++.+||.+..++.++
T Consensus 94 ~~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 135 (271)
T PRK13638 94 DIDSDIAFSLRNLGVPE----------------------------------AEITRRVDEALTLVDAQHFRHQPIQ---- 135 (271)
T ss_pred cHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhcCCch----
Confidence 67777766432211100 0111235668889999877776654
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++||+++|+...+..+||++++|++|++
T Consensus 136 -~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i 214 (271)
T PRK13638 136 -CLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQI 214 (271)
T ss_pred -hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 59999999999999999999999999999999888777776666543 345677778888889999999999999999
Q ss_pred EEecCHhHHH
Q 044321 387 VYQGPREYVL 396 (521)
Q Consensus 387 v~~G~~~~v~ 396 (521)
++.|+++++.
T Consensus 215 ~~~g~~~~~~ 224 (271)
T PRK13638 215 LTHGAPGEVF 224 (271)
T ss_pred EEeCCHHHHh
Confidence 9999988774
No 118
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.8e-34 Score=288.40 Aligned_cols=187 Identities=24% Similarity=0.279 Sum_probs=149.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------------------ceeee
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------------------NRCDI 218 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------------------~~~~v 218 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+++|..+ ..+|+
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 97 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMV 97 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEE
Confidence 4699999999999999999999999999999999999876421 12788
Q ss_pred cCCccccCCCCHHHHHHHHHH-hccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc
Q 044321 219 SQHDVHIGEMTVRETLAFSAR-CQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV 297 (521)
Q Consensus 219 ~q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 297 (521)
+|+..+++.+||+||+.++.. ...... .+....+.++++.+||.+
T Consensus 98 ~q~~~l~~~~sv~enl~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~ 143 (257)
T PRK10619 98 FQHFNLWSHMTVLENVMEAPIQVLGLSK----------------------------------QEARERAVKYLAKVGIDE 143 (257)
T ss_pred ecCcccCCCCcHHHHHHHHHHHhCCCCH----------------------------------HHHHHHHHHHHHHcCCCh
Confidence 888878888999999987532 111100 011223566889999976
Q ss_pred cc-cccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhh
Q 044321 298 CA-DTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDL 374 (521)
Q Consensus 298 ~~-dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l 374 (521)
.. +..+ ..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+.+|++++|+..++..+
T Consensus 144 ~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~ 218 (257)
T PRK10619 144 RAQGKYP-----VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHV 218 (257)
T ss_pred hhhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 53 4443 469999999999999999999999999999999888777777765543 356667777888888899
Q ss_pred cCeEEEEeCCEEEEecCHhHHH
Q 044321 375 FDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 375 ~D~VivL~~G~iv~~G~~~~v~ 396 (521)
||+|++|++|++++.|+++++.
T Consensus 219 ~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 219 SSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred cCEEEEEECCEEEEeCCHHHhh
Confidence 9999999999999999988763
No 119
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=9.6e-35 Score=285.29 Aligned_cols=183 Identities=25% Similarity=0.288 Sum_probs=145.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~lTV 230 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..+++.+|+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTV 92 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcH
Confidence 4699999999999999999999999999999999999876421 13688998888888999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcC-CCccccccccCccCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILG-LDVCADTMVGDEILR 309 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg-L~~~~dt~vg~~~~r 309 (521)
.+|+.+.....+.. .....+.+++.++ +.+..++.+ +
T Consensus 93 ~~~l~~~~~~~~~~-------------------------------------~~~~~~~~l~~~~~l~~~~~~~~-----~ 130 (230)
T TIGR03410 93 EENLLTGLAALPRR-------------------------------------SRKIPDEIYELFPVLKEMLGRRG-----G 130 (230)
T ss_pred HHHHHHHHHhcCcc-------------------------------------hHHHHHHHHHHHHhHHHHhhCCh-----h
Confidence 99998764321100 0012244566665 455455554 4
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .++++++++|+.+++..+||+|++|++|++
T Consensus 131 ~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i 210 (230)
T TIGR03410 131 DLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRV 210 (230)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 59999999999999999999999999999999888777777766543 256677778888889999999999999999
Q ss_pred EEecCHhHH
Q 044321 387 VYQGPREYV 395 (521)
Q Consensus 387 v~~G~~~~v 395 (521)
++.|+.+++
T Consensus 211 ~~~~~~~~~ 219 (230)
T TIGR03410 211 VASGAGDEL 219 (230)
T ss_pred EEECCHHHc
Confidence 999998876
No 120
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.9e-35 Score=282.59 Aligned_cols=174 Identities=25% Similarity=0.310 Sum_probs=140.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------ceeeecCCcc-ccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------NRCDISQHDV-HIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------~~~~v~q~d~-~~~~lTV~E~ 233 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+.. .++.+|+.||
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~ 92 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREE 92 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHH
Confidence 4699999999999999999999999999999999999877531 1367888753 3456799999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+.+...... .....+.++++.+||.+..++.++ .|||
T Consensus 93 l~~~~~~~~--------------------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 129 (205)
T cd03226 93 LLLGLKELD--------------------------------------AGNEQAETVLKDLDLYALKERHPL-----SLSG 129 (205)
T ss_pred HhhhhhhcC--------------------------------------ccHHHHHHHHHHcCCchhcCCCch-----hCCH
Confidence 877532110 001134668899999887776665 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+.++++++|+..++.++||++++|++|++|
T Consensus 130 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 130 GQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999999988877777776543 3456666778888888999999999999975
No 121
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.1e-34 Score=328.42 Aligned_cols=241 Identities=20% Similarity=0.212 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
.++.+..++|+.++++.++|... .............|+|+|++|.+.
T Consensus 438 ~~~~~~~~~ri~~~l~~~~e~~~-----~~~~~~~~~~~~~I~~~~vsf~y~---------------------------- 484 (708)
T TIGR01193 438 LQAARVANNRLNEVYLVDSEFIN-----KKKRTELNNLNGDIVINDVSYSYG---------------------------- 484 (708)
T ss_pred HHHHHHHHHHHHHHHcCCCcccc-----cccccCCCCCCCcEEEEEEEEEcC----------------------------
Confidence 56777888999999877665210 000000111123699999999862
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccc
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVH 224 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~ 224 (521)
..+.+|+|+|++|++|+.++|+||||||||||+++|+|+++|+.+ ..+||+|++.+
T Consensus 485 -----~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l 559 (708)
T TIGR01193 485 -----YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYI 559 (708)
T ss_pred -----CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCcee
Confidence 113599999999999999999999999999999999999988632 12899998765
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
| ..|++|||.++.. ++.+.+.+.+++...+ .++.+. .++..+||.+|
T Consensus 560 f-~gTI~eNi~l~~~------------------------~~~~~~~i~~a~~~a~------l~~~i~--~lp~gldt~i~ 606 (708)
T TIGR01193 560 F-SGSILENLLLGAK------------------------ENVSQDEIWAACEIAE------IKDDIE--NMPLGYQTELS 606 (708)
T ss_pred h-hHHHHHHHhccCC------------------------CCCCHHHHHHHHHHhC------CHHHHH--hcccccCcEec
Confidence 5 5699999988521 1111122222221111 111222 36778899998
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
+ .+.+||||||||++|||||+.+|++|||||||+++|.+..+.+.+.+....+.++|+++|.. .+...||+|++|++|
T Consensus 607 e-~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~-~~~~~~D~i~~l~~G 684 (708)
T TIGR01193 607 E-EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRL-SVAKQSDKIIVLDHG 684 (708)
T ss_pred C-CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecch-HHHHcCCEEEEEECC
Confidence 6 45789999999999999999999999999999998888777776666554333444455554 456789999999999
Q ss_pred EEEEecCHhHHHH
Q 044321 385 HIVYQGPREYVLE 397 (521)
Q Consensus 385 ~iv~~G~~~~v~~ 397 (521)
++++.|+++++++
T Consensus 685 ~i~~~G~~~~L~~ 697 (708)
T TIGR01193 685 KIIEQGSHDELLD 697 (708)
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
No 122
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-34 Score=289.32 Aligned_cols=187 Identities=29% Similarity=0.422 Sum_probs=148.1
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~ 231 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+..+++.+||+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 94 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVE 94 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHH
Confidence 4699999999999999999999999999999999999876421 126888887777889999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGI 311 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~L 311 (521)
||+.+......... .+....+..+++.+||.+..++.++ .|
T Consensus 95 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~L 135 (258)
T PRK13548 95 EVVAMGRAPHGLSR----------------------------------AEDDALVAAALAQVDLAHLAGRDYP-----QL 135 (258)
T ss_pred HHHHhhhcccCCCc----------------------------------HHHHHHHHHHHHHcCCHhHhcCCcc-----cC
Confidence 99987532111000 0011234668889999877776665 59
Q ss_pred ChHHHHHHHHHHHHc------CCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 312 SGGQRKRVTTGEMLV------GPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 312 SGGqrQRvaIAraLv------~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
||||||||+||+||+ .+|++|||||||+++|....+.+.+++.+. .+.+||+++|+..++..+||+|++|+
T Consensus 136 SgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 215 (258)
T PRK13548 136 SGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLH 215 (258)
T ss_pred CHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEE
Confidence 999999999999999 599999999999998887766665555432 24566667788888999999999999
Q ss_pred CCEEEEecCHhHHH
Q 044321 383 NGHIVYQGPREYVL 396 (521)
Q Consensus 383 ~G~iv~~G~~~~v~ 396 (521)
+|++++.|+++++.
T Consensus 216 ~G~i~~~~~~~~~~ 229 (258)
T PRK13548 216 QGRLVADGTPAEVL 229 (258)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999988764
No 123
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-34 Score=288.17 Aligned_cols=202 Identities=22% Similarity=0.267 Sum_probs=152.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~lTV 230 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+..+++.+||
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 97 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTV 97 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcH
Confidence 4699999999999999999999999999999999999876521 12577998888889999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
.||+.++....... +....+. .. +... ....+....+..+++.+||.+..++.++ .
T Consensus 98 ~enl~~~~~~~~~~---~~~~~~~--------~~-~~~~-------~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 153 (255)
T PRK11300 98 IENLLVAQHQQLKT---GLFSGLL--------KT-PAFR-------RAESEALDRAATWLERVGLLEHANRQAG-----N 153 (255)
T ss_pred HHHHHHhhhccccc---hhhhhhc--------cc-cccc-------cchhHHHHHHHHHHHhCChhhhhhCChh-----h
Confidence 99999864311000 0000000 00 0000 0000112245668889999877776655 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+..++.++||++++|++|+++
T Consensus 154 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 233 (255)
T PRK11300 154 LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPL 233 (255)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 9999999999999999999999999999999988877777766543 2566777788888999999999999999999
Q ss_pred EecCHhHHH
Q 044321 388 YQGPREYVL 396 (521)
Q Consensus 388 ~~G~~~~v~ 396 (521)
+.|+++++.
T Consensus 234 ~~~~~~~~~ 242 (255)
T PRK11300 234 ANGTPEEIR 242 (255)
T ss_pred ecCCHHHHh
Confidence 999988763
No 124
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2.1e-34 Score=325.45 Aligned_cols=238 Identities=26% Similarity=0.359 Sum_probs=175.5
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCC--ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLP--TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSL 161 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~ 161 (521)
.++.+..++|+.++++.+++.. . .......+ ...|+|+|++|.|..
T Consensus 428 ~~~~~~~~~ri~~il~~~~e~~------~-~~~~~~~~~~~~~I~~~~vsf~Y~~------------------------- 475 (694)
T TIGR03375 428 YQQAKTALQSLDELMQLPVERP------E-GTRFLHRPRLQGEIEFRNVSFAYPG------------------------- 475 (694)
T ss_pred HHHHHHHHHHHHHHHcCCCCCC------C-CCCCCCCCCccceEEEEEEEEEeCC-------------------------
Confidence 6777888999999988766520 0 00011111 236999999998731
Q ss_pred ccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCc
Q 044321 162 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHD 222 (521)
Q Consensus 162 ~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d 222 (521)
....+|+|+||+|+||+.++|+||||||||||+++|+|+++|+.+ ..+||+|++
T Consensus 476 -------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~ 548 (694)
T TIGR03375 476 -------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDP 548 (694)
T ss_pred -------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCCh
Confidence 123599999999999999999999999999999999999988642 127899987
Q ss_pred cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccc
Q 044321 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTM 302 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 302 (521)
.+| ..|++|||.++.. +.+.+.+..+....+ ..+ .++ .|++..||.
T Consensus 549 ~lf-~~TI~eNi~~~~~-------------------------~~~~~~i~~a~~~~~-----l~~-~i~--~lp~gl~T~ 594 (694)
T TIGR03375 549 RLF-YGTLRDNIALGAP-------------------------YADDEEILRAAELAG-----VTE-FVR--RHPDGLDMQ 594 (694)
T ss_pred hhh-hhhHHHHHhCCCC-------------------------CCCHHHHHHHHHHcC-----hHH-HHH--hCcccccce
Confidence 655 5799999987521 112222222221111 112 222 367889999
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEE
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
+|+ .+..||||||||++|||||+.+|++|||||||+++|.+..+.+.+.+.+. +.|+|++ +|.. .+...||+|++
T Consensus 595 i~e-~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiI-tHrl-~~~~~~D~iiv 671 (694)
T TIGR03375 595 IGE-RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLV-THRT-SLLDLVDRIIV 671 (694)
T ss_pred ecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE-ecCH-HHHHhCCEEEE
Confidence 987 45679999999999999999999999999999998888777776666543 3555555 4554 45678999999
Q ss_pred EeCCEEEEecCHhHHHH
Q 044321 381 ISNGHIVYQGPREYVLE 397 (521)
Q Consensus 381 L~~G~iv~~G~~~~v~~ 397 (521)
|++|++++.|+++++++
T Consensus 672 l~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 672 MDNGRIVADGPKDQVLE 688 (694)
T ss_pred EeCCEEEeeCCHHHHHH
Confidence 99999999999999865
No 125
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-34 Score=286.17 Aligned_cols=189 Identities=22% Similarity=0.284 Sum_probs=144.0
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC-----CCC---------------------CceeeecCCcccc
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD-----SSL---------------------KNRCDISQHDVHI 225 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~-----~~~---------------------~~~~~v~q~d~~~ 225 (521)
.+|+|+||+|++|++++|+|||||||||||++|+|++. |+. ...+|++|+...+
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 99 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPF 99 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCC
Confidence 59999999999999999999999999999999999853 211 0136888887666
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccC
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGD 305 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 305 (521)
+ .||.||+.|.....+.... ......+..+++.+||.+...... +
T Consensus 100 ~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 144 (253)
T PRK14242 100 P-KSIFENVAYGLRVNGVKDK---------------------------------AYLAERVERSLRHAALWDEVKDRL-H 144 (253)
T ss_pred c-CcHHHHHHHHHHHcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhHHh-h
Confidence 6 5999999886432221000 001123455777888854221111 2
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
..++.|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+.+|++++|+..++.++||+|++|++|
T Consensus 145 ~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G 224 (253)
T PRK14242 145 ESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMG 224 (253)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECC
Confidence 344569999999999999999999999999999999888777777766543 2456666778888899999999999999
Q ss_pred EEEEecCHhHH
Q 044321 385 HIVYQGPREYV 395 (521)
Q Consensus 385 ~iv~~G~~~~v 395 (521)
++++.|+++++
T Consensus 225 ~i~~~g~~~~~ 235 (253)
T PRK14242 225 KLIEVGPTEQI 235 (253)
T ss_pred EEEEeCCHHHH
Confidence 99999998876
No 126
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-35 Score=310.93 Aligned_cols=246 Identities=24% Similarity=0.306 Sum_probs=178.8
Q ss_pred ccccCCc-----HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhh
Q 044321 77 VDVNNLG-----QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCA 151 (521)
Q Consensus 77 ~~~~~l~-----~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~ 151 (521)
.|++.|| .+...+..|+++...+.+++..-... ...-...|.++++.+||+|.++
T Consensus 272 ~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~----~~~~~~~~~~ei~~~~l~~~y~---------------- 331 (559)
T COG4988 272 QPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGE----KAEVANEPPIEISLENLSFRYP---------------- 331 (559)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcc----ccccccCCCceeeecceEEecC----------------
Confidence 6788888 66677888899888888776211000 0011123567888889999863
Q ss_pred hHHHhhhhhcccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------
Q 044321 152 NIVEGFLNSLNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------ 213 (521)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------ 213 (521)
+++++++|+||++++|+.++|+|+||||||||+++|+|+++|+.+
T Consensus 332 -----------------~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~ 394 (559)
T COG4988 332 -----------------DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWR 394 (559)
T ss_pred -----------------CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHH
Confidence 122799999999999999999999999999999999999987532
Q ss_pred -ceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHH
Q 044321 214 -NRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKI 292 (521)
Q Consensus 214 -~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~ 292 (521)
...+|+|++. ++..|++||+.++. ++.+.+....+.... .+.+.
T Consensus 395 k~i~~v~Q~p~-lf~gTireNi~l~~-------------------------~~~s~e~i~~al~~a---------~l~~~ 439 (559)
T COG4988 395 KQISWVSQNPY-LFAGTIRENILLAR-------------------------PDASDEEIIAALDQA---------GLLEF 439 (559)
T ss_pred hHeeeeCCCCc-cccccHHHHhhccC-------------------------CcCCHHHHHHHHHHh---------cHHHh
Confidence 1278888764 55689999999863 112222221111111 12233
Q ss_pred cCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHH
Q 044321 293 LGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPET 371 (521)
Q Consensus 293 lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~ 371 (521)
+.-++..||.+|+ .+++|||||+|||++||||+.+++++|+||||+++|.+..+.+.+.+.+. +.+++++++|.. ..
T Consensus 440 v~~p~GLdt~ige-~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl-~~ 517 (559)
T COG4988 440 VPKPDGLDTVIGE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRL-ED 517 (559)
T ss_pred hcCCCcccchhcc-CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcCh-HH
Confidence 3335678999996 67889999999999999999999999999999988877666655554433 234444455554 45
Q ss_pred HhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 372 YDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 372 ~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
..-+|+|++|++|++++.|.++++.
T Consensus 518 ~~~~D~I~vld~G~l~~~g~~~~L~ 542 (559)
T COG4988 518 AADADRIVVLDNGRLVEQGTHEELS 542 (559)
T ss_pred HhcCCEEEEecCCceeccCCHHHHh
Confidence 6679999999999999999999985
No 127
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-34 Score=290.36 Aligned_cols=187 Identities=22% Similarity=0.274 Sum_probs=145.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCcc-ccC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDV-HIG 226 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~-~~~ 226 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+.. .+.
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 99 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLF 99 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhc
Confidence 3599999999999999999999999999999999999876421 1267888752 334
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-cccccccC
Q 044321 227 EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CADTMVGD 305 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~ 305 (521)
..||+||+.|.....+... .+....++.+++.+||.. ..++.+
T Consensus 100 ~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-- 143 (280)
T PRK13649 100 EETVLKDVAFGPQNFGVSQ----------------------------------EEAEALAREKLALVGISESLFEKNP-- 143 (280)
T ss_pred cccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhhCCc--
Confidence 5799999887543211100 001123566788899963 455554
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+...+..+||++++|++
T Consensus 144 ---~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~ 220 (280)
T PRK13649 144 ---FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEK 220 (280)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEEC
Confidence 459999999999999999999999999999999888777777765543 355666777888888899999999999
Q ss_pred CEEEEecCHhHHH
Q 044321 384 GHIVYQGPREYVL 396 (521)
Q Consensus 384 G~iv~~G~~~~v~ 396 (521)
|++++.|+++++.
T Consensus 221 G~i~~~g~~~~~~ 233 (280)
T PRK13649 221 GKLVLSGKPKDIF 233 (280)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998874
No 128
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.2e-34 Score=281.23 Aligned_cols=177 Identities=20% Similarity=0.281 Sum_probs=141.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~~~l 228 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+..+++.+
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDR 93 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCC
Confidence 4699999999999999999999999999999999999876421 136888888888889
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
|+.||+.+.....+... .+....+.++++.+||.+..++.++
T Consensus 94 t~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 135 (214)
T cd03292 94 NVYENVAFALEVTGVPP----------------------------------REIRKRVPAALELVGLSHKHRALPA---- 135 (214)
T ss_pred cHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHhhCChh----
Confidence 99999988643221100 0011235668889999877776654
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .++++|+++|+...+.++||++++|++|++
T Consensus 136 -~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 136 -ELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred -hcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 59999999999999999999999999999999887777776665443 356677777888888899999999999974
No 129
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.9e-34 Score=282.12 Aligned_cols=180 Identities=25% Similarity=0.309 Sum_probs=147.4
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------ceeeecCCccccCCCCHHHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------NRCDISQHDVHIGEMTVRETLA 235 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------~~~~v~q~d~~~~~lTV~E~l~ 235 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|++..++.+|++||+.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~ 92 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLK 92 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHH
Confidence 4699999999999999999999999999999999999876532 2368888888888899999998
Q ss_pred HHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHH
Q 044321 236 FSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQ 315 (521)
Q Consensus 236 f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGq 315 (521)
+.....+.. ...+..+++.+||.+..+..++ .|||||
T Consensus 93 ~~~~~~~~~--------------------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 129 (223)
T TIGR03740 93 VHTTLLGLP--------------------------------------DSRIDEVLNIVDLTNTGKKKAK-----QFSLGM 129 (223)
T ss_pred HHHHHcCCC--------------------------------------HHHHHHHHHHcCCcHHHhhhHh-----hCCHHH
Confidence 754321100 0124567889999877776654 599999
Q ss_pred HHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHh
Q 044321 316 RKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPRE 393 (521)
Q Consensus 316 rQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~ 393 (521)
+||++||+||+.+|++|+|||||+++|....+.+.+++.+. .+.+|++++|+..++.++||++++|++|++++.|++.
T Consensus 130 ~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 130 KQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred HHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChh
Confidence 99999999999999999999999999888777777766543 2456666778888888999999999999999999864
No 130
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-34 Score=291.86 Aligned_cols=196 Identities=23% Similarity=0.326 Sum_probs=151.6
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCcc-ccCCC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDV-HIGEM 228 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~-~~~~l 228 (521)
.+|+||||+|++|++++|+||||||||||+++|+|+++|... ..+|++|+.. .++.+
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 100 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGA 100 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccC
Confidence 599999999999999999999999999999999999877531 1268888753 56788
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
||.||+.|.....+... .+....++.+++.+||.+..++.+
T Consensus 101 tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~----- 141 (282)
T PRK13640 101 TVGDDVAFGLENRAVPR----------------------------------PEMIKIVRDVLADVGMLDYIDSEP----- 141 (282)
T ss_pred CHHHHHHhhHHhCCCCH----------------------------------HHHHHHHHHHHHHCCChhHhcCCc-----
Confidence 99999987543221100 011224567889999987777665
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
+.|||||+|||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+...+ ..||++++|++|+
T Consensus 142 ~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~-~~~d~i~~l~~G~ 220 (282)
T PRK13640 142 ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA-NMADQVLVLDDGK 220 (282)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCE
Confidence 469999999999999999999999999999998888777776666443 255666667777777 5899999999999
Q ss_pred EEEecCHhHHHH---HHHHcCCCCC
Q 044321 386 IVYQGPREYVLE---FFKFMGFECP 407 (521)
Q Consensus 386 iv~~G~~~~v~~---~f~~~g~~~p 407 (521)
+++.|+++++.. ..+..|+..|
T Consensus 221 i~~~g~~~~~~~~~~~~~~~~~~~~ 245 (282)
T PRK13640 221 LLAQGSPVEIFSKVEMLKEIGLDIP 245 (282)
T ss_pred EEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 999999988753 2334444433
No 131
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.4e-34 Score=281.00 Aligned_cols=176 Identities=27% Similarity=0.361 Sum_probs=140.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~~~l 228 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..+++.+
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 94 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDR 94 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCC
Confidence 4699999999999999999999999999999999999876421 126888888778889
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
|+.||+.+.....+... ......+..+++.+||.+..++.+.
T Consensus 95 tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 136 (214)
T TIGR02673 95 TVYENVALPLEVRGKKE----------------------------------REIQRRVGAALRQVGLEHKADAFPE---- 136 (214)
T ss_pred cHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCChh----
Confidence 99999988643221100 0011235678899999876666654
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+.++++++|+..++..+||++++|++|+
T Consensus 137 -~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 137 -QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred -hCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 59999999999999999999999999999999888777777766543 35566777788889999999999999985
No 132
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-34 Score=284.44 Aligned_cols=182 Identities=22% Similarity=0.315 Sum_probs=143.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~ 231 (521)
+.+|+|+||+|.+|++++|+||||||||||+++|+|+++|..+ ..+|++|+..+++ .||.
T Consensus 16 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~ 94 (241)
T PRK14250 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVK 94 (241)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHH
Confidence 3599999999999999999999999999999999999876521 1267777765554 6888
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCccCCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDEILRG 310 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~~r~ 310 (521)
||+.+...... . ....+..+++.+||. +..++.+ ..
T Consensus 95 e~l~~~~~~~~--~------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~~ 131 (241)
T PRK14250 95 DNIEYGPMLKG--E------------------------------------KNVDVEYYLSIVGLNKEYATRDV-----KN 131 (241)
T ss_pred HHHhcchhhcC--c------------------------------------HHHHHHHHHHHcCCCHHHhhCCc-----cc
Confidence 88766422100 0 011245678889996 4455544 46
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
|||||||||+||+||+.+|++|||||||+++|....+.+.+++... .+++||+++|+.+++.++||+|++|++|+++
T Consensus 132 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 211 (241)
T PRK14250 132 LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILV 211 (241)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEE
Confidence 9999999999999999999999999999998887777766665443 2556667778888889999999999999999
Q ss_pred EecCHhHHH
Q 044321 388 YQGPREYVL 396 (521)
Q Consensus 388 ~~G~~~~v~ 396 (521)
+.|+++++.
T Consensus 212 ~~~~~~~~~ 220 (241)
T PRK14250 212 EYAKTYDFF 220 (241)
T ss_pred EeCCHHHHh
Confidence 999988773
No 133
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-34 Score=287.75 Aligned_cols=189 Identities=25% Similarity=0.363 Sum_probs=150.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~ 231 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+...++.+|+.
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 94 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVR 94 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHH
Confidence 4699999999999999999999999999999999999876421 137888887777888999
Q ss_pred HHHHHHHHh-ccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 232 ETLAFSARC-QGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 232 E~l~f~~~~-~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
||+.++... ..... ... ......++.+++.+||.+..++.++ .
T Consensus 95 ~~i~~~~~~~~~~~~-------------------~~~------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 138 (255)
T PRK11231 95 ELVAYGRSPWLSLWG-------------------RLS------------AEDNARVNQAMEQTRINHLADRRLT-----D 138 (255)
T ss_pred HHHHhccchhhhhcc-------------------CCC------------HHHHHHHHHHHHHcCCHHHHcCCcc-----c
Confidence 999875210 00000 000 0011235668889999877776654 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
|||||+|||+||+||+.+|++|||||||+++|....+.+.+++... .++++++++|+..++.++||++++|++|++++
T Consensus 139 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 218 (255)
T PRK11231 139 LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMA 218 (255)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEE
Confidence 9999999999999999999999999999999988888777776543 35667777888888999999999999999999
Q ss_pred ecCHhHH
Q 044321 389 QGPREYV 395 (521)
Q Consensus 389 ~G~~~~v 395 (521)
.|+.+++
T Consensus 219 ~~~~~~~ 225 (255)
T PRK11231 219 QGTPEEV 225 (255)
T ss_pred EcCHHHh
Confidence 9998776
No 134
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-34 Score=289.08 Aligned_cols=186 Identities=26% Similarity=0.328 Sum_probs=146.1
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCcc-ccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDV-HIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~-~~~~lTV 230 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+.. .++.+||
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv 101 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATV 101 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccH
Confidence 3699999999999999999999999999999999999876421 1268888753 5677899
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
+||+.+.....+... .+....+.++++.+||.+..++.+. .
T Consensus 102 ~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 142 (271)
T PRK13632 102 EDDIAFGLENKKVPP----------------------------------KKMKDIIDDLAKKVGMEDYLDKEPQ-----N 142 (271)
T ss_pred HHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHhhCCcc-----c
Confidence 999987643211100 0011245678899999877776664 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
||||||||++||+||+.+|++|||||||+++|....+.+.+++.+. +++++++++|+..++. .||++++|++|+++
T Consensus 143 LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~ 221 (271)
T PRK13632 143 LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLI 221 (271)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEE
Confidence 9999999999999999999999999999998887777666666543 3355666667666664 79999999999999
Q ss_pred EecCHhHHH
Q 044321 388 YQGPREYVL 396 (521)
Q Consensus 388 ~~G~~~~v~ 396 (521)
+.|+.+++.
T Consensus 222 ~~g~~~~~~ 230 (271)
T PRK13632 222 AQGKPKEIL 230 (271)
T ss_pred EecCHHHHh
Confidence 999988764
No 135
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-34 Score=285.24 Aligned_cols=191 Identities=20% Similarity=0.223 Sum_probs=145.4
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC--CC---C---------------------CceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD--SS---L---------------------KNRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~--~~---~---------------------~~~~~v~q~d~~ 224 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++ |. . ...+|++|+...
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNP 96 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCC
Confidence 369999999999999999999999999999999999875 21 1 013688888888
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++.+|+.||+.+.....+.... .+....++++++.+|+........
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 142 (252)
T PRK14256 97 FPAMSIYDNVIAGYKLNGRVNR---------------------------------SEADEIVESSLKRVALWDEVKDRL- 142 (252)
T ss_pred CCcCcHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhHHh-
Confidence 8889999999875432110000 001123456788888854211111
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+..+..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. ..++||+++|+.+++.++||++++|++
T Consensus 143 ~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~ 222 (252)
T PRK14256 143 KSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYM 222 (252)
T ss_pred hCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEEC
Confidence 1234569999999999999999999999999999998887776666655443 235667777888889999999999999
Q ss_pred CEEEEecCHhHH
Q 044321 384 GHIVYQGPREYV 395 (521)
Q Consensus 384 G~iv~~G~~~~v 395 (521)
|++++.|+++++
T Consensus 223 G~i~~~~~~~~~ 234 (252)
T PRK14256 223 GDLVECGETKKI 234 (252)
T ss_pred CEEEEeCCHHHH
Confidence 999999998877
No 136
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-34 Score=290.13 Aligned_cols=198 Identities=24% Similarity=0.317 Sum_probs=151.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCcc-ccCCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDV-HIGEMT 229 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~-~~~~lT 229 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|++. .+...|
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 102 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATI 102 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhcccc
Confidence 4699999999999999999999999999999999999887521 1267777653 233568
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCC
Q 044321 230 VRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILR 309 (521)
Q Consensus 230 V~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 309 (521)
|.+++.|.....+... .+....++++++.+||....++.++
T Consensus 103 v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~----- 143 (280)
T PRK13633 103 VEEDVAFGPENLGIPP----------------------------------EEIRERVDESLKKVGMYEYRRHAPH----- 143 (280)
T ss_pred HHHHHHhhHhhcCCCH----------------------------------HHHHHHHHHHHHHCCCHhHhhCCcc-----
Confidence 8888877643221100 0112345778999999887777665
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.|||||||||+||++|+.+|++|||||||+++|......+.+++.+. .+++|++++|+..++.. ||++++|++|++
T Consensus 144 ~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i 222 (280)
T PRK13633 144 LLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKV 222 (280)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEE
Confidence 59999999999999999999999999999998887777776666543 25566667787777765 999999999999
Q ss_pred EEecCHhHHHH---HHHHcCCCCCC
Q 044321 387 VYQGPREYVLE---FFKFMGFECPK 408 (521)
Q Consensus 387 v~~G~~~~v~~---~f~~~g~~~p~ 408 (521)
++.|+++++.. .+...++..|.
T Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (280)
T PRK13633 223 VMEGTPKEIFKEVEMMKKIGLDVPQ 247 (280)
T ss_pred EEecCHHHHhcChHHHHhcCCCCCc
Confidence 99999988753 23344555443
No 137
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.5e-34 Score=325.53 Aligned_cols=237 Identities=21% Similarity=0.286 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCC---ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhh
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLP---TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNS 160 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~ 160 (521)
.++.....+|+.++++.+++. +..+...| ...|+|+|++|.++.
T Consensus 444 ~~~~~~a~~ri~~~l~~~~~~---------~~~~~~~~~~~~~~I~~~nVsf~Y~~------------------------ 490 (711)
T TIGR00958 444 MMQAVGASEKVFEYLDRKPNI---------PLTGTLAPLNLEGLIEFQDVSFSYPN------------------------ 490 (711)
T ss_pred HHHHHHHHHHHHHHhCCCCCC---------CCCCCCCCCCCCCeEEEEEEEEECCC------------------------
Confidence 566677888888888765541 00111111 236999999998731
Q ss_pred cccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCC
Q 044321 161 LNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQH 221 (521)
Q Consensus 161 ~~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~ 221 (521)
..++.+|+|+||+|+||+.++|+||||||||||+++|+|+++|+.+ ..+||+|+
T Consensus 491 -------~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 563 (711)
T TIGR00958 491 -------RPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQE 563 (711)
T ss_pred -------CCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecC
Confidence 0124699999999999999999999999999999999999988632 12789997
Q ss_pred ccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccc
Q 044321 222 DVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADT 301 (521)
Q Consensus 222 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 301 (521)
+.+ +..|++|||.++.. +.+.+...++....+ .++.++ .+++..||
T Consensus 564 ~~l-F~gTIreNI~~g~~-------------------------~~~~e~i~~al~~a~------l~~~i~--~lp~GldT 609 (711)
T TIGR00958 564 PVL-FSGSVRENIAYGLT-------------------------DTPDEEIMAAAKAAN------AHDFIM--EFPNGYDT 609 (711)
T ss_pred ccc-cccCHHHHHhcCCC-------------------------CCCHHHHHHHHHHcC------CHHHHH--hCCCccCC
Confidence 655 46899999988631 011111111111110 111222 36677899
Q ss_pred cccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEE
Q 044321 302 MVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 302 ~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
.+|+ ....||||||||++|||||+++|+||||||||+++|.+..+.+.+.. ...+.++|+++|.. .....||+|++|
T Consensus 610 ~ige-~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~-~~~~~TvIiItHrl-~~i~~aD~IivL 686 (711)
T TIGR00958 610 EVGE-KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESR-SRASRTVLLIAHRL-STVERADQILVL 686 (711)
T ss_pred cccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhh-ccCCCeEEEEeccH-HHHHhCCEEEEE
Confidence 9986 45679999999999999999999999999999999999888888732 23334444455555 456779999999
Q ss_pred eCCEEEEecCHhHHHH
Q 044321 382 SNGHIVYQGPREYVLE 397 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~~ 397 (521)
++|+|++.|+++++.+
T Consensus 687 ~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 687 KKGSVVEMGTHKQLME 702 (711)
T ss_pred ECCEEEEeeCHHHHHh
Confidence 9999999999999864
No 138
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-34 Score=285.28 Aligned_cols=189 Identities=20% Similarity=0.258 Sum_probs=146.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC-----CC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS-----LK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~-----~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|+ .+ ..+|++|+...
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (253)
T PRK14267 17 NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNP 96 (253)
T ss_pred eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCcc
Confidence 36999999999999999999999999999999999998752 10 12678888878
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc----ccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV----CAD 300 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 300 (521)
++.+||.||+.+........... .+....++.+++.+||.. ..+
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 144 (253)
T PRK14267 97 FPHLTIYDNVAIGVKLNGLVKSK--------------------------------KELDERVEWALKKAALWDEVKDRLN 144 (253)
T ss_pred CCCCcHHHHHHHHHHhcCccCCH--------------------------------HHHHHHHHHHHHHcCCccchhhhhc
Confidence 88899999998764321110000 001123456778888743 233
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEE
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
+ .+..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+.++|+++|+...+..+||+|+
T Consensus 145 ~-----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~ 219 (253)
T PRK14267 145 D-----YPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVA 219 (253)
T ss_pred c-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEE
Confidence 3 34569999999999999999999999999999998887777776666543 23566777788888899999999
Q ss_pred EEeCCEEEEecCHhHHH
Q 044321 380 LISNGHIVYQGPREYVL 396 (521)
Q Consensus 380 vL~~G~iv~~G~~~~v~ 396 (521)
+|++|++++.|+++++.
T Consensus 220 ~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 220 FLYLGKLIEVGPTRKVF 236 (253)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988774
No 139
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-34 Score=286.36 Aligned_cols=191 Identities=18% Similarity=0.209 Sum_probs=146.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CCC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SLK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+||||+|.+|++++|+|||||||||||++|+|++.| ..+ ..+|++|+..+
T Consensus 33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 112 (267)
T PRK14237 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNP 112 (267)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcc
Confidence 3699999999999999999999999999999999999853 211 12778887766
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++ .||+||+.++....+.... .+....+..+++.++|.+..+...
T Consensus 113 ~~-~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~i~~~~- 157 (267)
T PRK14237 113 FA-KSIYENITFALERAGVKDK---------------------------------KVLDEIVETSLKQAALWDQVKDDL- 157 (267)
T ss_pred cc-ccHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCCchhhhhh-
Confidence 66 6999999876432111000 001123456788888854322222
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+..++.|||||||||+|||||+.+|++|||||||+++|......+.+++.+. .+++||+++|+.+++.++||++++|++
T Consensus 158 ~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~ 237 (267)
T PRK14237 158 HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYL 237 (267)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEEC
Confidence 2345679999999999999999999999999999999888777777666543 245667777888889999999999999
Q ss_pred CEEEEecCHhHHH
Q 044321 384 GHIVYQGPREYVL 396 (521)
Q Consensus 384 G~iv~~G~~~~v~ 396 (521)
|++++.|+++++.
T Consensus 238 G~i~~~g~~~~~~ 250 (267)
T PRK14237 238 GDLIEYDKTRNIF 250 (267)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998873
No 140
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-34 Score=283.25 Aligned_cols=191 Identities=19% Similarity=0.226 Sum_probs=145.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCC---CCCC--CC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGK---LDSS--LK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~---l~~~--~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+ +++. .+ ..+|++|+...
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 95 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNP 95 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCcc
Confidence 4699999999999999999999999999999999996 2321 10 13778887766
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++ .|+.||+.+.....+.... ......++++++.+||.+......
T Consensus 96 ~~-~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 140 (250)
T PRK14245 96 FP-KSIFENVAYGLRVNGVKDN---------------------------------AFIRQRVEETLKGAALWDEVKDKL- 140 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCCCcH---------------------------------HHHHHHHHHHHHHcCCCcchhhhh-
Confidence 65 6999999876432211000 001123466788888864321111
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+..+..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+...+.++||+|++|++
T Consensus 141 ~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~ 220 (250)
T PRK14245 141 KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYM 220 (250)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEEC
Confidence 1234569999999999999999999999999999999888777777766543 235666677888888999999999999
Q ss_pred CEEEEecCHhHHH
Q 044321 384 GHIVYQGPREYVL 396 (521)
Q Consensus 384 G~iv~~G~~~~v~ 396 (521)
|++++.|+++++.
T Consensus 221 G~~~~~~~~~~~~ 233 (250)
T PRK14245 221 GEMVEYDDTKKIF 233 (250)
T ss_pred CEEEEECCHHHHh
Confidence 9999999999884
No 141
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-34 Score=283.00 Aligned_cols=187 Identities=26% Similarity=0.340 Sum_probs=150.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~ 233 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|.++|..+ ..+|++|+...++.+|+.+|
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n 92 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFEN 92 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHH
Confidence 4699999999999999999999999999999999999887531 23788888888888999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+.+.....+... ......++.+++.+||.+..++.+. .|||
T Consensus 93 l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~ 133 (232)
T cd03300 93 IAFGLRLKKLPK----------------------------------AEIKERVAEALDLVQLEGYANRKPS-----QLSG 133 (232)
T ss_pred HHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCChh-----hCCH
Confidence 987643221100 0011234668899999887776654 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||||+||+||+.+|+++||||||+++|....+.+.+++... .+.+|++++|+..++.++||++++|++|++++.|
T Consensus 134 G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~ 213 (232)
T cd03300 134 GQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIG 213 (232)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999998888777776666443 2456666677788889999999999999999999
Q ss_pred CHhHHH
Q 044321 391 PREYVL 396 (521)
Q Consensus 391 ~~~~v~ 396 (521)
+.+++.
T Consensus 214 ~~~~~~ 219 (232)
T cd03300 214 TPEEIY 219 (232)
T ss_pred CHHHHH
Confidence 887763
No 142
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=2.6e-34 Score=281.35 Aligned_cols=182 Identities=25% Similarity=0.281 Sum_probs=139.7
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCc--cccCC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHD--VHIGE 227 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d--~~~~~ 227 (521)
.+|+|+||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+. .+++.
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 98 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPR 98 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCc
Confidence 699999999999999999999999999999999999876421 136788876 35567
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDE 306 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~ 306 (521)
+||++|+.+.....+.... + .........+++.++|. ...+..++
T Consensus 99 ~tv~~nl~~~~~~~~~~~~----------------------~----------~~~~~~~~~~l~~~~l~~~~~~~~~~-- 144 (228)
T cd03257 99 MTIGEQIAEPLRIHGKLSK----------------------K----------EARKEAVLLLLVGVGLPEEVLNRYPH-- 144 (228)
T ss_pred CCHHHHHHHHHHhccCCcH----------------------H----------HHHHHHHHHHHHHCCCChhHhhCCch--
Confidence 9999999876432211000 0 00011124578888985 45565554
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+...+..+||+|++|++
T Consensus 145 ---~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 221 (228)
T cd03257 145 ---ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYA 221 (228)
T ss_pred ---hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeC
Confidence 59999999999999999999999999999998887777666665443 155666677888888889999999999
Q ss_pred CEEEEec
Q 044321 384 GHIVYQG 390 (521)
Q Consensus 384 G~iv~~G 390 (521)
|+++..|
T Consensus 222 G~i~~~g 228 (228)
T cd03257 222 GKIVEEG 228 (228)
T ss_pred CEEEecC
Confidence 9998765
No 143
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-34 Score=302.93 Aligned_cols=189 Identities=22% Similarity=0.294 Sum_probs=153.8
Q ss_pred eeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCccccCCCCHHH
Q 044321 176 DVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 176 dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~~~~~lTV~E 232 (521)
||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+||+|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 95 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRG 95 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHH
Confidence 89999999999999999999999999999999876421 1368899988899999999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.|+.... ....++.+++.+||.+..++.++ .||
T Consensus 96 nl~~~~~~~----------------------------------------~~~~~~~~l~~~gl~~~~~~~~~-----~LS 130 (352)
T PRK11144 96 NLRYGMAKS----------------------------------------MVAQFDKIVALLGIEPLLDRYPG-----SLS 130 (352)
T ss_pred HHHhhhhhh----------------------------------------hHHHHHHHHHHcCCchhhhCCcc-----cCC
Confidence 998753100 01134668899999887776664 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
|||||||+|||||+.+|++|||||||+++|....+.+.+++++. .++++|+++|+..++..+||+|++|++|+++..
T Consensus 131 gGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~ 210 (352)
T PRK11144 131 GGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAF 210 (352)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEe
Confidence 99999999999999999999999999998887766666555432 245667778888899999999999999999999
Q ss_pred cCHhHHHHHHHHcCCCCCCCCCHHHHHH
Q 044321 390 GPREYVLEFFKFMGFECPKRKGVADFLQ 417 (521)
Q Consensus 390 G~~~~v~~~f~~~g~~~p~~~~~adfl~ 417 (521)
|+++++. ..|....++.|+.
T Consensus 211 g~~~~i~--------~~p~~~~~~~~~g 230 (352)
T PRK11144 211 GPLEEVW--------ASSAMRPWLPKEE 230 (352)
T ss_pred cCHHHHH--------hCcchhhhhcccC
Confidence 9999884 4565555666653
No 144
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-34 Score=288.96 Aligned_cols=190 Identities=23% Similarity=0.293 Sum_probs=149.1
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~ 231 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+..+++.+|+.
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 103 (265)
T PRK10575 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVR 103 (265)
T ss_pred EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHH
Confidence 3699999999999999999999999999999999999876421 137888887778889999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGI 311 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~L 311 (521)
||+.+...... .. . ... . ......++.+++.+||.+..++.++ .|
T Consensus 104 e~l~~~~~~~~-~~-~---------------~~~-~------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~L 148 (265)
T PRK10575 104 ELVAIGRYPWH-GA-L---------------GRF-G------------AADREKVEEAISLVGLKPLAHRLVD-----SL 148 (265)
T ss_pred HHHHhCccccc-cc-c---------------cCC-C------------HHHHHHHHHHHHHcCCHHHhcCCcc-----cC
Confidence 99987531100 00 0 000 0 0011235678899999877776665 59
Q ss_pred ChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 312 SGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 312 SGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+.+++.++||+|++|++|++++
T Consensus 149 SgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~ 228 (265)
T PRK10575 149 SGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIA 228 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 999999999999999999999999999999888776666655443 25667777888888999999999999999999
Q ss_pred ecCHhHH
Q 044321 389 QGPREYV 395 (521)
Q Consensus 389 ~G~~~~v 395 (521)
.|+.+++
T Consensus 229 ~~~~~~~ 235 (265)
T PRK10575 229 QGTPAEL 235 (265)
T ss_pred ecCHHHh
Confidence 9998776
No 145
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=3.4e-34 Score=279.55 Aligned_cols=177 Identities=21% Similarity=0.256 Sum_probs=138.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCccccCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDVHIGE 227 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~~~~~ 227 (521)
+++|+|+||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+..+++.
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 97 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPD 97 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCC
Confidence 4699999999999999999999999999999999999876421 13688888777888
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCcc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI 307 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 307 (521)
+|++||+.+......... .+....+.++++.+||.+..++.++
T Consensus 98 ~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 140 (221)
T TIGR02211 98 FTALENVAMPLLIGKKSV----------------------------------KEAKERAYEMLEKVGLEHRINHRPS--- 140 (221)
T ss_pred CcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCChh---
Confidence 999999987543211100 0011234568889999877766554
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+.+||+++|+...+. .+|+|++|++|
T Consensus 141 --~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~-~~d~v~~l~~G 217 (221)
T TIGR02211 141 --ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAK-KLDRVLEMKDG 217 (221)
T ss_pred --hCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh-hcCEEEEEeCC
Confidence 59999999999999999999999999999998887777666665432 2455666677777664 58999999999
Q ss_pred EEE
Q 044321 385 HIV 387 (521)
Q Consensus 385 ~iv 387 (521)
+++
T Consensus 218 ~i~ 220 (221)
T TIGR02211 218 QLF 220 (221)
T ss_pred Eec
Confidence 986
No 146
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-34 Score=285.70 Aligned_cols=185 Identities=17% Similarity=0.226 Sum_probs=143.8
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC--C---CCC---------------------ceeeecCCcccc
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD--S---SLK---------------------NRCDISQHDVHI 225 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~--~---~~~---------------------~~~~v~q~d~~~ 225 (521)
.+|+|+||+|++|++++|+||||||||||+++|+|++. | +.+ ..+|++|+...+
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 106 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPF 106 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccC
Confidence 59999999999999999999999999999999999975 2 110 126788877666
Q ss_pred CCCCHHHHHHHHHHhc-cCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc----ccc
Q 044321 226 GEMTVRETLAFSARCQ-GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV----CAD 300 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~-~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 300 (521)
+ +|+++|+.+..... +... .+....++++++.+|+.. ..+
T Consensus 107 ~-~tv~~nl~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 151 (260)
T PRK10744 107 P-MSIYDNIAFGVRLFEKLSR----------------------------------AEMDERVEWALTKAALWNEVKDKLH 151 (260)
T ss_pred c-CcHHHHHhhhHhhcCCCCH----------------------------------HHHHHHHHHHHHHcCCChhhHHHHh
Confidence 6 89999998764321 1100 001123456788888742 233
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEE
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
+ .+..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+...+..+||+++
T Consensus 152 ~-----~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~ 226 (260)
T PRK10744 152 Q-----SGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTA 226 (260)
T ss_pred c-----CCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEE
Confidence 3 34569999999999999999999999999999998888777776666543 34566777788888889999999
Q ss_pred EEeCCEEEEecCHhHHH
Q 044321 380 LISNGHIVYQGPREYVL 396 (521)
Q Consensus 380 vL~~G~iv~~G~~~~v~ 396 (521)
+|++|++++.|+.+++.
T Consensus 227 ~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 227 FMYLGELIEFGNTDTIF 243 (260)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988774
No 147
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=3e-34 Score=283.77 Aligned_cols=195 Identities=22% Similarity=0.241 Sum_probs=147.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC--CCCCC--------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL--DSSLK--------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l--~~~~~--------------------~~~~v~q~d~~~~~l 228 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|++ +|+.+ ..+|++|+...++.+
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGV 92 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCc
Confidence 46999999999999999999999999999999999984 34311 126788988888899
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCcc
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDEI 307 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~ 307 (521)
|+.+++.+.......... ....+ ..+....+..+++.+||. ...++.++
T Consensus 93 t~~~~~~~~~~~~~~~~~----------------~~~~~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 142 (243)
T TIGR01978 93 SNLEFLRSALNARRSARG----------------EEPLD-----------LLDFLKLLKAKLALLGMDEEFLNRSVN--- 142 (243)
T ss_pred CHHHHHHHHHHHhhcccc----------------ccccc-----------HHHHHHHHHHHHHHcCCchhhcccccc---
Confidence 999999876432110000 00000 001122456788999997 35555443
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhh-cCeEEEEeCC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDL-FDDIILISNG 384 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l-~D~VivL~~G 384 (521)
..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+...+..+ ||++++|++|
T Consensus 143 -~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G 221 (243)
T TIGR01978 143 -EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDG 221 (243)
T ss_pred -cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCC
Confidence 149999999999999999999999999999998887777776666543 345666677888888888 8999999999
Q ss_pred EEEEecCHhHHH
Q 044321 385 HIVYQGPREYVL 396 (521)
Q Consensus 385 ~iv~~G~~~~v~ 396 (521)
++++.|+++++.
T Consensus 222 ~i~~~g~~~~~~ 233 (243)
T TIGR01978 222 RIVKSGDVELAK 233 (243)
T ss_pred EEEEecCHHHhc
Confidence 999999988654
No 148
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-34 Score=283.88 Aligned_cols=191 Identities=19% Similarity=0.256 Sum_probs=144.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC--CC---CC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD--SS---LK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~--~~---~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+.. |. .+ ..+|++|+...
T Consensus 18 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 97 (252)
T PRK14239 18 KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNP 97 (252)
T ss_pred eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCcc
Confidence 369999999999999999999999999999999999843 31 10 13688888766
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++ +||.||+.+.....+.... ......+..+++.+++........
T Consensus 98 ~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 142 (252)
T PRK14239 98 FP-MSIYENVVYGLRLKGIKDK---------------------------------QVLDEAVEKSLKGASIWDEVKDRL- 142 (252)
T ss_pred Cc-CcHHHHHHHHHHHcCCCcH---------------------------------HHHHHHHHHHHHHcCCchhHHHHH-
Confidence 65 8999999876432211000 001123455677777743211111
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+..+..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+.+|++++|+.+++.++||+|++|++
T Consensus 143 ~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~ 222 (252)
T PRK14239 143 HDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLD 222 (252)
T ss_pred hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEEC
Confidence 2344569999999999999999999999999999999888777777766543 235666777888889999999999999
Q ss_pred CEEEEecCHhHHH
Q 044321 384 GHIVYQGPREYVL 396 (521)
Q Consensus 384 G~iv~~G~~~~v~ 396 (521)
|++++.|+++++.
T Consensus 223 G~i~~~g~~~~~~ 235 (252)
T PRK14239 223 GDLIEYNDTKQMF 235 (252)
T ss_pred CEEEEeCCHHHHH
Confidence 9999999998873
No 149
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=3.8e-34 Score=279.77 Aligned_cols=179 Identities=21% Similarity=0.246 Sum_probs=142.1
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~~~l 228 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+..+++.+
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 94 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDR 94 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccc
Confidence 4699999999999999999999999999999999999876521 126888887777889
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
|+.||+.+.....+... .+....++.+++.+||.+..++.++
T Consensus 95 tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 136 (222)
T PRK10908 95 TVYDNVAIPLIIAGASG----------------------------------DDIRRRVSAALDKVGLLDKAKNFPI---- 136 (222)
T ss_pred cHHHHHHhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCch----
Confidence 99999987643221100 0011234567889999876666554
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .++++++++|+..++..+||+|++|++|++
T Consensus 137 -~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 215 (222)
T PRK10908 137 -QLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHL 215 (222)
T ss_pred -hCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 59999999999999999999999999999999887766666655433 356677778888889999999999999998
Q ss_pred EE
Q 044321 387 VY 388 (521)
Q Consensus 387 v~ 388 (521)
+.
T Consensus 216 ~~ 217 (222)
T PRK10908 216 HG 217 (222)
T ss_pred cc
Confidence 53
No 150
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-34 Score=286.76 Aligned_cols=196 Identities=22% Similarity=0.276 Sum_probs=149.9
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCcc-ccCCCCHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDV-HIGEMTVR 231 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~-~~~~lTV~ 231 (521)
.+|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+.. .++..|+.
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~ 102 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVK 102 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHH
Confidence 589999999999999999999999999999999999876521 1267888753 56778888
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGI 311 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~L 311 (521)
+|+.|.....+... .+....+..+++.+|+.+..++.++ .|
T Consensus 103 ~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~L 143 (269)
T PRK13648 103 YDVAFGLENHAVPY----------------------------------DEMHRRVSEALKQVDMLERADYEPN-----AL 143 (269)
T ss_pred HHHHhhHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCcc-----cC
Confidence 88877543211100 0011234668899999877776554 59
Q ss_pred ChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 312 SGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 312 SGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+..++.. ||+|++|++|++++
T Consensus 144 S~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~ 222 (269)
T PRK13648 144 SGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYK 222 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEE
Confidence 999999999999999999999999999998887777766665443 24556666777777765 99999999999999
Q ss_pred ecCHhHHHH---HHHHcCCCCC
Q 044321 389 QGPREYVLE---FFKFMGFECP 407 (521)
Q Consensus 389 ~G~~~~v~~---~f~~~g~~~p 407 (521)
.|+++++.+ .+...|+++|
T Consensus 223 ~g~~~~~~~~~~~~~~~~~~~~ 244 (269)
T PRK13648 223 EGTPTEIFDHAEELTRIGLDLP 244 (269)
T ss_pred ecCHHHHhcCHHHHHhcCCCCC
Confidence 999988742 3444455554
No 151
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-34 Score=285.06 Aligned_cols=188 Identities=19% Similarity=0.267 Sum_probs=145.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CCC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SLK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|++.| +.+ ..+|++|+...
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (258)
T PRK14241 17 FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNP 96 (258)
T ss_pred EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEcccccc
Confidence 3699999999999999999999999999999999999863 110 13678888777
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC----cccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD----VCAD 300 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 300 (521)
++.+||.||+.+.....+.... ......++.+++.+||. +..+
T Consensus 97 ~~~~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 143 (258)
T PRK14241 97 FPTMSIRDNVVAGLKLNGVRNK---------------------------------KDLDELVEKSLRGANLWNEVKDRLD 143 (258)
T ss_pred CCCCcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhhHhh
Confidence 8889999999876432111000 00112345678888874 2334
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEE
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
+. +..|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++||+++|+..++.++||+|+
T Consensus 144 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~ 218 (258)
T PRK14241 144 KP-----GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTA 218 (258)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE
Confidence 33 4569999999999999999999999999999999888777776666543 23566677788888999999999
Q ss_pred EEe------CCEEEEecCHhHHH
Q 044321 380 LIS------NGHIVYQGPREYVL 396 (521)
Q Consensus 380 vL~------~G~iv~~G~~~~v~ 396 (521)
+|+ +|++++.|+++++.
T Consensus 219 ~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 219 FFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EEecccCCCCceEEecCCHHHHH
Confidence 997 79999999998874
No 152
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=4.4e-34 Score=316.65 Aligned_cols=239 Identities=20% Similarity=0.262 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
.+..+..++|+.++++.+++.. .+....+.+...|+|+|++|.++.
T Consensus 308 ~~~~~~~~~ri~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~vsf~y~~--------------------------- 353 (582)
T PRK11176 308 FQRGMAACQTLFAILDLEQEKD-------EGKRVIERAKGDIEFRNVTFTYPG--------------------------- 353 (582)
T ss_pred HHHHHHHHHHHHHHhcCCCcCC-------CCCcCCCCCCCeEEEEEEEEecCC---------------------------
Confidence 4555667788877776544310 000011111236999999998621
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccc
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVH 224 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~ 224 (521)
+.+.+|+|+|++|++|+.++|+||||||||||+++|+|+++|+.+ ..+|++|++.+
T Consensus 354 -----~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l 428 (582)
T PRK11176 354 -----KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHL 428 (582)
T ss_pred -----CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCcee
Confidence 123599999999999999999999999999999999999988632 12799998765
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
| +.|++|||.++... +.+.+.+.++....+ .++.++ .|++..||.+|
T Consensus 429 f-~~Ti~~Ni~~~~~~------------------------~~~~~~i~~al~~~~------l~~~i~--~lp~Gldt~ig 475 (582)
T PRK11176 429 F-NDTIANNIAYARTE------------------------QYSREQIEEAARMAY------AMDFIN--KMDNGLDTVIG 475 (582)
T ss_pred e-cchHHHHHhcCCCC------------------------CCCHHHHHHHHHHhC------cHHHHH--hcccccCceeC
Confidence 5 58999999875210 011111211111111 112222 36778899999
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
+. ...||||||||++|||||+++|++|+|||||+++|.+....+.+.+... +.|+|++ +|.. ...+.||+|++|+
T Consensus 476 ~~-g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~V-tHr~-~~~~~~D~Ii~l~ 552 (582)
T PRK11176 476 EN-GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVI-AHRL-STIEKADEILVVE 552 (582)
T ss_pred CC-CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEE-ecch-HHHHhCCEEEEEE
Confidence 74 5679999999999999999999999999999998887777766665543 3455555 4554 5667899999999
Q ss_pred CCEEEEecCHhHHHH
Q 044321 383 NGHIVYQGPREYVLE 397 (521)
Q Consensus 383 ~G~iv~~G~~~~v~~ 397 (521)
+|++++.|+++++.+
T Consensus 553 ~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 553 DGEIVERGTHAELLA 567 (582)
T ss_pred CCEEEEeCCHHHHHh
Confidence 999999999998853
No 153
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-34 Score=294.95 Aligned_cols=196 Identities=17% Similarity=0.133 Sum_probs=144.5
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC----CCC-----------------------ceeeecCCc
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS----SLK-----------------------NRCDISQHD 222 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~----~~~-----------------------~~~~v~q~d 222 (521)
...+|+||||+|.+||+++|+|+||||||||+++|+|++++ +.+ ..+||+|+.
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~ 98 (330)
T PRK15093 19 WVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98 (330)
T ss_pred CEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCc
Confidence 34699999999999999999999999999999999999863 210 135778875
Q ss_pred c--ccCCCCHHHHHHHHHHhccC-chhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccc
Q 044321 223 V--HIGEMTVRETLAFSARCQGV-GSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCA 299 (521)
Q Consensus 223 ~--~~~~lTV~E~l~f~~~~~~~-~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~ 299 (521)
. +.+.+||.+++.+....... +.. .. . ..+....+.++|+.+||.+..
T Consensus 99 ~~~l~p~~tv~~~l~~~~~~~~~~~~~----------------~~--~-----------~~~~~~~~~~~L~~~gL~~~~ 149 (330)
T PRK15093 99 QSCLDPSERVGRQLMQNIPGWTYKGRW----------------WQ--R-----------FGWRKRRAIELLHRVGIKDHK 149 (330)
T ss_pred chhcCccccHHHHHHHHHHhhhccccc----------------cc--c-----------HHHHHHHHHHHHHHCCCCChH
Confidence 4 45678888887653211000 000 00 0 001123456789999997532
Q ss_pred cccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcC
Q 044321 300 DTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFD 376 (521)
Q Consensus 300 dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D 376 (521)
+ +.+.++..|||||||||+||+||+.+|++|||||||+++|......+.+++.++ .++++|+++|+...+.++||
T Consensus 150 ~--~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~d 227 (330)
T PRK15093 150 D--AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWAD 227 (330)
T ss_pred H--HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence 1 112344569999999999999999999999999999988776666555554432 25677778899999999999
Q ss_pred eEEEEeCCEEEEecCHhHHH
Q 044321 377 DIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 377 ~VivL~~G~iv~~G~~~~v~ 396 (521)
+|++|++|+|++.|+.+++.
T Consensus 228 ri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 228 KINVLYCGQTVETAPSKELV 247 (330)
T ss_pred EEEEEECCEEEEECCHHHHH
Confidence 99999999999999998874
No 154
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-34 Score=283.01 Aligned_cols=187 Identities=19% Similarity=0.246 Sum_probs=144.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CCC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SLK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|+++| ..+ ..+|++|+...
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNP 96 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCc
Confidence 3699999999999999999999999999999999998754 111 13788888776
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc----ccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV----CAD 300 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 300 (521)
++ +|+.||+.|.....+.... .+....+..+++.+||.. ..+
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 142 (251)
T PRK14270 97 FP-MSIYDNVAYGPRIHGIKDK---------------------------------KELDKIVEWALKKAALWDEVKDDLK 142 (251)
T ss_pred CC-CcHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCchhhhhHhh
Confidence 66 8999999876433221000 001123455778888742 233
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEE
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
+ .+..|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+.++++++|+..++.++||+++
T Consensus 143 ~-----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~ 217 (251)
T PRK14270 143 K-----SALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTA 217 (251)
T ss_pred C-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEE
Confidence 3 34569999999999999999999999999999998887777766666543 23566667788888899999999
Q ss_pred EEeCCEEEEecCHhHHH
Q 044321 380 LISNGHIVYQGPREYVL 396 (521)
Q Consensus 380 vL~~G~iv~~G~~~~v~ 396 (521)
+|++|++++.|+++++.
T Consensus 218 ~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 218 FFLMGDLIEFNKTEKIF 234 (251)
T ss_pred EEECCeEEEeCCHHHHh
Confidence 99999999999998873
No 155
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=4e-34 Score=285.73 Aligned_cols=189 Identities=26% Similarity=0.346 Sum_probs=150.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~ 231 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+...++.+||.
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVR 93 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHH
Confidence 4699999999999999999999999999999999999876521 136888887677789999
Q ss_pred HHHHHHHH-hccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 232 ETLAFSAR-CQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 232 E~l~f~~~-~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
||+.++.. ..... . .+ ..+....+..+++.+||.+..++.++ .
T Consensus 94 e~l~~~~~~~~~~~----------------~-~~--------------~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 137 (256)
T TIGR03873 94 DVVALGRIPHRSLW----------------A-GD--------------SPHDAAVVDRALARTELSHLADRDMS-----T 137 (256)
T ss_pred HHHHhcchhhhhhc----------------c-CC--------------CHHHHHHHHHHHHHcCcHhhhcCCcc-----c
Confidence 99987521 00000 0 00 00011235668889999877776665 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
|||||||||+||+||+.+|+++||||||+++|....+.+.+++.+. .+++||+++|+...+.++||+|++|++|++++
T Consensus 138 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (256)
T TIGR03873 138 LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVA 217 (256)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEE
Confidence 9999999999999999999999999999999888777777766544 35667777888889999999999999999999
Q ss_pred ecCHhHH
Q 044321 389 QGPREYV 395 (521)
Q Consensus 389 ~G~~~~v 395 (521)
.|+.+++
T Consensus 218 ~g~~~~~ 224 (256)
T TIGR03873 218 AGPPREV 224 (256)
T ss_pred ecCHHHh
Confidence 9998876
No 156
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-34 Score=285.71 Aligned_cols=192 Identities=20% Similarity=0.265 Sum_probs=144.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CCC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SLK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++| ..+ ..+|++|+...
T Consensus 32 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 111 (267)
T PRK14235 32 KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNP 111 (267)
T ss_pred EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCC
Confidence 3599999999999999999999999999999999998864 211 12678887666
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++ .||.||+.|.....+.... . .+....+..+++.+||.+......
T Consensus 112 ~~-~tv~enl~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 157 (267)
T PRK14235 112 FP-KSIYENVAYGPRIHGLARS--------K------------------------AELDEIVETSLRKAGLWEEVKDRL- 157 (267)
T ss_pred CC-CcHHHHHHHHHHhcccccc--------h------------------------HHHHHHHHHHHHHcCCchhhhHHh-
Confidence 66 4999999876432211000 0 001123466788889864211111
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+..+..|||||||||+||+||+.+|++|||||||+++|......+.+++... .+.+||+++|+...+..+||++++|++
T Consensus 158 ~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~ 237 (267)
T PRK14235 158 HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHL 237 (267)
T ss_pred hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEEC
Confidence 1234569999999999999999999999999999998887777776666543 235666677888888899999999999
Q ss_pred CEEEEecCHhHHH
Q 044321 384 GHIVYQGPREYVL 396 (521)
Q Consensus 384 G~iv~~G~~~~v~ 396 (521)
|++++.|+++++.
T Consensus 238 G~i~~~g~~~~~~ 250 (267)
T PRK14235 238 GNLVEVGDTEKMF 250 (267)
T ss_pred CEEEEeCCHHHHH
Confidence 9999999988763
No 157
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-34 Score=288.65 Aligned_cols=186 Identities=19% Similarity=0.247 Sum_probs=144.0
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------------ceeeecCCcc-ccC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------------NRCDISQHDV-HIG 226 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------------~~~~v~q~d~-~~~ 226 (521)
.+|+||||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+.. .+.
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 104 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLF 104 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhh
Confidence 599999999999999999999999999999999999876421 1257777642 233
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccC
Q 044321 227 EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGD 305 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~ 305 (521)
..|+.||+.|.....+... .+....++.+++.++|. +..++.++
T Consensus 105 ~~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~L~~~~~~~~~~- 149 (289)
T PRK13645 105 QETIEKDIAFGPVNLGENK----------------------------------QEAYKKVPELLKLVQLPEDYVKRSPF- 149 (289)
T ss_pred hhHHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhHhcCChh-
Confidence 4688888877532211100 00112345678889995 55665554
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+.+++.++||+|++|+
T Consensus 150 ----~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~ 225 (289)
T PRK13645 150 ----ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMH 225 (289)
T ss_pred ----hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 59999999999999999999999999999998888777776655433 25667777888888999999999999
Q ss_pred CCEEEEecCHhHHH
Q 044321 383 NGHIVYQGPREYVL 396 (521)
Q Consensus 383 ~G~iv~~G~~~~v~ 396 (521)
+|++++.|+++++.
T Consensus 226 ~G~i~~~g~~~~~~ 239 (289)
T PRK13645 226 EGKVISIGSPFEIF 239 (289)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999988874
No 158
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4.7e-34 Score=317.13 Aligned_cols=235 Identities=17% Similarity=0.210 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
.++...+.+|+.++++.+++.. ..........+++|+|+++.++
T Consensus 308 ~~~~~~s~~ri~~~l~~~~~~~--------~~~~~~~~~~~i~~~~v~f~y~---------------------------- 351 (592)
T PRK10790 308 LQQAVVAGERVFELMDGPRQQY--------GNDDRPLQSGRIDIDNVSFAYR---------------------------- 351 (592)
T ss_pred HHHHHHHHHHHHHHhcCCCccC--------CCCccCCCCCeEEEEEEEEEeC----------------------------
Confidence 4566778888888876554310 0000111123689999999862
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccc
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVH 224 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~ 224 (521)
....+|+|+||+|++|+.++|+|+||||||||+++|+|+++|..+ ..+||+|++.+
T Consensus 352 -----~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~l 426 (592)
T PRK10790 352 -----DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVV 426 (592)
T ss_pred -----CCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCcc
Confidence 112599999999999999999999999999999999999988632 12899998776
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
|+ .|+++||.++.. . . .+...++....+ .++.++ .|++..||.+|
T Consensus 427 F~-~Ti~~NI~~~~~---~-~----------------------d~~i~~a~~~~g------l~~~i~--~lp~Gldt~i~ 471 (592)
T PRK10790 427 LA-DTFLANVTLGRD---I-S----------------------EEQVWQALETVQ------LAELAR--SLPDGLYTPLG 471 (592)
T ss_pred cc-chHHHHHHhCCC---C-C----------------------HHHHHHHHHHcC------cHHHHH--hcccccccccc
Confidence 65 599999998631 1 0 011111111000 111222 26677899998
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
+ ....||||||||++|||||+.+|++|+|||||+++|.+..+.+.+.+... ++|+|+++ |.. .....||+|++|+
T Consensus 472 e-~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivt-Hr~-~~l~~~D~ii~l~ 548 (592)
T PRK10790 472 E-QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIA-HRL-STIVEADTILVLH 548 (592)
T ss_pred C-CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEe-cch-HHHHhCCEEEEEE
Confidence 7 45679999999999999999999999999999998888777776666543 45666555 444 5566799999999
Q ss_pred CCEEEEecCHhHHHH
Q 044321 383 NGHIVYQGPREYVLE 397 (521)
Q Consensus 383 ~G~iv~~G~~~~v~~ 397 (521)
+|++++.|+++++++
T Consensus 549 ~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 549 RGQAVEQGTHQQLLA 563 (592)
T ss_pred CCEEEEEcCHHHHHh
Confidence 999999999999853
No 159
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-34 Score=293.83 Aligned_cols=203 Identities=21% Similarity=0.291 Sum_probs=153.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CC---------------------CceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SL---------------------KNRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~---------------------~~~~~v~q~d~~ 224 (521)
..+|+||||+|++|++++|+|||||||||||++|+|+..+ .. ...+|++|+...
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 3599999999999999999999999999999999998752 11 123788898766
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
+ ..|++||+.|+....+... .+ .....+..+++.++|.+..++.++
T Consensus 175 ~-~~ti~eNi~~~~~~~~~~~-~~--------------------------------~~~~~~~~~l~~~~L~~~l~~~~~ 220 (329)
T PRK14257 175 F-EMSIFDNVAYGPRNNGIND-RK--------------------------------ILEKIVEKSLKSAALWDEVKDDLD 220 (329)
T ss_pred C-CCcHHHHHHhHHHhcCCCh-HH--------------------------------HHHHHHHHHHHHcCCcchhhhhhh
Confidence 5 5899999998643211100 00 001123456777777554444554
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+.+..|||||||||+|||||+.+|+||||||||+++|....+.+.+.+... ...++++++|....+.++||+|++|++
T Consensus 221 -~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~ 299 (329)
T PRK14257 221 -KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQ 299 (329)
T ss_pred -CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 356679999999999999999999999999999998887777776666543 345667777888888999999999999
Q ss_pred CEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHH
Q 044321 384 GHIVYQGPREYVLEFFKFMGFECPKRKGVADFL 416 (521)
Q Consensus 384 G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl 416 (521)
|++++.|+++++. ..|....+.+|+
T Consensus 300 G~i~e~g~~~~l~--------~~~~~~~~~~~~ 324 (329)
T PRK14257 300 GWIEEAGETKTIF--------IHPKNKRTKDYI 324 (329)
T ss_pred CEEEEeCCHHHHh--------cCCCcHHHHHHh
Confidence 9999999999984 455554444444
No 160
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=3.3e-34 Score=287.23 Aligned_cols=194 Identities=24% Similarity=0.285 Sum_probs=150.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC---C------------------------ceeeecCCcc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL---K------------------------NRCDISQHDV 223 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~---~------------------------~~~~v~q~d~ 223 (521)
+.+|+||||+|.+|++++|+||||||||||+++|+|+++|+. + ..+|++|+..
T Consensus 17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN 96 (262)
T ss_pred eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccc
Confidence 469999999999999999999999999999999999987531 0 1278889888
Q ss_pred ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccc
Q 044321 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMV 303 (521)
Q Consensus 224 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 303 (521)
+++.+||.||+.+....... ..... ... ...+....+..+++.+||.+..++.+
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~-----~~~~~------~~~---------------~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 97 LVNRLSVLENVLIGALGSTP-----FWRTC------FSW---------------FTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccCCcHHHHHHhhhccccc-----chhhh------ccc---------------ccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 88889999999875321000 00000 000 00011224567899999987777666
Q ss_pred cCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEE
Q 044321 304 GDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 304 g~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
+ .|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+...+..+||+|++
T Consensus 151 ~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~ 225 (262)
T PRK09984 151 S-----TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVA 225 (262)
T ss_pred c-----ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 5 59999999999999999999999999999999888777777766543 256777778888889999999999
Q ss_pred EeCCEEEEecCHhHH
Q 044321 381 ISNGHIVYQGPREYV 395 (521)
Q Consensus 381 L~~G~iv~~G~~~~v 395 (521)
|++|++++.|+++++
T Consensus 226 l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 226 LRQGHVFYDGSSQQF 240 (262)
T ss_pred EECCEEEEeCCHHHh
Confidence 999999999998764
No 161
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-34 Score=287.30 Aligned_cols=190 Identities=23% Similarity=0.306 Sum_probs=149.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~ 231 (521)
+.+|+||||+|.+|++++|+|||||||||||++|+|+++|+.+ ..+|++|+...++.+|+.
T Consensus 20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 99 (265)
T PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQ 99 (265)
T ss_pred EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHH
Confidence 4699999999999999999999999999999999999876421 137888988888889999
Q ss_pred HHHHHHHHhc-cCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 232 ETLAFSARCQ-GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 232 E~l~f~~~~~-~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
+|+.+..... ..... .. ......++.+++.+||.+..++.+. .
T Consensus 100 ~~~~~~~~~~~~~~~~-------------------~~------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 143 (265)
T PRK10253 100 ELVARGRYPHQPLFTR-------------------WR------------KEDEEAVTKAMQATGITHLADQSVD-----T 143 (265)
T ss_pred HHHHhCcccccccccC-------------------CC------------HHHHHHHHHHHHHcCCHHHhcCCcc-----c
Confidence 9997752100 00000 00 0011235678889999876666554 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+..++.++||++++|++|+++
T Consensus 144 LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 223 (265)
T PRK10253 144 LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIV 223 (265)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999888777666665443 2566777788888899999999999999999
Q ss_pred EecCHhHHH
Q 044321 388 YQGPREYVL 396 (521)
Q Consensus 388 ~~G~~~~v~ 396 (521)
+.|+++++.
T Consensus 224 ~~g~~~~~~ 232 (265)
T PRK10253 224 AQGAPKEIV 232 (265)
T ss_pred EeCCHHHHh
Confidence 999988764
No 162
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-34 Score=273.24 Aligned_cols=188 Identities=28% Similarity=0.387 Sum_probs=147.3
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV 230 (521)
.+.+|++||++++|||+++|+||||||||||||+|+|.+.|+.+ ..+.++|+..+-+..||
T Consensus 13 Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv 92 (259)
T COG4559 13 GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTV 92 (259)
T ss_pred cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEH
Confidence 34799999999999999999999999999999999999987632 12667888777778899
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
+|-+.++..-.+.+... .+...+++.+|...++.+.+... ...
T Consensus 93 ~eVV~mGr~p~~~g~~~--------------------------------~e~~~i~~~ala~~d~~~la~R~-----y~~ 135 (259)
T COG4559 93 QEVVQMGRIPHRSGREP--------------------------------EEDERIAAQALAATDLSGLAGRD-----YRT 135 (259)
T ss_pred HHHHHhcccccccCCCc--------------------------------hhhHHHHHHHHHHcChhhhhccc-----hhh
Confidence 99999876433221110 01223456678888888776543 356
Q ss_pred CChHHHHHHHHHHHHcC------CCcEEEEeCCChhhHHH----HHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEE
Q 044321 311 ISGGQRKRVTTGEMLVG------PAQALFMDEISNSTTFQ----IVNSLRQFIHILEGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~------~P~iLlLDEPTs~~~~~----i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
|||||||||.+||.|+. .+++|||||||+++|.. +++..+++++ .+..|+.+.|+.+.+..+||+|++
T Consensus 136 LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~--~g~~V~~VLHDLNLAA~YaDrivl 213 (259)
T COG4559 136 LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAR--EGGAVLAVLHDLNLAAQYADRIVL 213 (259)
T ss_pred cCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHh--cCCcEEEEEccchHHHHhhheeee
Confidence 99999999999999974 44699999999987764 4555556554 335555667899999999999999
Q ss_pred EeCCEEEEecCHhHHH
Q 044321 381 ISNGHIVYQGPREYVL 396 (521)
Q Consensus 381 L~~G~iv~~G~~~~v~ 396 (521)
|++|+++..|++++++
T Consensus 214 l~~Grv~a~g~p~~vl 229 (259)
T COG4559 214 LHQGRVIASGSPQDVL 229 (259)
T ss_pred eeCCeEeecCCHHHhc
Confidence 9999999999999885
No 163
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9e-34 Score=282.25 Aligned_cols=204 Identities=18% Similarity=0.234 Sum_probs=151.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC-----C---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL-----K---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~-----~---------------------~~~~v~q~d~~ 224 (521)
+.+|+|+||+|.+|++++|+||||||||||+++|+|+++|.. + ..+|++|+...
T Consensus 17 ~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 96 (251)
T PRK14249 17 HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNP 96 (251)
T ss_pred eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCcc
Confidence 359999999999999999999999999999999999987641 0 13688888777
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++ .|+.||+.|.....+.... .+....++.+++.+||.+......
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~- 141 (251)
T PRK14249 97 FP-KSIFDNVAFGPRMLGTTAQ---------------------------------SRLDEVVEKSLRQAALWDEVKDNL- 141 (251)
T ss_pred Cc-CcHHHHHhhHHHhcCCChh---------------------------------hHHHHHHHHHHHHhCCchhhhhHh-
Confidence 76 4999999886432211000 000112344566667643211111
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+..+..|||||||||+|||||+.+|++|||||||+++|......+.+++... .+.+|++++|+...+.++||++++|++
T Consensus 142 ~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~ 221 (251)
T PRK14249 142 HKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLT 221 (251)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeC
Confidence 2345569999999999999999999999999999999988777777666543 345667778888899999999999999
Q ss_pred CEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHH
Q 044321 384 GHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQ 417 (521)
Q Consensus 384 G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~ 417 (521)
|++++.|+++++. ..|....+.+|+.
T Consensus 222 G~i~~~~~~~~~~--------~~~~~~~~~~~~~ 247 (251)
T PRK14249 222 GDLVEYGRTGEIF--------SRPRDKRTEDYIT 247 (251)
T ss_pred CeEEEeCCHHHHH--------hCCCChHHHHHHh
Confidence 9999999988873 3444444555553
No 164
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-34 Score=283.53 Aligned_cols=191 Identities=18% Similarity=0.251 Sum_probs=143.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC--CC---CC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD--SS---LK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~--~~---~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|++. |. .+ ..+|++|+..+
T Consensus 25 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 104 (259)
T PRK14274 25 HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNP 104 (259)
T ss_pred eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcc
Confidence 369999999999999999999999999999999999875 21 11 12678887766
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++. ||.||+.|.....+.... .+....++.+++.+|+.+......
T Consensus 105 ~~~-tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~l- 149 (259)
T PRK14274 105 FPQ-SIFDNVAYGPRIHGTKNK---------------------------------KKLQEIVEKSLKDVALWDEVKDRL- 149 (259)
T ss_pred ccc-CHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhhhh-
Confidence 664 999999876432211000 001123456777888753211111
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+..+..|||||||||+||++|+.+|++|||||||+++|......+.+++.+. .+.++|+++|+.+.+.++||++++|++
T Consensus 150 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 229 (259)
T PRK14274 150 HTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYM 229 (259)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEEC
Confidence 2234569999999999999999999999999999998888777776666543 245666677888888999999999999
Q ss_pred CEEEEecCHhHHH
Q 044321 384 GHIVYQGPREYVL 396 (521)
Q Consensus 384 G~iv~~G~~~~v~ 396 (521)
|+++..|+++++.
T Consensus 230 G~i~~~g~~~~~~ 242 (259)
T PRK14274 230 GELVECNDTNKMF 242 (259)
T ss_pred CEEEEECCHHHHh
Confidence 9999999999874
No 165
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-33 Score=281.12 Aligned_cols=192 Identities=17% Similarity=0.203 Sum_probs=146.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC---CCCC-------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD---SSLK-------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~---~~~~-------------------~~~~v~q~d~~~~~l 228 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++ |..+ ..+|++|+...++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~ 93 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-K 93 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-c
Confidence 469999999999999999999999999999999999874 2211 1278888877665 7
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
|++||+.+.....+..... ......+..+++.+||........ +..+
T Consensus 94 tv~eni~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~~~~ 140 (246)
T PRK14269 94 SIYENISYAPKLHGMIKNK--------------------------------DEEEALVVDCLQKVGLFEEVKDKL-KQNA 140 (246)
T ss_pred cHHHHhhhHHhhcCcccCh--------------------------------HHHHHHHHHHHHHcCCChhhhHHh-cCCc
Confidence 9999998864322110000 001123456788889853211111 2344
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
+.|||||||||+|||||+.+|++|||||||+++|......+.+++.+. .++++++++|+..++.++||+|++|++|+++
T Consensus 141 ~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 220 (246)
T PRK14269 141 LALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELI 220 (246)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEE
Confidence 579999999999999999999999999999999888777777766543 3566777788888899999999999999999
Q ss_pred EecCHhHHH
Q 044321 388 YQGPREYVL 396 (521)
Q Consensus 388 ~~G~~~~v~ 396 (521)
+.|+++++.
T Consensus 221 ~~g~~~~~~ 229 (246)
T PRK14269 221 EFGESKEFF 229 (246)
T ss_pred EECCHHHHH
Confidence 999988763
No 166
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=3.6e-34 Score=277.68 Aligned_cols=177 Identities=22% Similarity=0.342 Sum_probs=140.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------------ceeeecCCccccCCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------------NRCDISQHDVHIGEMT 229 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------------~~~~v~q~d~~~~~lT 229 (521)
+.+|+++||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+..+++.+|
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLT 92 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCc
Confidence 4699999999999999999999999999999999999876421 1268888887888899
Q ss_pred HHHHHHHHHH-hccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 230 VRETLAFSAR-CQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 230 V~E~l~f~~~-~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
+.||+.+... ..+... .+....+..+++.+||.+..++.+.
T Consensus 93 ~~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 134 (213)
T cd03262 93 VLENITLAPIKVKGMSK----------------------------------AEAEERALELLEKVGLADKADAYPA---- 134 (213)
T ss_pred HHHHHHhHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhhhCcc----
Confidence 9999987532 111000 0011234667888999877776654
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .++++|+++|+..++.++||++++|++|++
T Consensus 135 -~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 135 -QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred -ccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 59999999999999999999999999999999888777776666543 345666778888889999999999999974
No 167
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=6.6e-34 Score=314.92 Aligned_cols=232 Identities=21% Similarity=0.290 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
.++...+++|+.++++.+++. ... ...........++|+|+++.+..
T Consensus 304 ~~~~~~s~~ri~~ll~~~~~~-----~~~-~~~~~~~~~~~i~~~~v~f~y~~--------------------------- 350 (574)
T PRK11160 304 LGQVIASARRINEITEQKPEV-----TFP-TTSTAAADQVSLTLNNVSFTYPD--------------------------- 350 (574)
T ss_pred HHHHHHHHHHHHHHHhCCCCC-----CCC-cccCCCCCCCeEEEEEEEEECCC---------------------------
Confidence 456677888888888766541 000 00001112346999999998621
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccc
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVH 224 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~ 224 (521)
+++.+|+|+||+|+||+.++|+||||||||||+++|+|+++|+.+ ..+|++|+..+
T Consensus 351 -----~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 425 (574)
T PRK11160 351 -----QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHL 425 (574)
T ss_pred -----CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchh
Confidence 123599999999999999999999999999999999999988632 12789998755
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCC------Ccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGL------DVC 298 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL------~~~ 298 (521)
| ..|++||+.++.. +.+.+. +..+++.+|+ ++.
T Consensus 426 f-~~ti~~Ni~~~~~-------------------------~~~~~~---------------i~~al~~~~l~~~i~~p~G 464 (574)
T PRK11160 426 F-SATLRDNLLLAAP-------------------------NASDEA---------------LIEVLQQVGLEKLLEDDKG 464 (574)
T ss_pred h-cccHHHHhhcCCC-------------------------ccCHHH---------------HHHHHHHcCCHHHHcCccc
Confidence 5 5799999988531 011111 1122223332 567
Q ss_pred ccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcC
Q 044321 299 ADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFD 376 (521)
Q Consensus 299 ~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D 376 (521)
+||.+|+ .+..||||||||++|||||+.+|++|+|||||+++|.+..+.+.+.+... ++|+|+++ |.... ...||
T Consensus 465 ldT~vge-~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiit-Hr~~~-~~~~d 541 (574)
T PRK11160 465 LNAWLGE-GGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMIT-HRLTG-LEQFD 541 (574)
T ss_pred cCchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEe-cChhH-HHhCC
Confidence 8999987 46679999999999999999999999999999998888777777666543 45555555 54444 45799
Q ss_pred eEEEEeCCEEEEecCHhHHHH
Q 044321 377 DIILISNGHIVYQGPREYVLE 397 (521)
Q Consensus 377 ~VivL~~G~iv~~G~~~~v~~ 397 (521)
+|++|++|++++.|+++++++
T Consensus 542 ~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 542 RICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred EEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999998853
No 168
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=7.5e-34 Score=285.30 Aligned_cols=188 Identities=22% Similarity=0.261 Sum_probs=146.4
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCc--ccc
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHD--VHI 225 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d--~~~ 225 (521)
.+.+|+||||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+. .++
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 102 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVN 102 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcC
Confidence 35799999999999999999999999999999999999876521 136778875 355
Q ss_pred CCCCHHHHHHHHHHhc-cCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccc
Q 044321 226 GEMTVRETLAFSARCQ-GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMV 303 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~-~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~v 303 (521)
+.+||.||+.+..... ... ..+....+..+++.+||. ...+..+
T Consensus 103 ~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~~~~~~ 148 (265)
T TIGR02769 103 PRMTVRQIIGEPLRHLTSLD----------------------------------ESEQKARIAELLDMVGLRSEDADKLP 148 (265)
T ss_pred CCCCHHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCChhhhhCCh
Confidence 6789999987653211 000 001112356788999996 5566555
Q ss_pred cCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEE
Q 044321 304 GDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 304 g~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
+ .|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+...+..+||++++
T Consensus 149 ~-----~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~ 223 (265)
T TIGR02769 149 R-----QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAV 223 (265)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEE
Confidence 4 59999999999999999999999999999998887655555554432 256677778888889999999999
Q ss_pred EeCCEEEEecCHhHHH
Q 044321 381 ISNGHIVYQGPREYVL 396 (521)
Q Consensus 381 L~~G~iv~~G~~~~v~ 396 (521)
|++|++++.|+++++.
T Consensus 224 l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 224 MDKGQIVEECDVAQLL 239 (265)
T ss_pred EeCCEEEEECCHHHHc
Confidence 9999999999998874
No 169
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.2e-34 Score=326.12 Aligned_cols=240 Identities=22% Similarity=0.305 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCc--eeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPT--IEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSL 161 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~ 161 (521)
...++.+..+++++++..+.. .. -+..+...|. .+|+|+|++|.|.
T Consensus 951 ~~ka~~Aa~~iF~i~dr~~~i-----~~-~~~~~~~~~~~~G~I~~~~V~F~YP-------------------------- 998 (1228)
T KOG0055|consen 951 ISKAKIAAGSIFEILDRKPTI-----DP-DSTSGGKLPNVKGDIEFRNVSFAYP-------------------------- 998 (1228)
T ss_pred HHHHHHHHHHHHHHhcCCCCC-----CC-CCCCCCccccceeEEEEeeeEeeCC--------------------------
Confidence 345677888999999887741 11 1123433443 4799999999973
Q ss_pred ccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCc
Q 044321 162 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHD 222 (521)
Q Consensus 162 ~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d 222 (521)
...+..||+|+|++|++|+.+||+|||||||||.+.+|-.+++|..+ ..+.|.|++
T Consensus 999 -----sRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP 1073 (1228)
T KOG0055|consen 999 -----TRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEP 1073 (1228)
T ss_pred -----CCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCc
Confidence 12456799999999999999999999999999999999999998632 127788887
Q ss_pred cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccc
Q 044321 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTM 302 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 302 (521)
.+| ..|++|||.|+... + +.++.++++... ...+++ .+|++.+||.
T Consensus 1074 ~LF-~~TIrENI~YG~~~--v-----------------------s~~eIi~Aak~A-----NaH~FI---~sLP~GyDT~ 1119 (1228)
T KOG0055|consen 1074 VLF-NGTIRENIAYGSEE--V-----------------------SEEEIIEAAKLA-----NAHNFI---SSLPQGYDTR 1119 (1228)
T ss_pred hhh-cccHHHHHhccCCC--C-----------------------CHHHHHHHHHHh-----hhHHHH---hcCcCcccCc
Confidence 765 68999999998211 1 112223333222 134443 4699999999
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEE
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
||+ .+.+||||||||++|||||++||+||||||.||++|.+.-+.+++.+... ++|+|++.|. ..+.+.||.|+|
T Consensus 1120 vGe-rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHR--LSTIqnaD~I~V 1196 (1228)
T KOG0055|consen 1120 VGE-RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHR--LSTIQNADVIAV 1196 (1228)
T ss_pred cCc-ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecc--hhhhhcCCEEEE
Confidence 997 44579999999999999999999999999999999988888777776543 6778777655 467889999999
Q ss_pred EeCCEEEEecCHhHHHH
Q 044321 381 ISNGHIVYQGPREYVLE 397 (521)
Q Consensus 381 L~~G~iv~~G~~~~v~~ 397 (521)
+++|+|+++|++++++.
T Consensus 1197 i~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1197 LKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred EECCEEEecccHHHHHh
Confidence 99999999999999974
No 170
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=281.48 Aligned_cols=188 Identities=21% Similarity=0.274 Sum_probs=144.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC-----CC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS-----LK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~-----~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+++|. .+ ..+|++|+..+
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNP 96 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCcc
Confidence 46999999999999999999999999999999999997642 00 13688888888
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC----cccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD----VCAD 300 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 300 (521)
++.+|+.||+.+.....+.... ++....+..+++.+++. +..+
T Consensus 97 ~~~~t~~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~~ 143 (252)
T PRK14272 97 FPTMSVFDNVVAGLKLAGIRDR---------------------------------DHLMEVAERSLRGAALWDEVKDRLK 143 (252)
T ss_pred CcCCCHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCcchhhhhhhc
Confidence 8889999999875432111000 00011233445555543 2334
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEE
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
+. ++.|||||||||+||+||+.+|++|||||||+++|....+.+.+++++. .++++++++|+...+.++||+|+
T Consensus 144 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~ 218 (252)
T PRK14272 144 TP-----ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTS 218 (252)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEE
Confidence 44 4569999999999999999999999999999999888777777766543 24667777888888999999999
Q ss_pred EEeCCEEEEecCHhHHH
Q 044321 380 LISNGHIVYQGPREYVL 396 (521)
Q Consensus 380 vL~~G~iv~~G~~~~v~ 396 (521)
+|++|++++.|+++++.
T Consensus 219 ~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 219 FFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999998874
No 171
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.7e-34 Score=278.37 Aligned_cols=176 Identities=27% Similarity=0.360 Sum_probs=138.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCcc-ccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDV-HIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~-~~~~lTV 230 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+.. .++.+|+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~ 93 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTV 93 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcH
Confidence 4699999999999999999999999999999999999876521 1268888753 4667899
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
.||+.+.....+... .+....++.+++.+||.+..++.++ .
T Consensus 94 ~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 134 (211)
T cd03225 94 EEEVAFGLENLGLPE----------------------------------EEIEERVEEALELVGLEGLRDRSPF-----T 134 (211)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCcHhhhcCCcc-----c
Confidence 999987543211100 0011234668889999876666654 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+..++..+||+|++|++|+
T Consensus 135 LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 135 LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999998888777776666443 25667777888888999999999999985
No 172
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-34 Score=277.28 Aligned_cols=176 Identities=22% Similarity=0.288 Sum_probs=141.5
Q ss_pred eeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHHHHHHH
Q 044321 176 DVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRETLAFSA 238 (521)
Q Consensus 176 dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~l~f~~ 238 (521)
|+||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+...++.+|++||+.+..
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 95 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGL 95 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccc
Confidence 99999999999999999999999999999999877531 1378899888888899999998753
Q ss_pred HhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHH
Q 044321 239 RCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKR 318 (521)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQR 318 (521)
....... .+....+.++++.+||.+..++.+. .||||||||
T Consensus 96 ~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 136 (211)
T cd03298 96 SPGLKLT----------------------------------AEDRQAIEVALARVGLAGLEKRLPG-----ELSGGERQR 136 (211)
T ss_pred ccccCcc----------------------------------HHHHHHHHHHHHHcCCHHHHhCCcc-----cCCHHHHHH
Confidence 2110000 0011235678899999877776654 599999999
Q ss_pred HHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 319 VTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 319 vaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
|+||+||+.+|++|||||||+++|....+.+.+++.+. .+.+|++++|+..++.++||++++|++|++++.|
T Consensus 137 v~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 137 VALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999998887777776666543 2556667788888899999999999999998764
No 173
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.4e-34 Score=298.64 Aligned_cols=211 Identities=23% Similarity=0.311 Sum_probs=162.6
Q ss_pred CCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCCh
Q 044321 117 GISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSV 196 (521)
Q Consensus 117 g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSG 196 (521)
.+..+.-.|+|+|+++++. .+++||++|||+|++|+-+||+|+||||
T Consensus 344 ~i~~~~~~I~F~dV~f~y~---------------------------------~k~~iL~gvsf~I~kGekVaIvG~nGsG 390 (591)
T KOG0057|consen 344 PIELFGGSIEFDDVHFSYG---------------------------------PKRKVLKGVSFTIPKGEKVAIVGSNGSG 390 (591)
T ss_pred CcccCCCcEEEEeeEEEeC---------------------------------CCCceecceeEEecCCCEEEEECCCCCC
Confidence 4555666899999999972 2346999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHH
Q 044321 197 KTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREK 258 (521)
Q Consensus 197 KSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~ 258 (521)
|||++|+|.++++.+.. ..+||||+.. +++-||.+|+.|+.
T Consensus 391 KSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~-LFndTIl~NI~YGn-------------------- 449 (591)
T KOG0057|consen 391 KSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSV-LFNDTILYNIKYGN-------------------- 449 (591)
T ss_pred HHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCccc-ccchhHHHHhhcCC--------------------
Confidence 99999999999874321 2389999765 55689999999873
Q ss_pred hcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCC
Q 044321 259 AAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEIS 338 (521)
Q Consensus 259 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPT 338 (521)
+....+.+.+++...+ ..|.+. .|++.++|.||+++ .-|||||||||+||||++.+|+|+++||||
T Consensus 450 -----~sas~eeV~e~~k~a~-----~hd~i~---~l~~GY~T~VGerG-~~LSGGekQrvslaRa~lKda~Il~~DEaT 515 (591)
T KOG0057|consen 450 -----PSASDEEVVEACKRAG-----LHDVIS---RLPDGYQTLVGERG-LMLSGGEKQRVSLARAFLKDAPILLLDEAT 515 (591)
T ss_pred -----CCcCHHHHHHHHHHcC-----cHHHHH---hccccchhhHhhcc-cccccchHHHHHHHHHHhcCCCeEEecCcc
Confidence 2223333333333222 233333 48899999999844 459999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHH-c-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHHH
Q 044321 339 NSTTFQIVNSLRQFIHI-L-EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLE 397 (521)
Q Consensus 339 s~~~~~i~~~L~~l~~~-~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~~ 397 (521)
|++|.+.-..|.+.+.. . ++|+|+++|.. .+...||+|++|++|++...|++++++.
T Consensus 516 S~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 516 SALDSETEREILDMIMDVMSGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred cccchhhHHHHHHHHHHhcCCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 98777655555444433 3 56777766543 5677899999999999999999999864
No 174
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-33 Score=281.08 Aligned_cols=190 Identities=22% Similarity=0.276 Sum_probs=142.7
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CCC---------------------ceeeecCCcccc
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SLK---------------------NRCDISQHDVHI 225 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~~---------------------~~~~v~q~d~~~ 225 (521)
.+|+|+||+|++||+++|+|||||||||||++|+|++++ ..+ ..+|++|+...+
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF 96 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccC
Confidence 599999999999999999999999999999999998642 110 126888877666
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccC
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGD 305 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 305 (521)
+ +|+.+|+.+.....+.... ......++.+++.+++.+...... +
T Consensus 97 ~-~t~~~ni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~-~ 141 (250)
T PRK14240 97 P-MSIYDNVAYGPRTHGIKDK---------------------------------KKLDEIVEKSLKGAALWDEVKDRL-K 141 (250)
T ss_pred c-ccHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhHHHH-h
Confidence 6 8999999876432221000 001123455677777642111111 1
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
..+..|||||||||+|||||+.+|++|||||||+++|......+.+++.+. .+.+|++++|+...+.++||++++|++|
T Consensus 142 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G 221 (250)
T PRK14240 142 KSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNG 221 (250)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECC
Confidence 234569999999999999999999999999999999888777776666543 2456666778888899999999999999
Q ss_pred EEEEecCHhHHH
Q 044321 385 HIVYQGPREYVL 396 (521)
Q Consensus 385 ~iv~~G~~~~v~ 396 (521)
++++.|+++++.
T Consensus 222 ~i~~~~~~~~~~ 233 (250)
T PRK14240 222 EIVEFGDTVDLF 233 (250)
T ss_pred EEEEeCCHHHHH
Confidence 999999988763
No 175
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-33 Score=285.26 Aligned_cols=198 Identities=20% Similarity=0.237 Sum_probs=152.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCcc-ccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDV-HIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~-~~~~lTV 230 (521)
..+|+||||+|++|++++|+|+||||||||+++|+|+++|..+ ..+|++|+.. .++..||
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv 99 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATV 99 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCH
Confidence 3599999999999999999999999999999999999877532 1278888853 5777899
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
.||+.+.....+... .+....++.+++.+||.+..++.+. .
T Consensus 100 ~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 140 (277)
T PRK13642 100 EDDVAFGMENQGIPR----------------------------------EEMIKRVDEALLAVNMLDFKTREPA-----R 140 (277)
T ss_pred HHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCHhHhhCCcc-----c
Confidence 999987543211100 0011245678889999877766554 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
|||||||||+||+||+.+|++|||||||+++|....+.+.+++++. .+++|++++|+.+.+. .||+|++|++|+++
T Consensus 141 LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~ 219 (277)
T PRK13642 141 LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEII 219 (277)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEE
Confidence 9999999999999999999999999999998887777776665433 2556666778887775 69999999999999
Q ss_pred EecCHhHHHH---HHHHcCCCCCC
Q 044321 388 YQGPREYVLE---FFKFMGFECPK 408 (521)
Q Consensus 388 ~~G~~~~v~~---~f~~~g~~~p~ 408 (521)
..|+++++.. .+...++.+|.
T Consensus 220 ~~g~~~~~~~~~~~~~~~~~~~~~ 243 (277)
T PRK13642 220 KEAAPSELFATSEDMVEIGLDVPF 243 (277)
T ss_pred EeCCHHHHhcCHHHHHHCCCCCCH
Confidence 9999988752 22334555543
No 176
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-33 Score=280.55 Aligned_cols=190 Identities=19% Similarity=0.259 Sum_probs=143.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC-----CC--------------------ceeeecCCcccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS-----LK--------------------NRCDISQHDVHI 225 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~-----~~--------------------~~~~v~q~d~~~ 225 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|. .+ ..+|++|+...+
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 95 (249)
T PRK14253 16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPF 95 (249)
T ss_pred eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcC
Confidence 46999999999999999999999999999999999987752 10 126888887767
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccC
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGD 305 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 305 (521)
+ .||.||+.+.....+.... ......+..+++.+|+.+...... +
T Consensus 96 ~-~tv~~~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~l~~~~~~~~-~ 140 (249)
T PRK14253 96 P-MSIYENVAYGLRAQGIKDK---------------------------------KVLDEVVERSLRGAALWDEVKDRL-K 140 (249)
T ss_pred c-ccHHHHHHhHHHhcCCCch---------------------------------HHHHHHHHHHHHHcCCchhhhHHh-h
Confidence 6 8999999876432211000 001123345666777643211111 2
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
..+..|||||||||+||+||+.+|++|||||||+++|......+.+++++. ..++|++++|+..++.++||++++|++|
T Consensus 141 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G 220 (249)
T PRK14253 141 SHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMG 220 (249)
T ss_pred cCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECC
Confidence 234569999999999999999999999999999999888777777766554 2356677778888899999999999999
Q ss_pred EEEEecCHhHH
Q 044321 385 HIVYQGPREYV 395 (521)
Q Consensus 385 ~iv~~G~~~~v 395 (521)
++++.|+.+++
T Consensus 221 ~i~~~g~~~~~ 231 (249)
T PRK14253 221 ELVEHDDTQVI 231 (249)
T ss_pred EEEEeCCHHHH
Confidence 99999998876
No 177
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-33 Score=284.54 Aligned_cols=189 Identities=19% Similarity=0.238 Sum_probs=143.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CCC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SLK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|++++ +.+ ..+|++|+..+
T Consensus 26 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 105 (269)
T PRK14259 26 FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNP 105 (269)
T ss_pred EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCcc
Confidence 3699999999999999999999999999999999998752 210 13688888776
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++ .||+||+.+.....+... .....+..+++.+++........
T Consensus 106 ~~-~tv~enl~~~~~~~~~~~-----------------------------------~~~~~~~~~l~~~~l~~~l~~~~- 148 (269)
T PRK14259 106 FP-KSIYENIAFGARINGYTG-----------------------------------DMDELVERSLRKAAVWDECKDKL- 148 (269)
T ss_pred ch-hhHHHHHhhhhhhcCCcH-----------------------------------HHHHHHHHHHHHhCCcchhhhhh-
Confidence 66 599999987653221100 00112344566676632111111
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+..+..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+.+||+++|+..++.++||++++|++
T Consensus 149 ~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 149 NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred CCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEec
Confidence 2334569999999999999999999999999999999988887777776544 245677778888899999999999996
Q ss_pred -----------CEEEEecCHhHHH
Q 044321 384 -----------GHIVYQGPREYVL 396 (521)
Q Consensus 384 -----------G~iv~~G~~~~v~ 396 (521)
|++++.|+++++.
T Consensus 229 ~~~~~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 229 EEVEGGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred cccccccccccceEEEeCCHHHHH
Confidence 6799999999884
No 178
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=2.1e-33 Score=280.86 Aligned_cols=188 Identities=22% Similarity=0.267 Sum_probs=141.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------------ceeeecCCc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------------NRCDISQHD 222 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------------~~~~v~q~d 222 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+.
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~ 98 (258)
T PRK11701 19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHP 98 (258)
T ss_pred ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCc
Confidence 3699999999999999999999999999999999999876421 024555554
Q ss_pred c--ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-cc
Q 044321 223 V--HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CA 299 (521)
Q Consensus 223 ~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~ 299 (521)
. +++.+|+.+|+.+........ + ..+....+.++++.+|+.. ..
T Consensus 99 ~~~~~~~~~~~~~i~~~~~~~~~~----------------------~-----------~~~~~~~~~~~l~~~~l~~~~~ 145 (258)
T PRK11701 99 RDGLRMQVSAGGNIGERLMAVGAR----------------------H-----------YGDIRATAGDWLERVEIDAARI 145 (258)
T ss_pred ccccCccccHHHHHHHHHHHhccC----------------------c-----------HHHHHHHHHHHHHHcCCChhHH
Confidence 2 344556666665432110000 0 0011224567889999964 45
Q ss_pred cccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcC
Q 044321 300 DTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFD 376 (521)
Q Consensus 300 dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D 376 (521)
++.+ ..|||||||||+|||||+.+|++|||||||+++|....+.+.+++... .+.+||+++|+...+..+||
T Consensus 146 ~~~~-----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d 220 (258)
T PRK11701 146 DDLP-----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAH 220 (258)
T ss_pred hCCC-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcC
Confidence 5554 459999999999999999999999999999999888777776665432 25667777888888989999
Q ss_pred eEEEEeCCEEEEecCHhHHH
Q 044321 377 DIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 377 ~VivL~~G~iv~~G~~~~v~ 396 (521)
+|++|++|++++.|+++++.
T Consensus 221 ~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 221 RLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999988763
No 179
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-33 Score=278.98 Aligned_cols=185 Identities=25% Similarity=0.375 Sum_probs=149.7
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHHHH
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRETLA 235 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~l~ 235 (521)
+|+|+||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+..+++.+|+.||+.
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~ 93 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIA 93 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHH
Confidence 89999999999999999999999999999999999887532 2378899888888899999998
Q ss_pred HHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHH
Q 044321 236 FSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQ 315 (521)
Q Consensus 236 f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGq 315 (521)
+.....+... .+....+.++++.+||.+..++.+. .|||||
T Consensus 94 ~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 134 (235)
T cd03299 94 YGLKKRKVDK----------------------------------KEIERKVLEIAEMLGIDHLLNRKPE-----TLSGGE 134 (235)
T ss_pred HHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHHhcCcc-----cCCHHH
Confidence 7643221100 0011234567888999877776664 599999
Q ss_pred HHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCH
Q 044321 316 RKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPR 392 (521)
Q Consensus 316 rQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~ 392 (521)
||||+||+||+.+|++++|||||+++|....+.+.+++.+. .++++++++|+.+++.++||++++|++|++++.|++
T Consensus 135 ~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 214 (235)
T cd03299 135 QQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKP 214 (235)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999998888777776655432 145666677888889999999999999999999998
Q ss_pred hHHH
Q 044321 393 EYVL 396 (521)
Q Consensus 393 ~~v~ 396 (521)
+++.
T Consensus 215 ~~~~ 218 (235)
T cd03299 215 EEVF 218 (235)
T ss_pred HHHH
Confidence 7764
No 180
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-33 Score=283.17 Aligned_cols=187 Identities=19% Similarity=0.213 Sum_probs=142.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC-----CCCC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD-----SSLK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~-----~~~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|++. |+.+ ..+|++|+...
T Consensus 34 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 113 (268)
T PRK14248 34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNP 113 (268)
T ss_pred ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCcc
Confidence 369999999999999999999999999999999999753 2210 13688888776
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc----ccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV----CAD 300 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 300 (521)
++ .|+.||+.+.......... ......+..+++.+++.. ..+
T Consensus 114 ~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 159 (268)
T PRK14248 114 FP-KSIYNNITHALKYAGERRK---------------------------------SVLDEIVEESLTKAALWDEVKDRLH 159 (268)
T ss_pred Cc-ccHHHHHHHHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCCcchHHHHh
Confidence 66 4999999876322110000 000112344667777742 233
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEE
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
+ .+..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+..++.++||+|+
T Consensus 160 ~-----~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~ 234 (268)
T PRK14248 160 S-----SALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTA 234 (268)
T ss_pred c-----CcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEE
Confidence 3 34569999999999999999999999999999999988887777776544 23566777788888999999999
Q ss_pred EEeCCEEEEecCHhHHH
Q 044321 380 LISNGHIVYQGPREYVL 396 (521)
Q Consensus 380 vL~~G~iv~~G~~~~v~ 396 (521)
+|++|++++.|+++++.
T Consensus 235 ~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 235 FFLNGDLVEYDQTEQIF 251 (268)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988773
No 181
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-33 Score=280.38 Aligned_cols=187 Identities=19% Similarity=0.260 Sum_probs=144.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC--C---CCC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD--S---SLK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~--~---~~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++ | ..+ ..+|++|+..+
T Consensus 17 ~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14251 17 YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTP 96 (251)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCcc
Confidence 369999999999999999999999999999999999985 2 110 12678887766
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc----ccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV----CAD 300 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 300 (521)
++ .||+||+.+.....+.... ......++.+++.++|.. ..+
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 142 (251)
T PRK14251 97 FP-FSVYDNVAYGLKIAGVKDK---------------------------------ELIDQRVEESLKQAAIWKETKDNLD 142 (251)
T ss_pred CC-CcHHHHHHHHHHHcCCCCH---------------------------------HHHHHHHHHHHHHcCCCcchHHHhc
Confidence 64 7999999876432211000 000123455777788842 233
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEE
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
. .+..||||||||++||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+...+.++||+|+
T Consensus 143 ~-----~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~ 217 (251)
T PRK14251 143 R-----NAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTA 217 (251)
T ss_pred c-----ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEE
Confidence 3 34569999999999999999999999999999999888777777766543 24567777888888999999999
Q ss_pred EEeCCEEEEecCHhHHH
Q 044321 380 LISNGHIVYQGPREYVL 396 (521)
Q Consensus 380 vL~~G~iv~~G~~~~v~ 396 (521)
+|++|+++..|+.+++.
T Consensus 218 ~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 218 FLMNGDLIEAGPTEEMF 234 (251)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988773
No 182
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1e-33 Score=302.69 Aligned_cols=203 Identities=26% Similarity=0.325 Sum_probs=152.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC---Cce------------------------eeecCCcc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL---KNR------------------------CDISQHDV 223 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~---~~~------------------------~~v~q~d~ 223 (521)
..+++||||+|.+||+++|+|.|||||||+.++|.|++++.. .+. ++|+|++.
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 579999999999999999999999999999999999988652 111 45555432
Q ss_pred --ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccc
Q 044321 224 --HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADT 301 (521)
Q Consensus 224 --~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 301 (521)
+-|-+||..-+.=..+.++. ....+....+.++|+.+||++....
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~---------------------------------~~~~ea~~~a~elL~~Vgl~~~~~~ 148 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGK---------------------------------GSRAEARKRAVELLEQVGLPDPERR 148 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhcc---------------------------------ccHHHHHHHHHHHHHHcCCCChhhh
Confidence 22334444333222211110 1123455677889999999986654
Q ss_pred cccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHH----HHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCe
Q 044321 302 MVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTF----QIVNSLRQFIHILEGTILISLLQPAPETYDLFDD 377 (521)
Q Consensus 302 ~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~----~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~ 377 (521)
+.+++.|||||||||.||+||+.+|++||+||||+++|. ++.+.|+++.++ .++.+++++|+...+.++||+
T Consensus 149 ---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e-~g~a~l~ITHDl~Vva~~aDr 224 (539)
T COG1123 149 ---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRE-LGMAVLFITHDLGVVAELADR 224 (539)
T ss_pred ---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHH-cCcEEEEEcCCHHHHHHhcCe
Confidence 567889999999999999999999999999999997555 566666666544 467777788999999999999
Q ss_pred EEEEeCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHHH
Q 044321 378 IILISNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQE 418 (521)
Q Consensus 378 VivL~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~ 418 (521)
|+||++|++|+.|++++++ ..|.+..+.-.+..
T Consensus 225 v~Vm~~G~iVE~G~~~~i~--------~~p~hpYT~~Ll~a 257 (539)
T COG1123 225 VVVMYKGEIVETGPTEEIL--------SNPQHPYTRGLLAA 257 (539)
T ss_pred EEEEECCEEEEecCHHHHH--------hccCCcccHHHHhh
Confidence 9999999999999999994 45665555544443
No 183
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=8.5e-34 Score=278.15 Aligned_cols=184 Identities=32% Similarity=0.467 Sum_probs=141.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC---CCCC----------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD---SSLK----------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~---~~~~----------------~~~~v~q~d~~~~~lTV~ 231 (521)
+++|+|+||+|++|++++|+||||||||||+++|+|+++ |..+ ..+|++|+...++.+||+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 99 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVR 99 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHH
Confidence 579999999999999999999999999999999999987 5421 237889988888899999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHH-HHHHcCCCccccccccCccCCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDY-ILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
||+.|.......... . .. ......+. +++.+++.+..++.+ +.
T Consensus 100 enl~~~~~~~~~~~~--------------------~-~~----------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 143 (226)
T cd03234 100 ETLTYTAILRLPRKS--------------------S-DA----------IRKKRVEDVLLRDLALTRIGGNLV-----KG 143 (226)
T ss_pred HHHHHHHHhhccccc--------------------c-hH----------HHHHHHHHHHHHhhcchhhhcccc-----cC
Confidence 999986543211000 0 00 00012233 788888877666555 45
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecCh-hHHHhhcCeEEEEeCCEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPA-PETYDLFDDIILISNGHIV 387 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~-~~~~~l~D~VivL~~G~iv 387 (521)
|||||+|||+||+||+.+|++|||||||+++|....+.+.+++.+. .+.++++++|+. .++.++||++++|++|+++
T Consensus 144 LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~ 223 (226)
T cd03234 144 ISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIV 223 (226)
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEE
Confidence 9999999999999999999999999999998887777766666433 244555555665 5899999999999999999
Q ss_pred Eec
Q 044321 388 YQG 390 (521)
Q Consensus 388 ~~G 390 (521)
+.|
T Consensus 224 ~~g 226 (226)
T cd03234 224 YSG 226 (226)
T ss_pred ecC
Confidence 876
No 184
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-33 Score=278.02 Aligned_cols=182 Identities=20% Similarity=0.326 Sum_probs=146.2
Q ss_pred eeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHHHHHHH
Q 044321 176 DVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRETLAFSA 238 (521)
Q Consensus 176 dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~l~f~~ 238 (521)
||||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..+++.+|+.||+.+..
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 96 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGL 96 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhccc
Confidence 89999999999999999999999999999999876521 1378899888888899999998753
Q ss_pred HhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHH
Q 044321 239 RCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKR 318 (521)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQR 318 (521)
.. ..... ......+.++++.+||.+..++.+. .||||||||
T Consensus 97 ~~-~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 137 (232)
T PRK10771 97 NP-GLKLN---------------------------------AAQREKLHAIARQMGIEDLLARLPG-----QLSGGQRQR 137 (232)
T ss_pred cc-ccCCC---------------------------------HHHHHHHHHHHHHcCcHHHHhCCcc-----cCCHHHHHH
Confidence 21 00000 0011235668899999877777665 599999999
Q ss_pred HHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHH
Q 044321 319 VTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYV 395 (521)
Q Consensus 319 vaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v 395 (521)
|+||+||+.+|++|||||||+++|....+.+.+++.+. .++++|+++|+..++.++||++++|++|++++.|+.+++
T Consensus 138 v~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 217 (232)
T PRK10771 138 VALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDEL 217 (232)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999888776666655432 245666677888888999999999999999999998877
Q ss_pred H
Q 044321 396 L 396 (521)
Q Consensus 396 ~ 396 (521)
.
T Consensus 218 ~ 218 (232)
T PRK10771 218 L 218 (232)
T ss_pred H
Confidence 4
No 185
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.6e-33 Score=283.35 Aligned_cols=187 Identities=21% Similarity=0.251 Sum_probs=145.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCcc--ccCCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDV--HIGEMT 229 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~--~~~~lT 229 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+.. +++.+|
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t 105 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQR 105 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchh
Confidence 4699999999999999999999999999999999999877521 1256777653 456678
Q ss_pred HHHHHHHHHHhcc-CchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCcc
Q 044321 230 VRETLAFSARCQG-VGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDEI 307 (521)
Q Consensus 230 V~E~l~f~~~~~~-~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~ 307 (521)
+.+++.+...... .. ..+....+..+++.+||. ...++.+
T Consensus 106 v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~---- 147 (267)
T PRK15112 106 ISQILDFPLRLNTDLE----------------------------------PEQREKQIIETLRQVGLLPDHASYYP---- 147 (267)
T ss_pred HHHHHHHHHHhccCCC----------------------------------HHHHHHHHHHHHHHcCCChHHHhcCc----
Confidence 8888776533210 00 001112456789999994 5555554
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+...+..+||++++|++|
T Consensus 148 -~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G 226 (267)
T PRK15112 148 -HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQG 226 (267)
T ss_pred -hhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 459999999999999999999999999999999888777776665543 2566667778888899999999999999
Q ss_pred EEEEecCHhHHH
Q 044321 385 HIVYQGPREYVL 396 (521)
Q Consensus 385 ~iv~~G~~~~v~ 396 (521)
++++.|+++++.
T Consensus 227 ~i~~~~~~~~~~ 238 (267)
T PRK15112 227 EVVERGSTADVL 238 (267)
T ss_pred EEEecCCHHHHh
Confidence 999999988764
No 186
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.6e-33 Score=276.36 Aligned_cols=178 Identities=26% Similarity=0.333 Sum_probs=139.9
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCccccCCC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~~~~~l 228 (521)
.+|+|+||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+..+++.+
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~ 103 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTL 103 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCc
Confidence 599999999999999999999999999999999999876421 136788887778889
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
|+.||+.+.....+... .+....+..+++.+||.+..++.+.
T Consensus 104 tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 145 (228)
T PRK10584 104 NALENVELPALLRGESS----------------------------------RQSRNGAKALLEQLGLGKRLDHLPA---- 145 (228)
T ss_pred CHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhhCChh----
Confidence 99999987542211100 0012245678899999877776654
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+...+ +.||++++|++|+
T Consensus 146 -~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~-~~~d~i~~l~~g~ 223 (228)
T PRK10584 146 -QLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLA-ARCDRRLRLVNGQ 223 (228)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCE
Confidence 59999999999999999999999999999999888777776666432 245566667777766 5599999999999
Q ss_pred EEEe
Q 044321 386 IVYQ 389 (521)
Q Consensus 386 iv~~ 389 (521)
+++.
T Consensus 224 i~~~ 227 (228)
T PRK10584 224 LQEE 227 (228)
T ss_pred EEec
Confidence 9753
No 187
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=4.2e-34 Score=277.58 Aligned_cols=184 Identities=24% Similarity=0.354 Sum_probs=140.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------ceeeecCCcccc--CCCCHHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------NRCDISQHDVHI--GEMTVRETL 234 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------~~~~v~q~d~~~--~~lTV~E~l 234 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+.... +.+||.||+
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l 91 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVV 91 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHH
Confidence 4699999999999999999999999999999999999877532 136888876542 348999999
Q ss_pred HHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChH
Q 044321 235 AFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGG 314 (521)
Q Consensus 235 ~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGG 314 (521)
.+........ . .... ......++.+++.+||.+..++.++ .||||
T Consensus 92 ~~~~~~~~~~--~----------------~~~~------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 136 (213)
T cd03235 92 LMGLYGHKGL--F----------------RRLS------------KADKAKVDEALERVGLSELADRQIG-----ELSGG 136 (213)
T ss_pred Hhcccccccc--c----------------cCCC------------HHHHHHHHHHHHHcCCHHHHhCCcc-----cCCHH
Confidence 8753211000 0 0000 0011245678899999876676654 59999
Q ss_pred HHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 315 QRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 315 qrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
|||||+||+||+.+|++|||||||+++|....+.+.+++.+. .++++|+++|+..++.++||++++|++| +++.|
T Consensus 137 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 137 QQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 999999999999999999999999998888777766665443 3566777788888899999999999876 66654
No 188
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=5.4e-34 Score=297.87 Aligned_cols=180 Identities=22% Similarity=0.330 Sum_probs=147.3
Q ss_pred eeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCccccCCCCHHH
Q 044321 176 DVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 176 dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~~~~~lTV~E 232 (521)
||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+||+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 94 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG 94 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHH
Confidence 99999999999999999999999999999999876421 1268899888889999999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.|+..... . .+....++++++.+||.+..++.+. .||
T Consensus 95 nl~~~~~~~~--~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS 133 (354)
T TIGR02142 95 NLRYGMKRAR--P----------------------------------SERRISFERVIELLGIGHLLGRLPG-----RLS 133 (354)
T ss_pred HHHHHhhccC--h----------------------------------hHHHHHHHHHHHHcCChhHhcCChh-----hCC
Confidence 9988643110 0 0011235678899999887777664 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
|||||||+|||||+.+|++|||||||+++|....+.+.+++.+. .++++|+++|+.+++..+||+|++|++|++++.
T Consensus 134 gGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~ 213 (354)
T TIGR02142 134 GGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAA 213 (354)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEE
Confidence 99999999999999999999999999998887766666655432 245667778888899999999999999999999
Q ss_pred cCHhHHH
Q 044321 390 GPREYVL 396 (521)
Q Consensus 390 G~~~~v~ 396 (521)
|+++++.
T Consensus 214 g~~~~~~ 220 (354)
T TIGR02142 214 GPIAEVW 220 (354)
T ss_pred CCHHHHh
Confidence 9998874
No 189
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.4e-33 Score=278.70 Aligned_cols=187 Identities=27% Similarity=0.376 Sum_probs=150.4
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~ 233 (521)
+.+|+|+||+|.+|++++|+||||||||||+++|+|+++|..+ ..+|++|+...++.+|+.||
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~en 92 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDN 92 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHH
Confidence 3699999999999999999999999999999999999876421 23788988888888999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+.+.....+... ......++.+++.+++....++.++ .|||
T Consensus 93 l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~ 133 (237)
T TIGR00968 93 IAFGLEIRKHPK----------------------------------AKIKARVEELLELVQLEGLGDRYPN-----QLSG 133 (237)
T ss_pred HHhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhhCChh-----hCCH
Confidence 987643221100 0001134568888999776776654 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||+||++||++|+.+|+++||||||+++|....+.+.+++.+. .+.++++++|...++.++||++++|++|++++.|
T Consensus 134 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~ 213 (237)
T TIGR00968 134 GQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIG 213 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEec
Confidence 9999999999999999999999999999888777777666543 2456666677888889999999999999999999
Q ss_pred CHhHHH
Q 044321 391 PREYVL 396 (521)
Q Consensus 391 ~~~~v~ 396 (521)
+.+++.
T Consensus 214 ~~~~~~ 219 (237)
T TIGR00968 214 SPDEVY 219 (237)
T ss_pred CHHHHH
Confidence 988774
No 190
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=4.7e-34 Score=280.98 Aligned_cols=185 Identities=24% Similarity=0.293 Sum_probs=146.0
Q ss_pred eeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------ceeeecCCccccCCCCHHHHHHHHHH
Q 044321 174 LKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------NRCDISQHDVHIGEMTVRETLAFSAR 239 (521)
Q Consensus 174 L~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------~~~~v~q~d~~~~~lTV~E~l~f~~~ 239 (521)
|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..+++.+||.||+.+...
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 5799999999999999999999999999999999877532 12688898888888999999987532
Q ss_pred hccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHH
Q 044321 240 CQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRV 319 (521)
Q Consensus 240 ~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRv 319 (521)
...... .. .+....+..+++.+||.+..++.++ .|||||||||
T Consensus 81 ~~~~~~---------------------~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv 123 (230)
T TIGR01184 81 RVLPDL---------------------SK-----------SERRAIVEEHIALVGLTEAADKRPG-----QLSGGMKQRV 123 (230)
T ss_pred hcccCC---------------------CH-----------HHHHHHHHHHHHHcCCHHHHcCChh-----hCCHHHHHHH
Confidence 100000 00 0111235668899999877776665 5999999999
Q ss_pred HHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHH
Q 044321 320 TTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYV 395 (521)
Q Consensus 320 aIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v 395 (521)
+||+||+.+|++|||||||+++|....+.+.+++.+. .+.+||+++|+..++.++||+|++|++|++++.|+..++
T Consensus 124 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 124 AIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 9999999999999999999998887777776665442 355667777888889999999999999999999865543
No 191
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-34 Score=266.22 Aligned_cols=206 Identities=23% Similarity=0.293 Sum_probs=161.3
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCce----------------------------
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNR---------------------------- 215 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~---------------------------- 215 (521)
+.++++...+|++||+..+.|+++.|+|.|||||||+|+||+-+..|+.+..
T Consensus 12 lHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~ 91 (256)
T COG4598 12 LHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRL 91 (256)
T ss_pred HHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHH
Confidence 3566778899999999999999999999999999999999998877753110
Q ss_pred ----eeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHH
Q 044321 216 ----CDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILK 291 (521)
Q Consensus 216 ----~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~ 291 (521)
+.|+|+..++.+|||.||+.-+.. ......+.+..++++.+|.
T Consensus 92 Rs~L~mVFQ~FNLWsHmtvLeNViEaPv---------------------------------hVLg~~k~ea~e~Ae~~L~ 138 (256)
T COG4598 92 RTRLGMVFQHFNLWSHMTVLENVIEAPV---------------------------------HVLGVSKAEAIERAEKYLA 138 (256)
T ss_pred HHHhhHhhhhcchhHHHHHHHHHHhcch---------------------------------HhhcCCHHHHHHHHHHHHH
Confidence 566777777777777777644321 1111222333445677899
Q ss_pred HcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHH----HHHHHHHcCCeEEEEEecC
Q 044321 292 ILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNS----LRQFIHILEGTILISLLQP 367 (521)
Q Consensus 292 ~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~----L~~l~~~~~~t~ii~i~h~ 367 (521)
.+||.+..|.++. .|||||+||++|||||+..|+++++||||+++|++.+-. +++++.+ ++|+++ +||.
T Consensus 139 kVGi~ek~~~YP~-----~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE-grTMv~-VTHE 211 (256)
T COG4598 139 KVGIAEKADAYPA-----HLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE-GRTMVV-VTHE 211 (256)
T ss_pred HhCchhhhhcCcc-----ccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh-CCeEEE-Eeee
Confidence 9999998887665 599999999999999999999999999999998876544 4555442 555555 5688
Q ss_pred hhHHHhhcCeEEEEeCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHH
Q 044321 368 APETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQ 417 (521)
Q Consensus 368 ~~~~~~l~D~VivL~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~ 417 (521)
+..+.+...+|++|++|.|-++|+|+++ |..|.......|+.
T Consensus 212 M~FAR~Vss~v~fLh~G~iEE~G~P~qv--------f~nP~S~RlkqFls 253 (256)
T COG4598 212 MGFARDVSSHVIFLHQGKIEEEGPPEQV--------FGNPQSPRLKQFLS 253 (256)
T ss_pred hhHHHhhhhheEEeecceecccCChHHH--------hcCCCCHHHHHHHH
Confidence 8889999999999999999999999999 67788777777764
No 192
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-33 Score=278.46 Aligned_cols=187 Identities=18% Similarity=0.233 Sum_probs=141.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC--CC---C---------------------CceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD--SS---L---------------------KNRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~--~~---~---------------------~~~~~v~q~d~~ 224 (521)
+.+|+|+||+|.+|++++|+|||||||||||++|+|+++ |. . ...+|++|+...
T Consensus 18 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (252)
T PRK14255 18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNP 97 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCcc
Confidence 369999999999999999999999999999999999864 21 0 113688888777
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC----cccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD----VCAD 300 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 300 (521)
++ .|+.+|+.+.....+..... .....+...++.+++. +..+
T Consensus 98 ~~-~tv~~nl~~~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~l~~~i~~~~~ 143 (252)
T PRK14255 98 FP-FSIYENVIYGLRLAGVKDKA---------------------------------VLDEAVETSLKQAAIWDEVKDHLH 143 (252)
T ss_pred CC-CcHHHHHHHHHHHcCCCCHH---------------------------------HHHHHHHHHHHHcCCccchhhHHh
Confidence 76 79999998764322210000 0011223455666653 2233
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEE
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
. .+..|||||||||+||++|+.+|++|||||||+++|....+.+.+++.+. ..+++|+++|+...+.++||+|+
T Consensus 144 ~-----~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~ 218 (252)
T PRK14255 144 E-----SALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTA 218 (252)
T ss_pred c-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEE
Confidence 3 34569999999999999999999999999999998888777776666543 23566667788888999999999
Q ss_pred EEeCCEEEEecCHhHHH
Q 044321 380 LISNGHIVYQGPREYVL 396 (521)
Q Consensus 380 vL~~G~iv~~G~~~~v~ 396 (521)
+|++|+++..|++.++.
T Consensus 219 ~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 219 FFLTGNLIEFADTKQMF 235 (252)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999988773
No 193
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-33 Score=273.36 Aligned_cols=160 Identities=41% Similarity=0.678 Sum_probs=129.5
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC---CCCC------------------ceeeecCCccccCC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD---SSLK------------------NRCDISQHDVHIGE 227 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~---~~~~------------------~~~~v~q~d~~~~~ 227 (521)
+++.+|+|+||+|++|++++|+||||||||||+++|+|+++ |..+ ..+|++|++.+++.
T Consensus 18 ~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 97 (202)
T cd03233 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPT 97 (202)
T ss_pred CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCC
Confidence 34579999999999999999999999999999999999987 3321 12678888878888
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCcc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI 307 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 307 (521)
+||+||+.++.... .+ ..
T Consensus 98 ~tv~~~l~~~~~~~---------------------------------------------------------~~-----~~ 115 (202)
T cd03233 98 LTVRETLDFALRCK---------------------------------------------------------GN-----EF 115 (202)
T ss_pred CcHHHHHhhhhhhc---------------------------------------------------------cc-----cc
Confidence 89999887642100 12 23
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc----CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL----EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~----~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+..||||||||++||+||+.+|++|||||||+++|....+.+.+++.+. +.|+|+++||+.+++.++||++++|++
T Consensus 116 ~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~ 195 (202)
T cd03233 116 VRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE 195 (202)
T ss_pred hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC
Confidence 3469999999999999999999999999999998887666666655432 346677777877889999999999999
Q ss_pred CEEEEec
Q 044321 384 GHIVYQG 390 (521)
Q Consensus 384 G~iv~~G 390 (521)
|++++.|
T Consensus 196 G~i~~~g 202 (202)
T cd03233 196 GRQIYYG 202 (202)
T ss_pred CEEEecC
Confidence 9998765
No 194
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-33 Score=278.16 Aligned_cols=191 Identities=21% Similarity=0.298 Sum_probs=145.1
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CC---------------------CceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SL---------------------KNRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~---------------------~~~~~v~q~d~~ 224 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|++++ .. ...+|++|++.+
T Consensus 16 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14262 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTP 95 (250)
T ss_pred ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCcc
Confidence 3699999999999999999999999999999999998763 11 013678887776
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++ +|++||+.+.....+.... ......++++++.+|+....+.. .
T Consensus 96 ~~-~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~-~ 140 (250)
T PRK14262 96 FP-MSIYDNVAFGPRIHGVKSK---------------------------------HKLDRIVEESLKKAALWDEVKSE-L 140 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCCCcH---------------------------------HHHHHHHHHHHHHcCCCchhHHH-H
Confidence 66 8999999876432211000 00112345567777875321111 1
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+..+..||||||||++||+||+.+|++|||||||+++|......+.+++.+. .++++++++|+...+..+||+|++|++
T Consensus 141 ~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~ 220 (250)
T PRK14262 141 NKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYR 220 (250)
T ss_pred hCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 2345579999999999999999999999999999999888777777666543 245677777888888999999999999
Q ss_pred CEEEEecCHhHHH
Q 044321 384 GHIVYQGPREYVL 396 (521)
Q Consensus 384 G~iv~~G~~~~v~ 396 (521)
|+++..|+++++.
T Consensus 221 G~i~~~g~~~~~~ 233 (250)
T PRK14262 221 GELIEYGPTREIV 233 (250)
T ss_pred CEEEEecCHHHHH
Confidence 9999999988874
No 195
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-33 Score=282.58 Aligned_cols=205 Identities=22% Similarity=0.275 Sum_probs=152.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CCC--------------------ceeeecCCcccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SLK--------------------NRCDISQHDVHI 225 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~~--------------------~~~~v~q~d~~~ 225 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+++| ..+ ..+|++|+...+
T Consensus 34 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~ 113 (276)
T PRK14271 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPF 113 (276)
T ss_pred EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccC
Confidence 4699999999999999999999999999999999999875 110 126888877666
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccC
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGD 305 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 305 (521)
+ +|+++|+.+......... . .+....+..+++.+||....++.. +
T Consensus 114 ~-~tv~eni~~~~~~~~~~~----------------------~-----------~~~~~~~~~~l~~~~l~~~~~~~l-~ 158 (276)
T PRK14271 114 P-MSIMDNVLAGVRAHKLVP----------------------R-----------KEFRGVAQARLTEVGLWDAVKDRL-S 158 (276)
T ss_pred C-ccHHHHHHHHHHhccCCC----------------------H-----------HHHHHHHHHHHHHcCCCchhhhHh-h
Confidence 6 899999987532211000 0 001113355778888865332221 1
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
..+..|||||||||+|||||+.+|++|||||||+++|....+.+.+++.+. ..++||+++|+.+++.++||++++|++|
T Consensus 159 ~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G 238 (276)
T PRK14271 159 DSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDG 238 (276)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 234569999999999999999999999999999999888777776666543 2356677788888899999999999999
Q ss_pred EEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHHH
Q 044321 385 HIVYQGPREYVLEFFKFMGFECPKRKGVADFLQE 418 (521)
Q Consensus 385 ~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~ 418 (521)
++++.|+++++.+ .|.....++|+.+
T Consensus 239 ~i~~~g~~~~~~~--------~~~~~~~~~~~~~ 264 (276)
T PRK14271 239 RLVEEGPTEQLFS--------SPKHAETARYVAG 264 (276)
T ss_pred EEEEeCCHHHHHh--------CcCcHHHHHHHhh
Confidence 9999999988742 4444455555544
No 196
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.7e-34 Score=265.46 Aligned_cols=183 Identities=26% Similarity=0.356 Sum_probs=152.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------ceeeecCCccccCCCCHHHHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------NRCDISQHDVHIGEMTVRETLAF 236 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------~~~~v~q~d~~~~~lTV~E~l~f 236 (521)
..+|+|||++|.+|+.++++||||||||||||+++|+.+|..+ ..+.|+|++.++|.+||.+|++|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvaf 97 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAF 97 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHH
Confidence 4599999999999999999999999999999999999988632 23789999999999999999999
Q ss_pred HHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHH
Q 044321 237 SARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQR 316 (521)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqr 316 (521)
+.++.|+... +...++..++..+||.+..+.++- .||||||
T Consensus 98 gL~l~Gi~k~----------------------------------~R~~~a~q~l~~VgL~~~~~~~i~-----qLSGGmr 138 (259)
T COG4525 98 GLQLRGIEKA----------------------------------QRREIAHQMLALVGLEGAEHKYIW-----QLSGGMR 138 (259)
T ss_pred HHHhcCCCHH----------------------------------HHHHHHHHHHHHhCcccccccceE-----eecchHH
Confidence 9998887432 112356678899999988776654 5999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCChhhHH----HHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEe--CCEEEEec
Q 044321 317 KRVTTGEMLVGPAQALFMDEISNSTTF----QIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILIS--NGHIVYQG 390 (521)
Q Consensus 317 QRvaIAraLv~~P~iLlLDEPTs~~~~----~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~--~G~iv~~G 390 (521)
|||.|||||+.+|++|+||||+.++|. ++...|.++.+..+ ..++.+||+.+++.-+++++++|+ .|+|+..-
T Consensus 139 QRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tg-k~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~ 217 (259)
T COG4525 139 QRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETG-KQVLLITHDIEEALFLATRLVVLSPGPGRVVERL 217 (259)
T ss_pred HHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhC-CeEEEEeccHHHHHhhhheeEEecCCCceeeEec
Confidence 999999999999999999999996554 45555555555444 445556789999999999999998 48999887
Q ss_pred CHh
Q 044321 391 PRE 393 (521)
Q Consensus 391 ~~~ 393 (521)
+++
T Consensus 218 ~~d 220 (259)
T COG4525 218 PLD 220 (259)
T ss_pred CCC
Confidence 766
No 197
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-33 Score=282.83 Aligned_cols=185 Identities=19% Similarity=0.227 Sum_probs=141.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CCC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SLK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|++.+ ..+ ..+|++|+...
T Consensus 33 ~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l 112 (274)
T PRK14265 33 FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNP 112 (274)
T ss_pred eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCcc
Confidence 3699999999999999999999999999999999998752 110 12678887766
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC----cccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD----VCAD 300 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 300 (521)
++ .||.+|+.+.....+... . ....+..+++.+++. +..+
T Consensus 113 ~~-~tv~~nl~~~~~~~~~~~------~-----------------------------~~~~~~~~l~~~~l~~~l~~~~~ 156 (274)
T PRK14265 113 FP-KSIYENIAFAPRANGYKG------N-----------------------------LDELVEDSLRRAAIWEEVKDKLK 156 (274)
T ss_pred cc-ccHHHHHHhHHHhcCchH------H-----------------------------HHHHHHHHHHHcccchhhHHHhc
Confidence 65 499999987543211100 0 001123355666653 2233
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEE
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
+ .+..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. ++++|++++|+...+.++||+++
T Consensus 157 ~-----~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~ 231 (274)
T PRK14265 157 E-----KGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTA 231 (274)
T ss_pred C-----CcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 3 34569999999999999999999999999999999988888877777554 24667777888889999999999
Q ss_pred EEe---------CCEEEEecCHhHHH
Q 044321 380 LIS---------NGHIVYQGPREYVL 396 (521)
Q Consensus 380 vL~---------~G~iv~~G~~~~v~ 396 (521)
+|+ +|++++.|+++++.
T Consensus 232 ~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 232 FFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred EEecccccccccCceEEEeCCHHHHH
Confidence 998 89999999999884
No 198
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-33 Score=279.71 Aligned_cols=187 Identities=20% Similarity=0.224 Sum_probs=143.4
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC-----CC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS-----LK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~-----~~---------------------~~~~v~q~d~~ 224 (521)
..+|+|+||+|++|++++|+|+||||||||+++|+|+++++ .+ ..+|++|+...
T Consensus 20 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 99 (259)
T PRK14260 20 SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNP 99 (259)
T ss_pred eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEeccccc
Confidence 35999999999999999999999999999999999987631 10 12678887766
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC----cccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD----VCAD 300 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 300 (521)
++ +|+.||+.+.....+.... .+....+..+++.+|+. +..+
T Consensus 100 ~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~~ 145 (259)
T PRK14260 100 FP-MSIYENVAYGVRISAKLPQ---------------------------------ADLDEIVESALKGAALWQEVKDKLN 145 (259)
T ss_pred CC-ccHHHHHHHHHHHhcCCCH---------------------------------HHHHHHHHHHHHHcCCcchhhhHhc
Confidence 76 8999999876432110000 00112344567777773 2334
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEE
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
+ .+..|||||||||+|||||+.+|++|||||||+++|......+.+++... ...+|++++|+.+++.++||+++
T Consensus 146 ~-----~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~ 220 (259)
T PRK14260 146 K-----SALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTA 220 (259)
T ss_pred C-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEE
Confidence 3 34569999999999999999999999999999999887777776666543 23566677788899999999999
Q ss_pred EEe-----CCEEEEecCHhHHH
Q 044321 380 LIS-----NGHIVYQGPREYVL 396 (521)
Q Consensus 380 vL~-----~G~iv~~G~~~~v~ 396 (521)
+|+ +|++++.|+++++.
T Consensus 221 ~l~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 221 FFSTDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred EEeccCCCCceEEEeCCHHHHh
Confidence 998 59999999999873
No 199
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=9.9e-34 Score=339.27 Aligned_cols=239 Identities=22% Similarity=0.273 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCC---C--CceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhh
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGIS---L--PTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFL 158 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~---~--~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l 158 (521)
.+.++.+.+|+.++++..++. ... +..+.. . ....|+|+||+|.|..
T Consensus 1126 ~~~a~~a~~ri~~ll~~~~~~-----~~~-~~~~~~~~~~~~~~g~I~f~nVsF~Y~~---------------------- 1177 (1466)
T PTZ00265 1126 SENAKLSFEKYYPLIIRKSNI-----DVR-DNGGIRIKNKNDIKGKIEIMDVNFRYIS---------------------- 1177 (1466)
T ss_pred HHHHHHHHHHHHHHHCCCCcC-----CCC-CCcccccccCCCCCceEEEEEEEEECCC----------------------
Confidence 567778889999988765431 000 011111 1 1246999999999731
Q ss_pred hhcccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC---------------------------
Q 044321 159 NSLNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS--------------------------- 211 (521)
Q Consensus 159 ~~~~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~--------------------------- 211 (521)
....+||+||||+|+||+.+||+||||||||||+++|.|+++|.
T Consensus 1178 ---------~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 (1466)
T PTZ00265 1178 ---------RPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQ 1248 (1466)
T ss_pred ---------CCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccc
Confidence 11236999999999999999999999999999999999999972
Q ss_pred --------------------------CCc--------------------eeeecCCccccCCCCHHHHHHHHHHhccCch
Q 044321 212 --------------------------LKN--------------------RCDISQHDVHIGEMTVRETLAFSARCQGVGS 245 (521)
Q Consensus 212 --------------------------~~~--------------------~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~ 245 (521)
..+ .+||+|++.+| ..|++|||.|+..
T Consensus 1249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIreNI~~g~~------ 1321 (1466)
T PTZ00265 1249 NVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIYENIKFGKE------ 1321 (1466)
T ss_pred ccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHHHHHhcCCC------
Confidence 111 17899987554 7999999998621
Q ss_pred hhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHH
Q 044321 246 RYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEML 325 (521)
Q Consensus 246 ~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraL 325 (521)
+.+.+.+.+++...+ ..+.+ ..|++.+||.||+ .+..||||||||++|||||
T Consensus 1322 -------------------~at~eeI~~A~k~A~-----l~~fI---~~LP~GydT~VGe-~G~~LSGGQkQRIaIARAL 1373 (1466)
T PTZ00265 1322 -------------------DATREDVKRACKFAA-----IDEFI---ESLPNKYDTNVGP-YGKSLSGGQKQRIAIARAL 1373 (1466)
T ss_pred -------------------CCCHHHHHHHHHHcC-----CHHHH---HhCccccCCccCC-CCCcCCHHHHHHHHHHHHH
Confidence 112222222222211 12332 2489999999996 5567999999999999999
Q ss_pred cCCCcEEEEeCCChhhHHHHHHHHHHHHHHc----CCeEEEEEecChhHHHhhcCeEEEEeC----CEEE-EecCHhHHH
Q 044321 326 VGPAQALFMDEISNSTTFQIVNSLRQFIHIL----EGTILISLLQPAPETYDLFDDIILISN----GHIV-YQGPREYVL 396 (521)
Q Consensus 326 v~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~----~~t~ii~i~h~~~~~~~l~D~VivL~~----G~iv-~~G~~~~v~ 396 (521)
+++|+||||||||+++|.+..+.+.+.+... +.|+|+++ |.. .+.+.||+|++|++ |+++ +.|++++++
T Consensus 1374 lr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIa-HRl-sti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1374 LREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIA-HRI-ASIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEe-chH-HHHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 9999999999999998887777776665543 45555554 544 56678999999999 9965 899999985
No 200
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-33 Score=280.96 Aligned_cols=190 Identities=21% Similarity=0.320 Sum_probs=149.7
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------------ceeeecCCcc
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------------NRCDISQHDV 223 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------------~~~~v~q~d~ 223 (521)
+++.+|+||||+|.+|++++|+||||||||||+++|+|+++|..+ ..+|++|+..
T Consensus 21 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~ 100 (257)
T PRK14246 21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPN 100 (257)
T ss_pred CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCc
Confidence 445799999999999999999999999999999999999876421 1268888888
Q ss_pred ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc----cc
Q 044321 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV----CA 299 (521)
Q Consensus 224 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~ 299 (521)
+++.+|+.+|+.+.....+.... .+....+.++++.+|+.. ..
T Consensus 101 ~~~~~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~l~~~~~~~~ 147 (257)
T PRK14246 101 PFPHLSIYDNIAYPLKSHGIKEK---------------------------------REIKKIVEECLRKVGLWKEVYDRL 147 (257)
T ss_pred cCCCCcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCCccchhhh
Confidence 88889999999886432111000 001123566788888853 33
Q ss_pred cccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeE
Q 044321 300 DTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDI 378 (521)
Q Consensus 300 dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~V 378 (521)
+. .+..||||||||++|||||+.+|++|||||||+++|....+.+.+++.+. ++++|++++|+...+..+||++
T Consensus 148 ~~-----~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v 222 (257)
T PRK14246 148 NS-----PASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYV 222 (257)
T ss_pred cC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEE
Confidence 43 34569999999999999999999999999999999888777777776543 2356667778888888999999
Q ss_pred EEEeCCEEEEecCHhHHH
Q 044321 379 ILISNGHIVYQGPREYVL 396 (521)
Q Consensus 379 ivL~~G~iv~~G~~~~v~ 396 (521)
++|++|+++..|+++++.
T Consensus 223 ~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 223 AFLYNGELVEWGSSNEIF 240 (257)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999998874
No 201
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-33 Score=284.10 Aligned_cols=191 Identities=27% Similarity=0.319 Sum_probs=147.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC--------CC-------------------ceeeecCCcc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS--------LK-------------------NRCDISQHDV 223 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~--------~~-------------------~~~~v~q~d~ 223 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|. .+ ..+|++|+..
T Consensus 14 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~ 93 (272)
T PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ 93 (272)
T ss_pred EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCC
Confidence 46999999999999999999999999999999999998774 21 1267888766
Q ss_pred ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccc
Q 044321 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMV 303 (521)
Q Consensus 224 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 303 (521)
.++.+||.||+.+......... +.. . .+....+..+++.+||.+..++.+
T Consensus 94 ~~~~~tv~e~l~~~~~~~~~~~---------------~~~---~------------~~~~~~~~~~l~~~~l~~~~~~~~ 143 (272)
T PRK13547 94 PAFAFSAREIVLLGRYPHARRA---------------GAL---T------------HRDGEIAWQALALAGATALVGRDV 143 (272)
T ss_pred CCCCCcHHHHHhhccccccccc---------------ccC---C------------HHHHHHHHHHHHHcCcHhhhcCCc
Confidence 5667999999987521100000 000 0 001123566888999987666555
Q ss_pred cCccCCCCChHHHHHHHHHHHHc---------CCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHH
Q 044321 304 GDEILRGISGGQRKRVTTGEMLV---------GPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPET 371 (521)
Q Consensus 304 g~~~~r~LSGGqrQRvaIAraLv---------~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~ 371 (521)
+ .|||||||||+||+||+ .+|++|||||||+++|....+.+.+++.+. .+++|++++|+...+
T Consensus 144 ~-----~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~ 218 (272)
T PRK13547 144 T-----TLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLA 218 (272)
T ss_pred c-----cCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH
Confidence 4 59999999999999999 599999999999998887777776665442 245666777888888
Q ss_pred HhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 372 YDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 372 ~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
.++||++++|++|++++.|+++++.
T Consensus 219 ~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 219 ARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred HHhCCEEEEEECCeEEEecCHHHHc
Confidence 8999999999999999999988763
No 202
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4e-33 Score=306.80 Aligned_cols=237 Identities=21% Similarity=0.268 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
.++...+.+|+.++++.+.+.. +....+.+...++|+|+++.++.
T Consensus 284 ~~~~~~~~~ri~~~l~~~~~~~--------~~~~~~~~~~~i~~~~v~~~y~~--------------------------- 328 (544)
T TIGR01842 284 FSGARQAYKRLNELLANYPSRD--------PAMPLPEPEGHLSVENVTIVPPG--------------------------- 328 (544)
T ss_pred HHHHHHHHHHHHHHHhCCcccc--------CCCCCCCCCCeEEEEEEEEEcCC---------------------------
Confidence 4777888899999887655420 00111112346999999998621
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccc
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVH 224 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~ 224 (521)
+++++|+|+||+|++|+.++|+||||||||||+++|+|+++|..+ ..+|++|++.+
T Consensus 329 -----~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~l 403 (544)
T TIGR01842 329 -----GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVEL 403 (544)
T ss_pred -----CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCccc
Confidence 123689999999999999999999999999999999999987632 12789998766
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++ .|++||+.+... +.+.+....+.... ..++.++ .|++..||.+|
T Consensus 404 f~-~ti~~Ni~~~~~-------------------------~~~~~~~~~~~~~~------~~~~~i~--~l~~gl~t~~~ 449 (544)
T TIGR01842 404 FP-GTVAENIARFGE-------------------------NADPEKIIEAAKLA------GVHELIL--RLPDGYDTVIG 449 (544)
T ss_pred cc-ccHHHHHhccCC-------------------------CCCHHHHHHHHHHh------ChHHHHH--hCccccccccC
Confidence 65 599999975321 00111111111100 1223333 34566788887
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
+ ....||||||||++|||||+.+|++|||||||+++|.+..+.+.+.+... .+.++++++|+.. ..+.||+|++|+
T Consensus 450 ~-~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~-~~~~~d~i~~l~ 527 (544)
T TIGR01842 450 P-GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS-LLGCVDKILVLQ 527 (544)
T ss_pred C-CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH-HHHhCCEEEEEE
Confidence 6 46789999999999999999999999999999998887777776665543 3344444455554 567899999999
Q ss_pred CCEEEEecCHhHHH
Q 044321 383 NGHIVYQGPREYVL 396 (521)
Q Consensus 383 ~G~iv~~G~~~~v~ 396 (521)
+|++++.|+++++.
T Consensus 528 ~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 528 DGRIARFGERDEVL 541 (544)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999998874
No 203
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.6e-33 Score=277.09 Aligned_cols=185 Identities=20% Similarity=0.229 Sum_probs=143.4
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC----CCC-----------------ceeeecCCcc--ccCCCC
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS----SLK-----------------NRCDISQHDV--HIGEMT 229 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~----~~~-----------------~~~~v~q~d~--~~~~lT 229 (521)
+|+||||+|++|++++|+||||||||||+++|+|+++| +.+ ..+|++|+.. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 57899999999999999999999999999999999887 321 1267777753 445678
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc---cccccccCc
Q 044321 230 VRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV---CADTMVGDE 306 (521)
Q Consensus 230 V~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~---~~dt~vg~~ 306 (521)
+.+++.+.....+... .+....+.++++.+||.+ ..++.+
T Consensus 81 ~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 123 (230)
T TIGR02770 81 MGNHAIETLRSLGKLS----------------------------------KQARALILEALEAVGLPDPEEVLKKYP--- 123 (230)
T ss_pred HHHHHHHHHHHcCccH----------------------------------HHHHHHHHHHHHHcCCCchHHHHhCCh---
Confidence 8888876532211100 001124567889999973 344444
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
..|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++|++++|+.+++..+||++++|++
T Consensus 124 --~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 201 (230)
T TIGR02770 124 --FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDD 201 (230)
T ss_pred --hhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 469999999999999999999999999999998887766666655432 256677778888889999999999999
Q ss_pred CEEEEecCHhHHH
Q 044321 384 GHIVYQGPREYVL 396 (521)
Q Consensus 384 G~iv~~G~~~~v~ 396 (521)
|++++.|+++++.
T Consensus 202 G~i~~~~~~~~~~ 214 (230)
T TIGR02770 202 GRIVERGTVKEIF 214 (230)
T ss_pred CEEEEeCCHHHHH
Confidence 9999999988874
No 204
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.2e-33 Score=308.64 Aligned_cols=183 Identities=23% Similarity=0.294 Sum_probs=150.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~lTV 230 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|++.|+.+ ..+|++|+..+++.+||
T Consensus 24 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 103 (510)
T PRK15439 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSV 103 (510)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcH
Confidence 4699999999999999999999999999999999999877521 13688998888889999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
.||+.|.... . .+....+.++++.+||.+..++.++ .
T Consensus 104 ~e~l~~~~~~----~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 140 (510)
T PRK15439 104 KENILFGLPK----R----------------------------------QASMQKMKQLLAALGCQLDLDSSAG-----S 140 (510)
T ss_pred HHHhhccccc----c----------------------------------hHHHHHHHHHHHHcCCCccccCChh-----h
Confidence 9999875210 0 0011235668899999887777665 4
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++||+++|+...+.++||+|++|++|++++
T Consensus 141 LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~ 220 (510)
T PRK15439 141 LEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIAL 220 (510)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999887777766665443 35667778899889999999999999999999
Q ss_pred ecCHhHHH
Q 044321 389 QGPREYVL 396 (521)
Q Consensus 389 ~G~~~~v~ 396 (521)
.|+++++.
T Consensus 221 ~g~~~~~~ 228 (510)
T PRK15439 221 SGKTADLS 228 (510)
T ss_pred ecChHHcC
Confidence 99987763
No 205
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-33 Score=280.72 Aligned_cols=191 Identities=20% Similarity=0.237 Sum_probs=143.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CCC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SLK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|++++ ..+ ..+|++|+...
T Consensus 38 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l 117 (272)
T PRK14236 38 KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNP 117 (272)
T ss_pred eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCcc
Confidence 3699999999999999999999999999999999999763 211 12688887776
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++. |+.||+.+.....+.... ......++++++.+++.....+..
T Consensus 118 ~~~-tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 162 (272)
T PRK14236 118 FPK-SIYENVVYGLRLQGINNR---------------------------------RVLDEAVERSLRGAALWDEVKDRL- 162 (272)
T ss_pred Ccc-cHHHHHHHHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCChhHHHHh-
Confidence 765 999999876432211000 000123455677777753211111
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+..+..|||||||||+|||||+.+|++|||||||+++|....+.+.+++.+. .+.++++++|+..++.++||+|++|++
T Consensus 163 ~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 242 (272)
T PRK14236 163 HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYM 242 (272)
T ss_pred hCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEEC
Confidence 2334569999999999999999999999999999999888777777666543 235666677888888999999999999
Q ss_pred CEEEEecCHhHHH
Q 044321 384 GHIVYQGPREYVL 396 (521)
Q Consensus 384 G~iv~~G~~~~v~ 396 (521)
|++++.|+++++.
T Consensus 243 G~i~~~g~~~~~~ 255 (272)
T PRK14236 243 GKLVEYGDTDTLF 255 (272)
T ss_pred CEEEecCCHHHHh
Confidence 9999999988763
No 206
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-33 Score=279.47 Aligned_cols=190 Identities=21% Similarity=0.234 Sum_probs=143.9
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC-----CC---------------------ceeeecCCcccc
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS-----LK---------------------NRCDISQHDVHI 225 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~-----~~---------------------~~~~v~q~d~~~ 225 (521)
.+|+||||+|++|++++|+|||||||||||++|+|+++|+ .+ ..+|++|+..++
T Consensus 21 ~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~ 100 (261)
T PRK14258 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLF 100 (261)
T ss_pred eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccC
Confidence 5999999999999999999999999999999999998763 10 125667766666
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccC
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGD 305 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 305 (521)
+ +|+.||+.+.....+.... .+....+..+++.+++.+..+... +
T Consensus 101 ~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 145 (261)
T PRK14258 101 P-MSVYDNVAYGVKIVGWRPK---------------------------------LEIDDIVESALKDADLWDEIKHKI-H 145 (261)
T ss_pred c-ccHHHHHHHHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCcchhhhHh-c
Confidence 6 8999998775322111000 001123456778888754221111 2
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
..+..|||||||||+||++|+.+|++|||||||+++|......+.+++.+. .+++||+++|+..++.++||+|++|+
T Consensus 146 ~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~ 225 (261)
T PRK14258 146 KSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFK 225 (261)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEc
Confidence 344569999999999999999999999999999999888777766665442 35666667788889999999999999
Q ss_pred C-----CEEEEecCHhHHH
Q 044321 383 N-----GHIVYQGPREYVL 396 (521)
Q Consensus 383 ~-----G~iv~~G~~~~v~ 396 (521)
+ |++++.|+++++.
T Consensus 226 ~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 226 GNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred cCCCcCceEEEeCCHHHHH
Confidence 9 9999999999884
No 207
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1.4e-33 Score=276.54 Aligned_cols=186 Identities=23% Similarity=0.265 Sum_probs=142.1
Q ss_pred cCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeec-------C-CccccCCCCHHHHHHH
Q 044321 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDIS-------Q-HDVHIGEMTVRETLAF 236 (521)
Q Consensus 165 ~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~-------q-~d~~~~~lTV~E~l~f 236 (521)
..+++.+++|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..++. + ...+.+.+||.||+.+
T Consensus 29 ~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~~~~~~~~tv~enl~~ 107 (224)
T cd03220 29 KGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSG-TVTVRGRVSSLLGLGGGFNPELTGRENIYL 107 (224)
T ss_pred hhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEchhhcccccCCCCCcHHHHHHH
Confidence 4455667899999999999999999999999999999999999887532 22221 1 2335567899999987
Q ss_pred HHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHH
Q 044321 237 SARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQR 316 (521)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqr 316 (521)
.....+... .+....+..+++.+||.+..++.++ .||||||
T Consensus 108 ~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~ 148 (224)
T cd03220 108 NGRLLGLSR----------------------------------KEIDEKIDEIIEFSELGDFIDLPVK-----TYSSGMK 148 (224)
T ss_pred HHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHH
Confidence 643211100 0011234567888999887777665 5999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 317 KRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 317 QRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
|||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+..++..+||++++|++|++++.|
T Consensus 149 qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 149 ARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999998887655555544332 3456677788888889999999999999998765
No 208
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-33 Score=282.46 Aligned_cols=187 Identities=20% Similarity=0.300 Sum_probs=144.1
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC--C---CC---------------------CceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD--S---SL---------------------KNRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~--~---~~---------------------~~~~~v~q~d~~ 224 (521)
..+|+|+||+|++|++++|+|||||||||||++|+|+.. | .. ...+|++|+...
T Consensus 52 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 131 (286)
T PRK14275 52 FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNP 131 (286)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCC
Confidence 359999999999999999999999999999999999753 2 21 013688888776
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC----cccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD----VCAD 300 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~----~~~d 300 (521)
++ .||.||+.|.....+.... ......+..+++.+|+. +..+
T Consensus 132 ~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~~ 177 (286)
T PRK14275 132 FP-KSIFDNIAYGPRLHGINDK---------------------------------KQLEEIVEKSLRKAALWDEVSDRLD 177 (286)
T ss_pred Cc-cCHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHhCCccchhhHhh
Confidence 66 4999999886432211000 00112344567777763 2334
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEE
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
+. +..|||||||||+||+||+.+|++|||||||+++|....+.+.+++++. ++.+||+++|+..++.++||+++
T Consensus 178 ~~-----~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~ 252 (286)
T PRK14275 178 KN-----ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTM 252 (286)
T ss_pred CC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEE
Confidence 33 4569999999999999999999999999999999988887777776554 33567777888888999999999
Q ss_pred EEeCCEEEEecCHhHHH
Q 044321 380 LISNGHIVYQGPREYVL 396 (521)
Q Consensus 380 vL~~G~iv~~G~~~~v~ 396 (521)
+|++|++++.|+++++.
T Consensus 253 ~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 253 FFYEGVLVEHAPTAQLF 269 (286)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988873
No 209
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.9e-33 Score=273.19 Aligned_cols=180 Identities=20% Similarity=0.276 Sum_probs=143.7
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHHHH
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRETLA 235 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~l~ 235 (521)
+++|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..+++.+|+.||+.
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~ 92 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIG 92 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHH
Confidence 45799999999999999999999999999999999877521 1368899888888899999998
Q ss_pred HHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHH
Q 044321 236 FSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQ 315 (521)
Q Consensus 236 f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGq 315 (521)
+....... .. .+....++++++.+||.+..++.+. .|||||
T Consensus 93 ~~~~~~~~-~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 133 (213)
T TIGR01277 93 LGLHPGLK-LN---------------------------------AEQQEKVVDAAQQVGIADYLDRLPE-----QLSGGQ 133 (213)
T ss_pred hHhhccCC-cc---------------------------------HHHHHHHHHHHHHcCcHHHhhCCcc-----cCCHHH
Confidence 75321000 00 0011234668899999877776654 599999
Q ss_pred HHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecC
Q 044321 316 RKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQGP 391 (521)
Q Consensus 316 rQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~ 391 (521)
||||+||+||+.+|+++||||||+++|....+.+.+++.+. .+++|++++|+..++.++||++++|++|++++.|.
T Consensus 134 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 134 RQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999999998888777666655443 25677777888888889999999999999998875
No 210
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.2e-33 Score=302.27 Aligned_cols=204 Identities=30% Similarity=0.360 Sum_probs=155.5
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCce---------------------eeecCC--ccccC
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNR---------------------CDISQH--DVHIG 226 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~---------------------~~v~q~--d~~~~ 226 (521)
...+++||||+|++||+++|+|+||||||||.++|+|+++|+.+.. -+|+|+ ..+.|
T Consensus 303 ~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnP 382 (539)
T COG1123 303 EVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNP 382 (539)
T ss_pred ceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCc
Confidence 4579999999999999999999999999999999999998853211 233333 34566
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCc
Q 044321 227 EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDE 306 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 306 (521)
.+||.+++.-......... ..+.+++++++|+.+||+.. ..++
T Consensus 383 r~tV~~~i~epL~~~~~~~---------------------------------~~~~~~rv~~ll~~VgL~~~----~l~r 425 (539)
T COG1123 383 RMTVGDILAEPLRIHGGGS---------------------------------GAERRARVAELLELVGLPPE----FLDR 425 (539)
T ss_pred cccHHHHHHhHHhhhcccc---------------------------------hHHHHHHHHHHHHHcCCCHH----HHhc
Confidence 7777777766544322110 12233467889999999852 2335
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhH----HHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTT----FQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~----~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
++.+|||||||||+|||||+.+|++|++||||+.+| .++.+.|+++.+++ +.+.++++|+...+..+||+|++|+
T Consensus 426 yP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~-g~t~lfISHDl~vV~~i~drv~vm~ 504 (539)
T COG1123 426 YPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEEL-GLTYLFISHDLAVVRYIADRVAVMY 504 (539)
T ss_pred CchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHh-CCEEEEEeCCHHHHHhhCceEEEEE
Confidence 566799999999999999999999999999999655 56666666665554 4556667899999999999999999
Q ss_pred CCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHHHh
Q 044321 383 NGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQEV 419 (521)
Q Consensus 383 ~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~v 419 (521)
+|+||+.|+.+++ |..|.+..+..++..+
T Consensus 505 ~G~iVE~G~~~~v--------~~~p~h~Ytr~L~~av 533 (539)
T COG1123 505 DGRIVEEGPTEKV--------FENPQHPYTRKLLAAV 533 (539)
T ss_pred CCeEEEeCCHHHH--------hcCCCChHHHHHHHhc
Confidence 9999999999988 5677776665555443
No 211
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.8e-34 Score=294.50 Aligned_cols=237 Identities=23% Similarity=0.317 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
.|..-.-+|++++++++++| +.+....-....++..|.|+|++|.++
T Consensus 502 iQ~nfiDmEnmfdllkee~e-----Vvd~P~a~pl~~~~G~i~fsnvtF~Y~---------------------------- 548 (790)
T KOG0056|consen 502 IQKNFIDMENMFDLLKEEPE-----VVDLPGAPPLKVTQGKIEFSNVTFAYD---------------------------- 548 (790)
T ss_pred HHHhhhhHHHHHHHhhcCch-----hhcCCCCCCccccCCeEEEEEeEEecC----------------------------
Confidence 56666778999999999988 444433334445677999999999973
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccc
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVH 224 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~ 224 (521)
.++++|+||||++.||+.+||+||||+||||+|++|-.+.+.+.+ ..+.|||+..+
T Consensus 549 -----p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvL 623 (790)
T KOG0056|consen 549 -----PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVL 623 (790)
T ss_pred -----CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCccee
Confidence 345799999999999999999999999999999999998875421 12677886655
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++-|+..||.|+ +|.+..+++..++..+ .+.|. ++++++.++|+||
T Consensus 624 -FNdTI~yNIrya-------------------------k~~AsneevyaAAkAA-----~IHdr---Il~fPegY~t~VG 669 (790)
T KOG0056|consen 624 -FNDTILYNIRYA-------------------------KPSASNEEVYAAAKAA-----QIHDR---ILQFPEGYNTRVG 669 (790)
T ss_pred -ecceeeeheeec-------------------------CCCCChHHHHHHHHHh-----hHHHH---HhcCchhhhhhhh
Confidence 457888888875 3344444444433222 23444 5679999999999
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChh----hHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEE
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNS----TTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~----~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
++..+ |||||||||+|||+++..|.+++|||.|++ +..+|...|.+++. ++|+|++.|.- .+.-.+|.|++
T Consensus 670 ERGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRL--STivnAD~ILv 744 (790)
T KOG0056|consen 670 ERGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRL--STIVNADLILV 744 (790)
T ss_pred hcccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeee--hheecccEEEE
Confidence 86554 999999999999999999999999999995 55677777777764 68888877653 35557999999
Q ss_pred EeCCEEEEecCHhHHHH
Q 044321 381 ISNGHIVYQGPREYVLE 397 (521)
Q Consensus 381 L~~G~iv~~G~~~~v~~ 397 (521)
+++|+|++.|.+++++.
T Consensus 745 i~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 745 ISNGRIVERGRHEELLK 761 (790)
T ss_pred EeCCeEeecCcHHHHHh
Confidence 99999999999999864
No 212
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-33 Score=276.20 Aligned_cols=192 Identities=19% Similarity=0.259 Sum_probs=144.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC--C---CCC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD--S---SLK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~--~---~~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+|+||+|.+|++++|+||||||||||+++|+|+.. | ..+ ..+|++|+...
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 469999999999999999999999999999999999875 2 111 12688888766
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++. |+.||+.+........... ......+..+++.+||.+...+.+
T Consensus 98 ~~~-tv~~ni~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 143 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHGLAKNK--------------------------------KKLDEIVEKSLTSVGLWEELGDRL- 143 (251)
T ss_pred ccC-CHHHHHHHHHHhcCCCCCH--------------------------------HHHHHHHHHHHHHcCCCchhhhHh-
Confidence 664 9999988763221110000 001123456788899865322222
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+..+..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+.+|++++|+...+.++||+|++|++
T Consensus 144 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~ 223 (251)
T PRK14244 144 KDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQS 223 (251)
T ss_pred hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEEC
Confidence 1234569999999999999999999999999999998887777776666543 245667777888888999999999999
Q ss_pred CEEEEecCHhHHH
Q 044321 384 GHIVYQGPREYVL 396 (521)
Q Consensus 384 G~iv~~G~~~~v~ 396 (521)
|++++.|+++++.
T Consensus 224 G~i~~~~~~~~~~ 236 (251)
T PRK14244 224 GRIVEYNTTQEIF 236 (251)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988763
No 213
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=308.47 Aligned_cols=190 Identities=22% Similarity=0.318 Sum_probs=150.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~lTV 230 (521)
+.+|+||||+|.+|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+||
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 96 (501)
T PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTI 96 (501)
T ss_pred eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcH
Confidence 4699999999999999999999999999999999999877421 13688998888889999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
+||+.|+......... . +. .+....+.++++.+||.+..+..++ .
T Consensus 97 ~e~l~~~~~~~~~~~~------~-------------~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 141 (501)
T PRK10762 97 AENIFLGREFVNRFGR------I-------------DW-----------KKMYAEADKLLARLNLRFSSDKLVG-----E 141 (501)
T ss_pred HHHhhhccccccccCc------c-------------CH-----------HHHHHHHHHHHHHcCCCCCccCchh-----h
Confidence 9999886422100000 0 00 0012245678999999887777665 4
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++||+++|+.+++..+||+|++|++|+++.
T Consensus 142 LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~ 221 (501)
T PRK10762 142 LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIA 221 (501)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence 9999999999999999999999999999998887776666555432 35567777889899999999999999999999
Q ss_pred ecCHhHH
Q 044321 389 QGPREYV 395 (521)
Q Consensus 389 ~G~~~~v 395 (521)
.|+++++
T Consensus 222 ~~~~~~~ 228 (501)
T PRK10762 222 EREVADL 228 (501)
T ss_pred ecCcCcC
Confidence 9987654
No 214
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-33 Score=277.34 Aligned_cols=191 Identities=19% Similarity=0.222 Sum_probs=144.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC--C---CC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS--S---LK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~--~---~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|++.+ . .+ ..+|++|+..+
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 98 (253)
T PRK14261 19 KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNP 98 (253)
T ss_pred eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCcc
Confidence 3699999999999999999999999999999999998642 1 00 12688888777
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++ .||+||+.|.....+.... ......+..+++.+++.+...+..
T Consensus 99 ~~-~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~- 143 (253)
T PRK14261 99 FP-KSIYENVAYGPRIHGEKNK---------------------------------KTLDTIVEKSLKGAALWDEVKDRL- 143 (253)
T ss_pred Cc-ccHHHHHHhhHHhcCCCCH---------------------------------HHHHHHHHHHHHHhcCchhhHHHh-
Confidence 76 5999999886443211000 001113345667777643211111
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+..+..|||||||||+||+||+.+|+++||||||+++|....+.+.+++... .+.++++++|+..++.++||++++|++
T Consensus 144 ~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~ 223 (253)
T PRK14261 144 HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYL 223 (253)
T ss_pred hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEEC
Confidence 2344569999999999999999999999999999999988887777776543 235666777888888899999999999
Q ss_pred CEEEEecCHhHHH
Q 044321 384 GHIVYQGPREYVL 396 (521)
Q Consensus 384 G~iv~~G~~~~v~ 396 (521)
|+++..|+++++.
T Consensus 224 G~i~~~g~~~~~~ 236 (253)
T PRK14261 224 GKLIEFDKTTQIF 236 (253)
T ss_pred CEEEEcCCHHHHH
Confidence 9999999988773
No 215
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-33 Score=297.77 Aligned_cols=231 Identities=21% Similarity=0.290 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
..+...++.|+-++++++++... +...++.+...+.++||+|+++.
T Consensus 303 lgq~~~Sa~Rl~~i~~q~~e~~~-------~~~~~~~~~~~l~~~~vsF~y~~--------------------------- 348 (573)
T COG4987 303 LGQVIASARRLNDILDQKPEVTF-------PDEQTATTGQALELRNVSFTYPG--------------------------- 348 (573)
T ss_pred hhHHHHHHHHHhhhccCCcccCC-------CccccCCccceeeeccceeecCC---------------------------
Confidence 45566778888888888887321 11112222226899999998742
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCce-------------------eeecCCccc
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNR-------------------CDISQHDVH 224 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~-------------------~~v~q~d~~ 224 (521)
.+.++|+|+||++++||.++|+|+||||||||+++|+|.++|+.+.. +.++| ..|
T Consensus 349 -----~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Q-r~h 422 (573)
T COG4987 349 -----QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQ-RVH 422 (573)
T ss_pred -----CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhcc-chH
Confidence 22369999999999999999999999999999999999888763211 22333 456
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcC-------CCc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILG-------LDV 297 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg-------L~~ 297 (521)
++..|+++|+.++ +|+.+.+.... +++.+| .++
T Consensus 423 lF~~Tlr~NL~lA-------------------------~~~AsDEel~~---------------aL~qvgL~~l~~~~p~ 462 (573)
T COG4987 423 LFSGTLRDNLRLA-------------------------NPDASDEELWA---------------ALQQVGLEKLLESAPD 462 (573)
T ss_pred HHHHHHHHHHhhc-------------------------CCCCCHHHHHH---------------HHHHcCHHHHHHhChh
Confidence 6667777777664 34444443332 333333 345
Q ss_pred cccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHH-c-CCeEEEEEecChhHHHhhc
Q 044321 298 CADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHI-L-EGTILISLLQPAPETYDLF 375 (521)
Q Consensus 298 ~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~-~-~~t~ii~i~h~~~~~~~l~ 375 (521)
.++|.+|+ .++.||||||||++|||+|++++++++|||||.++|.+..+.+.+++.+ . ++|++++ ||+... .+.|
T Consensus 463 gl~t~lge-~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~v-THrL~~-le~~ 539 (573)
T COG4987 463 GLNTWLGE-GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMV-THRLRG-LERM 539 (573)
T ss_pred hhhchhcc-CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEE-eccccc-Hhhc
Confidence 77889986 6788999999999999999999999999999999887766665555433 2 4555555 555433 4689
Q ss_pred CeEEEEeCCEEEEecCHhHHHH
Q 044321 376 DDIILISNGHIVYQGPREYVLE 397 (521)
Q Consensus 376 D~VivL~~G~iv~~G~~~~v~~ 397 (521)
|+|++|++|+++++|.+++++.
T Consensus 540 drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 540 DRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred CEEEEEECCeeeecCCHHhhhc
Confidence 9999999999999999999864
No 216
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=5.2e-33 Score=307.24 Aligned_cols=238 Identities=22% Similarity=0.278 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
.++.+...+|+.++++.+++.. . .....+...-.++|+||++.++.
T Consensus 297 ~~~~~~~~~ri~~~l~~~~~~~-----~--~~~~~~~~~~~i~~~~v~f~y~~--------------------------- 342 (571)
T TIGR02203 297 MQRGLAAAESLFTLLDSPPEKD-----T--GTRAIERARGDVEFRNVTFRYPG--------------------------- 342 (571)
T ss_pred HHHHHHHHHHHHHHHcCCCCCC-----C--CCCCCCCCCCeEEEEEEEEEcCC---------------------------
Confidence 6677788888888887654410 0 00001111235999999998631
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccc
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVH 224 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~ 224 (521)
....+|+|+|++|++|+.++|+|+||||||||+++|+|+++|..+ ..+|++|++.
T Consensus 343 -----~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~- 416 (571)
T TIGR02203 343 -----RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVV- 416 (571)
T ss_pred -----CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcc-
Confidence 123599999999999999999999999999999999999988632 1279999875
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++..|++|||.++... +.+.+.+.++....+ .++.+. .|++..||.+|
T Consensus 417 lf~~Ti~~Ni~~~~~~------------------------~~~~~~i~~~l~~~~------l~~~i~--~lp~gldt~i~ 464 (571)
T TIGR02203 417 LFNDTIANNIAYGRTE------------------------QADRAEIERALAAAY------AQDFVD--KLPLGLDTPIG 464 (571)
T ss_pred cccccHHHHHhcCCCC------------------------CCCHHHHHHHHHHcC------hHHHHH--hCcCcccceec
Confidence 5567999999875210 111111111111100 111222 36677899998
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
+. .+.||||||||++||||++.+|++|+|||||+++|....+.+.+.+... ++|+|++ +|+. .....||+|++|+
T Consensus 465 ~~-g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIii-tH~~-~~~~~~D~ii~l~ 541 (571)
T TIGR02203 465 EN-GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVI-AHRL-STIEKADRIVVMD 541 (571)
T ss_pred CC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEE-ehhh-HHHHhCCEEEEEe
Confidence 74 5679999999999999999999999999999998888777777666554 3455555 4544 5678899999999
Q ss_pred CCEEEEecCHhHHH
Q 044321 383 NGHIVYQGPREYVL 396 (521)
Q Consensus 383 ~G~iv~~G~~~~v~ 396 (521)
+|+++..|+++++.
T Consensus 542 ~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 542 DGRIVERGTHNELL 555 (571)
T ss_pred CCEEEeeCCHHHHH
Confidence 99999999999885
No 217
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.4e-34 Score=273.78 Aligned_cols=197 Identities=21% Similarity=0.259 Sum_probs=172.8
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------ceeeecCCccccCCC
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------~~~~v~q~d~~~~~l 228 (521)
+.++.+.+++++||||.++||+|++++|||||||||.+++|.|++.|+.+ ..+|+|.+.-+++.+
T Consensus 8 vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~ 87 (300)
T COG4152 8 VTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKM 87 (300)
T ss_pred chhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccC
Confidence 35566788999999999999999999999999999999999999998632 238999999999999
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
||.|.+.|.+++.|+.. +++....+.+|+.+++......+|-
T Consensus 88 tv~dql~yla~LkGm~~----------------------------------~e~~~~~~~wLer~~i~~~~~~kIk---- 129 (300)
T COG4152 88 TVEDQLKYLAELKGMPK----------------------------------AEIQKKLQAWLERLEIVGKKTKKIK---- 129 (300)
T ss_pred cHHHHHHHHHHhcCCcH----------------------------------HHHHHHHHHHHHhccccccccchHH----
Confidence 99999999998887632 1233456789999999887776654
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.||.|++|++.+..+++++|+++|||||+|++|+-.++.|++.+.++ .+++||.++|.++.+.++||++++|++|+.
T Consensus 130 -~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~ 208 (300)
T COG4152 130 -ELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQT 208 (300)
T ss_pred -HhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCce
Confidence 59999999999999999999999999999999999999999887655 467777788999999999999999999999
Q ss_pred EEecCHhHHHHHH
Q 044321 387 VYQGPREYVLEFF 399 (521)
Q Consensus 387 v~~G~~~~v~~~f 399 (521)
|.+|+.+++...|
T Consensus 209 V~~G~v~~ir~~~ 221 (300)
T COG4152 209 VLYGTVEDIRRSF 221 (300)
T ss_pred EEeccHHHHHHhc
Confidence 9999999998755
No 218
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-33 Score=307.53 Aligned_cols=189 Identities=25% Similarity=0.286 Sum_probs=150.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC--CCC--------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS--SLK--------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~--~~~--------------------~~~~v~q~d~~~~~l 228 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++| +.+ ..+|++|+..+++.+
T Consensus 18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 97 (506)
T PRK13549 18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKEL 97 (506)
T ss_pred eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCC
Confidence 4699999999999999999999999999999999999876 211 137888988788899
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
||+||+.|.......+. . +. .+....++++++.+||.+..++.++
T Consensus 98 tv~e~l~~~~~~~~~~~-------~-------------~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~---- 142 (506)
T PRK13549 98 SVLENIFLGNEITPGGI-------M-------------DY-----------DAMYLRAQKLLAQLKLDINPATPVG---- 142 (506)
T ss_pred cHHHHhhhcccccccCC-------c-------------CH-----------HHHHHHHHHHHHHcCCCCCcccchh----
Confidence 99999988643210000 0 00 0011245678999999877777665
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++||+++|+...+..+||+|++|++|++
T Consensus 143 -~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i 221 (506)
T PRK13549 143 -NLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRH 221 (506)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEE
Confidence 59999999999999999999999999999998887777666665443 345677778888899999999999999999
Q ss_pred EEecCHhHH
Q 044321 387 VYQGPREYV 395 (521)
Q Consensus 387 v~~G~~~~v 395 (521)
++.|+++++
T Consensus 222 ~~~~~~~~~ 230 (506)
T PRK13549 222 IGTRPAAGM 230 (506)
T ss_pred eeecccccC
Confidence 999987765
No 219
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-33 Score=279.48 Aligned_cols=186 Identities=16% Similarity=0.237 Sum_probs=140.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC-----CCCC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD-----SSLK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~-----~~~~---------------------~~~~v~q~d~~ 224 (521)
..+|+|+||+|++|++++|+|+|||||||||++|+|+++ |+.+ ..+|++|+..+
T Consensus 37 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 116 (271)
T PRK14238 37 DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNP 116 (271)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCcc
Confidence 358999999999999999999999999999999999875 2211 13688888766
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCC----Ccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGL----DVCAD 300 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL----~~~~d 300 (521)
++ .||.||+.++.......... .....+..+++.+++ .+..+
T Consensus 117 ~~-~tv~eni~~~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~~~~~l~~~~~ 162 (271)
T PRK14238 117 FP-KSIYDNVTYGPKIHGIKDKK---------------------------------TLDEIVEKSLRGAAIWDELKDRLH 162 (271)
T ss_pred cc-ccHHHHHHHHHHhcCCCcHH---------------------------------HHHHHHHHHHHHcCCcchHHHHHh
Confidence 65 59999998764322110000 001122344555543 22233
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEE
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
. .+..|||||||||+||++|+.+|++|||||||+++|......+.+++.+. .+.+||+++|+...+.++||+++
T Consensus 163 ~-----~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~ 237 (271)
T PRK14238 163 D-----NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTA 237 (271)
T ss_pred c-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEE
Confidence 3 44569999999999999999999999999999999888777777766543 23566777888888899999999
Q ss_pred EEeCCEEEEecCHhHH
Q 044321 380 LISNGHIVYQGPREYV 395 (521)
Q Consensus 380 vL~~G~iv~~G~~~~v 395 (521)
+|++|++++.|+++++
T Consensus 238 ~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 238 FFLNGYVNEYDDTDKI 253 (271)
T ss_pred EEECCEEEEeCCHHHH
Confidence 9999999999998877
No 220
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=2.9e-33 Score=272.50 Aligned_cols=187 Identities=16% Similarity=0.139 Sum_probs=143.1
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCcee-------eecCCccccCCCCHHHHHHHHHHhccCc
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRC-------DISQHDVHIGEMTVRETLAFSARCQGVG 244 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~-------~v~q~d~~~~~lTV~E~l~f~~~~~~~~ 244 (521)
++|+||||+|++|++++|+||||||||||+++|+|+++|+.+... .+.+...+++.+|+.||+.+.....+..
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~ 80 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLD 80 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCC
Confidence 479999999999999999999999999999999999877633211 1223345677899999998865432211
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHH
Q 044321 245 SRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEM 324 (521)
Q Consensus 245 ~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAra 324 (521)
.. .....+++.++|+...++.++ .||||||||++||+|
T Consensus 81 ~~-------------------------------------~~~~~~~~~~~l~~~~~~~~~-----~lS~G~~qrv~la~a 118 (213)
T PRK15177 81 GD-------------------------------------EFSHFCYQLTQLEQCYTDRVS-----EYSVTMKTHLAFAIN 118 (213)
T ss_pred HH-------------------------------------HHHHHHHHHhChhHHhhchHh-----hcCHHHHHHHHHHHH
Confidence 00 011223445677777777665 499999999999999
Q ss_pred HcCCCcEEEEeCCChhhHHHHHHHHHHHHH-HcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHHHHHH
Q 044321 325 LVGPAQALFMDEISNSTTFQIVNSLRQFIH-ILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFK 400 (521)
Q Consensus 325 Lv~~P~iLlLDEPTs~~~~~i~~~L~~l~~-~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~~~f~ 400 (521)
|+.+|+++||||||+++|....+.+.+++. .....++++++|+...+..+||++++|++|++++.|+.+++..+++
T Consensus 119 l~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 195 (213)
T PRK15177 119 LLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATALFE 195 (213)
T ss_pred HhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHHHH
Confidence 999999999999999888777666666442 2223346667888888889999999999999999999998876654
No 221
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=3.8e-33 Score=291.23 Aligned_cols=239 Identities=24% Similarity=0.309 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
...++.+.+|+-+.+.+.++. -....++-|+..+..|++++-.
T Consensus 302 ~~~Ar~s~~Rl~~lL~~~p~~--------~~~m~LP~P~g~L~Ve~l~~~P----------------------------- 344 (580)
T COG4618 302 FVAARQSYKRLNELLAELPAA--------AERMPLPAPQGALSVERLTAAP----------------------------- 344 (580)
T ss_pred HHHHHHHHHHHHHHHHhCccc--------cCCCCCCCCCceeeEeeeeecC-----------------------------
Confidence 456677888888888877763 1234555567789999988731
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccc
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVH 224 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~ 224 (521)
...++++|+||||.+.+|+.++|+||||||||||.|+|.|...|..+ ..+|++|+-.
T Consensus 345 ---Pg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVe- 420 (580)
T COG4618 345 ---PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVE- 420 (580)
T ss_pred ---CCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccce-
Confidence 12346899999999999999999999999999999999998887532 2389999654
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++..||.|||.=. .++.+.+.+.+++...+ ..|-+ +.|++.+||.+|
T Consensus 421 LF~GTIaeNIaRf-------------------------~~~~d~~kIieAA~lAg-----vHelI---l~lP~GYdT~iG 467 (580)
T COG4618 421 LFDGTIAENIARF-------------------------GEEADPEKVIEAARLAG-----VHELI---LRLPQGYDTRIG 467 (580)
T ss_pred ecCCcHHHHHHhc-------------------------cccCCHHHHHHHHHHcC-----hHHHH---HhCcCCccCccC
Confidence 5568999998521 22334445555554443 33443 469999999999
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHH---HcCCeEEEEEecChhHHHhhcCeEEEE
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIH---ILEGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~---~~~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
+ ...+||||||||+++||||.++|.+++||||-+++|.+--..|...+. ..++|+|+++|. +.+...+|+|++|
T Consensus 468 ~-~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHR--Ps~L~~~Dkilvl 544 (580)
T COG4618 468 E-GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHR--PSALASVDKILVL 544 (580)
T ss_pred C-CCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecC--HHHHhhcceeeee
Confidence 7 567899999999999999999999999999999988776665554432 235666665543 5788999999999
Q ss_pred eCCEEEEecCHhHHHHHH
Q 044321 382 SNGHIVYQGPREYVLEFF 399 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~~~f 399 (521)
++|++-.+|+.++++..+
T Consensus 545 ~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 545 QDGRIAAFGPREEVLAKV 562 (580)
T ss_pred cCChHHhcCCHHHHHHHh
Confidence 999999999999998654
No 222
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-33 Score=310.15 Aligned_cols=188 Identities=22% Similarity=0.227 Sum_probs=149.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCc--cccC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHD--VHIG 226 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d--~~~~ 226 (521)
..+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+||+|+. .+++
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~ 416 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDP 416 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCC
Confidence 4699999999999999999999999999999999999876421 137888875 4778
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccC
Q 044321 227 EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGD 305 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~ 305 (521)
.+||.+++.+.....+.... .+....+.++|+.+||. ...+++++
T Consensus 417 ~~tv~~~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~L~~~gL~~~~~~~~~~- 462 (623)
T PRK10261 417 RQTVGDSIMEPLRVHGLLPG---------------------------------KAAAARVAWLLERVGLLPEHAWRYPH- 462 (623)
T ss_pred CCCHHHHHHHHHHHcCCCCH---------------------------------HHHHHHHHHHHHHcCCCHHHhhCCcc-
Confidence 89999999876432211000 00122456789999996 45666654
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.+++.++ .+.+||+++|+...+..+||+|++|+
T Consensus 463 ----~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~ 538 (623)
T PRK10261 463 ----EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMY 538 (623)
T ss_pred ----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 59999999999999999999999999999988877666666655332 25667777899999999999999999
Q ss_pred CCEEEEecCHhHHH
Q 044321 383 NGHIVYQGPREYVL 396 (521)
Q Consensus 383 ~G~iv~~G~~~~v~ 396 (521)
+|++++.|++++++
T Consensus 539 ~G~iv~~g~~~~i~ 552 (623)
T PRK10261 539 LGQIVEIGPRRAVF 552 (623)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999999884
No 223
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=6.4e-33 Score=313.46 Aligned_cols=238 Identities=22% Similarity=0.328 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCC--ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLP--TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSL 161 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~ 161 (521)
.++.+..++|+.++++.+++.. .......+ ...|+|+|+++.+..
T Consensus 421 ~~~~~~~~~ri~~~l~~~~e~~--------~~~~~~~~~~~~~i~~~~vsf~y~~------------------------- 467 (694)
T TIGR01846 421 FQQTGIALERLGDILNSPTEPR--------SAGLAALPELRGAITFENIRFRYAP------------------------- 467 (694)
T ss_pred HHHHHHHHHHHHHHHcCCCCcc--------CCCCCCCCCCCCeEEEEEEEEEcCC-------------------------
Confidence 5678888999999988766521 00011122 246999999998621
Q ss_pred ccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCc
Q 044321 162 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHD 222 (521)
Q Consensus 162 ~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d 222 (521)
..+.+|+|+||+|++|+.++|+|+||||||||+++|+|+++|+.+ ..+||+|++
T Consensus 468 -------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~ 540 (694)
T TIGR01846 468 -------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQEN 540 (694)
T ss_pred -------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCC
Confidence 123589999999999999999999999999999999999988632 127899976
Q ss_pred cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccc
Q 044321 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTM 302 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 302 (521)
.+| ..|++||+.++.. +.+.+...++....+ .++.++ .|+...||.
T Consensus 541 ~lf-~~ti~eNi~~~~~-------------------------~~~~~~i~~a~~~~~------l~~~i~--~lp~gl~t~ 586 (694)
T TIGR01846 541 VLF-SRSIRDNIALCNP-------------------------GAPFEHVIHAAKLAG------AHDFIS--ELPQGYNTE 586 (694)
T ss_pred eeh-hhhHHHHHhcCCC-------------------------CCCHHHHHHHHHHcC------hHHHHH--hCcCccCcE
Confidence 554 5799999987421 111111222211111 122222 366778999
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
+|+. ..+||||||||++|||||+.+|++|||||||+++|....+.+.+.+... .+.++|+++|.... ...||+|++|
T Consensus 587 i~~~-g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~-~~~~d~ii~l 664 (694)
T TIGR01846 587 VGEK-GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLST-VRACDRIIVL 664 (694)
T ss_pred ecCC-CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHH-HHhCCEEEEE
Confidence 9874 6789999999999999999999999999999998887777776666543 33444445555544 4669999999
Q ss_pred eCCEEEEecCHhHHHH
Q 044321 382 SNGHIVYQGPREYVLE 397 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~~ 397 (521)
++|++++.|+++++.+
T Consensus 665 ~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 665 EKGQIAESGRHEELLA 680 (694)
T ss_pred eCCEEEEeCCHHHHHH
Confidence 9999999999998853
No 224
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-32 Score=276.19 Aligned_cols=190 Identities=21% Similarity=0.217 Sum_probs=147.9
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCc------eeeecCCccccCCCCHHHHHHHHHHhcc
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN------RCDISQHDVHIGEMTVRETLAFSARCQG 242 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~------~~~v~q~d~~~~~lTV~E~l~f~~~~~~ 242 (521)
..+.+|+||||+|++|++++|+||||||||||+++|+|+++|..+. ..++.+.....+.+|+.+|+.+.....+
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~ 114 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMG 114 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcC
Confidence 4567999999999999999999999999999999999998876421 1355565556678999999987543221
Q ss_pred CchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHH
Q 044321 243 VGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTG 322 (521)
Q Consensus 243 ~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIA 322 (521)
... .+....++.+++.++|.+..++.++ .|||||+|||+||
T Consensus 115 ~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~La 155 (264)
T PRK13546 115 FKR----------------------------------KEIKAMTPKIIEFSELGEFIYQPVK-----KYSSGMRAKLGFS 155 (264)
T ss_pred CCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCcc-----cCCHHHHHHHHHH
Confidence 100 0011134557778888877766554 5999999999999
Q ss_pred HHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHHH
Q 044321 323 EMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLE 397 (521)
Q Consensus 323 raLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~~ 397 (521)
+||+.+|++|||||||+++|....+.+.+++... .+.++|+++|+..++.++||+|++|++|++++.|+.+++.+
T Consensus 156 ral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (264)
T PRK13546 156 INITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLP 232 (264)
T ss_pred HHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999887666665555432 35566667788888899999999999999999999988754
No 225
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=7.4e-33 Score=307.38 Aligned_cols=189 Identities=22% Similarity=0.303 Sum_probs=143.1
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~E 232 (521)
.+|+|+|++++||+.++|+|+||||||||+++|+|+++|..+ ..+|++|++.+| ..|++|
T Consensus 349 ~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~~ 427 (588)
T PRK13657 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLF-NRSIED 427 (588)
T ss_pred ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccc-cccHHH
Confidence 589999999999999999999999999999999999988642 128899987555 679999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.++.. +.+.+....+.... -.+..+. .++...||.+|+ ....||
T Consensus 428 Ni~~~~~-------------------------~~~d~~i~~al~~~------~l~~~i~--~lp~gldt~i~~-~g~~LS 473 (588)
T PRK13657 428 NIRVGRP-------------------------DATDEEMRAAAERA------QAHDFIE--RKPDGYDTVVGE-RGRQLS 473 (588)
T ss_pred HHhcCCC-------------------------CCCHHHHHHHHHHh------CHHHHHH--hCcccccchhcC-CCCCCC
Confidence 9987521 11111111111100 0111222 266778899986 456799
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||||++|||||+.+|++|+|||||+++|.+..+.+.+.+... ++|+|+++ |+. ...+.||+|++|++|+++..|
T Consensus 474 gGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiit-Hr~-~~~~~~D~ii~l~~G~i~~~g 551 (588)
T PRK13657 474 GGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIA-HRL-STVRNADRILVFDNGRVVESG 551 (588)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEE-ecH-HHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999998888777776665543 34555554 544 456789999999999999999
Q ss_pred CHhHHHH
Q 044321 391 PREYVLE 397 (521)
Q Consensus 391 ~~~~v~~ 397 (521)
+++++.+
T Consensus 552 ~~~~l~~ 558 (588)
T PRK13657 552 SFDELVA 558 (588)
T ss_pred CHHHHHH
Confidence 9998853
No 226
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=7.9e-33 Score=272.91 Aligned_cols=188 Identities=24% Similarity=0.357 Sum_probs=138.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~ 231 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+..++ ..||.
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~ 93 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLF-NRSIR 93 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhc-cchHH
Confidence 4699999999999999999999999999999999999876521 137888887555 57999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHc--CCCccccccccCccCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKIL--GLDVCADTMVGDEILR 309 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~~~r 309 (521)
||+.+... ... .. .+.. ... ......+++.+ ++....+. .+.
T Consensus 94 ~nl~~~~~--~~~-~~----~~~~------------------~~~------~~~~~~~l~~l~~~~~~~~~~-----~~~ 137 (237)
T cd03252 94 DNIALADP--GMS-ME----RVIE------------------AAK------LAGAHDFISELPEGYDTIVGE-----QGA 137 (237)
T ss_pred HHhhccCC--CCC-HH----HHHH------------------HHH------HcCcHHHHHhCcccccchhhc-----CCC
Confidence 99977421 100 00 0000 000 00112344444 44443443 345
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
.|||||||||+|||||+.+|++|||||||+++|....+.+.+++.+. .+.+|++++|+.+++ ..||++++|++|++++
T Consensus 138 ~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~-~~~d~v~~l~~G~i~~ 216 (237)
T cd03252 138 GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTV-KNADRIIVMEKGRIVE 216 (237)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEECCEEEE
Confidence 69999999999999999999999999999999888777777766543 345566667777777 4699999999999999
Q ss_pred ecCHhHHH
Q 044321 389 QGPREYVL 396 (521)
Q Consensus 389 ~G~~~~v~ 396 (521)
.|+++++.
T Consensus 217 ~~~~~~~~ 224 (237)
T cd03252 217 QGSHDELL 224 (237)
T ss_pred EcCHHHHH
Confidence 99988774
No 227
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.1e-32 Score=274.65 Aligned_cols=187 Identities=22% Similarity=0.273 Sum_probs=137.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCce-----------------------------eeecCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNR-----------------------------CDISQH 221 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~-----------------------------~~v~q~ 221 (521)
..+|+||||+|++|++++|+|||||||||||++|+|+++|.. +. +|++|+
T Consensus 16 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~ 94 (253)
T TIGR02323 16 GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDH-GTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQN 94 (253)
T ss_pred ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCC-cEEEEecccccccccccCCHHHHHHhhhcceEEEEeC
Confidence 358999999999999999999999999999999999987642 22 334443
Q ss_pred cc--ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-c
Q 044321 222 DV--HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-C 298 (521)
Q Consensus 222 d~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~ 298 (521)
+. ..+.+|+.+|+.+....... . . ..+....+..+++.+|+.+ .
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~~~~~-------------------~---~-----------~~~~~~~~~~~l~~l~l~~~~ 141 (253)
T TIGR02323 95 PRDGLRMRVSAGANIGERLMAIGA-------------------R---H-----------YGNIRAAAHDWLEEVEIDPTR 141 (253)
T ss_pred cccccCccccHHHHHHHHHHHhcc-------------------c---c-----------hHHHHHHHHHHHHHcCCChhh
Confidence 21 12234455554332110000 0 0 0011234567899999963 5
Q ss_pred ccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhc
Q 044321 299 ADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLF 375 (521)
Q Consensus 299 ~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~ 375 (521)
.++.+ ..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+.++|+++|+.+.+..+|
T Consensus 142 ~~~~~-----~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~ 216 (253)
T TIGR02323 142 IDDLP-----RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLA 216 (253)
T ss_pred hhcCc-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc
Confidence 56554 459999999999999999999999999999999887777666655432 2556666778888899999
Q ss_pred CeEEEEeCCEEEEecCHhHHH
Q 044321 376 DDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 376 D~VivL~~G~iv~~G~~~~v~ 396 (521)
|++++|++|++++.|+++++.
T Consensus 217 d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 217 QRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred CEEEEEECCEEEEECCHHHHh
Confidence 999999999999999988773
No 228
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-33 Score=311.34 Aligned_cols=187 Identities=22% Similarity=0.270 Sum_probs=148.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------------------------ceee
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------------------------NRCD 217 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------------------------~~~~ 217 (521)
.++|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~ 108 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAM 108 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEE
Confidence 4699999999999999999999999999999999999876411 1267
Q ss_pred ecCCc--cccCCCCHHHHHHHHHHhc-cCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcC
Q 044321 218 ISQHD--VHIGEMTVRETLAFSARCQ-GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILG 294 (521)
Q Consensus 218 v~q~d--~~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg 294 (521)
|+|++ .+++.+||.||+.++.+.. +... .+....+.++|+.+|
T Consensus 109 v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~g 154 (623)
T PRK10261 109 IFQEPMTSLNPVFTVGEQIAESIRLHQGASR----------------------------------EEAMVEAKRMLDQVR 154 (623)
T ss_pred EEeCchhhcCCCCCHHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHCC
Confidence 88875 4677899999998875431 1100 011234567899999
Q ss_pred CCc---cccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecCh
Q 044321 295 LDV---CADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPA 368 (521)
Q Consensus 295 L~~---~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~ 368 (521)
|.+ ..+.++ ..|||||||||+||+||+.+|++|||||||+++|......+.++++++ .+++||+++|+.
T Consensus 155 L~~~~~~~~~~~-----~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl 229 (623)
T PRK10261 155 IPEAQTILSRYP-----HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDM 229 (623)
T ss_pred CCChhhHHhCCC-----ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 964 345444 469999999999999999999999999999998887666665555433 256677788999
Q ss_pred hHHHhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 369 PETYDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 369 ~~~~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
..+.++||+|++|++|++++.|++++++
T Consensus 230 ~~~~~~adri~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 230 GVVAEIADRVLVMYQGEAVETGSVEQIF 257 (623)
T ss_pred HHHHHhCCEEEEeeCCeecccCCHHHhh
Confidence 9999999999999999999999988774
No 229
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-33 Score=277.43 Aligned_cols=189 Identities=18% Similarity=0.216 Sum_probs=139.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CCC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SLK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~~---------------------~~~~v~q~d~~ 224 (521)
..+|+||||+|++|++++|+||||||||||+++|+|++.+ ..+ ..+|++|+..+
T Consensus 23 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 102 (264)
T PRK14243 23 FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNP 102 (264)
T ss_pred EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCcc
Confidence 3699999999999999999999999999999999998642 110 12677887666
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++ .|+.||+.+.....+... . ....++.+++.+++.+......
T Consensus 103 ~~-~tv~enl~~~~~~~~~~~------~-----------------------------~~~~~~~~l~~~~l~~~l~~~~- 145 (264)
T PRK14243 103 FP-KSIYDNIAYGARINGYKG------D-----------------------------MDELVERSLRQAALWDEVKDKL- 145 (264)
T ss_pred cc-ccHHHHHHhhhhhcCcch------H-----------------------------HHHHHHHHHHHhCchhhHHHHh-
Confidence 66 599999887643211100 0 0012233455555532111111
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEe-
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILIS- 382 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~- 382 (521)
+..+..|||||||||+|||||+.+|++|||||||+++|....+.+.+++... ...+||+++|+.+++.++||+|++|+
T Consensus 146 ~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~ 225 (264)
T PRK14243 146 KQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNV 225 (264)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEec
Confidence 2234569999999999999999999999999999999888777777766543 23566667788889999999999998
Q ss_pred --------CCEEEEecCHhHHH
Q 044321 383 --------NGHIVYQGPREYVL 396 (521)
Q Consensus 383 --------~G~iv~~G~~~~v~ 396 (521)
+|++++.|+++++.
T Consensus 226 ~~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 226 ELTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred ccccccccCceEEEeCCHHHHH
Confidence 89999999998884
No 230
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-33 Score=271.51 Aligned_cols=178 Identities=24% Similarity=0.322 Sum_probs=141.2
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCcccc
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDVHI 225 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~~~ 225 (521)
+++.+ ||||+|++ ++++|+||||||||||+++|+|+++|+.+ ..+|++|+..++
T Consensus 11 ~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 87 (214)
T cd03297 11 PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALF 87 (214)
T ss_pred CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccC
Confidence 34445 99999999 99999999999999999999999876421 136888888778
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccC
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGD 305 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 305 (521)
+.+|+.+|+.+..... .. . .....+..+++.+||.+..++.++
T Consensus 88 ~~~t~~~~l~~~~~~~--~~------~----------------------------~~~~~~~~~l~~~~l~~~~~~~~~- 130 (214)
T cd03297 88 PHLNVRENLAFGLKRK--RN------R----------------------------EDRISVDELLDLLGLDHLLNRYPA- 130 (214)
T ss_pred CCCCHHHHHHHHHhhC--CH------H----------------------------HHHHHHHHHHHHcCCHhHhhcCcc-
Confidence 8899999998753210 00 0 011234568889999876666554
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .++++++++|+.+++..+||++++|+
T Consensus 131 ----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 206 (214)
T cd03297 131 ----QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVME 206 (214)
T ss_pred ----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEE
Confidence 59999999999999999999999999999999888777777666543 25667777888888999999999999
Q ss_pred CCEEEEec
Q 044321 383 NGHIVYQG 390 (521)
Q Consensus 383 ~G~iv~~G 390 (521)
+|++++.|
T Consensus 207 ~G~i~~~g 214 (214)
T cd03297 207 DGRLQYIG 214 (214)
T ss_pred CCEEEecC
Confidence 99998875
No 231
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-32 Score=279.36 Aligned_cols=185 Identities=18% Similarity=0.241 Sum_probs=143.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CCC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SLK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|++++ ..+ ..+|++|+..+
T Consensus 52 ~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l 131 (285)
T PRK14254 52 EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNP 131 (285)
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 3699999999999999999999999999999999999752 210 12678888766
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc----ccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV----CAD 300 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~----~~d 300 (521)
++ .||.||+.+.....+... .....+..+++.+||.. ..+
T Consensus 132 ~~-~tv~enl~~~~~~~~~~~-----------------------------------~~~~~~~~~l~~~~l~~~i~~~~~ 175 (285)
T PRK14254 132 FP-KSIYDNVAYGLKIQGYDG-----------------------------------DIDERVEESLRRAALWDEVKDQLD 175 (285)
T ss_pred Cc-CCHHHHHHHHHHHcCCcH-----------------------------------HHHHHHHHHHHHcCCCchhHHHHh
Confidence 66 499999987643321100 00113456778888753 334
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEE
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
.. +..|||||||||+||+||+.+|++|||||||+++|....+.+.+++++. +..+||+++|+...+..+||+++
T Consensus 176 ~~-----~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~ 250 (285)
T PRK14254 176 SS-----GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTA 250 (285)
T ss_pred CC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEE
Confidence 33 4569999999999999999999999999999999988877777776554 23566777888888999999975
Q ss_pred -EEeCCEEEEecCHhHHH
Q 044321 380 -LISNGHIVYQGPREYVL 396 (521)
Q Consensus 380 -vL~~G~iv~~G~~~~v~ 396 (521)
+|++|++++.|+++++.
T Consensus 251 v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 251 VFLTGGELVEFDDTDKIF 268 (285)
T ss_pred EEeeCCEEEEeCCHHHHH
Confidence 67999999999988763
No 232
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.3e-32 Score=274.66 Aligned_cols=184 Identities=20% Similarity=0.208 Sum_probs=139.9
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC----CCC-----------------ceeeecCCcc--ccCCC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS----SLK-----------------NRCDISQHDV--HIGEM 228 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~----~~~-----------------~~~~v~q~d~--~~~~l 228 (521)
.+|+|+||+|++|++++|+||||||||||+++|+|+++| +.+ ..+|++|+.. +.+.+
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~ 96 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLH 96 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccc
Confidence 589999999999999999999999999999999999877 311 1256677653 33446
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc---cccccccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV---CADTMVGD 305 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~---~~dt~vg~ 305 (521)
|+.+++.+.+...+.. .....+..+++.+||.+ ..++.+
T Consensus 97 ~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~l~~~~l~~~~~~~~~~~-- 138 (254)
T PRK10418 97 TMHTHARETCLALGKP------------------------------------ADDATLTAALEAVGLENAARVLKLYP-- 138 (254)
T ss_pred cHHHHHHHHHHHcCCC------------------------------------hHHHHHHHHHHHcCCCChhhhhhcCC--
Confidence 7776665432211100 00123566888999975 234444
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
..|||||||||+||+||+.+|++|||||||+++|....+.+.+++++. .+++|++++|+..++.++||++++|+
T Consensus 139 ---~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~ 215 (254)
T PRK10418 139 ---FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMS 215 (254)
T ss_pred ---cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEE
Confidence 469999999999999999999999999999998887666655554432 25566777788888889999999999
Q ss_pred CCEEEEecCHhHHH
Q 044321 383 NGHIVYQGPREYVL 396 (521)
Q Consensus 383 ~G~iv~~G~~~~v~ 396 (521)
+|++++.|+++++.
T Consensus 216 ~G~i~~~~~~~~~~ 229 (254)
T PRK10418 216 HGRIVEQGDVETLF 229 (254)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999988774
No 233
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-33 Score=279.13 Aligned_cols=192 Identities=18% Similarity=0.204 Sum_probs=148.5
Q ss_pred CCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CCC---------------------ceeeecCC
Q 044321 168 KKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SLK---------------------NRCDISQH 221 (521)
Q Consensus 168 ~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~~---------------------~~~~v~q~ 221 (521)
++++.+|+|+||+|++|++++|+||||||||||+++|+|++.| ..+ ..+|++|+
T Consensus 18 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 97 (261)
T PRK14263 18 YGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQ 97 (261)
T ss_pred eCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecC
Confidence 3456799999999999999999999999999999999999865 110 12778887
Q ss_pred ccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccc
Q 044321 222 DVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADT 301 (521)
Q Consensus 222 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 301 (521)
...+ .+|+.||+.++....+... +....+..+++.+||.+....
T Consensus 98 ~~~~-~~tv~enl~~~~~~~~~~~-----------------------------------~~~~~~~~~l~~~~l~~~i~~ 141 (261)
T PRK14263 98 PNPF-SMSIFDNVAFGLRLNRYKG-----------------------------------DLGDRVKHALQGAALWDEVKD 141 (261)
T ss_pred Cccc-cccHHHHHHHHHhhcCchH-----------------------------------HHHHHHHHHHHHcCCchhhhh
Confidence 6655 6999999988643221100 001134557788887543322
Q ss_pred cccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEE
Q 044321 302 MVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 302 ~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
.. +..++.|||||+||++|||||+.+|++|||||||+++|....+.+.+++.+. .++++++++|+..++.++||+|++
T Consensus 142 ~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~ 220 (261)
T PRK14263 142 KL-KVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAF 220 (261)
T ss_pred hh-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEE
Confidence 22 1345679999999999999999999999999999999988877777776654 345677778888889999999999
Q ss_pred Ee--------CCEEEEecCHhHHH
Q 044321 381 IS--------NGHIVYQGPREYVL 396 (521)
Q Consensus 381 L~--------~G~iv~~G~~~~v~ 396 (521)
|+ +|++++.|+++++.
T Consensus 221 l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 221 FSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred EecccccccCCceEEEeCCHHHHH
Confidence 96 89999999988874
No 234
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-33 Score=305.16 Aligned_cols=193 Identities=26% Similarity=0.291 Sum_probs=150.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~lTV 230 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+...++.+||
T Consensus 18 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv 97 (510)
T PRK09700 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTV 97 (510)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcH
Confidence 4699999999999999999999999999999999999876421 13788898888888999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
.||+.++....... .. . ...+ ..+....+.++++.+||.+..++.++ .
T Consensus 98 ~e~l~~~~~~~~~~--~~-------------~-~~~~-----------~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 145 (510)
T PRK09700 98 LENLYIGRHLTKKV--CG-------------V-NIID-----------WREMRVRAAMMLLRVGLKVDLDEKVA-----N 145 (510)
T ss_pred HHHhhhcccccccc--cc-------------c-cccC-----------HHHHHHHHHHHHHHcCCCCCcccchh-----h
Confidence 99998753210000 00 0 0000 00112245678999999887777665 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++||+++|+...+..+||+|++|++|++++
T Consensus 146 LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~ 225 (510)
T PRK09700 146 LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVC 225 (510)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEee
Confidence 9999999999999999999999999999998887777666665443 35567777899889999999999999999999
Q ss_pred ecCHhHH
Q 044321 389 QGPREYV 395 (521)
Q Consensus 389 ~G~~~~v 395 (521)
.|+++++
T Consensus 226 ~g~~~~~ 232 (510)
T PRK09700 226 SGMVSDV 232 (510)
T ss_pred ecchhhC
Confidence 9998765
No 235
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=6.6e-33 Score=303.54 Aligned_cols=190 Identities=21% Similarity=0.252 Sum_probs=147.4
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC--CCCCC-----------------------------------
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL--DSSLK----------------------------------- 213 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l--~~~~~----------------------------------- 213 (521)
+.+|+||||+|.+|++++|+|||||||||||++|+|++ .|+.+
T Consensus 13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~ 92 (520)
T TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPE 92 (520)
T ss_pred eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccccccccccccccc
Confidence 46999999999999999999999999999999999986 34311
Q ss_pred -----------------ceeeecCC-ccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHH
Q 044321 214 -----------------NRCDISQH-DVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAA 275 (521)
Q Consensus 214 -----------------~~~~v~q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~ 275 (521)
..+|++|+ ..+++.+||.||+.|.....+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~------------------------------- 141 (520)
T TIGR03269 93 EVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYE------------------------------- 141 (520)
T ss_pred chhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCC-------------------------------
Confidence 01456664 44566677777777653221110
Q ss_pred hhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHH
Q 044321 276 ATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHI 355 (521)
Q Consensus 276 ~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~ 355 (521)
..+....+.++++.+||.+..+..++ .|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+
T Consensus 142 ---~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 213 (520)
T TIGR03269 142 ---GKEAVGRAVDLIEMVQLSHRITHIAR-----DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEE 213 (520)
T ss_pred ---HHHHHHHHHHHHHHcCChhhhhcCcc-----cCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHH
Confidence 01122346778999999877776654 5999999999999999999999999999999988877776555443
Q ss_pred c---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHHHHH
Q 044321 356 L---EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFF 399 (521)
Q Consensus 356 ~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~~~f 399 (521)
. .+++||+++|+...+.++||+|++|++|++++.|+++++...+
T Consensus 214 l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 214 AVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred HHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 2 2556777788888889999999999999999999998876543
No 236
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.2e-32 Score=304.56 Aligned_cols=236 Identities=20% Similarity=0.241 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCC--ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLP--TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSL 161 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~ 161 (521)
.+..+.+.+|+.++++.+++. ...+...+ ...|+|+|+++.+..
T Consensus 280 ~~~~~~a~~ri~~ll~~~~~~---------~~~~~~~~~~~~~I~~~~v~~~y~~------------------------- 325 (569)
T PRK10789 280 VERGSAAYSRIRAMLAEAPVV---------KDGSEPVPEGRGELDVNIRQFTYPQ------------------------- 325 (569)
T ss_pred HHHHHHHHHHHHHHHcCCCcc---------cCCCCCCCCCCCcEEEEEEEEECCC-------------------------
Confidence 456677888888888765431 00011111 235889999988621
Q ss_pred ccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCc
Q 044321 162 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHD 222 (521)
Q Consensus 162 ~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d 222 (521)
++..+|+|+|++|++|+.++|+||||||||||+++|+|+++|+.+ ..+|++|++
T Consensus 326 -------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 398 (569)
T PRK10789 326 -------TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTP 398 (569)
T ss_pred -------CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCC
Confidence 123589999999999999999999999999999999999988632 127889987
Q ss_pred cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccc
Q 044321 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTM 302 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 302 (521)
.+| ..|++||+.++... .+.+....+....+ ..+. ...+++..||.
T Consensus 399 ~lf-~~ti~~Ni~~~~~~-------------------------~~~~~~~~~~~~~~-----l~~~---i~~lp~gl~t~ 444 (569)
T PRK10789 399 FLF-SDTVANNIALGRPD-------------------------ATQQEIEHVARLAS-----VHDD---ILRLPQGYDTE 444 (569)
T ss_pred eec-cccHHHHHhcCCCC-------------------------CCHHHHHHHHHHcC-----CHHH---HHhCcCcccce
Confidence 665 46999999875210 01111111110000 0111 22467788999
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEE
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
+|+ ....||||||||++|||||+.+|++|||||||+++|.+..+.+.+.+... +.|+|+++ |+. +....||+|++
T Consensus 445 ~~~-~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~it-H~~-~~~~~~d~i~~ 521 (569)
T PRK10789 445 VGE-RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISA-HRL-SALTEASEILV 521 (569)
T ss_pred ecC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEe-cch-hHHHcCCEEEE
Confidence 987 46679999999999999999999999999999998888777776666543 45555554 544 34567999999
Q ss_pred EeCCEEEEecCHhHHHH
Q 044321 381 ISNGHIVYQGPREYVLE 397 (521)
Q Consensus 381 L~~G~iv~~G~~~~v~~ 397 (521)
|++|++++.|+++++.+
T Consensus 522 l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 522 MQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred EeCCEEEEecCHHHHHH
Confidence 99999999999998753
No 237
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.3e-32 Score=305.20 Aligned_cols=240 Identities=19% Similarity=0.274 Sum_probs=166.1
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
.+..+..++|+.++.+.+++. .+..+....+.+...++|+|+++.+.
T Consensus 299 ~~~~~~~~~ri~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~v~~~y~---------------------------- 345 (585)
T TIGR01192 299 IFEARAKLEDFFDLEDSVFQR-----EEPADAPELPNVKGAVEFRHITFEFA---------------------------- 345 (585)
T ss_pred HHHHHHHHHHHHHHHcCCccc-----cCCccCCCCCCCCCeEEEEEEEEECC----------------------------
Confidence 355667777777777654331 00000000111123588999998752
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccc
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVH 224 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~ 224 (521)
+...+|+|+||+|++|+.++|+||||||||||+++|+|+++|..+ ..+|++|+..+
T Consensus 346 -----~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 420 (585)
T TIGR01192 346 -----NSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGL 420 (585)
T ss_pred -----CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCcc
Confidence 112489999999999999999999999999999999999987632 12788998765
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
+ ..|++||+.++... .+.+....+....+ ..+.+ ..++...+|.+|
T Consensus 421 f-~~ti~~Ni~~~~~~-------------------------~~~~~~~~a~~~~~-----~~~~i---~~l~~g~~t~~~ 466 (585)
T TIGR01192 421 F-NRSIRENIRLGREG-------------------------ATDEEVYEAAKAAA-----AHDFI---LKRSNGYDTLVG 466 (585)
T ss_pred C-cccHHHHHhcCCCC-------------------------CCHHHHHHHHHHhC-----cHHHH---Hhccccccchhc
Confidence 5 57999999875210 01111111111000 11112 135566788887
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+ .+..||||||||++|||||+.+|++|||||||+++|.+..+.+.+.+.+. .+.++|+++|+.+.+ ..||+|++|++
T Consensus 467 ~-~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~-~~~d~i~~l~~ 544 (585)
T TIGR01192 467 E-RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTV-RNADLVLFLDQ 544 (585)
T ss_pred C-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHH-HcCCEEEEEEC
Confidence 6 46679999999999999999999999999999999888877777766543 333444455655454 67999999999
Q ss_pred CEEEEecCHhHHHH
Q 044321 384 GHIVYQGPREYVLE 397 (521)
Q Consensus 384 G~iv~~G~~~~v~~ 397 (521)
|++++.|+++++.+
T Consensus 545 G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 545 GRLIEKGSFQELIQ 558 (585)
T ss_pred CEEEEECCHHHHHH
Confidence 99999999988753
No 238
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-32 Score=272.76 Aligned_cols=191 Identities=21% Similarity=0.269 Sum_probs=144.4
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC--C---CC---------------------CceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD--S---SL---------------------KNRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~--~---~~---------------------~~~~~v~q~d~~ 224 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|++. | +. ...+|++|+...
T Consensus 16 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14266 16 AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNP 95 (250)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCcc
Confidence 469999999999999999999999999999999999753 2 11 013788888766
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++ .|+.+|+.+.....+.... ......+.++++.+||........
T Consensus 96 ~~-~t~~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~- 140 (250)
T PRK14266 96 FP-KSIFDNVAYGLRIHGEDDE---------------------------------DFIEERVEESLKAAALWDEVKDKL- 140 (250)
T ss_pred Cc-chHHHHHHhHHhhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhHHHHH-
Confidence 66 4999998875432111000 001123456677777743221111
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+..+..|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++|++++|+..++..+||++++|++
T Consensus 141 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~ 220 (250)
T PRK14266 141 DKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLN 220 (250)
T ss_pred hCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEEC
Confidence 2345579999999999999999999999999999999888777777766543 345667777888899999999999999
Q ss_pred CEEEEecCHhHHH
Q 044321 384 GHIVYQGPREYVL 396 (521)
Q Consensus 384 G~iv~~G~~~~v~ 396 (521)
|++++.|+++++.
T Consensus 221 G~i~~~g~~~~~~ 233 (250)
T PRK14266 221 GEIIESGLTDQIF 233 (250)
T ss_pred CeEEEeCCHHHHH
Confidence 9999999988873
No 239
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-33 Score=296.77 Aligned_cols=188 Identities=16% Similarity=0.180 Sum_probs=146.4
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeee-------cCCccccCCCCHHHHHHHHHHhccC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDI-------SQHDVHIGEMTVRETLAFSARCQGV 243 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v-------~q~d~~~~~lTV~E~l~f~~~~~~~ 243 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|.. +...+ .....+.+.+|++|++.+.....+.
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~s-GeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~ 115 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNK-GTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGL 115 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCc-eEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCC
Confidence 469999999999999999999999999999999999988753 22222 2223455678999999875432111
Q ss_pred chhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHH
Q 044321 244 GSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGE 323 (521)
Q Consensus 244 ~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAr 323 (521)
.. .+....++.+++.+||.+..++.++ .|||||||||+||+
T Consensus 116 ~~----------------------------------~e~~e~i~elLe~lgL~~~ld~~~~-----~LSGGQrQRVaLAr 156 (549)
T PRK13545 116 TK----------------------------------EKIKEIIPEIIEFADIGKFIYQPVK-----TYSSGMKSRLGFAI 156 (549)
T ss_pred CH----------------------------------HHHHHHHHHHHHHcCChhHhhCCcc-----cCCHHHHHHHHHHH
Confidence 00 0011234568888999877776654 59999999999999
Q ss_pred HHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHHHH
Q 044321 324 MLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEF 398 (521)
Q Consensus 324 aLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~~~ 398 (521)
||+.+|++|||||||+++|....+.+.+++.+. .+.+||+++|+...+..+||++++|++|++++.|+++++...
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 999999999999999999887666666655433 345666677888889999999999999999999999887643
No 240
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.5e-32 Score=273.31 Aligned_cols=194 Identities=23% Similarity=0.281 Sum_probs=142.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCC--CCCCCC--------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGK--LDSSLK--------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~--l~~~~~--------------------~~~~v~q~d~~~~~l 228 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+ ++|..+ ..+|++|+...++.+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~ 99 (252)
T CHL00131 20 NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGV 99 (252)
T ss_pred EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccc
Confidence 3599999999999999999999999999999999997 344311 124677777777888
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCcc
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDEI 307 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~ 307 (521)
|+.+++.+......... .. .+.+. .+....+..+++.+||. ...++.++
T Consensus 100 ~~~~~l~~~~~~~~~~~---------------~~-~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~~--- 149 (252)
T CHL00131 100 SNADFLRLAYNSKRKFQ---------------GL-PELDP-----------LEFLEIINEKLKLVGMDPSFLSRNVN--- 149 (252)
T ss_pred cHHHHHHHhhhhhhccc---------------cc-ccccH-----------HHHHHHHHHHHHHcCCchhhhccccc---
Confidence 89888876432110000 00 00000 01112356678999997 34555443
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhh-cCeEEEEeCC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDL-FDDIILISNG 384 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l-~D~VivL~~G 384 (521)
..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+...+..+ ||++++|++|
T Consensus 150 -~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G 228 (252)
T CHL00131 150 -EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNG 228 (252)
T ss_pred -cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCC
Confidence 249999999999999999999999999999999888777777666543 345666677877777776 8999999999
Q ss_pred EEEEecCHhHH
Q 044321 385 HIVYQGPREYV 395 (521)
Q Consensus 385 ~iv~~G~~~~v 395 (521)
++++.|+++.+
T Consensus 229 ~i~~~~~~~~~ 239 (252)
T CHL00131 229 KIIKTGDAELA 239 (252)
T ss_pred EEEEecChhhh
Confidence 99999998843
No 241
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.1e-33 Score=251.96 Aligned_cols=202 Identities=24% Similarity=0.278 Sum_probs=155.7
Q ss_pred CCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------------ceeeecCCc
Q 044321 168 KKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------------NRCDISQHD 222 (521)
Q Consensus 168 ~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------------~~~~v~q~d 222 (521)
++...+|.||+++.+.|+.+.++||||+|||||++.|.-+.-|..+ ..+.|+|+-
T Consensus 12 yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy 91 (242)
T COG4161 12 YGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQY 91 (242)
T ss_pred cccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhh
Confidence 3455799999999999999999999999999999999876544321 015667777
Q ss_pred cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccc
Q 044321 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTM 302 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 302 (521)
.++|++||.||+.-+. ++....+..+......++|+.+.|.+.+|..
T Consensus 92 ~lwphltv~enlieap---------------------------------~kv~gl~~~qa~~~a~ellkrlrl~~~adr~ 138 (242)
T COG4161 92 NLWPHLTVQENLIEAP---------------------------------CRVLGLSKDQALARAEKLLKRLRLKPYADRY 138 (242)
T ss_pred ccCchhHHHHHHHhhh---------------------------------HHHhCCCHHHHHHHHHHHHHHhccccccccC
Confidence 7777777777764331 2222233334455677899999999999876
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcC--CeEEEEEecChhHHHhhcCeEEE
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILE--GTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~--~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
+- .|||||+|||+|||||+..|++|++||||+++|++|...+-++++++. +.+-++++|..+.+...+.+|+.
T Consensus 139 pl-----hlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvy 213 (242)
T COG4161 139 PL-----HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVY 213 (242)
T ss_pred ce-----ecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEe
Confidence 64 599999999999999999999999999999988877776666665552 33444556777888899999999
Q ss_pred EeCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHH
Q 044321 381 ISNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFL 416 (521)
Q Consensus 381 L~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl 416 (521)
|.+|+||++|+.+. |..|.....++|+
T Consensus 214 me~g~ive~g~a~~---------ft~p~te~f~~yl 240 (242)
T COG4161 214 MENGHIVEQGDASC---------FTEPQTEAFKNYL 240 (242)
T ss_pred eecCeeEeecchhh---------ccCccHHHHHHHh
Confidence 99999999998764 5667666666655
No 242
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=6.5e-33 Score=279.98 Aligned_cols=182 Identities=21% Similarity=0.177 Sum_probs=140.2
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC------------------CceeeecCCccccCCCCHHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL------------------KNRCDISQHDVHIGEMTVRET 233 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~------------------~~~~~v~q~d~~~~~lTV~E~ 233 (521)
.+|+||||+|++|++++|+|||||||||||++|+|++++.. ...+|++|++.+|+ .|+++|
T Consensus 18 ~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~-~tv~~n 96 (275)
T cd03289 18 AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFS-GTFRKN 96 (275)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccch-hhHHHH
Confidence 58999999999999999999999999999999999986321 01278888877765 599999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-------ccccccccCc
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-------VCADTMVGDE 306 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-------~~~dt~vg~~ 306 (521)
+.+... . .. + .+..+++.+||. ..+++.+++
T Consensus 97 l~~~~~---~-~~----------------------~---------------~~~~~l~~~gL~~~~~~~p~~l~~~~~~- 134 (275)
T cd03289 97 LDPYGK---W-SD----------------------E---------------EIWKVAEEVGLKSVIEQFPGQLDFVLVD- 134 (275)
T ss_pred hhhccC---C-CH----------------------H---------------HHHHHHHHcCCHHHHHhCcccccceecC-
Confidence 853210 0 00 0 112233444543 344555554
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
....|||||||||+|||||+.+|+||||||||+++|....+.+.+.+... .+++||+++|+.+.+. .||+|++|++|+
T Consensus 135 ~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~-~~dri~vl~~G~ 213 (275)
T cd03289 135 GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAML-ECQRFLVIEENK 213 (275)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHH-hCCEEEEecCCe
Confidence 45679999999999999999999999999999999988888777777643 3556667778776665 599999999999
Q ss_pred EEEecCHhHHHH
Q 044321 386 IVYQGPREYVLE 397 (521)
Q Consensus 386 iv~~G~~~~v~~ 397 (521)
+++.|++++++.
T Consensus 214 i~~~g~~~~l~~ 225 (275)
T cd03289 214 VRQYDSIQKLLN 225 (275)
T ss_pred EeecCCHHHHhh
Confidence 999999999864
No 243
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-32 Score=274.59 Aligned_cols=190 Identities=18% Similarity=0.254 Sum_probs=141.4
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CC-----------------------CceeeecCCcc
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SL-----------------------KNRCDISQHDV 223 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~-----------------------~~~~~v~q~d~ 223 (521)
++|+|+||+|++||+++|+||||||||||+++|+|++.| .. ...+|++|+..
T Consensus 30 ~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 109 (265)
T PRK14252 30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPN 109 (265)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCc
Confidence 699999999999999999999999999999999998763 10 01267888777
Q ss_pred ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccc
Q 044321 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMV 303 (521)
Q Consensus 224 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 303 (521)
.++. |++||+.+.....+..... ..+..+..+++.+++........
T Consensus 110 ~~~~-tv~eni~~~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~l~~~l~~~~ 155 (265)
T PRK14252 110 PFPK-SIFENVAYGLRIRGVKRRS---------------------------------ILEERVENALRNAALWDEVKDRL 155 (265)
T ss_pred CCcc-hHHHHHHhHHHHcCCChHH---------------------------------HHHHHHHHHHHHcCCchhhhHHH
Confidence 6764 9999998764322111000 00112344555666532111111
Q ss_pred cCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 304 GDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 304 g~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
+..+..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. ++++|++++|+.+++.++||++++|+
T Consensus 156 -~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~ 234 (265)
T PRK14252 156 -GDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMY 234 (265)
T ss_pred -hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 1234569999999999999999999999999999998888777776666543 23567777888889999999999999
Q ss_pred CCEEEEecCHhHHH
Q 044321 383 NGHIVYQGPREYVL 396 (521)
Q Consensus 383 ~G~iv~~G~~~~v~ 396 (521)
+|++++.|+.+++.
T Consensus 235 ~G~i~~~g~~~~~~ 248 (265)
T PRK14252 235 MGELIEFGATDTIF 248 (265)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999988773
No 244
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=9.5e-33 Score=275.41 Aligned_cols=179 Identities=23% Similarity=0.266 Sum_probs=140.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------ceeeecCCccccCC--CCHHHHHHHHHHh
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------NRCDISQHDVHIGE--MTVRETLAFSARC 240 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------~~~~v~q~d~~~~~--lTV~E~l~f~~~~ 240 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+..+++. .|+.+++.+..
T Consensus 17 ~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~-- 94 (251)
T PRK09544 17 RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRP-- 94 (251)
T ss_pred ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccc--
Confidence 3699999999999999999999999999999999999887632 24788887655554 35665543210
Q ss_pred ccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHH
Q 044321 241 QGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVT 320 (521)
Q Consensus 241 ~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRva 320 (521)
+. ....+..+++.+||.+..++.+. .|||||||||+
T Consensus 95 -~~--------------------------------------~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrv~ 130 (251)
T PRK09544 95 -GT--------------------------------------KKEDILPALKRVQAGHLIDAPMQ-----KLSGGETQRVL 130 (251)
T ss_pred -cc--------------------------------------cHHHHHHHHHHcCChHHHhCChh-----hCCHHHHHHHH
Confidence 00 00123557888999877776554 59999999999
Q ss_pred HHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 321 TGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 321 IAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
||+||+.+|++|||||||+++|......+.+++.+. .+++||+++|+..++.++||+|++|+ |++++.|+++++.
T Consensus 131 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~-~~i~~~g~~~~~~ 208 (251)
T PRK09544 131 LARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLN-HHICCSGTPEVVS 208 (251)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEC-CceEeeCCHHHHh
Confidence 999999999999999999999887777766655432 24566777888889999999999996 5799999988763
No 245
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-32 Score=269.36 Aligned_cols=188 Identities=23% Similarity=0.302 Sum_probs=139.9
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~E 232 (521)
.+|+|+||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+...++ .||+|
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e 94 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTVAE 94 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccHHH
Confidence 599999999999999999999999999999999999877521 1268888776654 79999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHc--CCCccccccccCccCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKIL--GLDVCADTMVGDEILRG 310 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~~~r~ 310 (521)
|+.+..... . .. .+.... .......+++.+ |+....+.. +..
T Consensus 95 nl~~~~~~~--~--~~---~~~~~~------------------------~~~~~~~~~~~l~~~l~~~~~~~-----~~~ 138 (234)
T cd03251 95 NIAYGRPGA--T--RE---EVEEAA------------------------RAANAHEFIMELPEGYDTVIGER-----GVK 138 (234)
T ss_pred HhhccCCCC--C--HH---HHHHHH------------------------HHcCcHHHHHhcccCcceeeccC-----CCc
Confidence 997753210 0 00 000000 000123445555 555544443 456
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+.+||+++|+..++.. ||++++|++|++++.
T Consensus 139 LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~ 217 (234)
T cd03251 139 LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIVER 217 (234)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEecCCeEeee
Confidence 9999999999999999999999999999999888777777776543 34556666777777765 999999999999999
Q ss_pred cCHhHHHH
Q 044321 390 GPREYVLE 397 (521)
Q Consensus 390 G~~~~v~~ 397 (521)
|+.+++.+
T Consensus 218 ~~~~~~~~ 225 (234)
T cd03251 218 GTHEELLA 225 (234)
T ss_pred CCHHHHHH
Confidence 99887753
No 246
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1e-32 Score=274.61 Aligned_cols=183 Identities=27% Similarity=0.357 Sum_probs=145.9
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC------------------CceeeecCCccccCCCCHHHHH
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL------------------KNRCDISQHDVHIGEMTVRETL 234 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~------------------~~~~~v~q~d~~~~~lTV~E~l 234 (521)
+|+||||+|++|++++|+||||||||||+++|+|++++.. ...+|++|+...++.+|+.+|+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl 90 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYL 90 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHH
Confidence 8999999999999999999999999999999999875321 0126888887777788999998
Q ss_pred HHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChH
Q 044321 235 AFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGG 314 (521)
Q Consensus 235 ~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGG 314 (521)
.+.... .... .+....++++++.+||.+..++.++ .||||
T Consensus 91 ~~~~~~-~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 130 (248)
T PRK03695 91 TLHQPD-KTRT----------------------------------EAVASALNEVAEALGLDDKLGRSVN-----QLSGG 130 (248)
T ss_pred HhcCcc-CCCc----------------------------------HHHHHHHHHHHHHcCCHhHhcCCcc-----cCCHH
Confidence 875211 0000 0011245678889999877776654 59999
Q ss_pred HHHHHHHHHHHcC-------CCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 315 QRKRVTTGEMLVG-------PAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 315 qrQRvaIAraLv~-------~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
|||||+||+||+. +|++|||||||+++|....+.+.+++... .+++|++++|+..++..+||++++|++|+
T Consensus 131 ~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 210 (248)
T PRK03695 131 EWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGK 210 (248)
T ss_pred HHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 9999999999997 67999999999999888777777766543 35667777888888999999999999999
Q ss_pred EEEecCHhHH
Q 044321 386 IVYQGPREYV 395 (521)
Q Consensus 386 iv~~G~~~~v 395 (521)
+++.|+.+++
T Consensus 211 i~~~g~~~~~ 220 (248)
T PRK03695 211 LLASGRRDEV 220 (248)
T ss_pred EEEECCHHHH
Confidence 9999998776
No 247
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-32 Score=267.24 Aligned_cols=188 Identities=20% Similarity=0.299 Sum_probs=135.2
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~E 232 (521)
.+|+|+||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+...++ .|+.|
T Consensus 17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~ 95 (229)
T cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFS-GTIME 95 (229)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhh-hHHHH
Confidence 599999999999999999999999999999999999876521 1267788765555 48888
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHc--CCCccccccccCccCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKIL--GLDVCADTMVGDEILRG 310 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~~~r~ 310 (521)
|+.+..... .. ..+..... .......++.+ |+....+. .+..
T Consensus 96 ~~~~~~~~~---~~----------------------~~~~~~~~------~~~l~~~~~~~~~~~~~~~~~-----~~~~ 139 (229)
T cd03254 96 NIRLGRPNA---TD----------------------EEVIEAAK------EAGAHDFIMKLPNGYDTVLGE-----NGGN 139 (229)
T ss_pred HHhccCCCC---CH----------------------HHHHHHHH------HhChHHHHHhCcccccCHhhc-----CCCc
Confidence 887642110 00 00000000 00112233333 34333332 3457
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
|||||||||+||+||+.+|++|||||||+++|....+.+.+++... .+.+|++++|+..++. .||++++|++|++++.
T Consensus 140 LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~i~~l~~g~~~~~ 218 (229)
T cd03254 140 LSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIK-NADKILVLDDGKIIEE 218 (229)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh-hCCEEEEEeCCeEEEe
Confidence 9999999999999999999999999999999988777777766543 3455666667777764 5999999999999999
Q ss_pred cCHhHHHH
Q 044321 390 GPREYVLE 397 (521)
Q Consensus 390 G~~~~v~~ 397 (521)
|+.+++..
T Consensus 219 ~~~~~~~~ 226 (229)
T cd03254 219 GTHDELLA 226 (229)
T ss_pred CCHHHHHh
Confidence 99877643
No 248
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=2.6e-32 Score=269.41 Aligned_cols=189 Identities=22% Similarity=0.304 Sum_probs=136.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~ 231 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..+++ .||+
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~ 94 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GTIA 94 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hhHH
Confidence 4699999999999999999999999999999999999876521 1367777765554 6888
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHc--CCCccccccccCccCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKIL--GLDVCADTMVGDEILR 309 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~~~r 309 (521)
||+.+...... . ..+..... ......+++.+ ++....+. .+.
T Consensus 95 e~l~~~~~~~~--~-----~~~~~~~~------------------------~~~~~~~~~~l~~~~~~~~~~-----~~~ 138 (238)
T cd03249 95 ENIRYGKPDAT--D-----EEVEEAAK------------------------KANIHDFIMSLPDGYDTLVGE-----RGS 138 (238)
T ss_pred HHhhccCCCCC--H-----HHHHHHHH------------------------HcChHHHHHhhccccceeecc-----CCc
Confidence 88876421100 0 00000000 00011222333 44333333 345
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++... .+.++++++|+.+++. +||++++|++|++++
T Consensus 139 ~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~ 217 (238)
T cd03249 139 QLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-NADLIAVLQNGQVVE 217 (238)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-hCCEEEEEECCEEEE
Confidence 69999999999999999999999999999999988877777776543 3455666677777775 899999999999999
Q ss_pred ecCHhHHHH
Q 044321 389 QGPREYVLE 397 (521)
Q Consensus 389 ~G~~~~v~~ 397 (521)
.|+.+++..
T Consensus 218 ~~~~~~~~~ 226 (238)
T cd03249 218 QGTHDELMA 226 (238)
T ss_pred eCCHHHHhh
Confidence 999887754
No 249
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.1e-32 Score=268.78 Aligned_cols=178 Identities=27% Similarity=0.348 Sum_probs=133.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~ 231 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+.+|..+ ..+|++|+...++ .||.
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~ 95 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GTLR 95 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-chHH
Confidence 4599999999999999999999999999999999999876421 1267788766555 6888
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc------C
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG------D 305 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg------~ 305 (521)
||+.+..... . ...+..+++.++|.+..+..+. .
T Consensus 96 e~l~~~~~~~---~-------------------------------------~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 135 (220)
T cd03245 96 DNITLGAPLA---D-------------------------------------DERILRAAELAGVTDFVNKHPNGLDLQIG 135 (220)
T ss_pred HHhhcCCCCC---C-------------------------------------HHHHHHHHHHcCcHHHHHhccccccceec
Confidence 8876632100 0 0012234555555544433221 1
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
..+..|||||||||+||+||+.+|++|||||||+++|......+.+++.+. ..++||+++|+...+ ++||++++|++|
T Consensus 136 ~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g 214 (220)
T cd03245 136 ERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSG 214 (220)
T ss_pred CCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCC
Confidence 234579999999999999999999999999999999988888777777654 235666667777665 799999999999
Q ss_pred EEEEec
Q 044321 385 HIVYQG 390 (521)
Q Consensus 385 ~iv~~G 390 (521)
++++.|
T Consensus 215 ~i~~~~ 220 (220)
T cd03245 215 RIVADG 220 (220)
T ss_pred eEeecC
Confidence 998764
No 250
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.2e-32 Score=270.10 Aligned_cols=180 Identities=21% Similarity=0.261 Sum_probs=137.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~ 231 (521)
+++|+||||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..+++ .|++
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~ 98 (225)
T PRK10247 20 AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-DTVY 98 (225)
T ss_pred ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEeccccccc-ccHH
Confidence 4699999999999999999999999999999999998876521 1267888776665 5999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCccCCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDEILRG 310 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~~r~ 310 (521)
||+.+........ .....+..+++.+||. ...++.+ ..
T Consensus 99 enl~~~~~~~~~~------------------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~~ 137 (225)
T PRK10247 99 DNLIFPWQIRNQQ------------------------------------PDPAIFLDDLERFALPDTILTKNI-----AE 137 (225)
T ss_pred HHHHhHHhhcCCC------------------------------------hHHHHHHHHHHHcCCChHHhcCCc-----cc
Confidence 9988753221100 0011345688899995 3555555 45
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEe-CCEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILIS-NGHI 386 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~-~G~i 386 (521)
|||||+|||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+..++. .||++++|+ ++..
T Consensus 138 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~ 216 (225)
T PRK10247 138 LSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGE 216 (225)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccch
Confidence 9999999999999999999999999999999888777777665543 2455666677777774 699999995 6667
Q ss_pred EEecCHh
Q 044321 387 VYQGPRE 393 (521)
Q Consensus 387 v~~G~~~ 393 (521)
+.+|.++
T Consensus 217 ~~~~~~~ 223 (225)
T PRK10247 217 MQEARYE 223 (225)
T ss_pred Hhhhhhc
Confidence 7777654
No 251
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=2.5e-32 Score=274.86 Aligned_cols=187 Identities=25% Similarity=0.277 Sum_probs=142.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCc--cccC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHD--VHIG 226 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d--~~~~ 226 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+. .+++
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 104 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNP 104 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCC
Confidence 4699999999999999999999999999999999999876421 125677765 2445
Q ss_pred CCCHHHHHHHHHHhc-cCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-cccccccc
Q 044321 227 EMTVRETLAFSARCQ-GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVG 304 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~-~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg 304 (521)
..|+.+++.+..... .. + ..+....++.+++.+||. ...++.+
T Consensus 105 ~~t~~~~l~~~~~~~~~~-----------------------~-----------~~~~~~~~~~~l~~~gl~~~~~~~~~- 149 (268)
T PRK10419 105 RKTVREIIREPLRHLLSL-----------------------D-----------KAERLARASEMLRAVDLDDSVLDKRP- 149 (268)
T ss_pred CCCHHHHHHHHHHhhccC-----------------------C-----------HHHHHHHHHHHHHHcCCChhHhhCCC-
Confidence 678888876542110 00 0 001122456788899996 4555554
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .++++|+++|+...+.++||++++|
T Consensus 150 ----~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l 225 (268)
T PRK10419 150 ----PQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVM 225 (268)
T ss_pred ----ccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEE
Confidence 459999999999999999999999999999998887555555544332 2566777788888899999999999
Q ss_pred eCCEEEEecCHhHHH
Q 044321 382 SNGHIVYQGPREYVL 396 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~ 396 (521)
++|++++.|+++++.
T Consensus 226 ~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 226 DNGQIVETQPVGDKL 240 (268)
T ss_pred ECCEEeeeCChhhcc
Confidence 999999999988763
No 252
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-33 Score=300.72 Aligned_cols=189 Identities=22% Similarity=0.268 Sum_probs=150.6
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCCC
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEMT 229 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~lT 229 (521)
++.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+...++.+|
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRS 89 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCC
Confidence 45799999999999999999999999999999999999876421 1368899887888999
Q ss_pred HHHHHHHHHH-hccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 230 VRETLAFSAR-CQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 230 V~E~l~f~~~-~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
|.||+.++.. ..+... +. .+....++.+++.+||.+..++.++
T Consensus 90 v~~~l~~~~~~~~~~~~---------------------~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~---- 133 (491)
T PRK10982 90 VMDNMWLGRYPTKGMFV---------------------DQ-----------DKMYRDTKAIFDELDIDIDPRAKVA---- 133 (491)
T ss_pred HHHHhhccccccccccc---------------------CH-----------HHHHHHHHHHHHHcCCCCCccCchh----
Confidence 9999987531 100000 00 0011245678899999877776665
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+.+||+++|+.+++..+||+|++|++|++
T Consensus 134 -~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i 212 (491)
T PRK10982 134 -TLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQW 212 (491)
T ss_pred -hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 59999999999999999999999999999999887777776665443 355667778888899999999999999999
Q ss_pred EEecCHhHH
Q 044321 387 VYQGPREYV 395 (521)
Q Consensus 387 v~~G~~~~v 395 (521)
++.|+++++
T Consensus 213 ~~~~~~~~~ 221 (491)
T PRK10982 213 IATQPLAGL 221 (491)
T ss_pred EeecChhhC
Confidence 999987664
No 253
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=3.9e-32 Score=265.33 Aligned_cols=177 Identities=26% Similarity=0.343 Sum_probs=137.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~~~l 228 (521)
+.+|+||||++++|++++|+||||||||||+++|+|.++|+.+ ..+|++|+...++.+
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFL 97 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCC
Confidence 5699999999999999999999999999999999999876421 137788888778889
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
|+.||+.+......... . .+....+.++++.+||.+..++.+.
T Consensus 98 t~~~n~~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 140 (220)
T TIGR02982 98 TARQNVQMALELQPNLS---------Y------------------------QEARERARAMLEAVGLGDHLDYYPH---- 140 (220)
T ss_pred CHHHHHHHHHHhccCCC---------H------------------------HHHHHHHHHHHHHcCChhhhhcChh----
Confidence 99999988643211000 0 0111245678899999877776654
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
.||||||||++||++|+.+|++|||||||+++|....+.+.+++.+. .+.++++++|+.. +.++||+|++|++|+
T Consensus 141 -~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~-~~~~~d~v~~l~~g~ 218 (220)
T TIGR02982 141 -NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR-ILDVADRIVHMEDGK 218 (220)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHhhCCEEEEEECCE
Confidence 59999999999999999999999999999998887766655555432 2455555566665 568999999999998
Q ss_pred E
Q 044321 386 I 386 (521)
Q Consensus 386 i 386 (521)
+
T Consensus 219 ~ 219 (220)
T TIGR02982 219 L 219 (220)
T ss_pred E
Confidence 6
No 254
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.8e-32 Score=298.70 Aligned_cols=190 Identities=25% Similarity=0.273 Sum_probs=148.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC--CCC--------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS--SLK--------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~--~~~--------------------~~~~v~q~d~~~~~l 228 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++| ..+ ..+|++|+...++.+
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPEL 93 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCC
Confidence 4699999999999999999999999999999999999875 211 136889988888899
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccc-cccccCcc
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCA-DTMVGDEI 307 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~-dt~vg~~~ 307 (521)
||.||+.+........... .. .+....++.+++.+||.+.. ++.++
T Consensus 94 tv~~~l~~~~~~~~~~~~~-------------------~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~~--- 140 (500)
T TIGR02633 94 SVAENIFLGNEITLPGGRM-------------------AY-----------NAMYLRAKNLLRELQLDADNVTRPVG--- 140 (500)
T ss_pred cHHHHHHhhcccccccccc-------------------CH-----------HHHHHHHHHHHHHcCCCCCcccCchh---
Confidence 9999998764221000000 00 01122456789999997654 34454
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+..++..+||+|++|++|+
T Consensus 141 --~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~ 218 (500)
T TIGR02633 141 --DYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQ 218 (500)
T ss_pred --hCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCe
Confidence 59999999999999999999999999999999888777776665443 35567777899899999999999999999
Q ss_pred EEEecCHhHH
Q 044321 386 IVYQGPREYV 395 (521)
Q Consensus 386 iv~~G~~~~v 395 (521)
+++.|+++++
T Consensus 219 i~~~~~~~~~ 228 (500)
T TIGR02633 219 HVATKDMSTM 228 (500)
T ss_pred EeeecCcccC
Confidence 9999987543
No 255
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=7e-32 Score=267.80 Aligned_cols=200 Identities=20% Similarity=0.241 Sum_probs=136.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC--CCCCCce---------------------eeecCCccccCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL--DSSLKNR---------------------CDISQHDVHIGE 227 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l--~~~~~~~---------------------~~v~q~d~~~~~ 227 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|++ +|. .+. +|++|+...++.
T Consensus 14 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~-~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (248)
T PRK09580 14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVT-GGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPG 92 (248)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCC-ceEEEECCCccccCCHHHHhhcceEEEecCchhccc
Confidence 46999999999999999999999999999999999985 343 222 344444444444
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-cccccccCc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CADTMVGDE 306 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~ 306 (521)
+|+.+++.+.... +.. ....... ........++.+++.++|+. ..++.+.
T Consensus 93 ~~~~~~~~~~~~~------------~~~------~~~~~~~---------~~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 143 (248)
T PRK09580 93 VSNQFFLQTALNA------------VRS------YRGQEPL---------DRFDFQDLMEEKIALLKMPEDLLTRSVN-- 143 (248)
T ss_pred hhHHHHHHHhhhh------------hhc------ccccccc---------hHHHHHHHHHHHHHHcCCChhhcccCCC--
Confidence 4443333221100 000 0000000 00011234567888899953 4444432
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhh-cCeEEEEeC
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDL-FDDIILISN 383 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l-~D~VivL~~ 383 (521)
+.|||||||||+||+||+.+|++|||||||+++|....+.+.+++... .+++||+++|+...+... +|+|++|++
T Consensus 144 --~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~ 221 (248)
T PRK09580 144 --VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQ 221 (248)
T ss_pred --CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEEC
Confidence 259999999999999999999999999999999988777777655433 245566667777777776 899999999
Q ss_pred CEEEEecCHhHHHHHHHHcC
Q 044321 384 GHIVYQGPREYVLEFFKFMG 403 (521)
Q Consensus 384 G~iv~~G~~~~v~~~f~~~g 403 (521)
|++++.|+++.+ +.++..+
T Consensus 222 g~i~~~g~~~~~-~~~~~~~ 240 (248)
T PRK09580 222 GRIVKSGDFTLV-KQLEEQG 240 (248)
T ss_pred CeEEEeCCHHHH-HHHHhcC
Confidence 999999998855 3334333
No 256
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=5.6e-32 Score=299.44 Aligned_cols=241 Identities=23% Similarity=0.319 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCC-ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLP-TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLN 162 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~ 162 (521)
.++.+..++|+.++++.+.+. .........+.+ ...++|+|+++.+..
T Consensus 301 ~~~~~~~~~ri~~~l~~~~~~-----~~~~~~~~~~~~~~~~i~~~~v~f~y~~-------------------------- 349 (576)
T TIGR02204 301 LQRAAGAAERLIELLQAEPDI-----KAPAHPKTLPVPLRGEIEFEQVNFAYPA-------------------------- 349 (576)
T ss_pred HHHHHHHHHHHHHHhCCCCcC-----CCCCCCccCCcCCCceEEEEEEEEECCC--------------------------
Confidence 456777788888887654331 000000001112 125899999998631
Q ss_pred cccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCcc
Q 044321 163 ILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDV 223 (521)
Q Consensus 163 ~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~ 223 (521)
...+.+|+|+||+|+|||.++|+||||||||||+++|+|+++|..+ ..+|++|++.
T Consensus 350 -----~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~ 424 (576)
T TIGR02204 350 -----RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPV 424 (576)
T ss_pred -----CCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCc
Confidence 0113699999999999999999999999999999999999988632 1278888765
Q ss_pred ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccc
Q 044321 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMV 303 (521)
Q Consensus 224 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 303 (521)
+++.|++||+.++.. +.+.+....+....+ ..+.++ .++...||.+
T Consensus 425 -lf~~Ti~~Ni~~~~~-------------------------~~~~~~~~~~l~~~~------l~~~i~--~l~~gl~t~i 470 (576)
T TIGR02204 425 -LFAASVMENIRYGRP-------------------------DATDEEVEAAARAAH------AHEFIS--ALPEGYDTYL 470 (576)
T ss_pred -cccccHHHHHhcCCC-------------------------CCCHHHHHHHHHHcC------cHHHHH--hCCCCCCcee
Confidence 557899999987521 011111111111000 111222 2456678888
Q ss_pred cCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 304 GDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 304 g~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
|+ ....||||||||++||||++.+|++|+|||||+++|....+.+.+.+... .+.++|+++|+. +....||+|++|+
T Consensus 471 ~~-~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~-~~~~~~d~vi~l~ 548 (576)
T TIGR02204 471 GE-RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRL-ATVLKADRIVVMD 548 (576)
T ss_pred CC-CCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecch-HHHHhCCEEEEEE
Confidence 86 45679999999999999999999999999999988877766665554443 334444455554 4557899999999
Q ss_pred CCEEEEecCHhHHH
Q 044321 383 NGHIVYQGPREYVL 396 (521)
Q Consensus 383 ~G~iv~~G~~~~v~ 396 (521)
+|+++..|+++++.
T Consensus 549 ~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 549 QGRIVAQGTHAELI 562 (576)
T ss_pred CCEEEeeecHHHHH
Confidence 99999999998874
No 257
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=7e-32 Score=297.67 Aligned_cols=212 Identities=25% Similarity=0.284 Sum_probs=155.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------ceeeecCCccccCCCCHHHHHHHHHHh-c
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------NRCDISQHDVHIGEMTVRETLAFSARC-Q 241 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------~~~~v~q~d~~~~~lTV~E~l~f~~~~-~ 241 (521)
+++|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|++.+++.+||.||+.++... .
T Consensus 20 ~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~ 99 (556)
T PRK11819 20 KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVK 99 (556)
T ss_pred CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHHHH
Confidence 4699999999999999999999999999999999999887532 237999998888899999999875321 0
Q ss_pred cCchhhHHHHHHHHHHHhcCCCCCCChHH-------HHHHH-hhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 242 GVGSRYEMLAELTRREKAAGIKPDPDIDV-------FMKAA-ATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 242 ~~~~~~~~~~~l~~~e~~~~i~~~~~~~~-------~~~~~-~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+. ............ .+..+... +.... .....+....++.+++.+||.. .+..++ .|||
T Consensus 100 ~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~-----~LSg 166 (556)
T PRK11819 100 AA------LDRFNEIYAAYA-EPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDAKVT-----KLSG 166 (556)
T ss_pred HH------HHHHHHHHHHhc-cCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccCchh-----hcCH
Confidence 00 000000000000 00000000 00000 0011122345678899999963 565554 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEE-EecCH
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIV-YQGPR 392 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv-~~G~~ 392 (521)
||||||+||+||+.+|++|||||||+++|......+.++++..++ +||+++|+...+..+||+|++|++|+++ +.|+.
T Consensus 167 Gqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~-tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g~~ 245 (556)
T PRK11819 167 GERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPG-TVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNY 245 (556)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCC-eEEEEeCCHHHHHhhcCeEEEEeCCEEEEecCCH
Confidence 999999999999999999999999999999999999998887765 5666788888999999999999999986 88988
Q ss_pred hHHH
Q 044321 393 EYVL 396 (521)
Q Consensus 393 ~~v~ 396 (521)
+++.
T Consensus 246 ~~~~ 249 (556)
T PRK11819 246 SSWL 249 (556)
T ss_pred HHHH
Confidence 7653
No 258
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.7e-32 Score=264.65 Aligned_cols=172 Identities=22% Similarity=0.250 Sum_probs=133.5
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCccccC
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDVHIG 226 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~~~~ 226 (521)
++.+|+||||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+...++
T Consensus 10 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (206)
T TIGR03608 10 DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIE 89 (206)
T ss_pred CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhcc
Confidence 35799999999999999999999999999999999999876421 1367788877778
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCc
Q 044321 227 EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDE 306 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 306 (521)
.+|++||+.|.....+... .+....+..+++.+||.+..++.+.
T Consensus 90 ~~t~~e~~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-- 133 (206)
T TIGR03608 90 NETVEENLDLGLKYKKLSK----------------------------------KEKREKKKEALEKVGLNLKLKQKIY-- 133 (206)
T ss_pred CCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCchhhhcCChh--
Confidence 8999999988643221100 0011235668899999877776654
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
.||||||||++||+||+.+|++|||||||+++|....+.+.+++++. .++++++++|+... ..+||++++|
T Consensus 134 ---~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~-~~~~d~i~~l 206 (206)
T TIGR03608 134 ---ELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEV-AKQADRVIEL 206 (206)
T ss_pred ---hCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HhhcCEEEeC
Confidence 59999999999999999999999999999998887777777766543 24555556677654 4689999875
No 259
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.8e-32 Score=327.54 Aligned_cols=240 Identities=18% Similarity=0.186 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhc-CC-CCC-ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhh
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARV-GI-SLP-TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNS 160 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-g~-~~~-~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~ 160 (521)
.+....+++|+.++++.++|... ..+.. .. ..| ...|+|+||++.|..
T Consensus 1199 ~e~~~~sveRi~e~~~~~~E~~~-----~~~~~~~~~~wp~~g~I~f~nVsf~Y~~------------------------ 1249 (1622)
T PLN03130 1199 AENSLNAVERVGTYIDLPSEAPL-----VIENNRPPPGWPSSGSIKFEDVVLRYRP------------------------ 1249 (1622)
T ss_pred HHHHHHHHHHHHHHhCCCCcccc-----cccCCCCCCCCCCCCcEEEEEEEEEeCC------------------------
Confidence 35667888999998876665210 00000 01 112 246999999999731
Q ss_pred cccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCC
Q 044321 161 LNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQH 221 (521)
Q Consensus 161 ~~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~ 221 (521)
+...+|+||||+|+|||.+||+|++|||||||+++|.|+++|..+ ..++|+|+
T Consensus 1250 --------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQd 1321 (1622)
T PLN03130 1250 --------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQA 1321 (1622)
T ss_pred --------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCC
Confidence 112599999999999999999999999999999999999988632 12789998
Q ss_pred ccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccc
Q 044321 222 DVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADT 301 (521)
Q Consensus 222 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 301 (521)
+.+|. .|++|||.++.. .+.+...++....+ ..+.+ + .++..+||
T Consensus 1322 p~LF~-GTIreNLd~~~~--------------------------~tdeei~~Al~~a~-----l~~~I-~--~lp~GLdt 1366 (1622)
T PLN03130 1322 PVLFS-GTVRFNLDPFNE--------------------------HNDADLWESLERAH-----LKDVI-R--RNSLGLDA 1366 (1622)
T ss_pred Ccccc-ccHHHHhCcCCC--------------------------CCHHHHHHHHHHcC-----cHHHH-H--hCccccCc
Confidence 87664 699999976421 01111122211111 11222 2 36778899
Q ss_pred cccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEE
Q 044321 302 MVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 302 ~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
.||+ .+..||||||||++|||||+++|+||||||||+++|.+.-+.+.+.+++. .+.|+|++.|.... ...||+|++
T Consensus 1367 ~Vge-~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~t-I~~~DrIlV 1444 (1622)
T PLN03130 1367 EVSE-AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT-IIDCDRILV 1444 (1622)
T ss_pred cccC-CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHH-HHhCCEEEE
Confidence 9986 45679999999999999999999999999999988877776666665543 34455555566544 456999999
Q ss_pred EeCCEEEEecCHhHHHH
Q 044321 381 ISNGHIVYQGPREYVLE 397 (521)
Q Consensus 381 L~~G~iv~~G~~~~v~~ 397 (521)
|++|+|++.|+++++++
T Consensus 1445 Ld~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1445 LDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred EECCEEEEeCCHHHHHh
Confidence 99999999999999863
No 260
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3e-32 Score=328.33 Aligned_cols=191 Identities=25% Similarity=0.331 Sum_probs=162.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV~E 232 (521)
+.+|+||||.|++||+++|+||||||||||+|+|+|.+.|+.+ ..+|++|.+.+++.+||+|
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E 2031 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGRE 2031 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHH
Confidence 5799999999999999999999999999999999999887531 1378999999999999999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
++.+.++..+.... +.+..++++|+.+||.+..|+.++. ||
T Consensus 2032 ~L~l~a~l~g~~~~----------------------------------~~~~~v~~lLe~lgL~~~~dk~~~~-----LS 2072 (2272)
T TIGR01257 2032 HLYLYARLRGVPAE----------------------------------EIEKVANWSIQSLGLSLYADRLAGT-----YS 2072 (2272)
T ss_pred HHHHHHHhcCCCHH----------------------------------HHHHHHHHHHHHcCCHHHhcCChhh-----CC
Confidence 99987665443110 1123456789999999888877764 99
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
|||||||+||+||+++|++|||||||+++|....+.+.+++.+. .+++||+++|+.+++..+||+|++|.+|++++.|
T Consensus 2073 GGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~G 2152 (2272)
T TIGR01257 2073 GGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLG 2152 (2272)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999988777777766543 3567777889999999999999999999999999
Q ss_pred CHhHHHHHHH
Q 044321 391 PREYVLEFFK 400 (521)
Q Consensus 391 ~~~~v~~~f~ 400 (521)
+++++...|.
T Consensus 2153 s~q~Lk~~~g 2162 (2272)
T TIGR01257 2153 TIQHLKSKFG 2162 (2272)
T ss_pred CHHHHHHHhC
Confidence 9999987664
No 261
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=5.4e-32 Score=296.34 Aligned_cols=187 Identities=21% Similarity=0.242 Sum_probs=147.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------------~~~~v~q~d~~ 224 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+
T Consensus 297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l 376 (520)
T TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDL 376 (520)
T ss_pred ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCccc
Confidence 5799999999999999999999999999999999999865310 12678887777
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-----cc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-----CA 299 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-----~~ 299 (521)
++.+||.||+.+...+ .... .+....+..+++.+||.+ ..
T Consensus 377 ~~~~tv~e~l~~~~~~-~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 421 (520)
T TIGR03269 377 YPHRTVLDNLTEAIGL-ELPD----------------------------------ELARMKAVITLKMVGFDEEKAEEIL 421 (520)
T ss_pred CCCCcHHHHHHHHHHc-CCCH----------------------------------HHHHHHHHHHHHhCCCCCccchhhh
Confidence 7888999998775321 0000 001123566889999975 34
Q ss_pred cccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcC
Q 044321 300 DTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFD 376 (521)
Q Consensus 300 dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D 376 (521)
++.+ ..|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+...+.++||
T Consensus 422 ~~~~-----~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d 496 (520)
T TIGR03269 422 DKYP-----DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCD 496 (520)
T ss_pred hCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCC
Confidence 5555 459999999999999999999999999999998887777766665432 24566777888899999999
Q ss_pred eEEEEeCCEEEEecCHhHHHH
Q 044321 377 DIILISNGHIVYQGPREYVLE 397 (521)
Q Consensus 377 ~VivL~~G~iv~~G~~~~v~~ 397 (521)
++++|++|++++.|+++++.+
T Consensus 497 ~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 497 RAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred EEEEEECCEEEEECCHHHHHh
Confidence 999999999999999887743
No 262
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-32 Score=274.20 Aligned_cols=188 Identities=21% Similarity=0.268 Sum_probs=141.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------ceeeecCCcccc--CCCCHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------NRCDISQHDVHI--GEMTVRE 232 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------~~~~v~q~d~~~--~~lTV~E 232 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+. ...++.+
T Consensus 20 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~ 99 (272)
T PRK15056 20 HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVED 99 (272)
T ss_pred cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhh
Confidence 4699999999999999999999999999999999999877521 135677764331 2345677
Q ss_pred HHHHHHHhc-cCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCC
Q 044321 233 TLAFSARCQ-GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGI 311 (521)
Q Consensus 233 ~l~f~~~~~-~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~L 311 (521)
++.++.... +. .... .......+..+++.+||.+..++.++ .|
T Consensus 100 ~i~~~~~~~~~~-------------------~~~~------------~~~~~~~~~~~l~~~gl~~~~~~~~~-----~L 143 (272)
T PRK15056 100 VVMMGRYGHMGW-------------------LRRA------------KKRDRQIVTAALARVDMVEFRHRQIG-----EL 143 (272)
T ss_pred heeccccccccc-------------------ccCC------------CHHHHHHHHHHHHHcCChhHhcCCcc-----cC
Confidence 665431100 00 0000 00012235668899999887777665 49
Q ss_pred ChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 312 SGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 312 SGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+.+||+++|+..++.++||+++++ +|++++.
T Consensus 144 SgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~ 222 (272)
T PRK15056 144 SGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLAS 222 (272)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEee
Confidence 999999999999999999999999999999888777777766543 3456677788888899999999877 8999999
Q ss_pred cCHhHH
Q 044321 390 GPREYV 395 (521)
Q Consensus 390 G~~~~v 395 (521)
|+++++
T Consensus 223 g~~~~~ 228 (272)
T PRK15056 223 GPTETT 228 (272)
T ss_pred cCHHhc
Confidence 998876
No 263
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-32 Score=276.52 Aligned_cols=203 Identities=22% Similarity=0.273 Sum_probs=146.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----CCC---------------------ceeeecCCccc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----SLK---------------------NRCDISQHDVH 224 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~~~---------------------~~~~v~q~d~~ 224 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|++.+ ..+ ..+|++|+..+
T Consensus 58 ~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l 137 (305)
T PRK14264 58 DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNP 137 (305)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCcc
Confidence 3599999999999999999999999999999999998752 110 13688888766
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++ .||+||+.+.....+.... ..... ..+. . . .......+..+++.++|........
T Consensus 138 ~~-~tv~enl~~~~~~~~~~~~-~~~~~------~~~~--~-~-----------~~~~~~~~~~~l~~~~l~~~~~~~~- 194 (305)
T PRK14264 138 FP-KSIRENISYGPRKHGDINT-GLLAR------LLGR--D-D-----------KDAEDELVERSLRQAALWDEVNDRL- 194 (305)
T ss_pred cc-ccHHHHHHhHHhhcccccc-ccccc------cccc--C-c-----------hHHHHHHHHHHHHHcCCchhhhHHh-
Confidence 66 5999999886432110000 00000 0000 0 0 0011234566788888854332222
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeE-EEEe
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDI-ILIS 382 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~V-ivL~ 382 (521)
+..++.|||||||||+||+||+.+|++|||||||+++|......+.+++++. +..+||+++|+...+.++||++ ++|+
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~ 274 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLT 274 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEec
Confidence 2345679999999999999999999999999999999888777777766544 2356677788888899999997 5789
Q ss_pred CCEEEEecCHhHHH
Q 044321 383 NGHIVYQGPREYVL 396 (521)
Q Consensus 383 ~G~iv~~G~~~~v~ 396 (521)
+|++++.|+++++.
T Consensus 275 ~G~i~~~g~~~~~~ 288 (305)
T PRK14264 275 GGELVEYDDTDKIF 288 (305)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999988763
No 264
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.5e-32 Score=327.05 Aligned_cols=241 Identities=17% Similarity=0.190 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCC-CCC-ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGI-SLP-TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSL 161 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~-~~~-~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~ 161 (521)
.+....+++|+.++++.++|... ... +.... ..| ..+|+|+||++.|..
T Consensus 1196 ~~~~~~s~eRi~e~~~~~~e~~~--~~~--~~~~~~~~p~~g~I~f~nVsf~Y~~------------------------- 1246 (1495)
T PLN03232 1196 AENSLNSVERVGNYIDLPSEATA--IIE--NNRPVSGWPSRGSIKFEDVHLRYRP------------------------- 1246 (1495)
T ss_pred HHHHHHHHHHHHHHhcCCccccc--ccc--CCCCCCCCCCCCcEEEEEEEEEECC-------------------------
Confidence 44567788999999876665210 000 00000 112 246999999999731
Q ss_pred ccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCc
Q 044321 162 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHD 222 (521)
Q Consensus 162 ~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d 222 (521)
+...+|+||||+|+|||.+||+|+||||||||+++|.|+++|+.+ ..++|+|++
T Consensus 1247 -------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp 1319 (1495)
T PLN03232 1247 -------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSP 1319 (1495)
T ss_pred -------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCC
Confidence 123599999999999999999999999999999999999988632 128899988
Q ss_pred cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccc
Q 044321 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTM 302 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 302 (521)
.+|. .|++|||.+... . +.+...++....+ ..+. ++ .++...||.
T Consensus 1320 ~LF~-gTIr~NL~~~~~---~-----------------------sdeei~~al~~a~-----l~~~-I~--~lp~GLdt~ 1364 (1495)
T PLN03232 1320 VLFS-GTVRFNIDPFSE---H-----------------------NDADLWEALERAH-----IKDV-ID--RNPFGLDAE 1364 (1495)
T ss_pred eeeC-ccHHHHcCCCCC---C-----------------------CHHHHHHHHHHcC-----CHHH-HH--hCcCCCCce
Confidence 7665 699999976421 0 1111111111111 1111 11 366778999
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
+|+ .+..||||||||++|||||+++|+||||||||+++|.+..+.+.+.+++. .+.|+|+++|... +...||+|++|
T Consensus 1365 v~e-~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~-ti~~~DrIlVL 1442 (1495)
T PLN03232 1365 VSE-GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLN-TIIDCDKILVL 1442 (1495)
T ss_pred ecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHH-HHHhCCEEEEE
Confidence 986 45679999999999999999999999999999988887777777666543 3444555556654 44569999999
Q ss_pred eCCEEEEecCHhHHHH
Q 044321 382 SNGHIVYQGPREYVLE 397 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~~ 397 (521)
++|+|++.|+++++++
T Consensus 1443 ~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1443 SSGQVLEYDSPQELLS 1458 (1495)
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999999863
No 265
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2e-32 Score=250.88 Aligned_cols=181 Identities=26% Similarity=0.333 Sum_probs=146.1
Q ss_pred CCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCcc
Q 044321 167 RKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDV 223 (521)
Q Consensus 167 ~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~ 223 (521)
..+..+||++|++.|++||.++|+|||||||||||-+|+|+..|+.. ..++|+|...
T Consensus 19 ~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~ 98 (228)
T COG4181 19 GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFH 98 (228)
T ss_pred CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeee
Confidence 34667899999999999999999999999999999999999887632 1289999999
Q ss_pred ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccc
Q 044321 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMV 303 (521)
Q Consensus 224 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 303 (521)
++|+||..||+...+.+.+-... +.......+|+.+||.+..+.++
T Consensus 99 Lip~ltAlENV~lPleL~ge~~~----------------------------------~~~~~A~~lL~~vGLg~Rl~HyP 144 (228)
T COG4181 99 LIPNLTALENVALPLELRGESSA----------------------------------DSRAGAKALLEAVGLGKRLTHYP 144 (228)
T ss_pred ccccchhhhhccchhhhcCCccc----------------------------------cHHHHHHHHHHHhCcccccccCc
Confidence 99999999999987766542110 11123456899999998877666
Q ss_pred cCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhH----HHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEE
Q 044321 304 GDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTT----FQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 304 g~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~----~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
+ +|||||+|||+||||++..|+|||.||||-++| .++.+.|..+..+ .+|++|.+||+. .+...|||++
T Consensus 145 ~-----qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre-~G~TlVlVTHD~-~LA~Rc~R~~ 217 (228)
T COG4181 145 A-----QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE-RGTTLVLVTHDP-QLAARCDRQL 217 (228)
T ss_pred c-----ccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhh-cCceEEEEeCCH-HHHHhhhhee
Confidence 5 599999999999999999999999999999655 4566666665544 466666677764 5677899999
Q ss_pred EEeCCEEEE
Q 044321 380 LISNGHIVY 388 (521)
Q Consensus 380 vL~~G~iv~ 388 (521)
-|..|+++.
T Consensus 218 r~~~G~l~~ 226 (228)
T COG4181 218 RLRSGRLVE 226 (228)
T ss_pred eeecceecc
Confidence 999999974
No 266
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=4.8e-32 Score=297.32 Aligned_cols=187 Identities=21% Similarity=0.211 Sum_probs=143.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC----CCc------------------------eeeecCCc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS----LKN------------------------RCDISQHD 222 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~----~~~------------------------~~~v~q~d 222 (521)
+.+|+||||+|.+||+++|+|||||||||||++|+|+++|. ..+ .+|++|+.
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 46999999999999999999999999999999999998751 111 25666664
Q ss_pred c--ccCCCCHHHHHHHHHHhc-cCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc--
Q 044321 223 V--HIGEMTVRETLAFSARCQ-GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-- 297 (521)
Q Consensus 223 ~--~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-- 297 (521)
. .++.+|+.+++.+..... +.. ..+....++++++.+||.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~ 147 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMR----------------------------------REAARGEILNCLDRVGIRQAA 147 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHCCCCChH
Confidence 2 345567777765432110 000 0112234677899999975
Q ss_pred -cccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHh
Q 044321 298 -CADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYD 373 (521)
Q Consensus 298 -~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~ 373 (521)
..++.+ ..|||||||||+||+||+.+|++|||||||+++|......+.+++.++ .+.+||+++|+...+..
T Consensus 148 ~~~~~~~-----~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~ 222 (529)
T PRK15134 148 KRLTDYP-----HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRK 222 (529)
T ss_pred HHHhhCC-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHH
Confidence 245555 459999999999999999999999999999999888777766665543 24566677888888999
Q ss_pred hcCeEEEEeCCEEEEecCHhHHH
Q 044321 374 LFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 374 l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
+||+|++|++|++++.|+++++.
T Consensus 223 ~~dri~~l~~G~i~~~g~~~~~~ 245 (529)
T PRK15134 223 LADRVAVMQNGRCVEQNRAATLF 245 (529)
T ss_pred hcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999988764
No 267
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.1e-32 Score=297.43 Aligned_cols=206 Identities=17% Similarity=0.198 Sum_probs=138.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEML 250 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~ 250 (521)
..+|+||||+|++|++++|+|||||||||||++|+|+++|+. +...+...+. ...+..+ +...+..+.+....
T Consensus 16 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~-G~i~~~~~~~--~~~~~~~---~~~~i~~~~q~~~~- 88 (490)
T PRK10938 16 TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLS-GERQSQFSHI--TRLSFEQ---LQKLVSDEWQRNNT- 88 (490)
T ss_pred eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC-ceEEECCccc--ccCCHHH---HHHHhceeccCcch-
Confidence 359999999999999999999999999999999999987753 2233322221 1111111 00011111111000
Q ss_pred HHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCc
Q 044321 251 AELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQ 330 (521)
Q Consensus 251 ~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~ 330 (521)
..+...... ......... . ...+....++.+++.+||.+..++.++ .|||||||||+||+||+.+|+
T Consensus 89 ~~~~~~~~~----~~~~~~~~~---~-~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~ 155 (490)
T PRK10938 89 DMLSPGEDD----TGRTTAEII---Q-DEVKDPARCEQLAQQFGITALLDRRFK-----YLSTGETRKTLLCQALMSEPD 155 (490)
T ss_pred hhcccchhh----ccccHHHhc---c-cchhHHHHHHHHHHHcCCHhhhhCCcc-----cCCHHHHHHHHHHHHHHcCCC
Confidence 000000000 000000000 0 001123356778999999887777665 499999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 331 ALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 331 iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
+|||||||+++|....+.+.+++++. .+++||+++|+...+.++||+|++|++|++++.|+++++.
T Consensus 156 lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 156 LLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999988777777666543 2456666778888999999999999999999999988764
No 268
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-32 Score=291.78 Aligned_cols=194 Identities=26% Similarity=0.362 Sum_probs=158.1
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCcc
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDV 223 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~ 223 (521)
..+.++..++|+||||+|.+||+++|+|.||||||||+|+|+|.+.|+.+ +...|.|+-.
T Consensus 14 i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~ 93 (500)
T COG1129 14 ISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELS 93 (500)
T ss_pred ceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechh
Confidence 44556778899999999999999999999999999999999999988742 2267899999
Q ss_pred ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccc
Q 044321 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMV 303 (521)
Q Consensus 224 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 303 (521)
++|+|||.||+.++....... .+. + .......+..+|+.+|+....++.|
T Consensus 94 L~p~LsVaeNifLgre~~~~~---g~i----------------d-----------~~~m~~~A~~~l~~lg~~~~~~~~v 143 (500)
T COG1129 94 LVPNLSVAENIFLGREPTRRF---GLI----------------D-----------RKAMRRRARELLARLGLDIDPDTLV 143 (500)
T ss_pred ccCCccHHHHhhcccccccCC---Ccc----------------C-----------HHHHHHHHHHHHHHcCCCCChhhhh
Confidence 999999999998875432100 000 0 0112335677899999965578888
Q ss_pred cCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 304 GDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 304 g~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
++ ||+||||.|+|||||..++++|||||||++++..-.+.|.++++++ ++..+|.++|.+++++++||+|.||
T Consensus 144 ~~-----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVl 218 (500)
T COG1129 144 GD-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVL 218 (500)
T ss_pred hh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEE
Confidence 76 9999999999999999999999999999988777666666666544 5777888889999999999999999
Q ss_pred eCCEEEEecCH
Q 044321 382 SNGHIVYQGPR 392 (521)
Q Consensus 382 ~~G~iv~~G~~ 392 (521)
.+|++|..++.
T Consensus 219 RDG~~v~~~~~ 229 (500)
T COG1129 219 RDGRVVGTRPT 229 (500)
T ss_pred eCCEEeeeccc
Confidence 99999988873
No 269
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=3.2e-32 Score=298.70 Aligned_cols=189 Identities=21% Similarity=0.252 Sum_probs=147.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC---------------------CceeeecCCc--cccCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL---------------------KNRCDISQHD--VHIGE 227 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~---------------------~~~~~v~q~d--~~~~~ 227 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+++... ...+|++|+. .+++.
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~ 378 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPR 378 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCc
Confidence 579999999999999999999999999999999999874210 0136888875 36778
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDE 306 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~ 306 (521)
+||.||+.++........ . ..+....+..+|+.+||. ...++.++
T Consensus 379 ~tv~e~l~~~~~~~~~~~--------~------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 424 (529)
T PRK15134 379 LNVLQIIEEGLRVHQPTL--------S------------------------AAQREQQVIAVMEEVGLDPETRHRYPA-- 424 (529)
T ss_pred ccHHHHHHHHHHhccccC--------C------------------------hHHHHHHHHHHHHHcCCCHHHHhcCCc--
Confidence 999999987643211000 0 001112456789999997 45666554
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+.+||+++|+...+.++||+|++|++
T Consensus 425 ---~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~ 501 (529)
T PRK15134 425 ---EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQ 501 (529)
T ss_pred ---cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 59999999999999999999999999999998887666666655432 245666778999999999999999999
Q ss_pred CEEEEecCHhHHH
Q 044321 384 GHIVYQGPREYVL 396 (521)
Q Consensus 384 G~iv~~G~~~~v~ 396 (521)
|++++.|+++++.
T Consensus 502 G~i~~~~~~~~~~ 514 (529)
T PRK15134 502 GEVVEQGDCERVF 514 (529)
T ss_pred CEEEEEcCHHHHh
Confidence 9999999988873
No 270
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-32 Score=295.44 Aligned_cols=185 Identities=27% Similarity=0.319 Sum_probs=146.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~lTV 230 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+..+++.+||
T Consensus 17 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv 96 (501)
T PRK11288 17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTV 96 (501)
T ss_pred EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCH
Confidence 4699999999999999999999999999999999999876421 13688898888888999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
.+|+.++......+. . + ..+....+..+++.+||.+..++.++ .
T Consensus 97 ~~~l~~~~~~~~~~~-------~-------------~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 140 (501)
T PRK11288 97 AENLYLGQLPHKGGI-------V-------------N-----------RRLLNYEAREQLEHLGVDIDPDTPLK-----Y 140 (501)
T ss_pred HHHHHhcccccccCC-------C-------------C-----------HHHHHHHHHHHHHHcCCCCCcCCchh-----h
Confidence 999988531100000 0 0 00112245678999999876666654 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+..++..+||+|++|++|+++.
T Consensus 141 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~ 220 (501)
T PRK11288 141 LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220 (501)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999998887777766665543 35567777888889999999999999999987
Q ss_pred ecC
Q 044321 389 QGP 391 (521)
Q Consensus 389 ~G~ 391 (521)
.++
T Consensus 221 ~~~ 223 (501)
T PRK11288 221 TFD 223 (501)
T ss_pred ecC
Confidence 765
No 271
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-31 Score=264.16 Aligned_cols=190 Identities=25% Similarity=0.304 Sum_probs=136.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~ 231 (521)
..+|+|+||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+..++ ..||.
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~ 92 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLF-NDTIG 92 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhh-cchHH
Confidence 3599999999999999999999999999999999999876532 136888876655 57999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGI 311 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~L 311 (521)
||+.+.... ... . .+.... .. ......+..+ +...++.+. ..++.|
T Consensus 93 ~nl~~~~~~--~~~-~----~~~~~~---------------~~---------~~l~~~~~~l--~~~~~~~~~-~~~~~L 138 (236)
T cd03253 93 YNIRYGRPD--ATD-E----EVIEAA---------------KA---------AQIHDKIMRF--PDGYDTIVG-ERGLKL 138 (236)
T ss_pred HHHhhcCCC--CCH-H----HHHHHH---------------HH---------cCcHHHHHhc--cccccchhh-cCCCcC
Confidence 999775211 000 0 000000 00 0012223333 212222222 234579
Q ss_pred ChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 312 SGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 312 SGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||||||+||+||+.+|++|||||||+++|....+.+.+++... .+++|++++|+...+. .||++++|++|++++.|
T Consensus 139 S~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~-~~d~~~~l~~g~i~~~~ 217 (236)
T cd03253 139 SGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIV-NADKIIVLKDGRIVERG 217 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEEeeC
Confidence 999999999999999999999999999999988887777776543 2455666677777775 49999999999999999
Q ss_pred CHhHHH
Q 044321 391 PREYVL 396 (521)
Q Consensus 391 ~~~~v~ 396 (521)
+.+++.
T Consensus 218 ~~~~~~ 223 (236)
T cd03253 218 THEELL 223 (236)
T ss_pred CHHHHh
Confidence 987764
No 272
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=6e-32 Score=325.75 Aligned_cols=191 Identities=23% Similarity=0.294 Sum_probs=160.3
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV~ 231 (521)
++.+|+||||.|.+||+++|+||||||||||+++|+|++.|+.+ ..+|++|++.+++.+||+
T Consensus 942 ~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~ 1021 (2272)
T TIGR01257 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVA 1021 (2272)
T ss_pred CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHH
Confidence 35799999999999999999999999999999999999887531 127899999999999999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGI 311 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~L 311 (521)
|++.|.++..+... .+.+..++.+|+.+||.+..++.++ .|
T Consensus 1022 E~L~f~~~lkg~~~----------------------------------~~~~~~v~~lL~~vgL~~~~~~~~~-----~L 1062 (2272)
T TIGR01257 1022 EHILFYAQLKGRSW----------------------------------EEAQLEMEAMLEDTGLHHKRNEEAQ-----DL 1062 (2272)
T ss_pred HHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCChh-----hC
Confidence 99999766543211 0112245678999999988887765 49
Q ss_pred ChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 312 SGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 312 SGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||||||+||+||+++|++|||||||+++|....+.+.+++++. .+.+||+++|+.+++..+||+|++|++|++++.|
T Consensus 1063 SGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~G 1142 (2272)
T TIGR01257 1063 SGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSG 1142 (2272)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999888777776666544 3556777788999999999999999999999999
Q ss_pred CHhHHHHHH
Q 044321 391 PREYVLEFF 399 (521)
Q Consensus 391 ~~~~v~~~f 399 (521)
+++.+...|
T Consensus 1143 s~~~Lk~~~ 1151 (2272)
T TIGR01257 1143 TPLFLKNCF 1151 (2272)
T ss_pred CHHHHHHhc
Confidence 999987655
No 273
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.3e-32 Score=260.13 Aligned_cols=169 Identities=22% Similarity=0.209 Sum_probs=133.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV~E 232 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..+++.+|+.|
T Consensus 14 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e 93 (204)
T PRK13538 14 RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALE 93 (204)
T ss_pred EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHH
Confidence 4699999999999999999999999999999999999887532 1257777777778899999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.+.....+. .....++.+++.+||.+..++.++ .||
T Consensus 94 ~l~~~~~~~~~-------------------------------------~~~~~~~~~l~~~gl~~~~~~~~~-----~LS 131 (204)
T PRK13538 94 NLRFYQRLHGP-------------------------------------GDDEALWEALAQVGLAGFEDVPVR-----QLS 131 (204)
T ss_pred HHHHHHHhcCc-------------------------------------cHHHHHHHHHHHcCCHHHhhCChh-----hcC
Confidence 99876432110 001235668899999877776654 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
|||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .++++++++|+...+....++++++
T Consensus 132 ~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 132 AGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999999999888777777766543 3455666777777777767777776
No 274
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=5.2e-32 Score=264.20 Aligned_cols=177 Identities=25% Similarity=0.253 Sum_probs=131.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~ 231 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|.+.|..+ ..+|++|+..++ ..||+
T Consensus 17 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~-~~tv~ 95 (221)
T cd03244 17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLF-SGTIR 95 (221)
T ss_pred cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccc-cchHH
Confidence 3599999999999999999999999999999999999877532 126788876655 46999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-------ccccccc
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-------CADTMVG 304 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-------~~dt~vg 304 (521)
||+.+.... ... .+..+++.+++.+ ..++..+
T Consensus 96 enl~~~~~~----~~~-------------------------------------~~~~~~~~~~l~~~~~~l~~~l~~~~~ 134 (221)
T cd03244 96 SNLDPFGEY----SDE-------------------------------------ELWQALERVGLKEFVESLPGGLDTVVE 134 (221)
T ss_pred HHhCcCCCC----CHH-------------------------------------HHHHHHHHhCcHHHHHhcccccccccc
Confidence 988643110 000 0111122222221 1222222
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
..+..|||||||||+|||||+.+|++|||||||+++|....+.+.+++.+. .++++++++|+..++. .||++++|++
T Consensus 135 -~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~i~~l~~ 212 (221)
T cd03244 135 -EGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTII-DSDRILVLDK 212 (221)
T ss_pred -cCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-hCCEEEEEEC
Confidence 245679999999999999999999999999999999988888877777653 2456666777777775 4999999999
Q ss_pred CEEEEecC
Q 044321 384 GHIVYQGP 391 (521)
Q Consensus 384 G~iv~~G~ 391 (521)
|++++.|+
T Consensus 213 g~~~~~~~ 220 (221)
T cd03244 213 GRVVEFDS 220 (221)
T ss_pred CeEEecCC
Confidence 99998876
No 275
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-31 Score=294.19 Aligned_cols=212 Identities=17% Similarity=0.246 Sum_probs=154.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------ceeeecCCccccCCCCHHHHHHHHHH-hc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------NRCDISQHDVHIGEMTVRETLAFSAR-CQ 241 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------~~~~v~q~d~~~~~lTV~E~l~f~~~-~~ 241 (521)
+++|+|+||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+...++.+||.|++.++.. ..
T Consensus 14 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 93 (530)
T PRK15064 14 KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELW 93 (530)
T ss_pred cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHHH
Confidence 4699999999999999999999999999999999999887532 13788998888889999999987531 00
Q ss_pred cCchhhHHHHHHHHHHHhcCCC---CCCC--hHHHH-HHHhhhchhhhhHHHHHHHHcCCCccc-cccccCccCCCCChH
Q 044321 242 GVGSRYEMLAELTRREKAAGIK---PDPD--IDVFM-KAAATEGQEVSVITDYILKILGLDVCA-DTMVGDEILRGISGG 314 (521)
Q Consensus 242 ~~~~~~~~~~~l~~~e~~~~i~---~~~~--~~~~~-~~~~~~~~~~~~~~~~iL~~lgL~~~~-dt~vg~~~~r~LSGG 314 (521)
.. . .......... .... ..... ......+.+....+..+|+.+||.+.. +..+ ..||||
T Consensus 94 ~~------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgG 159 (530)
T PRK15064 94 EV------K---QERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLM-----SEVAPG 159 (530)
T ss_pred HH------H---HHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCch-----hhcCHH
Confidence 00 0 0000000000 0000 00000 000111122234567899999997643 3344 459999
Q ss_pred HHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEE-EEecCHh
Q 044321 315 QRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHI-VYQGPRE 393 (521)
Q Consensus 315 qrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~i-v~~G~~~ 393 (521)
|||||+||++|+.+|++|||||||+++|......+.+++.+. +.+||+++|+...+.++||+|++|++|++ ++.|+++
T Consensus 160 q~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~ 238 (530)
T PRK15064 160 WKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNER-NSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYD 238 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCHH
Confidence 999999999999999999999999999999999999988754 45566677888889999999999999999 5899988
Q ss_pred HHHH
Q 044321 394 YVLE 397 (521)
Q Consensus 394 ~v~~ 397 (521)
++++
T Consensus 239 ~~~~ 242 (530)
T PRK15064 239 EYMT 242 (530)
T ss_pred HHHH
Confidence 7653
No 276
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.5e-33 Score=258.17 Aligned_cols=195 Identities=27% Similarity=0.347 Sum_probs=158.6
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCce-------------------eeecCCccc
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNR-------------------CDISQHDVH 224 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~-------------------~~v~q~d~~ 224 (521)
..+.++.+.||+|||+.|++|.+|+|+|||||||||||.+++.+++.+.+.. ..+-|....
T Consensus 7 v~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i 86 (252)
T COG4604 7 VSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHI 86 (252)
T ss_pred hhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchh
Confidence 3455677889999999999999999999999999999999999887653211 233455555
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
...+||+|-+.|+.-...-+. + ..+.+..++..++.|+|.+..|.++.
T Consensus 87 ~~rlTV~dLv~FGRfPYSqGR-------l-------------------------t~eD~~~I~~aieyl~L~~l~dryLd 134 (252)
T COG4604 87 NSRLTVRDLVGFGRFPYSQGR-------L-------------------------TKEDRRIINEAIEYLHLEDLSDRYLD 134 (252)
T ss_pred hheeEHHHHhhcCCCcccCCC-------C-------------------------chHHHHHHHHHHHHhcccchHHHhHH
Confidence 668999999999742211110 0 11234467888999999998887765
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhH----HHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEE
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTT----FQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~----~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
+||||||||.-||..|+.+.+.++||||.+.+| .++++.|+++++++++|+++++ |+...+..++|+|+-
T Consensus 135 -----~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVl-HDINfAS~YsD~IVA 208 (252)
T COG4604 135 -----ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVL-HDINFASCYSDHIVA 208 (252)
T ss_pred -----hcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEE-ecccHHHhhhhheee
Confidence 599999999999999999999999999999655 5799999999999988888765 677889999999999
Q ss_pred EeCCEEEEecCHhHHH
Q 044321 381 ISNGHIVYQGPREYVL 396 (521)
Q Consensus 381 L~~G~iv~~G~~~~v~ 396 (521)
|.+|+++.+|+++++.
T Consensus 209 lK~G~vv~~G~~~eii 224 (252)
T COG4604 209 LKNGKVVKQGSPDEII 224 (252)
T ss_pred ecCCEEEecCCHHHhc
Confidence 9999999999999985
No 277
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-31 Score=255.46 Aligned_cols=152 Identities=36% Similarity=0.585 Sum_probs=120.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC--CCCC---------------ceeeecCCccccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD--SSLK---------------NRCDISQHDVHIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~--~~~~---------------~~~~v~q~d~~~~~lTV~E~ 233 (521)
+.+|+|+||+|++|++++|+|||||||||||++|+|++. +..+ ..+|++|++.+++.+|++||
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 99 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREA 99 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHH
Confidence 469999999999999999999999999999999999753 3211 12566776666777788777
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+.+... ++ .|||
T Consensus 100 l~~~~~--------------------------------------------------~~------------------~LSg 111 (192)
T cd03232 100 LRFSAL--------------------------------------------------LR------------------GLSV 111 (192)
T ss_pred HHHHHH--------------------------------------------------Hh------------------cCCH
Confidence 765310 00 4999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChh-HHHhhcCeEEEEeC-CEEEEe
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAP-ETYDLFDDIILISN-GHIVYQ 389 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~-~~~~l~D~VivL~~-G~iv~~ 389 (521)
||+|||+||+||+.+|++|||||||+++|......+.+++.+. .++++++++|+.+ ++.+.||+|++|++ |++++.
T Consensus 112 Ge~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~ 191 (192)
T cd03232 112 EQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYF 191 (192)
T ss_pred HHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeC
Confidence 9999999999999999999999999998887777766665443 2455566667666 47889999999999 999987
Q ss_pred c
Q 044321 390 G 390 (521)
Q Consensus 390 G 390 (521)
|
T Consensus 192 g 192 (192)
T cd03232 192 G 192 (192)
T ss_pred C
Confidence 6
No 278
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.4e-33 Score=270.79 Aligned_cols=175 Identities=26% Similarity=0.367 Sum_probs=148.0
Q ss_pred eeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCccccCCCCHHH
Q 044321 176 DVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 176 dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~~~~~lTV~E 232 (521)
+++|.++.-.+|||.|+||||||||+|+|+|+..|+.+ ..+||+|+-.+||++||+.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 68888888689999999999999999999999988632 1299999999999999999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
||.|+..... ....+.+...+|+.|..+.++. .||
T Consensus 96 NL~YG~~~~~----------------------------------------~~~fd~iv~lLGI~hLL~R~P~-----~LS 130 (352)
T COG4148 96 NLRYGMWKSM----------------------------------------RAQFDQLVALLGIEHLLDRYPG-----TLS 130 (352)
T ss_pred chhhhhcccc----------------------------------------hHhHHHHHHHhCcHHHHhhCCC-----ccC
Confidence 9999853210 0123668889999999987665 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHH----HHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTF----QIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~----~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
|||||||+|||||+..|++|+||||.+++|. +++-.|..+.++.+ .-|+.++|...|+.+++|+|++|++|++..
T Consensus 131 GGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~-IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A 209 (352)
T COG4148 131 GGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEIN-IPILYVSHSLDEVLRLADRVVVLENGKVKA 209 (352)
T ss_pred cchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcC-CCEEEEecCHHHHHhhhheEEEecCCeEEe
Confidence 9999999999999999999999999998775 56666666665544 456667788999999999999999999999
Q ss_pred ecCHhHHH
Q 044321 389 QGPREYVL 396 (521)
Q Consensus 389 ~G~~~~v~ 396 (521)
.|+.+++.
T Consensus 210 ~g~~e~v~ 217 (352)
T COG4148 210 SGPLEEVW 217 (352)
T ss_pred cCcHHHHh
Confidence 99999985
No 279
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=3e-31 Score=292.44 Aligned_cols=213 Identities=23% Similarity=0.254 Sum_probs=155.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------ceeeecCCccccCCCCHHHHHHHHHHh-c
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------NRCDISQHDVHIGEMTVRETLAFSARC-Q 241 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------~~~~v~q~d~~~~~lTV~E~l~f~~~~-~ 241 (521)
+++|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+||.||+.++... .
T Consensus 18 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~ 97 (552)
T TIGR03719 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIK 97 (552)
T ss_pred CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHHH
Confidence 4699999999999999999999999999999999999887532 237999998888899999999875321 0
Q ss_pred cCchhhHHHHHHHHHHHhcCCCCCCCh-------HHHHHHH-hhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 242 GVGSRYEMLAELTRREKAAGIKPDPDI-------DVFMKAA-ATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 242 ~~~~~~~~~~~l~~~e~~~~i~~~~~~-------~~~~~~~-~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+. ...+........ .+..+. ..+.... ..........+..+++.+|+.. .++.++ .|||
T Consensus 98 ~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~-----~LSg 164 (552)
T TIGR03719 98 DA------LDRFNEISAKFA-EPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDADVT-----KLSG 164 (552)
T ss_pred HH------HHHHHHHHHHhc-cCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccCchh-----hcCH
Confidence 00 000000000000 000000 0000000 0111122345677888999954 455554 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEE-EecCH
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIV-YQGPR 392 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv-~~G~~ 392 (521)
||||||+||++|+.+|++|||||||+++|....+.|.+++...++ +||+++|+...+..+||+|++|++|+++ +.|+.
T Consensus 165 Gqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~-tvIiisHd~~~~~~~~d~v~~l~~g~i~~~~g~~ 243 (552)
T TIGR03719 165 GERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPG-TVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNY 243 (552)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCC-eEEEEeCCHHHHHhhcCeEEEEECCEEEEecCCH
Confidence 999999999999999999999999999999999999998877665 5666778888999999999999999976 78988
Q ss_pred hHHHH
Q 044321 393 EYVLE 397 (521)
Q Consensus 393 ~~v~~ 397 (521)
+++.+
T Consensus 244 ~~~~~ 248 (552)
T TIGR03719 244 SSWLE 248 (552)
T ss_pred HHHHH
Confidence 87543
No 280
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.5e-31 Score=267.49 Aligned_cols=188 Identities=24% Similarity=0.301 Sum_probs=135.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~ 231 (521)
..+|+||||+|++|++++|+|+||||||||+++|+|+++|..+ ..+|++|+..+++ .|++
T Consensus 34 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~-~tv~ 112 (257)
T cd03288 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFS-GSIR 112 (257)
T ss_pred CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccc-cHHH
Confidence 3599999999999999999999999999999999999876522 1267777765554 5888
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHc--CCCccccccccCccCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKIL--GLDVCADTMVGDEILR 309 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~~~r 309 (521)
+|+.+.... ... . ...+.. .......++.+ |++. .++ ..+.
T Consensus 113 ~nl~~~~~~----~~~----~------------------~~~~l~------~~~l~~~~~~~~~~l~~----~~~-~~~~ 155 (257)
T cd03288 113 FNLDPECKC----TDD----R------------------LWEALE------IAQLKNMVKSLPGGLDA----VVT-EGGE 155 (257)
T ss_pred HhcCcCCCC----CHH----H------------------HHHHHH------HhCcHHHHhhcccccCc----Eec-cCCC
Confidence 876432100 000 0 000000 00112234443 4443 332 2456
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
.||||||||++|||||+.+|++|||||||+++|....+.+.+++... .+.++|+++|+...+.. ||+|++|++|++++
T Consensus 156 ~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~dri~~l~~G~i~~ 234 (257)
T cd03288 156 NFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD-ADLVLVLSRGILVE 234 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh-CCEEEEEECCEEEE
Confidence 79999999999999999999999999999999988887777766543 34556666777777765 99999999999999
Q ss_pred ecCHhHHHH
Q 044321 389 QGPREYVLE 397 (521)
Q Consensus 389 ~G~~~~v~~ 397 (521)
.|+++++.+
T Consensus 235 ~g~~~~~~~ 243 (257)
T cd03288 235 CDTPENLLA 243 (257)
T ss_pred eCCHHHHHh
Confidence 999887743
No 281
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=6.3e-32 Score=294.93 Aligned_cols=192 Identities=18% Similarity=0.233 Sum_probs=147.4
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-CCC--------------------ceeeecCCc---ccc
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-SLK--------------------NRCDISQHD---VHI 225 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-~~~--------------------~~~~v~q~d---~~~ 225 (521)
++.+|+||||+|++|++++|+||||||||||+++|+|+++| +.+ ..+|++|+. ..+
T Consensus 274 ~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 353 (506)
T PRK13549 274 HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIV 353 (506)
T ss_pred ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCc
Confidence 35699999999999999999999999999999999999873 310 136788874 367
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-cccccccc
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVG 304 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg 304 (521)
+.+||.||+.+......... +. .+ ..+....++.+++.+||. +..++.++
T Consensus 354 ~~~tv~e~l~~~~~~~~~~~---------------~~---~~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 404 (506)
T PRK13549 354 PVMGVGKNITLAALDRFTGG---------------SR---ID-----------DAAELKTILESIQRLKVKTASPELAIA 404 (506)
T ss_pred CCCCHHHHhhhhhhhhhccC---------------cc---cC-----------hHHHHHHHHHHHHhcCccCCCcccccc
Confidence 78999999987531000000 00 00 001112456789999996 56676665
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++..+ .+++||+++|+..++.++||++++|+
T Consensus 405 -----~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~ 479 (506)
T PRK13549 405 -----RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMH 479 (506)
T ss_pred -----cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEE
Confidence 59999999999999999999999999999998887777766665432 35667778899999999999999999
Q ss_pred CCEEEEecCHhHH
Q 044321 383 NGHIVYQGPREYV 395 (521)
Q Consensus 383 ~G~iv~~G~~~~v 395 (521)
+|+++..|+++++
T Consensus 480 ~G~i~~~~~~~~~ 492 (506)
T PRK13549 480 EGKLKGDLINHNL 492 (506)
T ss_pred CCEEEEEeccccC
Confidence 9999999987664
No 282
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.98 E-value=2.5e-31 Score=260.11 Aligned_cols=173 Identities=22% Similarity=0.226 Sum_probs=133.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------------------ceeeecCCcc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------------------NRCDISQHDV 223 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------------------~~~~v~q~d~ 223 (521)
..+|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 100 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLR 100 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccc
Confidence 4699999999999999999999999999999999999876411 1257788777
Q ss_pred ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcc-cccc
Q 044321 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVC-ADTM 302 (521)
Q Consensus 224 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~-~dt~ 302 (521)
+++.+||.|++.+.....+... .+....+..+++.+||.+. .+..
T Consensus 101 ~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 146 (224)
T TIGR02324 101 VIPRVSALEVVAEPLLERGVPR----------------------------------EAARARARELLARLNIPERLWHLP 146 (224)
T ss_pred cCCCccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhhCC
Confidence 7888899999877533211100 0011234567888999753 3544
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEE
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
+ ..||||||||++||+||+.+|++|||||||+++|....+.+.+++.+. .++++++++|+...+..+||+++.
T Consensus 147 ~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~ 221 (224)
T TIGR02324 147 P-----ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMD 221 (224)
T ss_pred c-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEe
Confidence 4 469999999999999999999999999999998888777777666543 245666677887778889999987
Q ss_pred Ee
Q 044321 381 IS 382 (521)
Q Consensus 381 L~ 382 (521)
+.
T Consensus 222 ~~ 223 (224)
T TIGR02324 222 VT 223 (224)
T ss_pred cC
Confidence 63
No 283
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.98 E-value=2.1e-31 Score=321.67 Aligned_cols=240 Identities=18% Similarity=0.205 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCC--CCC-ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhh
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGI--SLP-TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNS 160 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~--~~~-~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~ 160 (521)
.+....+++|+.++++.++|... ..+.... ..| ..+|+|+|+++.|..
T Consensus 1246 ~e~~~~s~eRi~~~~~~~~e~~~-----~~~~~~~~~~wp~~g~I~f~nVsf~Y~~------------------------ 1296 (1522)
T TIGR00957 1246 METNIVAVERLKEYSETEKEAPW-----QIQETAPPSGWPPRGRVEFRNYCLRYRE------------------------ 1296 (1522)
T ss_pred HHHHHHHHHHHHHHhcCCCCccc-----cccCCCCCCCCCCCCcEEEEEEEEEeCC------------------------
Confidence 56777889999999876655210 0000001 112 357999999999731
Q ss_pred cccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCC
Q 044321 161 LNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQH 221 (521)
Q Consensus 161 ~~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~ 221 (521)
+...+|+||||+|+|||.+||+|++|||||||+++|.|+++|+.+ ..++|+|+
T Consensus 1297 --------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQd 1368 (1522)
T TIGR00957 1297 --------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQD 1368 (1522)
T ss_pred --------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCC
Confidence 112599999999999999999999999999999999999988632 12789998
Q ss_pred ccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccc
Q 044321 222 DVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADT 301 (521)
Q Consensus 222 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 301 (521)
+.+|. .|+++||..... . +.+...++....+ ..+.+ . .+++.+||
T Consensus 1369 p~LF~-gTIr~NLdp~~~----~----------------------sdeei~~al~~a~-----l~~~I-~--~lp~GLdt 1413 (1522)
T TIGR00957 1369 PVLFS-GSLRMNLDPFSQ----Y----------------------SDEEVWWALELAH-----LKTFV-S--ALPDKLDH 1413 (1522)
T ss_pred CcccC-ccHHHHcCcccC----C----------------------CHHHHHHHHHHcC-----cHHHH-h--hCccCCCc
Confidence 87765 699999973210 0 1111111111110 11111 1 35677899
Q ss_pred cccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEE
Q 044321 302 MVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 302 ~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
.||+ .+..||||||||++|||||+++|+||+|||||+++|.+.-+.+.+.+++. .+.|+|+++|.. .+...||+|++
T Consensus 1414 ~v~e-~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl-~ti~~~DrIlV 1491 (1522)
T TIGR00957 1414 ECAE-GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRL-NTIMDYTRVIV 1491 (1522)
T ss_pred eecC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCH-HHHHhCCEEEE
Confidence 9986 45679999999999999999999999999999988887777776666543 344455555655 45567999999
Q ss_pred EeCCEEEEecCHhHHHH
Q 044321 381 ISNGHIVYQGPREYVLE 397 (521)
Q Consensus 381 L~~G~iv~~G~~~~v~~ 397 (521)
|++|+|++.|+++++++
T Consensus 1492 ld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1492 LDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred EECCEEEEECCHHHHHh
Confidence 99999999999999864
No 284
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.98 E-value=5.2e-31 Score=267.04 Aligned_cols=188 Identities=21% Similarity=0.258 Sum_probs=135.4
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------ceeeecCCccccCCCCHHHHHHHHHHhccCch
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------NRCDISQHDVHIGEMTVRETLAFSARCQGVGS 245 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~ 245 (521)
.+|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+...++ .||+||+.+..... .
T Consensus 51 ~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~-~tv~enl~~~~~~~---~ 126 (282)
T cd03291 51 PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMP-GTIKENIIFGVSYD---E 126 (282)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccc-cCHHHHhhcccccC---H
Confidence 489999999999999999999999999999999999887643 1478999876665 59999998742110 0
Q ss_pred hhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHH
Q 044321 246 RYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEML 325 (521)
Q Consensus 246 ~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraL 325 (521)
. ..... .... .....++.+ ....++.++ ..+..|||||||||+||++|
T Consensus 127 -~----~~~~~---------------l~~~---------~l~~~l~~~--~~~~~~~~~-~~~~~LSgGq~qrv~lAraL 174 (282)
T cd03291 127 -Y----RYKSV---------------VKAC---------QLEEDITKF--PEKDNTVLG-EGGITLSGGQRARISLARAV 174 (282)
T ss_pred -H----HHHHH---------------HHHh---------CCHHHHHhc--cccccceec-CCCCcCCHHHHHHHHHHHHH
Confidence 0 00000 0000 001122222 222333333 24567999999999999999
Q ss_pred cCCCcEEEEeCCChhhHHHHHHHHHHH-HHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 326 VGPAQALFMDEISNSTTFQIVNSLRQF-IHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 326 v~~P~iLlLDEPTs~~~~~i~~~L~~l-~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
+.+|++|||||||+++|....+.+.+. +... .+.+|++++|+...+ ..||++++|++|++++.|+++++.
T Consensus 175 ~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~-~~~d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 175 YKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHL-KKADKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999998877766543 2221 245556667777666 589999999999999999988874
No 285
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=1.6e-31 Score=293.40 Aligned_cols=183 Identities=23% Similarity=0.281 Sum_probs=149.0
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------ceeeecCCcc--ccCCCCHHHHHHHHH
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------NRCDISQHDV--HIGEMTVRETLAFSA 238 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------~~~~v~q~d~--~~~~lTV~E~l~f~~ 238 (521)
+.+.+|+|+||+|++|++++|+|||||||||||++|+|++.|+.+ ..+|++|+.. +++.+|+.+++.+..
T Consensus 330 ~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~ 409 (530)
T PRK15064 330 DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWR 409 (530)
T ss_pred CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhc
Confidence 345799999999999999999999999999999999999877632 2378999753 445789999875421
Q ss_pred HhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCccCCCCChHHHH
Q 044321 239 RCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDEILRGISGGQRK 317 (521)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~~r~LSGGqrQ 317 (521)
. . . .....++.+|+.+|+. +..++.++ .|||||||
T Consensus 410 ~---~-~-----------------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~q 445 (530)
T PRK15064 410 Q---E-G-----------------------------------DDEQAVRGTLGRLLFSQDDIKKSVK-----VLSGGEKG 445 (530)
T ss_pred c---C-C-----------------------------------ccHHHHHHHHHHcCCChhHhcCccc-----ccCHHHHH
Confidence 0 0 0 0012345688899994 56666665 59999999
Q ss_pred HHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEE-EecCHhHHH
Q 044321 318 RVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIV-YQGPREYVL 396 (521)
Q Consensus 318 RvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv-~~G~~~~v~ 396 (521)
||+||++|+.+|++|||||||+++|....+.+.+++...++ +||+++|+.+.+..+||+|++|++|+++ +.|++++++
T Consensus 446 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 446 RMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEG-TLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 99999999999999999999999999999999998887765 5666778888999999999999999998 889887764
No 286
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.98 E-value=2.3e-31 Score=255.33 Aligned_cols=152 Identities=38% Similarity=0.610 Sum_probs=120.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC--CCCCC----------------ceeeecCCccccCCCCHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL--DSSLK----------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l--~~~~~----------------~~~~v~q~d~~~~~lTV~E 232 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|++ +|..+ ..+|++|+...++.+|++|
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 101 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRE 101 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHH
Confidence 46999999999999999999999999999999999998 66421 1256666666666677777
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.+... + ..||
T Consensus 102 ~i~~~~~-------------------------------------------------------~-------------~~LS 113 (194)
T cd03213 102 TLMFAAK-------------------------------------------------------L-------------RGLS 113 (194)
T ss_pred HHHHHHH-------------------------------------------------------h-------------ccCC
Confidence 6654210 0 0499
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChh-HHHhhcCeEEEEeCCEEEEe
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAP-ETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~-~~~~l~D~VivL~~G~iv~~ 389 (521)
|||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .++++++++|+.. ++.++||++++|++|++++.
T Consensus 114 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~ 193 (194)
T cd03213 114 GGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYF 193 (194)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEec
Confidence 99999999999999999999999999998887777776666543 2445555666664 68889999999999999876
Q ss_pred c
Q 044321 390 G 390 (521)
Q Consensus 390 G 390 (521)
|
T Consensus 194 ~ 194 (194)
T cd03213 194 G 194 (194)
T ss_pred C
Confidence 5
No 287
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.98 E-value=1.3e-31 Score=260.73 Aligned_cols=171 Identities=21% Similarity=0.264 Sum_probs=137.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------ceeeecCCccccCCCCHHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------NRCDISQHDVHIGEMTVRETL 234 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------~~~~v~q~d~~~~~lTV~E~l 234 (521)
+.+|+++||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|.+.+++.+|+.||+
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l 103 (214)
T PRK13543 24 EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENL 103 (214)
T ss_pred ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHH
Confidence 3699999999999999999999999999999999999877531 136888887777888999998
Q ss_pred HHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChH
Q 044321 235 AFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGG 314 (521)
Q Consensus 235 ~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGG 314 (521)
.+.....+. .....+..+++.+||.+..++.++ .||||
T Consensus 104 ~~~~~~~~~-------------------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 141 (214)
T PRK13543 104 HFLCGLHGR-------------------------------------RAKQMPGSALAIVGLAGYEDTLVR-----QLSAG 141 (214)
T ss_pred HHHHHhcCC-------------------------------------cHHHHHHHHHHHcCChhhccCChh-----hCCHH
Confidence 875322110 001123557888999877777665 59999
Q ss_pred HHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 315 QRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 315 qrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
|||||+||++++.+|++|||||||+++|....+.+.+++.+. .+.++|+++|+..++.++||++++|+.
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 142 QKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999999988877777766533 345666778888899999999999863
No 288
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.98 E-value=1.5e-31 Score=257.87 Aligned_cols=166 Identities=20% Similarity=0.180 Sum_probs=132.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV~E 232 (521)
+.+|+|+||+|++|++++|+|+||||||||+++|+|+++|..+ ..+|++|+..+++.+|++|
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 92 (201)
T cd03231 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLE 92 (201)
T ss_pred ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHH
Confidence 4699999999999999999999999999999999999876521 1267777777777889999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.+..... ....++.+++.+||.+..++.+. .||
T Consensus 93 ~l~~~~~~~----------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS 127 (201)
T cd03231 93 NLRFWHADH----------------------------------------SDEQVEEALARVGLNGFEDRPVA-----QLS 127 (201)
T ss_pred HHHhhcccc----------------------------------------cHHHHHHHHHHcCChhhhcCchh-----hCC
Confidence 887642100 01134668888999877776654 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
||||||++||+||+.+|++|||||||+++|....+.+.+++.+. .+.++|+++|+..+....|++++++
T Consensus 128 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 128 AGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999999999999888777777766543 2445555667667788899999887
No 289
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.98 E-value=1.4e-31 Score=293.55 Aligned_cols=212 Identities=23% Similarity=0.270 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
.++...+.+|+.++++.+++.-. .+............+|+|+||+|.|.
T Consensus 297 ~~~~~~~~~ri~~~l~~~~~~~~---~~~~~~~~~~~~~~~I~~~~vsf~Y~---------------------------- 345 (529)
T TIGR02868 297 LTRVRAAAERIEEVTGAKGPRPE---GVVPAAGALGLGKPTLELRDLSFGYP---------------------------- 345 (529)
T ss_pred HHHHHHHHHHHHHHhcCCCCcCC---CCCCCCcccCCCCceEEEEEEEEecC----------------------------
Confidence 56677888999888876654100 00000000111124699999999862
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCcccc
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHI 225 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~ 225 (521)
.+..+|+|+||+|++|+.++|+||||||||||+++|+|+++|+.+ ..+||+|++.+|
T Consensus 346 -----~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF 420 (529)
T TIGR02868 346 -----GSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLF 420 (529)
T ss_pred -----CCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccc
Confidence 112499999999999999999999999999999999999988632 237899987655
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccC
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGD 305 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 305 (521)
+.|++|||.++.. +.+.+.+.++....+ ..+.+ -.|++.+||.+|+
T Consensus 421 -~~TI~eNI~~g~~-------------------------~~~~e~i~~al~~a~-----l~~~i---~~lp~GldT~ige 466 (529)
T TIGR02868 421 -DTTVRDNLRLGRP-------------------------DATDEELWAALERVG-----LADWL---RSLPDGLDTVLGE 466 (529)
T ss_pred -cccHHHHHhccCC-------------------------CCCHHHHHHHHHHcC-----CHHHH---HhCcccccchhcc
Confidence 6799999998621 111122222221111 11121 2377889999997
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEec
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQ 366 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h 366 (521)
....||||||||++|||||+.+|++|+|||||+++|.+..+.+.+.+... +.|+|+++|+
T Consensus 467 -~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHr 528 (529)
T TIGR02868 467 -GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHH 528 (529)
T ss_pred -ccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 45679999999999999999999999999999999888887777766544 3455555543
No 290
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=6.5e-32 Score=252.20 Aligned_cols=197 Identities=22% Similarity=0.302 Sum_probs=155.8
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------------ceeeecCCccccCC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------------NRCDISQHDVHIGE 227 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------------~~~~v~q~d~~~~~ 227 (521)
+...+|+|+||+|.|||+-+|+|||||||||+|.+|+|..+|..+ +.+--+|.+..|..
T Consensus 16 ~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ 95 (249)
T COG4674 16 GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFEN 95 (249)
T ss_pred cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhh
Confidence 446799999999999999999999999999999999999887621 11334677888999
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCcc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI 307 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 307 (521)
+||+|||..+.+... ..+..+..+. ..+.+.+++++|...||.+.++...+.
T Consensus 96 ltV~eNLelA~~~~k-----~v~a~L~~r~---------------------~~~e~~ride~La~igL~~~~~~~A~~-- 147 (249)
T COG4674 96 LTVRENLELALNRDK-----SVFASLFARL---------------------RAEERRRIDELLATIGLGDERDRLAAL-- 147 (249)
T ss_pred ccHHHHHHHHhcCCc-----chHHHhhhhc---------------------ChhHHHHHHHHHHHcccchhhhhhhhh--
Confidence 999999998754321 1122221111 112345789999999999999888775
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
||.||||++.|+..|+++|++|++|||+++++.+-....-++++.+ ++..|+++.|++..+..++++|.+|++|.+
T Consensus 148 ---LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~V 224 (249)
T COG4674 148 ---LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSV 224 (249)
T ss_pred ---hccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccce
Confidence 9999999999999999999999999999976554444333333332 466788889999999999999999999999
Q ss_pred EEecCHhHHH
Q 044321 387 VYQGPREYVL 396 (521)
Q Consensus 387 v~~G~~~~v~ 396 (521)
...|+.+++.
T Consensus 225 L~EGsld~v~ 234 (249)
T COG4674 225 LAEGSLDEVQ 234 (249)
T ss_pred eecccHHHhh
Confidence 9999998874
No 291
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.98 E-value=3.6e-31 Score=255.15 Aligned_cols=181 Identities=21% Similarity=0.254 Sum_probs=120.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC--CCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL--DSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYE 248 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l--~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~ 248 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|.. .|. .+..++...+. ......+.. ...+..+++...
T Consensus 13 ~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~-~G~i~~~g~~~--~~~~~~~~~--~~~i~~v~q~~~ 87 (200)
T cd03217 13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT-EGEILFKGEDI--TDLPPEERA--RLGIFLAFQYPP 87 (200)
T ss_pred EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC-ccEEEECCEEC--CcCCHHHHh--hCcEEEeecChh
Confidence 46999999999999999999999999999999999985 343 34445544322 111111100 000111111100
Q ss_pred HHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCC
Q 044321 249 MLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGP 328 (521)
Q Consensus 249 ~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~ 328 (521)
.+ +.. .+...++ .....|||||||||+||+||+.+
T Consensus 88 ~~-------------~~~------------------~~~~~l~--------------~~~~~LS~G~~qrv~laral~~~ 122 (200)
T cd03217 88 EI-------------PGV------------------KNADFLR--------------YVNEGFSGGEKKRNEILQLLLLE 122 (200)
T ss_pred hc-------------cCc------------------cHHHHHh--------------hccccCCHHHHHHHHHHHHHhcC
Confidence 00 000 0111111 11236999999999999999999
Q ss_pred CcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHh-hcCeEEEEeCCEEEEecCHhHHHHHHHHc
Q 044321 329 AQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYD-LFDDIILISNGHIVYQGPREYVLEFFKFM 402 (521)
Q Consensus 329 P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~-l~D~VivL~~G~iv~~G~~~~v~~~f~~~ 402 (521)
|++|||||||+++|....+.+.+++.+. .+.++++++|+...+.. +||++++|++|++++.|+.+ +.++|...
T Consensus 123 p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~~-~~~~~~~~ 198 (200)
T cd03217 123 PDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE-LALEIEKK 198 (200)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccHH-HHhhhccc
Confidence 9999999999998877776666655443 24556666777777777 79999999999999999555 55555433
No 292
>PTZ00243 ABC transporter; Provisional
Probab=99.98 E-value=4.8e-31 Score=318.35 Aligned_cols=189 Identities=20% Similarity=0.210 Sum_probs=142.9
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~E 232 (521)
.+|+||||+|+|||.+||+|++|||||||+++|.|+++|..+ ..++|+|++.+|. .||++
T Consensus 1324 ~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~-gTIre 1402 (1560)
T PTZ00243 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFD-GTVRQ 1402 (1560)
T ss_pred ceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCcccc-ccHHH
Confidence 599999999999999999999999999999999999988632 1289999887664 69999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
||..... .+.+.+..+....+ ..+.+ -.|++.+||.||+ .+..||
T Consensus 1403 NIdp~~~--------------------------~sdeeI~~Al~~a~-----l~~~I---~~lp~Gldt~vge-~G~nLS 1447 (1560)
T PTZ00243 1403 NVDPFLE--------------------------ASSAEVWAALELVG-----LRERV---ASESEGIDSRVLE-GGSNYS 1447 (1560)
T ss_pred HhCcccC--------------------------CCHHHHHHHHHHCC-----ChHHH---hhCcccccccccC-CcCcCC
Confidence 9964210 01111222221111 11111 1367788999986 556799
Q ss_pred hHHHHHHHHHHHHcCC-CcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 313 GGQRKRVTTGEMLVGP-AQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 313 GGqrQRvaIAraLv~~-P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||||++|||||+++ |+||||||||+++|.+.-+.+.+.+.+. ...|+|++.|.. .+...||+|++|++|+|++.|
T Consensus 1448 gGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl-~ti~~~DrIlVLd~G~VvE~G 1526 (1560)
T PTZ00243 1448 VGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRL-HTVAQYDKIIVMDHGAVAEMG 1526 (1560)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccH-HHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999995 8999999999988777777776665543 344455555655 566789999999999999999
Q ss_pred CHhHHHH
Q 044321 391 PREYVLE 397 (521)
Q Consensus 391 ~~~~v~~ 397 (521)
+++++++
T Consensus 1527 t~~eLl~ 1533 (1560)
T PTZ00243 1527 SPRELVM 1533 (1560)
T ss_pred CHHHHHh
Confidence 9999863
No 293
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.98 E-value=1.6e-31 Score=292.04 Aligned_cols=189 Identities=16% Similarity=0.257 Sum_probs=145.3
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCC---ccccCCC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQH---DVHIGEM 228 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~---d~~~~~l 228 (521)
.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+ ..+++.+
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 356 (510)
T PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNF 356 (510)
T ss_pred CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCC
Confidence 489999999999999999999999999999999999876421 12788887 3567889
Q ss_pred CHHHHHHHHHHhc--cCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccC
Q 044321 229 TVRETLAFSARCQ--GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGD 305 (521)
Q Consensus 229 TV~E~l~f~~~~~--~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~ 305 (521)
||.||+.+..... +....+ +.. . .......++.+++.+||. +..++.++
T Consensus 357 tv~e~l~~~~~~~~~~~~~~~-------------~~~---~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~~- 408 (510)
T PRK09700 357 SIAQNMAISRSLKDGGYKGAM-------------GLF---H-----------EVDEQRTAENQRELLALKCHSVNQNIT- 408 (510)
T ss_pred cHHHHhccccccccccccccc-------------ccc---C-----------hHHHHHHHHHHHHhcCCCCCCccCccc-
Confidence 9999998753211 000000 000 0 000112356789999996 67777766
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.++++.. .+.+||+++|+...+..+||++++|++
T Consensus 409 ----~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~ 484 (510)
T PRK09700 409 ----ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCE 484 (510)
T ss_pred ----cCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEEC
Confidence 49999999999999999999999999999998888777776666432 345677778888899999999999999
Q ss_pred CEEEEecCH
Q 044321 384 GHIVYQGPR 392 (521)
Q Consensus 384 G~iv~~G~~ 392 (521)
|++++.++.
T Consensus 485 G~i~~~~~~ 493 (510)
T PRK09700 485 GRLTQILTN 493 (510)
T ss_pred CEEEEEecC
Confidence 999988865
No 294
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.97 E-value=2.1e-31 Score=260.86 Aligned_cols=177 Identities=21% Similarity=0.330 Sum_probs=131.4
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~E 232 (521)
.+|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..+++ .||.|
T Consensus 28 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~ 106 (226)
T cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQD 106 (226)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHh-hhHHH
Confidence 599999999999999999999999999999999999876532 1267777765554 68888
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHc--CCCccccccccCccCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKIL--GLDVCADTMVGDEILRG 310 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~~~r~ 310 (521)
|+.+...... . ..+.... ....+..+++.+ |+....+..+ ..
T Consensus 107 nl~~~~~~~~----~---~~~~~~~------------------------~~~~~~~~l~~l~~gl~~~~~~~~-----~~ 150 (226)
T cd03248 107 NIAYGLQSCS----F---ECVKEAA------------------------QKAHAHSFISELASGYDTEVGEKG-----SQ 150 (226)
T ss_pred HhccccCCCC----H---HHHHHHH------------------------HHcCcHHHHHhccccccchhhcCC-----Cc
Confidence 8876432100 0 0000000 001234567777 6765555444 56
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
|||||||||+||++|+.+|++|||||||+++|....+.+.+++.+. +.+++++++|+..++. .||+|++|++|++
T Consensus 151 LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 151 LSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVE-RADQILVLDGGRI 226 (226)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEecCCcC
Confidence 9999999999999999999999999999999988888877776553 3356666677777775 5999999999974
No 295
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.97 E-value=5.4e-31 Score=315.83 Aligned_cols=260 Identities=18% Similarity=0.237 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCc-eeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPT-IEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLN 162 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~ 162 (521)
.+.+..+.+|++++++.+++. .. ...+..++. .+|+|+||++.+..
T Consensus 348 ~~~a~~a~~ri~~ii~~~~~~-----~~--~~~~~~~~~~~~I~~~nVsf~Y~~-------------------------- 394 (1466)
T PTZ00265 348 YMKSLEATNSLYEIINRKPLV-----EN--NDDGKKLKDIKKIQFKNVRFHYDT-------------------------- 394 (1466)
T ss_pred HHHHHHHHHHHHHHHcCCCCC-----CC--CCCCccCCCCCcEEEEEEEEEcCC--------------------------
Confidence 566788889999999877651 11 111222222 27999999998621
Q ss_pred cccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCc
Q 044321 163 ILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHD 222 (521)
Q Consensus 163 ~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d 222 (521)
....++|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+||+|++
T Consensus 395 -----~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~ 469 (1466)
T PTZ00265 395 -----RKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDP 469 (1466)
T ss_pred -----CCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccc
Confidence 1123699999999999999999999999999999999999987531 127899987
Q ss_pred cccCCCCHHHHHHHHHHhc-cC---chhhHHH----HHH-----HHHHH----hcCCCCCCChHHHHHHHhhhchhhhhH
Q 044321 223 VHIGEMTVRETLAFSARCQ-GV---GSRYEML----AEL-----TRREK----AAGIKPDPDIDVFMKAAATEGQEVSVI 285 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~-~~---~~~~~~~----~~l-----~~~e~----~~~i~~~~~~~~~~~~~~~~~~~~~~~ 285 (521)
.+|+ .|++||+.++.... .. ...+... .+. ...++ ...+....+...+.+............
T Consensus 470 ~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 548 (1466)
T PTZ00265 470 LLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSE 548 (1466)
T ss_pred cchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHH
Confidence 7775 69999999863110 00 0000000 000 00000 000000000000000000000000112
Q ss_pred HHHHHHHc-------CCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--
Q 044321 286 TDYILKIL-------GLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-- 356 (521)
Q Consensus 286 ~~~iL~~l-------gL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-- 356 (521)
+..+++.+ .|++.+||.+|+ .+..|||||||||+|||||+.+|+||||||||+++|......+.+.+.+.
T Consensus 549 v~~a~~~~~l~~~i~~lp~g~dT~vg~-~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~ 627 (1466)
T PTZ00265 549 VVDVSKKVLIHDFVSALPDKYETLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKG 627 (1466)
T ss_pred HHHHHHHhCcHHHHHhCccccCceeCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhh
Confidence 22333333 466778999986 46789999999999999999999999999999998887777776666544
Q ss_pred -CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 357 -EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 357 -~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
.+.++|+++|+...+ +.||+|++|++|
T Consensus 628 ~~g~TvIiIsHrls~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 628 NENRITIIIAHRLSTI-RYANTIFVLSNR 655 (1466)
T ss_pred cCCCEEEEEeCCHHHH-HhCCEEEEEeCC
Confidence 234555566666554 789999999986
No 296
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=6e-31 Score=254.81 Aligned_cols=168 Identities=24% Similarity=0.276 Sum_probs=129.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------ceeeecCCccccCCCCHHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------NRCDISQHDVHIGEMTVRETL 234 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------~~~~v~q~d~~~~~lTV~E~l 234 (521)
..+|+|+||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|++..++.+|+.||+
T Consensus 15 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l 94 (207)
T PRK13539 15 RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENL 94 (207)
T ss_pred eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHH
Confidence 4699999999999999999999999999999999999876521 125777777677788999998
Q ss_pred HHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChH
Q 044321 235 AFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGG 314 (521)
Q Consensus 235 ~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGG 314 (521)
.+.....+. ....+.++++.+||.+..+..++ .||||
T Consensus 95 ~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 131 (207)
T PRK13539 95 EFWAAFLGG--------------------------------------EELDIAAALEAVGLAPLAHLPFG-----YLSAG 131 (207)
T ss_pred HHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHcCChh-----hcCHH
Confidence 764322110 00124568889999876666554 59999
Q ss_pred HHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 315 QRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 315 qrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
||||++||+||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+..++.. |+++.+..
T Consensus 132 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~~~~~~ 200 (207)
T PRK13539 132 QKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARELDLGP 200 (207)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcEEeecC
Confidence 999999999999999999999999998887777766666543 34566666777777765 88887743
No 297
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.97 E-value=2.6e-31 Score=274.61 Aligned_cols=169 Identities=27% Similarity=0.335 Sum_probs=136.7
Q ss_pred EEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHH
Q 044321 189 LLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLA 251 (521)
Q Consensus 189 LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~ 251 (521)
|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+||.||+.|+.+..+...
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~------ 74 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPR------ 74 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCH------
Confidence 6899999999999999999877521 13789999888999999999998754322100
Q ss_pred HHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcE
Q 044321 252 ELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQA 331 (521)
Q Consensus 252 ~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~i 331 (521)
.+....++++++.+||.+..++.+. .|||||||||+|||||+.+|++
T Consensus 75 ----------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qRvalaraL~~~p~l 121 (325)
T TIGR01187 75 ----------------------------AEIKPRVLEALRLVQLEEFADRKPH-----QLSGGQQQRVALARALVFKPKI 121 (325)
T ss_pred ----------------------------HHHHHHHHHHHHHcCCcchhcCChh-----hCCHHHHHHHHHHHHHHhCCCE
Confidence 0011245678999999887776654 5999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 332 LFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 332 LlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
|||||||+++|......+.+++.+. .++++|+++|+..++..+||+|++|++|+++..|+++++.
T Consensus 122 llLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 122 LLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999888777776665442 2556666788888999999999999999999999999884
No 298
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=7.3e-31 Score=261.10 Aligned_cols=180 Identities=22% Similarity=0.161 Sum_probs=136.2
Q ss_pred eeeeeEEEEe-----CCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------ceeeecCCccccCCCCHHHHHHHHHHh
Q 044321 173 ILKDVSGIIR-----PGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------NRCDISQHDVHIGEMTVRETLAFSARC 240 (521)
Q Consensus 173 iL~dVS~~I~-----~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------~~~~v~q~d~~~~~lTV~E~l~f~~~~ 240 (521)
.++|+++++. +|++++|+|||||||||||++|+|+++|..+ ..+|++|+...++.+||.|++.+....
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 88 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKD 88 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhh
Confidence 5666666665 7999999999999999999999999887632 236888887667789999998654211
Q ss_pred ccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHH
Q 044321 241 QGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVT 320 (521)
Q Consensus 241 ~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRva 320 (521)
... ......++++.+||.+..++.++ .|||||||||+
T Consensus 89 ~~~--------------------------------------~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~ 125 (246)
T cd03237 89 FYT--------------------------------------HPYFKTEIAKPLQIEQILDREVP-----ELSGGELQRVA 125 (246)
T ss_pred ccc--------------------------------------cHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHHHHH
Confidence 000 00123457788999877776665 59999999999
Q ss_pred HHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEE--EecCHhHH
Q 044321 321 TGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIV--YQGPREYV 395 (521)
Q Consensus 321 IAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv--~~G~~~~v 395 (521)
||+||+.+|+++||||||+++|......+.+++.+. .+++||+++|+...+..+||+|++|+++..+ ..+++..+
T Consensus 126 iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 205 (246)
T cd03237 126 IAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSL 205 (246)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence 999999999999999999998887776666655443 2566777788888899999999999765433 33455443
No 299
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=6.6e-31 Score=289.94 Aligned_cols=185 Identities=18% Similarity=0.250 Sum_probs=148.7
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------ceeeecCCc-cccCCCCHHHHHHHHHH
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------NRCDISQHD-VHIGEMTVRETLAFSAR 239 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------~~~~v~q~d-~~~~~lTV~E~l~f~~~ 239 (521)
+.+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+. .+++.+||.|++.+...
T Consensus 335 ~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~ 414 (556)
T PRK11819 335 GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLD 414 (556)
T ss_pred CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhcc
Confidence 345799999999999999999999999999999999999887632 137899985 57788999999987632
Q ss_pred hccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-cccccccCccCCCCChHHHHH
Q 044321 240 CQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CADTMVGDEILRGISGGQRKR 318 (521)
Q Consensus 240 ~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~~~r~LSGGqrQR 318 (521)
..+... . ......+++.+||.. ..++.++ .||||||||
T Consensus 415 ~~~~~~---------------------~---------------~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~~qr 453 (556)
T PRK11819 415 IIKVGN---------------------R---------------EIPSRAYVGRFNFKGGDQQKKVG-----VLSGGERNR 453 (556)
T ss_pred cccccc---------------------c---------------HHHHHHHHHhCCCChhHhcCchh-----hCCHHHHHH
Confidence 211000 0 001234788899964 4566655 599999999
Q ss_pred HHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeC-CEEE-EecCHhHH
Q 044321 319 VTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISN-GHIV-YQGPREYV 395 (521)
Q Consensus 319 vaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~-G~iv-~~G~~~~v 395 (521)
|+||+||+.+|++|||||||+++|....+.+.+++....+| ||+++|+...+..+||+|++|++ |+++ +.|+.++.
T Consensus 454 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~t-vi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~ 531 (556)
T PRK11819 454 LHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGC-AVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEY 531 (556)
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCe-EEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHH
Confidence 99999999999999999999999999999999988877665 56678888899999999999986 7886 57776554
No 300
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=6.2e-31 Score=254.37 Aligned_cols=166 Identities=21% Similarity=0.255 Sum_probs=128.2
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~E 232 (521)
.+|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..+++ .|++|
T Consensus 22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~ 100 (207)
T cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-GTIRS 100 (207)
T ss_pred ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccC-ccHHH
Confidence 589999999999999999999999999999999999876521 1378888775554 59999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.+... .. .+ .+...++ + + ..+..||
T Consensus 101 ~l~~~~~---~~-----------------------~~---------------~~~~~l~---~----~-----~~~~~LS 127 (207)
T cd03369 101 NLDPFDE---YS-----------------------DE---------------EIYGALR---V----S-----EGGLNLS 127 (207)
T ss_pred HhcccCC---CC-----------------------HH---------------HHHHHhh---c----c-----CCCCcCC
Confidence 8864210 00 00 0111222 1 2 2345799
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecC
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVYQGP 391 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~ 391 (521)
|||+|||+|||||+.+|++|||||||+++|....+.+.+++++. .+.++|+++|+...+.. ||++++|++|+++..|+
T Consensus 128 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~-~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 128 QGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID-YDKILVMDAGEVKEYDH 206 (207)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999998888877777654 34566667777777755 99999999999998886
Q ss_pred H
Q 044321 392 R 392 (521)
Q Consensus 392 ~ 392 (521)
+
T Consensus 207 ~ 207 (207)
T cd03369 207 P 207 (207)
T ss_pred C
Confidence 3
No 301
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=4.5e-31 Score=248.66 Aligned_cols=158 Identities=22% Similarity=0.349 Sum_probs=110.4
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLA 251 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~ 251 (521)
.+|+|+||+|.+|++++|+||||||||||+++|+|+++|. .+...+...+.. ..+ ..+......+++...+
T Consensus 14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~~--~~~----~~~~~~i~~~~q~~~~-- 84 (173)
T cd03230 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD-SGEIKVLGKDIK--KEP----EEVKRRIGYLPEEPSL-- 84 (173)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEEcc--cch----HhhhccEEEEecCCcc--
Confidence 6999999999999999999999999999999999998775 233333332211 111 0111111111111000
Q ss_pred HHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcE
Q 044321 252 ELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQA 331 (521)
Q Consensus 252 ~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~i 331 (521)
.+... ..+.+ .|||||+|||+||+||+.+|++
T Consensus 85 -----------~~~~t-----------------v~~~~--------------------~LS~G~~qrv~laral~~~p~i 116 (173)
T cd03230 85 -----------YENLT-----------------VRENL--------------------KLSGGMKQRLALAQALLHDPEL 116 (173)
T ss_pred -----------ccCCc-----------------HHHHh--------------------hcCHHHHHHHHHHHHHHcCCCE
Confidence 00000 00110 0999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 332 LFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 332 LlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
|+|||||+++|....+.+.+++++. .++++++++|+..++.++||++++|++|++
T Consensus 117 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 117 LILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999998887777776666543 346677778888888899999999999974
No 302
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.97 E-value=9.8e-31 Score=286.87 Aligned_cols=222 Identities=22% Similarity=0.302 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCC-CceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISL-PTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLN 162 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~ 162 (521)
.+..+..++|+.++++.+++.. +...... +...++|+|+++.++.
T Consensus 287 ~~~~~~~~~ri~~ll~~~~~~~--------~~~~~~~~~~~~i~~~~v~f~y~~-------------------------- 332 (529)
T TIGR02857 287 RADGVAAAEALFAVLDAPRPLA--------GKAPVTAAPAPSLEFSGLSVAYPG-------------------------- 332 (529)
T ss_pred HHHHHHHHHHHHHHhCCCcccC--------CCcCCCCCCCCeEEEEEEEEECCC--------------------------
Confidence 5566778888888887443210 0001111 1236999999998631
Q ss_pred cccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCcc
Q 044321 163 ILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDV 223 (521)
Q Consensus 163 ~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~ 223 (521)
..+++|+|+|++|+||+.++|+||||||||||+++|+|+++|+.+ ..+||+|++.
T Consensus 333 ------~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~ 406 (529)
T TIGR02857 333 ------RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPF 406 (529)
T ss_pred ------CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCc
Confidence 123589999999999999999999999999999999999988632 1288999876
Q ss_pred ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccc
Q 044321 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMV 303 (521)
Q Consensus 224 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 303 (521)
+| ..|++||+.++... .+.+...++....+ ..+.++ .+++..||.+
T Consensus 407 lf-~~ti~~Ni~~~~~~-------------------------~~~~~i~~a~~~~~------l~~~i~--~lp~Gldt~v 452 (529)
T TIGR02857 407 LF-AGTIAENIRLARPD-------------------------ASDAEIRRALERAG------LDEFVA--ALPQGLDTLI 452 (529)
T ss_pred cc-CcCHHHHHhccCCC-------------------------CCHHHHHHHHHHcC------cHHHHH--hCcccccchh
Confidence 55 57999999875211 00011111111000 111222 3566789999
Q ss_pred cCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 304 GDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 304 g~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
|+ ....||||||||++|||||+.+|++|+|||||+++|.+..+.+.+.+... .+.++++++|+.. ....||+|++|
T Consensus 453 ~e-~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~-~~~~~d~i~~l 529 (529)
T TIGR02857 453 GE-GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLA-LAERADRIVVL 529 (529)
T ss_pred cc-ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHhCCEEEeC
Confidence 86 55679999999999999999999999999999998888777776666543 3344444556554 45789999986
No 303
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=8.1e-31 Score=267.07 Aligned_cols=201 Identities=26% Similarity=0.312 Sum_probs=154.3
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCc---------------------eeeecCCc--ccc
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN---------------------RCDISQHD--VHI 225 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~---------------------~~~v~q~d--~~~ 225 (521)
....++++||+++++|+.++|+|.||||||||-.+|.+++++.... --.|+|++ .+-
T Consensus 298 ~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLs 377 (534)
T COG4172 298 DHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLS 377 (534)
T ss_pred hheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCC
Confidence 4567999999999999999999999999999999999998775211 03456654 356
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccC
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGD 305 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 305 (521)
|.|||.+-+.-+.....+. + ...+...++.+.|+.+||+... -+
T Consensus 378 PRmtV~qII~EGL~vh~~~--------l------------------------s~~eR~~rv~~aL~EVGLDp~~----r~ 421 (534)
T COG4172 378 PRMTVGQIIEEGLRVHEPK--------L------------------------SAAERDQRVIEALEEVGLDPAT----RN 421 (534)
T ss_pred cccCHHHHhhhhhhhcCCC--------C------------------------CHHHHHHHHHHHHHHcCCChhH----hh
Confidence 7788888777665544321 0 1123345677789999997532 13
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHH----HHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEE
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTF----QIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~----~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
+++..+|||||||++|||||+.+|++++||||||++|. ++++.|+++-++. +-.-++++|+...+..+||+|+||
T Consensus 422 RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~-~LsYLFISHDL~VvrAl~~~viVm 500 (534)
T COG4172 422 RYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKH-GLSYLFISHDLAVVRALCHRVIVM 500 (534)
T ss_pred cCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHh-CCeEEEEeccHHHHHHhhceEEEE
Confidence 55677999999999999999999999999999996654 5666666665543 445555679999999999999999
Q ss_pred eCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHH
Q 044321 382 SNGHIVYQGPREYVLEFFKFMGFECPKRKGVAD 414 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~ad 414 (521)
.+|+||++|+.+++ |..|....+..
T Consensus 501 ~~GkiVE~G~~~~i--------f~~P~~~YT~~ 525 (534)
T COG4172 501 RDGKIVEQGPTEAV--------FANPQHEYTRA 525 (534)
T ss_pred eCCEEeeeCCHHHH--------hcCCCcHHHHH
Confidence 99999999999999 55776654433
No 304
>PLN03232 ABC transporter C family member; Provisional
Probab=99.97 E-value=9.7e-31 Score=315.54 Aligned_cols=237 Identities=18% Similarity=0.191 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
..+...+++|+.++++.+++. ... ..........|+|+|++|.+..
T Consensus 581 ~~~a~~s~~Ri~~~L~~~~~~-----~~~--~~~~~~~~~~I~~~~vsF~y~~--------------------------- 626 (1495)
T PLN03232 581 VVNANVSLQRIEELLLSEERI-----LAQ--NPPLQPGAPAISIKNGYFSWDS--------------------------- 626 (1495)
T ss_pred HHHHHHHHHHHHHHHcCcccc-----ccc--cCCcCCCCCcEEEEeeEEEcCC---------------------------
Confidence 567888999999988765431 000 0001111236899999998631
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------ceeeecCCccccCCCCHHHHHHH
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------NRCDISQHDVHIGEMTVRETLAF 236 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------~~~~v~q~d~~~~~lTV~E~l~f 236 (521)
.....+|+||||+|++|+.++|+||+|||||||+++|.|.++|..+ ..+||+|++.++ +.|++|||.|
T Consensus 627 ----~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf-~gTIreNI~f 701 (1495)
T PLN03232 627 ----KTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIF-NATVRENILF 701 (1495)
T ss_pred ----CCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccc-cccHHHHhhc
Confidence 0123589999999999999999999999999999999999988642 248999987655 5799999999
Q ss_pred HHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHH
Q 044321 237 SARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQR 316 (521)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqr 316 (521)
+... .. + ....+.+++. ..+.+ -.|++..+|.||+. +.+||||||
T Consensus 702 g~~~----~~-e------------------~~~~vl~~~~--------L~~di---~~Lp~Gd~T~IGe~-G~~LSGGQk 746 (1495)
T PLN03232 702 GSDF----ES-E------------------RYWRAIDVTA--------LQHDL---DLLPGRDLTEIGER-GVNISGGQK 746 (1495)
T ss_pred CCcc----CH-H------------------HHHHHHHHhC--------CHHHH---HhCCCCCCceecCC-CcccCHHHH
Confidence 7321 00 0 0011111111 11111 24788899999985 557999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHH-HHHHH--cCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHh
Q 044321 317 KRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLR-QFIHI--LEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPRE 393 (521)
Q Consensus 317 QRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~-~l~~~--~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~ 393 (521)
||++||||+..+|+||||||||+++|....+.+. +++.. .++|+|+++ |.. .....||+|++|++|++++.|+++
T Consensus 747 QRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvT-H~~-~~l~~aD~Ii~L~~G~i~~~Gt~~ 824 (1495)
T PLN03232 747 QRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVT-NQL-HFLPLMDRIILVSEGMIKEEGTFA 824 (1495)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEE-CCh-hhHHhCCEEEEEeCCEEEEecCHH
Confidence 9999999999999999999999999987666543 33322 245666655 444 456789999999999999999999
Q ss_pred HHH
Q 044321 394 YVL 396 (521)
Q Consensus 394 ~v~ 396 (521)
++.
T Consensus 825 eL~ 827 (1495)
T PLN03232 825 ELS 827 (1495)
T ss_pred HHH
Confidence 886
No 305
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.2e-31 Score=290.37 Aligned_cols=191 Identities=18% Similarity=0.274 Sum_probs=146.6
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCc---cccCCC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHD---VHIGEM 228 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d---~~~~~l 228 (521)
.+|+|+||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+. .+++.+
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 346 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH 346 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence 489999999999999999999999999999999999876421 125778874 377889
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCcc
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDEI 307 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~ 307 (521)
|+.||+.++........ +... . .......+..+++.+||. +..++.+++
T Consensus 347 tv~e~l~~~~~~~~~~~---------------~~~~--~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 396 (501)
T PRK11288 347 SVADNINISARRHHLRA---------------GCLI--N-----------NRWEAENADRFIRSLNIKTPSREQLIMN-- 396 (501)
T ss_pred CHHHHhccccchhhccc---------------cccc--C-----------hHHHHHHHHHHHHhcCcccCCccCcccc--
Confidence 99999877532110000 0000 0 000112356789999994 667777764
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
|||||||||+||+||+.+|++|||||||+++|....+.+.+++.++ .+.+||+++|+..++.++||++++|++|+
T Consensus 397 ---LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~ 473 (501)
T PRK11288 397 ---LSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGR 473 (501)
T ss_pred ---CCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCE
Confidence 9999999999999999999999999999999888777776665433 24556777889999999999999999999
Q ss_pred EEEecCHhHH
Q 044321 386 IVYQGPREYV 395 (521)
Q Consensus 386 iv~~G~~~~v 395 (521)
+++.|+++++
T Consensus 474 i~~~~~~~~~ 483 (501)
T PRK11288 474 IAGELAREQA 483 (501)
T ss_pred EEEEEccccC
Confidence 9999987754
No 306
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.97 E-value=2.3e-31 Score=289.99 Aligned_cols=190 Identities=19% Similarity=0.252 Sum_probs=144.8
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-CCC--------------------ceeeecCCc---ccc
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-SLK--------------------NRCDISQHD---VHI 225 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-~~~--------------------~~~~v~q~d---~~~ 225 (521)
.+.+|+||||+|++|++++|+|||||||||||++|+|+++| ..+ ..+|++|+. .++
T Consensus 272 ~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~ 351 (500)
T TIGR02633 272 HRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIV 351 (500)
T ss_pred cccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcC
Confidence 35699999999999999999999999999999999999874 210 126788874 467
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-ccccccc
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CADTMVG 304 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg 304 (521)
+.+||++|+.++..-. ..... .. . ....+..++.+++.+||.. ..++.++
T Consensus 352 ~~~tv~~~~~~~~~~~-~~~~~----~~-------------~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 402 (500)
T TIGR02633 352 PILGVGKNITLSVLKS-FCFKM----RI-------------D-----------AAAELQIIGSAIQRLKVKTASPFLPIG 402 (500)
T ss_pred CCCCHHHHhcchhhhh-hccCC----cC-------------C-----------HHHHHHHHHHHHHhcCccCCCccCccc
Confidence 8899999988753100 00000 00 0 0011224567899999964 4676665
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.++++.+ .+++||+++|+..++.++||++++|+
T Consensus 403 -----~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~ 477 (500)
T TIGR02633 403 -----RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIG 477 (500)
T ss_pred -----cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEE
Confidence 59999999999999999999999999999998887777666555432 35567778899999999999999999
Q ss_pred CCEEEEecCHh
Q 044321 383 NGHIVYQGPRE 393 (521)
Q Consensus 383 ~G~iv~~G~~~ 393 (521)
+|+++..++.+
T Consensus 478 ~G~i~~~~~~~ 488 (500)
T TIGR02633 478 EGKLKGDFVNH 488 (500)
T ss_pred CCEEEEEEccc
Confidence 99999877654
No 307
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.97 E-value=3e-31 Score=253.20 Aligned_cols=161 Identities=22% Similarity=0.245 Sum_probs=121.5
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------------ceeeecCCcc-ccCC
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------------NRCDISQHDV-HIGE 227 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------------~~~~v~q~d~-~~~~ 227 (521)
++.+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+.. .++.
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 35699999999999999999999999999999999999876421 1267888752 3445
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCcc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI 307 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 307 (521)
+||.||+.|.....+... .+....++++++.+||.+..++.+.
T Consensus 84 ~tv~~nl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 126 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSE----------------------------------AEVERRVREALTAVGASGLRERPTH--- 126 (190)
T ss_pred ccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCchhhhhCChh---
Confidence 799999987543211100 0011235678889999877776664
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChh
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAP 369 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~ 369 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+..
T Consensus 127 --~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 127 --CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 59999999999999999999999999999998888777776666543 2455555666543
No 308
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=1.2e-30 Score=287.78 Aligned_cols=185 Identities=19% Similarity=0.260 Sum_probs=148.2
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------ceeeecCCc-cccCCCCHHHHHHHHHH
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------NRCDISQHD-VHIGEMTVRETLAFSAR 239 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------~~~~v~q~d-~~~~~lTV~E~l~f~~~ 239 (521)
+++.+|+||||+|++|++++|+|||||||||||++|+|++.|+.+ ..+|++|+. .+++.+||.|++.+...
T Consensus 333 ~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~ 412 (552)
T TIGR03719 333 GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLD 412 (552)
T ss_pred CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhcc
Confidence 345799999999999999999999999999999999999887632 237899975 46788999999987532
Q ss_pred hccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-cccccccCccCCCCChHHHHH
Q 044321 240 CQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CADTMVGDEILRGISGGQRKR 318 (521)
Q Consensus 240 ~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~~~r~LSGGqrQR 318 (521)
..+... .......+++.+||.. ..++.++ .||||||||
T Consensus 413 ~~~~~~------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGe~qr 451 (552)
T TIGR03719 413 IIQLGK------------------------------------REVPSRAYVGRFNFKGSDQQKKVG-----QLSGGERNR 451 (552)
T ss_pred ccccCc------------------------------------chHHHHHHHHhCCCChhHhcCchh-----hCCHHHHHH
Confidence 111000 0001235788899964 4566655 599999999
Q ss_pred HHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeC-CEEE-EecCHhHH
Q 044321 319 VTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISN-GHIV-YQGPREYV 395 (521)
Q Consensus 319 vaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~-G~iv-~~G~~~~v 395 (521)
|+||++|+.+|++|||||||+++|....+.+.+++.+.++| ||+++|+...+..+||+|++|++ |+++ +.|+.++.
T Consensus 452 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~ 529 (552)
T TIGR03719 452 VHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGC-AVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEY 529 (552)
T ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCe-EEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHH
Confidence 99999999999999999999999999999999998877665 66678888899999999999986 6876 56776543
No 309
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-30 Score=248.78 Aligned_cols=199 Identities=23% Similarity=0.305 Sum_probs=150.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC-CCce---------------------eeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS-LKNR---------------------CDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~-~~~~---------------------~~v~q~d~~~~~l 228 (521)
+.||++||++|++||+.+|+||||||||||.++|+|.-... ..+. ...+|.+.-++..
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV 96 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGV 96 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCe
Confidence 47999999999999999999999999999999999964211 0111 2335666677777
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-cccccccCcc
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CADTMVGDEI 307 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~~ 307 (521)
|+.+.|..+.....-.. .. . .+....+++.++.++++. .+++.|+.
T Consensus 97 ~~~~fLr~a~n~~~~~~-------------------~~-~-----------~~~~~~~~e~~~~l~~~~~~l~R~vN~-- 143 (251)
T COG0396 97 TNSDFLRAAMNARRGAR-------------------GI-L-----------PEFIKELKEKAELLGLDEEFLERYVNE-- 143 (251)
T ss_pred eHHHHHHHHHHhhhccc-------------------cc-c-----------HHHHHHHHHHHHHcCCCHHHhhcccCC--
Confidence 77776655433211000 00 0 112334567889999987 67888875
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhc--CeEEEEeC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLF--DDIILISN 383 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~--D~VivL~~ 383 (521)
|+|||||||..|+.+++.+|++.|||||.|++|....+.+.+-+..+ .+..++++||. ..+.++. |+|.+|.+
T Consensus 144 --GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy-~rll~~i~pD~vhvl~~ 220 (251)
T COG0396 144 --GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHY-QRLLDYIKPDKVHVLYD 220 (251)
T ss_pred --CcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecH-HHHHhhcCCCEEEEEEC
Confidence 89999999999999999999999999999999998888777766554 24444445555 4566666 99999999
Q ss_pred CEEEEecCHhHHHHHHHHcCCCC
Q 044321 384 GHIVYQGPREYVLEFFKFMGFEC 406 (521)
Q Consensus 384 G~iv~~G~~~~v~~~f~~~g~~~ 406 (521)
|+||..|.+ ++.++++..||.|
T Consensus 221 GrIv~sG~~-el~~~le~~gy~~ 242 (251)
T COG0396 221 GRIVKSGDP-ELAEELEEKGYDW 242 (251)
T ss_pred CEEEecCCH-HHHHHHHHhchHH
Confidence 999999999 8889999999865
No 310
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.97 E-value=7.8e-31 Score=252.10 Aligned_cols=164 Identities=23% Similarity=0.228 Sum_probs=124.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV~E 232 (521)
+.+|+||||+|.+|++++|+||||||||||+++|+|.++|..+ ..+|++|+..+++.+|+.+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 92 (198)
T TIGR01189 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALE 92 (198)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHH
Confidence 4699999999999999999999999999999999999876531 1267888777777889999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.+....... + ...+.++++.+||.+..++.++ .||
T Consensus 93 ~l~~~~~~~~~-------------------------------------~-~~~~~~~l~~~~l~~~~~~~~~-----~LS 129 (198)
T TIGR01189 93 NLHFWAAIHGG-------------------------------------A-QRTIEDALAAVGLTGFEDLPAA-----QLS 129 (198)
T ss_pred HHHHHHHHcCC-------------------------------------c-HHHHHHHHHHcCCHHHhcCChh-----hcC
Confidence 98775321100 0 1134567888999877776665 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEE
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
|||||||+||+||+.+|++|+|||||+++|....+.+.+++.+. +.|+|+++|++ .. -.|++++.
T Consensus 130 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~-~~--~~~~~~~~ 197 (198)
T TIGR01189 130 AGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQD-LG--LVEARELR 197 (198)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccc-cc--ccceEEee
Confidence 99999999999999999999999999998887777776666543 45555554443 22 24566654
No 311
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=6.6e-31 Score=253.60 Aligned_cols=177 Identities=24% Similarity=0.295 Sum_probs=125.7
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------ceeeecCCccccCCCCHHHHHHHHHHhccCch
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------NRCDISQHDVHIGEMTVRETLAFSARCQGVGS 245 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~ 245 (521)
.+|+|+||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..++ ..|++||+.+..... .
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~-~~t~~enl~~~~~~~---~ 94 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQ-NGTIRENILFGKPFD---E 94 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhc-cCcHHHHhccCCCcC---H
Confidence 599999999999999999999999999999999999887643 147889987665 679999998742210 0
Q ss_pred hhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHH
Q 044321 246 RYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEML 325 (521)
Q Consensus 246 ~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraL 325 (521)
.......+.. .....+..+ +...++.+. ..+..||||||||++|||||
T Consensus 95 -----~~~~~~~~~~------------------------~l~~~~~~~--~~~~~~~~~-~~~~~lS~G~~qrv~laral 142 (204)
T cd03250 95 -----ERYEKVIKAC------------------------ALEPDLEIL--PDGDLTEIG-EKGINLSGGQKQRISLARAV 142 (204)
T ss_pred -----HHHHHHHHHc------------------------CcHHHHHhc--cCcccceec-CCCCcCCHHHHHHHHHHHHH
Confidence 0000000000 001112211 112223332 23567999999999999999
Q ss_pred cCCCcEEEEeCCChhhHHHHHHHHHH-HHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 326 VGPAQALFMDEISNSTTFQIVNSLRQ-FIHIL--EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 326 v~~P~iLlLDEPTs~~~~~i~~~L~~-l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
+.+|+++||||||+++|....+.+.+ ++... +++++|+++|+...+.. ||++++|++|+
T Consensus 143 ~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 143 YSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR 204 (204)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence 99999999999999999988776655 33322 34566666777767766 99999999985
No 312
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.97 E-value=4.3e-31 Score=288.05 Aligned_cols=191 Identities=21% Similarity=0.300 Sum_probs=147.4
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCc---cccCCC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHD---VHIGEM 228 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d---~~~~~l 228 (521)
.+|+|+||+|.+|++++|+|||||||||||++|+|+++|+.+ ..+|++|+. ..++.+
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 345 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGM 345 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCC
Confidence 479999999999999999999999999999999999876421 137888874 467889
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCcc
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDEI 307 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~ 307 (521)
||.||+.+..... ...... .. . ..+....++.+++.+||. +..++.++
T Consensus 346 tv~e~l~~~~~~~-~~~~~~---~~-------------~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 394 (501)
T PRK10762 346 SVKENMSLTALRY-FSRAGG---SL-------------K-----------HADEQQAVSDFIRLFNIKTPSMEQAIG--- 394 (501)
T ss_pred cHHHHhhhhhhhh-hccccc---cc-------------C-----------HHHHHHHHHHHHHhcCCCCCCccCchh---
Confidence 9999998753100 000000 00 0 000112456789999995 56776665
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+.+||+++|+..++.++||+|++|++|+
T Consensus 395 --~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~ 472 (501)
T PRK10762 395 --LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGR 472 (501)
T ss_pred --hCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCE
Confidence 49999999999999999999999999999998887776666665543 35567777889999999999999999999
Q ss_pred EEEecCHhHH
Q 044321 386 IVYQGPREYV 395 (521)
Q Consensus 386 iv~~G~~~~v 395 (521)
+++.|+++++
T Consensus 473 i~~~~~~~~~ 482 (501)
T PRK10762 473 ISGEFTREQA 482 (501)
T ss_pred EEEEeccccC
Confidence 9999987765
No 313
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.97 E-value=1.2e-30 Score=246.75 Aligned_cols=161 Identities=27% Similarity=0.392 Sum_probs=112.2
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHH-HHHHHHhccCchhhHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRET-LAFSARCQGVGSRYEML 250 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~-l~f~~~~~~~~~~~~~~ 250 (521)
.+|+|+||+|++|++++|+|||||||||||++|+|+++|. .+...+...+ +... ..+...+..+++.
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~-------~~~~~~~~~~~i~~~~q~---- 83 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ-QGEITLDGVP-------VSDLEKALSSLISVLNQR---- 83 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC-CCEEEECCEE-------HHHHHHHHHhhEEEEccC----
Confidence 5999999999999999999999999999999999998775 2333333321 1110 0011111111110
Q ss_pred HHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCc
Q 044321 251 AELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQ 330 (521)
Q Consensus 251 ~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~ 330 (521)
+.. + . ..+.+.+ +..||||||||++|||||+.+|+
T Consensus 84 ---------------~~~--~-~-------------~tv~~~i--------------~~~LS~G~~qrv~laral~~~p~ 118 (178)
T cd03247 84 ---------------PYL--F-D-------------TTLRNNL--------------GRRFSGGERQRLALARILLQDAP 118 (178)
T ss_pred ---------------Cee--e-c-------------ccHHHhh--------------cccCCHHHHHHHHHHHHHhcCCC
Confidence 000 0 0 0000100 34699999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 331 ALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 331 iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
+|||||||+++|....+.+.+++.+. .++++++++|+.+++. .||++++|++|++++.|
T Consensus 119 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 119 IVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEecC
Confidence 99999999999888777777766543 3455666677777764 79999999999998765
No 314
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.97 E-value=5.6e-31 Score=249.59 Aligned_cols=166 Identities=30% Similarity=0.444 Sum_probs=125.1
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEML 250 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~ 250 (521)
..+|+|+||+|++|++++|+||||||||||+++|+|+++|. .+..++...+. ......+ +...+.
T Consensus 12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~-~G~v~~~g~~~--~~~~~~~---~~~~i~--------- 76 (180)
T cd03214 12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS-SGEILLDGKDL--ASLSPKE---LARKIA--------- 76 (180)
T ss_pred eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEEC--CcCCHHH---HHHHHh---------
Confidence 46999999999999999999999999999999999998775 33444443322 1112111 000000
Q ss_pred HHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCc
Q 044321 251 AELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQ 330 (521)
Q Consensus 251 ~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~ 330 (521)
.+..+++.+||.+..++.+ ..||||||||++|||||+.+|+
T Consensus 77 ----------------------------------~~~q~l~~~gl~~~~~~~~-----~~LS~G~~qrl~laral~~~p~ 117 (180)
T cd03214 77 ----------------------------------YVPQALELLGLAHLADRPF-----NELSGGERQRVLLARALAQEPP 117 (180)
T ss_pred ----------------------------------HHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhcCCC
Confidence 0011667788876666544 4599999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHc--C-CeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 331 ALFMDEISNSTTFQIVNSLRQFIHIL--E-GTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 331 iLlLDEPTs~~~~~i~~~L~~l~~~~--~-~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
++||||||+++|....+.+.+++.+. + +.++++++|+..++.++||++++|++|++++.|
T Consensus 118 llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 118 ILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999887777776666543 2 456666778888888999999999999998764
No 315
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.97 E-value=7.8e-31 Score=256.97 Aligned_cols=181 Identities=25% Similarity=0.306 Sum_probs=138.9
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------ceeeecCCcccc--CCCCHHHHHHHHHHhc-
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------NRCDISQHDVHI--GEMTVRETLAFSARCQ- 241 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------~~~~v~q~d~~~--~~lTV~E~l~f~~~~~- 241 (521)
|+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|++..+ +.+|+.+|+.++....
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 57899999999999999999999999999876531 247888876543 3479999987753210
Q ss_pred cCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHH
Q 044321 242 GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTT 321 (521)
Q Consensus 242 ~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaI 321 (521)
+... ... ......+..+++.+||.+..++.++ .|||||||||+|
T Consensus 81 ~~~~-------------------~~~------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~l 124 (223)
T TIGR03771 81 GWLR-------------------RPC------------VADFAAVRDALRRVGLTELADRPVG-----ELSGGQRQRVLV 124 (223)
T ss_pred cccc-------------------CCc------------HHHHHHHHHHHHHhCCchhhcCChh-----hCCHHHHHHHHH
Confidence 0000 000 0011235668899999877776655 599999999999
Q ss_pred HHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 322 GEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 322 AraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
|+||+.+|++|||||||+++|....+.+.+++.+. .+.++++++|+.+++.++||++++| +|++++.|+.+++.
T Consensus 125 aral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 125 ARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 99999999999999999998887777777766543 3556666778888899999999999 89999999988763
No 316
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=3.3e-30 Score=249.63 Aligned_cols=196 Identities=20% Similarity=0.221 Sum_probs=156.0
Q ss_pred CCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeec--------CCccccCCCCHHHHHHHHH
Q 044321 167 RKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDIS--------QHDVHIGEMTVRETLAFSA 238 (521)
Q Consensus 167 ~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~--------q~d~~~~~lTV~E~l~f~~ 238 (521)
+.....+|+||||++.+||.++|+|+||||||||||+|+|.++|+.+ ...+. -.--+-|++|.+||+.|..
T Consensus 36 ~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G-~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~ 114 (249)
T COG1134 36 KVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSG-KVKVTGKVAPLIELGAGFDPELTGRENIYLRG 114 (249)
T ss_pred CcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCc-eEEEcceEehhhhcccCCCcccchHHHHHHHH
Confidence 45667899999999999999999999999999999999999999742 21111 1223567899999999987
Q ss_pred HhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHH
Q 044321 239 RCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKR 318 (521)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQR 318 (521)
.+.|... ++++...+++.+.-+|.+..|.+| +++|.||+-|
T Consensus 115 ~~~G~~~----------------------------------~ei~~~~~eIieFaELG~fi~~Pv-----ktYSSGM~aR 155 (249)
T COG1134 115 LILGLTR----------------------------------KEIDEKVDEIIEFAELGDFIDQPV-----KTYSSGMYAR 155 (249)
T ss_pred HHhCccH----------------------------------HHHHHHHHHHHHHHHHHHHhhCch-----hhccHHHHHH
Confidence 6655421 223456777888888888888766 4699999999
Q ss_pred HHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 319 VTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 319 vaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
++.|.|...+|+|||+||..+..|..+.+.-.+.+.++ +..+|++++|+...+.++||++++|++|++.+.|.++++.
T Consensus 156 LaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi 235 (249)
T COG1134 156 LAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVI 235 (249)
T ss_pred HHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHH
Confidence 99999999999999999999966655443322222222 4577777889999999999999999999999999999999
Q ss_pred HHHHHc
Q 044321 397 EFFKFM 402 (521)
Q Consensus 397 ~~f~~~ 402 (521)
++|+..
T Consensus 236 ~~Y~~~ 241 (249)
T COG1134 236 PAYEED 241 (249)
T ss_pred HHHHHh
Confidence 888653
No 317
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=8.9e-31 Score=247.78 Aligned_cols=163 Identities=28% Similarity=0.420 Sum_probs=111.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEML 250 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~ 250 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|+ .+..++.+.+.. ..+- ....+......+.+...
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~--~~~~-~~~~~~~~i~~~~q~~~-- 86 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD-SGSILIDGEDLT--DLED-ELPPLRRRIGMVFQDFA-- 86 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEECCEEcc--ccch-hHHHHhhcEEEEecCCc--
Confidence 46999999999999999999999999999999999998775 344444443221 1110 00001111111111000
Q ss_pred HHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCc
Q 044321 251 AELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQ 330 (521)
Q Consensus 251 ~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~ 330 (521)
+.+... +.+.+.+ .||||||||++||+||+.+|+
T Consensus 87 -----------~~~~~t---------------------~~~~l~~--------------~lS~G~~qr~~la~al~~~p~ 120 (178)
T cd03229 87 -----------LFPHLT---------------------VLENIAL--------------GLSGGQQQRVALARALAMDPD 120 (178)
T ss_pred -----------cCCCCC---------------------HHHheee--------------cCCHHHHHHHHHHHHHHCCCC
Confidence 000000 1111111 199999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHc--C-CeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 331 ALFMDEISNSTTFQIVNSLRQFIHIL--E-GTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 331 iLlLDEPTs~~~~~i~~~L~~l~~~~--~-~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
++||||||+++|......+.+++.+. . ++++++++|+.+++.++||++++|++|+
T Consensus 121 llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 99999999998888777777666543 2 4667777888888888999999999884
No 318
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.97 E-value=2.2e-30 Score=312.11 Aligned_cols=244 Identities=18% Similarity=0.149 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHh-h--------hhhcCC--CCC-ceeEEeeeeEEEEEeecCCCCCCcchhhhh
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKN-R--------IARVGI--SLP-TIEVRFEHLNVEAEAYVGSRALPTFFNFCA 151 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~--------~~~~g~--~~~-~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~ 151 (521)
.+....+++|+.++++.++|.....-.. . .+.... ..| ...|+|+||++.|..
T Consensus 1165 le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~--------------- 1229 (1490)
T TIGR01271 1165 VDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTE--------------- 1229 (1490)
T ss_pred HHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCC---------------
Confidence 3556788899999887655421000000 0 000000 113 247999999999731
Q ss_pred hHHHhhhhhcccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------
Q 044321 152 NIVEGFLNSLNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------ 213 (521)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------ 213 (521)
+...+|+||||+|+|||.+||+|+||||||||+++|.|++++...
T Consensus 1230 -----------------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~ 1292 (1490)
T TIGR01271 1230 -----------------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRK 1292 (1490)
T ss_pred -----------------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHh
Confidence 123699999999999999999999999999999999999863211
Q ss_pred ceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHc
Q 044321 214 NRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKIL 293 (521)
Q Consensus 214 ~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l 293 (521)
..+||+|++.+|. .|+++||...... +.+....+....+ ..+ .+ -
T Consensus 1293 ~is~IpQdp~LF~-GTIR~NLdp~~~~--------------------------tdeei~~aL~~~~-----L~~-~i--~ 1337 (1490)
T TIGR01271 1293 AFGVIPQKVFIFS-GTFRKNLDPYEQW--------------------------SDEEIWKVAEEVG-----LKS-VI--E 1337 (1490)
T ss_pred ceEEEeCCCccCc-cCHHHHhCcccCC--------------------------CHHHHHHHHHHCC-----CHH-HH--H
Confidence 1278999887765 6999999643110 0111111111100 001 11 1
Q ss_pred CCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHH
Q 044321 294 GLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETY 372 (521)
Q Consensus 294 gL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~ 372 (521)
.+++..||.||+ .+..||||||||++|||||+++|+||||||||+++|.+.-..+.+.+... ...++|+++|... +.
T Consensus 1338 ~lp~GLdt~v~e-~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~-ti 1415 (1490)
T TIGR01271 1338 QFPDKLDFVLVD-GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVE-AL 1415 (1490)
T ss_pred hCcccccccccc-CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHH-HH
Confidence 355678999986 55679999999999999999999999999999988777766666655443 3455555666654 55
Q ss_pred hhcCeEEEEeCCEEEEecCHhHHH
Q 044321 373 DLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 373 ~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
..||+|++|++|+|++.|++++++
T Consensus 1416 ~~~DrIlvL~~G~ivE~g~p~~Ll 1439 (1490)
T TIGR01271 1416 LECQQFLVIEGSSVKQYDSIQKLL 1439 (1490)
T ss_pred HhCCEEEEEECCEEEEeCCHHHHH
Confidence 569999999999999999999986
No 319
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=4.7e-31 Score=257.63 Aligned_cols=208 Identities=22% Similarity=0.296 Sum_probs=149.6
Q ss_pred CCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---ceeeecCCccccCCCCHHH--HHHHHHHhcc
Q 044321 168 KKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---NRCDISQHDVHIGEMTVRE--TLAFSARCQG 242 (521)
Q Consensus 168 ~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---~~~~v~q~d~~~~~lTV~E--~l~f~~~~~~ 242 (521)
+....+++||||+|++|++++++|||||||||+||+|+|++.|+.+ +.+++|+.+. -.+.. ++.|+-+.+
T Consensus 34 ~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~----~~~~~~~~~v~gqk~q- 108 (325)
T COG4586 34 ERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRR----EEYLRSIGLVMGQKLQ- 108 (325)
T ss_pred hhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhH----HHHHHHHHHHhhhhhe-
Confidence 3456699999999999999999999999999999999999998742 2233333211 00000 111111111
Q ss_pred CchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHH
Q 044321 243 VGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTG 322 (521)
Q Consensus 243 ~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIA 322 (521)
+.-.+... .+............++..++.+++.++++|+...+.+| |.||-|||.|+.||
T Consensus 109 ------l~Wdlp~~---------ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~v-----r~LSlGqRmraeLa 168 (325)
T COG4586 109 ------LWWDLPAL---------DSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPV-----RKLSLGQRMRAELA 168 (325)
T ss_pred ------eeeechhh---------hhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhh-----hhccchHHHHHHHH
Confidence 00000000 01111111223334455667888999999998877665 56999999999999
Q ss_pred HHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHHHHH
Q 044321 323 EMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFF 399 (521)
Q Consensus 323 raLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~~~f 399 (521)
.+|+++|++|||||||-++|......+++++++. .+++|+.++|....+..+||+|++|+.|+++|.|+.+++.+-|
T Consensus 169 aaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f 248 (325)
T COG4586 169 AALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQF 248 (325)
T ss_pred HHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHh
Confidence 9999999999999999988877766666666543 3677777889999999999999999999999999999988765
Q ss_pred H
Q 044321 400 K 400 (521)
Q Consensus 400 ~ 400 (521)
.
T Consensus 249 ~ 249 (325)
T COG4586 249 G 249 (325)
T ss_pred C
Confidence 3
No 320
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2e-30 Score=290.02 Aligned_cols=184 Identities=23% Similarity=0.278 Sum_probs=145.3
Q ss_pred CCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------ceeeecCCcc--ccCCCCHHHHHHHH
Q 044321 168 KKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------NRCDISQHDV--HIGEMTVRETLAFS 237 (521)
Q Consensus 168 ~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------~~~~v~q~d~--~~~~lTV~E~l~f~ 237 (521)
++.+.+|+||||+|.+|++++|+|||||||||||++|+|.++|+.+ ..+|++|+.. +.+..|+.+++...
T Consensus 322 y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~ 401 (638)
T PRK10636 322 YGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARL 401 (638)
T ss_pred eCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHh
Confidence 3456799999999999999999999999999999999999887532 1267777531 23344555443210
Q ss_pred HHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-cccccccCccCCCCChHHH
Q 044321 238 ARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CADTMVGDEILRGISGGQR 316 (521)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~~~r~LSGGqr 316 (521)
. + ......+..+|+.+++.. ..++.++ .||||||
T Consensus 402 ---~----------------------~---------------~~~~~~~~~~L~~~~l~~~~~~~~~~-----~LSgGek 436 (638)
T PRK10636 402 ---A----------------------P---------------QELEQKLRDYLGGFGFQGDKVTEETR-----RFSGGEK 436 (638)
T ss_pred ---C----------------------c---------------hhhHHHHHHHHHHcCCChhHhcCchh-----hCCHHHH
Confidence 0 0 001123466889999963 5666665 4999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEE-EecCHhHH
Q 044321 317 KRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIV-YQGPREYV 395 (521)
Q Consensus 317 QRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv-~~G~~~~v 395 (521)
|||+||++|+.+|++|||||||+++|......|.+++...++ +||+++|+...+..+||+|++|++|+++ +.|+.++.
T Consensus 437 qRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~g-tvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 437 ARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEG-ALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence 999999999999999999999999999999999999888776 4566778888999999999999999997 88998887
Q ss_pred HH
Q 044321 396 LE 397 (521)
Q Consensus 396 ~~ 397 (521)
.+
T Consensus 516 ~~ 517 (638)
T PRK10636 516 QQ 517 (638)
T ss_pred HH
Confidence 54
No 321
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.97 E-value=2.2e-30 Score=242.64 Aligned_cols=142 Identities=25% Similarity=0.343 Sum_probs=117.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------ceeeecCCccccCCCCHHHHHHHHHHhcc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------NRCDISQHDVHIGEMTVRETLAFSARCQG 242 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------~~~~v~q~d~~~~~lTV~E~l~f~~~~~~ 242 (521)
+.+|+|+||+|++|++++|+||||||||||+++|+|+++|..+ ..+|++|+..+ +.+|+.||+.+.
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~-~~~tv~~nl~~~----- 87 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYL-PLGTLREQLIYP----- 87 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCcc-ccccHHHHhhcc-----
Confidence 4699999999999999999999999999999999999887532 24788887654 467888876531
Q ss_pred CchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHH
Q 044321 243 VGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTG 322 (521)
Q Consensus 243 ~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIA 322 (521)
.+..||||||||++||
T Consensus 88 ----------------------------------------------------------------~~~~LS~G~~~rv~la 103 (166)
T cd03223 88 ----------------------------------------------------------------WDDVLSGGEQQRLAFA 103 (166)
T ss_pred ----------------------------------------------------------------CCCCCCHHHHHHHHHH
Confidence 0135999999999999
Q ss_pred HHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 323 EMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 323 raLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
|||+.+|++|+|||||+++|....+.+.+++.+.+.|+|+ ++|+.. ...+||++++|++|
T Consensus 104 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiii-vsh~~~-~~~~~d~i~~l~~~ 163 (166)
T cd03223 104 RLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVIS-VGHRPS-LWKFHDRVLDLDGE 163 (166)
T ss_pred HHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEE-EeCChh-HHhhCCEEEEEcCC
Confidence 9999999999999999999999999998888776555555 556554 45799999999875
No 322
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.97 E-value=1.2e-30 Score=285.08 Aligned_cols=187 Identities=16% Similarity=0.175 Sum_probs=144.3
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCc---cccCCCC
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHD---VHIGEMT 229 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d---~~~~~lT 229 (521)
+|+||||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|+. .+++.+|
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t 357 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAP 357 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCc
Confidence 69999999999999999999999999999999999876421 126777763 3667788
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCccC
Q 044321 230 VRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDEIL 308 (521)
Q Consensus 230 V~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~~ 308 (521)
+.+++.+..... ... .. . ....+..++.+|+.+||. ...++.++
T Consensus 358 ~~~~l~~~~~~~-~~~-----------------~~--~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 402 (510)
T PRK15439 358 LAWNVCALTHNR-RGF-----------------WI--K-----------PARENAVLERYRRALNIKFNHAEQAAR---- 402 (510)
T ss_pred HHHHHHhhhhhh-hcc-----------------cc--C-----------hHHHHHHHHHHHHHcCCCCCCccCccc----
Confidence 888875421000 000 00 0 000112456789999997 66777665
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.++ .+.+||+++|+..++.++||++++|++|++
T Consensus 403 -~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i 481 (510)
T PRK15439 403 -TLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481 (510)
T ss_pred -cCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 59999999999999999999999999999999888777777766543 356677778999999999999999999999
Q ss_pred EEecCHhHH
Q 044321 387 VYQGPREYV 395 (521)
Q Consensus 387 v~~G~~~~v 395 (521)
++.|.++++
T Consensus 482 ~~~~~~~~~ 490 (510)
T PRK15439 482 SGALTGAAI 490 (510)
T ss_pred EEEEccccC
Confidence 999977654
No 323
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.97 E-value=1.4e-30 Score=247.29 Aligned_cols=142 Identities=23% Similarity=0.342 Sum_probs=110.5
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeee---------------------cCCc---cccCCC
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDI---------------------SQHD---VHIGEM 228 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v---------------------~q~d---~~~~~l 228 (521)
+|+|+||+|++|++++|+||||||||||+++|+|+++|+. +..++ +|+. .+++.+
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 93 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPAS-GEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDL 93 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC-ceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCC
Confidence 8999999999999999999999999999999999987752 22333 3321 122233
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
|++||+.+.
T Consensus 94 t~~e~l~~~----------------------------------------------------------------------- 102 (182)
T cd03215 94 SVAENIALS----------------------------------------------------------------------- 102 (182)
T ss_pred cHHHHHHHH-----------------------------------------------------------------------
Confidence 333332221
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
..|||||||||+||+||+.+|++|||||||+++|....+.+.+++... .+.++++++|+..++.++||++++|++|++
T Consensus 103 ~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 103 SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred hhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 019999999999999999999999999999998888777777666543 345666777888889999999999999974
No 324
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.3e-30 Score=256.71 Aligned_cols=183 Identities=24% Similarity=0.278 Sum_probs=143.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEML 250 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~ 250 (521)
..+++||||+|++||+++|+|.||||||||-++|.|+++|+ .+..+....+.. .++.
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~--~~~~-------------------- 82 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDIT--KLSK-------------------- 82 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchh--hcch--------------------
Confidence 57999999999999999999999999999999999999886 344444444321 1110
Q ss_pred HHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-cccccccCccCCCCChHHHHHHHHHHHHcCCC
Q 044321 251 AELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CADTMVGDEILRGISGGQRKRVTTGEMLVGPA 329 (521)
Q Consensus 251 ~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P 329 (521)
.+..+.+.++|+.+||.. .++ ++++.|||||+||++|||||+.+|
T Consensus 83 -----------------------------~~~~~~v~elL~~Vgl~~~~~~-----ryPhelSGGQrQRi~IARALal~P 128 (268)
T COG4608 83 -----------------------------EERRERVLELLEKVGLPEEFLY-----RYPHELSGGQRQRIGIARALALNP 128 (268)
T ss_pred -----------------------------hHHHHHHHHHHHHhCCCHHHhh-----cCCcccCchhhhhHHHHHHHhhCC
Confidence 011234677899999865 344 455679999999999999999999
Q ss_pred cEEEEeCCChhhH----HHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHHHHHHHcCCC
Q 044321 330 QALFMDEISNSTT----FQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFKFMGFE 405 (521)
Q Consensus 330 ~iLlLDEPTs~~~----~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~~~f~~~g~~ 405 (521)
+++++|||+|++| .++.+.|.++-.+. +.+.+.++|+...+..++|+|.+|..|+||+.|+.+++ |.
T Consensus 129 ~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~-~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~--------~~ 199 (268)
T COG4608 129 KLIVADEPVSALDVSVQAQILNLLKDLQEEL-GLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEV--------FS 199 (268)
T ss_pred cEEEecCchhhcchhHHHHHHHHHHHHHHHh-CCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHH--------hh
Confidence 9999999999655 46666666665544 45555667888899999999999999999999999998 45
Q ss_pred CCCCCCHHHHHHHh
Q 044321 406 CPKRKGVADFLQEV 419 (521)
Q Consensus 406 ~p~~~~~adfl~~v 419 (521)
.|.+..+...+..+
T Consensus 200 ~p~HpYTk~Ll~a~ 213 (268)
T COG4608 200 NPLHPYTKALLSAV 213 (268)
T ss_pred CCCCHHHHHHHHhC
Confidence 77777666665544
No 325
>PLN03130 ABC transporter C family member; Provisional
Probab=99.97 E-value=5.1e-30 Score=310.04 Aligned_cols=237 Identities=16% Similarity=0.182 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
..+...+++|+.++++.+.... .. + .........|+|+|++|.+..
T Consensus 581 ~~~a~~s~~RI~~~L~~~e~~~-----~~-~-~~~~~~~~~I~~~nvsf~y~~--------------------------- 626 (1622)
T PLN03130 581 AVNANVSLKRLEELLLAEERVL-----LP-N-PPLEPGLPAISIKNGYFSWDS--------------------------- 626 (1622)
T ss_pred HHHHHHHHHHHHHHHcCccccc-----cc-C-CcccCCCCceEEEeeEEEccC---------------------------
Confidence 5677888899988886543210 00 0 000111235899999998631
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC-C------ceeeecCCccccCCCCHHHHHHH
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL-K------NRCDISQHDVHIGEMTVRETLAF 236 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~-~------~~~~v~q~d~~~~~lTV~E~l~f 236 (521)
.....+|+|||++|++|++++|+||+|||||||+++|.|.+++.. + ..+||+|++.++ +.|++|||.|
T Consensus 627 ----~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~Lf-ngTIreNI~f 701 (1622)
T PLN03130 627 ----KAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIF-NATVRDNILF 701 (1622)
T ss_pred ----CCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccC-CCCHHHHHhC
Confidence 012358999999999999999999999999999999999998865 2 238999987655 5899999999
Q ss_pred HHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHH
Q 044321 237 SARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQR 316 (521)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqr 316 (521)
+.... . . ......+++.. .+. .-.|++..+|.||+. +..||||||
T Consensus 702 g~~~d----~----e---------------~y~~vl~a~~L--------~~d---i~~LP~Gd~T~IGe~-G~~LSGGQK 746 (1622)
T PLN03130 702 GSPFD----P----E---------------RYERAIDVTAL--------QHD---LDLLPGGDLTEIGER-GVNISGGQK 746 (1622)
T ss_pred CCccc----H----H---------------HHHHHHHHhCc--------HHH---HHhCCCcccccccCC-CCCCCHHHH
Confidence 73210 0 0 00111111111 111 224778889999985 557999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHH-HHHHHH--cCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHh
Q 044321 317 KRVTTGEMLVGPAQALFMDEISNSTTFQIVNSL-RQFIHI--LEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPRE 393 (521)
Q Consensus 317 QRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L-~~l~~~--~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~ 393 (521)
|||+|||||..+|+||||||||+++|....+.+ .+.+.. .++|+|+++ |.. .....||+|++|++|++++.|+++
T Consensus 747 QRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVT-H~l-~~l~~aD~Ii~L~~G~i~e~Gt~~ 824 (1622)
T PLN03130 747 QRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVT-NQL-HFLSQVDRIILVHEGMIKEEGTYE 824 (1622)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEE-CCH-hHHHhCCEEEEEeCCEEEEeCCHH
Confidence 999999999999999999999999988766544 333322 245666555 444 467789999999999999999999
Q ss_pred HHH
Q 044321 394 YVL 396 (521)
Q Consensus 394 ~v~ 396 (521)
++.
T Consensus 825 eL~ 827 (1622)
T PLN03130 825 ELS 827 (1622)
T ss_pred HHH
Confidence 885
No 326
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=3.8e-30 Score=247.82 Aligned_cols=164 Identities=20% Similarity=0.197 Sum_probs=124.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV~E 232 (521)
+++|+|+||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+..+++.+||.+
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 93 (200)
T PRK13540 14 QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRE 93 (200)
T ss_pred eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHH
Confidence 4699999999999999999999999999999999999876531 1267777666667889999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.+..... . ....++++++.+++.+..++.++ .||
T Consensus 94 ~~~~~~~~~---~------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS 129 (200)
T PRK13540 94 NCLYDIHFS---P------------------------------------GAVGITELCRLFSLEHLIDYPCG-----LLS 129 (200)
T ss_pred HHHHHHhcC---c------------------------------------chHHHHHHHHHcCCchhhhCChh-----hcC
Confidence 987753110 0 00134567888999876666554 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEE
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDII 379 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~Vi 379 (521)
|||+|||+||+||+.+|++|||||||+++|....+.+.+++.+. .++++++++|+... .+.+|...
T Consensus 130 ~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-~~~~d~~~ 197 (200)
T PRK13540 130 SGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP-LNKADYEE 197 (200)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh-ccccchhh
Confidence 99999999999999999999999999999888777777766542 34455556666443 35577543
No 327
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.6e-30 Score=264.81 Aligned_cols=235 Identities=25% Similarity=0.304 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCC-CCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcccc
Q 044321 86 ERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGIS-LPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNIL 164 (521)
Q Consensus 86 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~ 164 (521)
+...-+|++++..+...+ ..++.+...+. .....|.|.|++|.+.
T Consensus 228 q~ltdme~mfdLl~~~~~-----v~d~pda~~L~~~~~g~v~F~~V~F~y~----------------------------- 273 (497)
T COG5265 228 QALTDMEKMFDLLDVEAE-----VSDAPDAPPLWPVRLGAVAFINVSFAYD----------------------------- 273 (497)
T ss_pred HhhhhHHHHHHhhccchh-----hccCCCCccccccccceEEEEEEEeecc-----------------------------
Confidence 334445666665555444 22332222221 1134689999999863
Q ss_pred cCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCc-------------------eeeecCCcccc
Q 044321 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN-------------------RCDISQHDVHI 225 (521)
Q Consensus 165 ~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~-------------------~~~v~q~d~~~ 225 (521)
..+++|+++||.+++|+.++|+||+|+||||++++|-.+++++.+. .+.|+|+.++
T Consensus 274 ----~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvL- 348 (497)
T COG5265 274 ----PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVL- 348 (497)
T ss_pred ----ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCccccee-
Confidence 3457999999999999999999999999999999999999886431 1677886554
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccC
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGD 305 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 305 (521)
++-|...|+.|+. |+...+....++.. -++.+.+. .|++.++|.||+
T Consensus 349 FNDti~yni~ygr-------------------------~~at~eev~aaa~~-----aqi~~fi~---~lP~gy~t~Vge 395 (497)
T COG5265 349 FNDTIAYNIKYGR-------------------------PDATAEEVGAAAEA-----AQIHDFIQ---SLPEGYDTGVGE 395 (497)
T ss_pred hhhhHHHHHhccC-------------------------ccccHHHHHHHHHH-----hhhhHHHH---hCchhhhcccch
Confidence 4678888888863 22222222222211 11223322 389999999998
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHH----HHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEE
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQ----IVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~----i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
++.+ |||||||||+|||+++.+|+||+|||.||++|-. +...|+... .+.|++++.|.- .+.--+|.|+||
T Consensus 396 rglk-lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~--~~rttlviahrl--sti~~adeiivl 470 (497)
T COG5265 396 RGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS--AGRTTLVIAHRL--STIIDADEIIVL 470 (497)
T ss_pred heee-ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh--CCCeEEEEeehh--hhccCCceEEEe
Confidence 6553 9999999999999999999999999999976554 444454443 367888876543 345569999999
Q ss_pred eCCEEEEecCHhHHHH
Q 044321 382 SNGHIVYQGPREYVLE 397 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~~ 397 (521)
++|+|++.|++++++.
T Consensus 471 ~~g~i~erg~h~~ll~ 486 (497)
T COG5265 471 DNGRIVERGTHEELLA 486 (497)
T ss_pred eCCEEEecCcHHHHHH
Confidence 9999999999999874
No 328
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.6e-29 Score=282.73 Aligned_cols=210 Identities=21% Similarity=0.257 Sum_probs=147.1
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCc--------eeeecCCccccCCCCHHHHHHHHHHh
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN--------RCDISQHDVHIGEMTVRETLAFSARC 240 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~--------~~~v~q~d~~~~~lTV~E~l~f~~~~ 240 (521)
+.+.+|+||||+|.+|++++|+|||||||||||++|+|.+.|+.+. .+|++|....+ ..|+.+.+.-...
T Consensus 12 g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~-~~~~~~~v~~~~~- 89 (638)
T PRK10636 12 GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPAL-PQPALEYVIDGDR- 89 (638)
T ss_pred CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCC-CCCHHHHHHHhhH-
Confidence 3457999999999999999999999999999999999988776321 14566643322 3465554432110
Q ss_pred ccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHH----hhhchhhhhHHHHHHHHcCCC-ccccccccCccCCCCChHH
Q 044321 241 QGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAA----ATEGQEVSVITDYILKILGLD-VCADTMVGDEILRGISGGQ 315 (521)
Q Consensus 241 ~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~~r~LSGGq 315 (521)
.+..++......... .....+.... ...+.+....+..+|+.+||. +..+..++ .|||||
T Consensus 90 --------~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~-----~LSgGe 154 (638)
T PRK10636 90 --------EYRQLEAQLHDANER--NDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVS-----DFSGGW 154 (638)
T ss_pred --------HHHHHHHHHHHHhcc--CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchh-----hcCHHH
Confidence 011111100000000 0000000000 011223345678899999997 46676665 499999
Q ss_pred HHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEE-EecCHhH
Q 044321 316 RKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIV-YQGPREY 394 (521)
Q Consensus 316 rQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv-~~G~~~~ 394 (521)
||||+||++|+.+|++|||||||+++|...+..|.+++...++ +||+++|+...+..+||+|++|++|+++ |.|+.+.
T Consensus 155 rqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~-tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~ 233 (638)
T PRK10636 155 RMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQG-TLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSS 233 (638)
T ss_pred HHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHH
Confidence 9999999999999999999999999999999999999887665 4555678888999999999999999996 6788765
Q ss_pred HH
Q 044321 395 VL 396 (521)
Q Consensus 395 v~ 396 (521)
..
T Consensus 234 ~~ 235 (638)
T PRK10636 234 FE 235 (638)
T ss_pred HH
Confidence 54
No 329
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=4.5e-30 Score=287.36 Aligned_cols=186 Identities=24% Similarity=0.288 Sum_probs=149.1
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------ceeeecCCc-cccCCCCHHHHHHHHHH
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------NRCDISQHD-VHIGEMTVRETLAFSAR 239 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------~~~~v~q~d-~~~~~lTV~E~l~f~~~ 239 (521)
+.+++|+||||+|.+|++++|+|||||||||||++|+|+++|+.+ ..+|++|+. .+++.+||.|++.+...
T Consensus 330 ~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~ 409 (635)
T PRK11147 330 DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQ 409 (635)
T ss_pred CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcc
Confidence 446799999999999999999999999999999999999877532 137888864 47788999999977421
Q ss_pred hccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCccCCCCChHHHHH
Q 044321 240 CQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDEILRGISGGQRKR 318 (521)
Q Consensus 240 ~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~~r~LSGGqrQR 318 (521)
..... . ....+..+|+.+++. +..++.++ .||||||||
T Consensus 410 ~~~~~----------------------~--------------~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqR 448 (635)
T PRK11147 410 EVMVN----------------------G--------------RPRHVLGYLQDFLFHPKRAMTPVK-----ALSGGERNR 448 (635)
T ss_pred ccccc----------------------c--------------hHHHHHHHHHhcCCCHHHHhChhh-----hCCHHHHHH
Confidence 00000 0 001235578888985 45666665 599999999
Q ss_pred HHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEe-CCEEE-EecCHhHHH
Q 044321 319 VTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILIS-NGHIV-YQGPREYVL 396 (521)
Q Consensus 319 vaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~-~G~iv-~~G~~~~v~ 396 (521)
|+||++|+.+|++|||||||+++|....+.|.+++...++| ||+++|+...+..+||+|++|+ +|+++ |.|+.++..
T Consensus 449 l~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~t-vi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~ 527 (635)
T PRK11147 449 LLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGT-VLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR 527 (635)
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCe-EEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence 99999999999999999999999999999999998877664 5567788888999999999998 89986 567776653
No 330
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.5e-30 Score=251.77 Aligned_cols=206 Identities=25% Similarity=0.329 Sum_probs=138.6
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCC--CCHHHHHHHHHH-hccCch
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGE--MTVRETLAFSAR-CQGVGS 245 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~--lTV~E~l~f~~~-~~~~~~ 245 (521)
++++||+|||++|+|||-.+|+|||||||||||++|+|..+|+ .....+.....--.+ -.++.+|-+... +.....
T Consensus 42 ~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps-sg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~ 120 (257)
T COG1119 42 NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS-SGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFR 120 (257)
T ss_pred CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC-CCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcc
Confidence 4568999999999999999999999999999999999988886 333333322110000 123333332110 000000
Q ss_pred hhHHHHH--HHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHH
Q 044321 246 RYEMLAE--LTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGE 323 (521)
Q Consensus 246 ~~~~~~~--l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAr 323 (521)
......+ ++..-...++... + ...+....+..+++.+|+.+.+|...+. ||-||||||.|||
T Consensus 121 ~~~~v~dvVlSg~~~siG~y~~-~----------~~~~~~~~a~~lle~~g~~~la~r~~~~-----LS~Ge~rrvLiaR 184 (257)
T COG1119 121 VRETVRDVVLSGFFASIGIYQE-D----------LTAEDLAAAQWLLELLGAKHLADRPFGS-----LSQGEQRRVLIAR 184 (257)
T ss_pred cccccceeeeeccccccccccc-C----------CCHHHHHHHHHHHHHcchhhhccCchhh-----cCHhHHHHHHHHH
Confidence 0000000 0000000111110 0 0112234567789999999998887764 9999999999999
Q ss_pred HHcCCCcEEEEeCCChhhHHHHHHHHHHHHHH----cCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecC
Q 044321 324 MLVGPAQALFMDEISNSTTFQIVNSLRQFIHI----LEGTILISLLQPAPETYDLFDDIILISNGHIVYQGP 391 (521)
Q Consensus 324 aLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~----~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~ 391 (521)
||+.+|.+||||||++++|......+.+.+.+ .+.+.+++++|+.+++-..|+++++|++|+++++|.
T Consensus 185 ALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 185 ALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 99999999999999999988776555444433 246778888888999999999999999999999884
No 331
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.97 E-value=3.7e-30 Score=242.44 Aligned_cols=157 Identities=25% Similarity=0.381 Sum_probs=108.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEML 250 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~ 250 (521)
..+|+|+||+|++|++++|+|||||||||||++|+|+++|. .+..++...+. ...+..+ +...+..+.+...
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~--~~~~~~~---~~~~i~~~~q~~~-- 86 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT-SGRVRLDGADI--SQWDPNE---LGDHVGYLPQDDE-- 86 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC-CCeEEECCEEc--ccCCHHH---HHhheEEECCCCc--
Confidence 35999999999999999999999999999999999998775 33344433221 1122111 1111111111000
Q ss_pred HHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCc
Q 044321 251 AELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQ 330 (521)
Q Consensus 251 ~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~ 330 (521)
+.+ ..+.+. . ||||||||++||+||+.+|+
T Consensus 87 -----------~~~----------------------~tv~~~---------------l--LS~G~~qrv~la~al~~~p~ 116 (173)
T cd03246 87 -----------LFS----------------------GSIAEN---------------I--LSGGQRQRLGLARALYGNPR 116 (173)
T ss_pred -----------ccc----------------------CcHHHH---------------C--cCHHHHHHHHHHHHHhcCCC
Confidence 000 000110 0 99999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 331 ALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 331 iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
+|||||||+++|....+.+.+++... .++++++++|+.+.+ ..||++++|++|++
T Consensus 117 ~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 117 ILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETL-ASADRILVLEDGRV 173 (173)
T ss_pred EEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HhCCEEEEEECCCC
Confidence 99999999988887766666655433 345666667777666 68999999999974
No 332
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.97 E-value=2.3e-30 Score=270.60 Aligned_cols=191 Identities=24% Similarity=0.266 Sum_probs=155.9
Q ss_pred cCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccc
Q 044321 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVH 224 (521)
Q Consensus 165 ~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~ 224 (521)
++.++...+++||||+|++||+.+|+|.||||||||+++|.|.+.|+.+ +.+.|.|+..+
T Consensus 11 tK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~L 90 (501)
T COG3845 11 TKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFML 90 (501)
T ss_pred EEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeecccc
Confidence 3344577899999999999999999999999999999999999999742 23789999999
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++.+||.||+.++...... . ..+. .+....++++.+.+||+-..|.+|+
T Consensus 91 v~~lTV~ENiiLg~e~~~~-~-------------------~~~~-----------~~~~~~i~~l~~~yGl~vdp~~~V~ 139 (501)
T COG3845 91 VPTLTVAENIILGLEPSKG-G-------------------LIDR-----------RQARARIKELSERYGLPVDPDAKVA 139 (501)
T ss_pred ccccchhhhhhhcCccccc-c-------------------ccCH-----------HHHHHHHHHHHHHhCCCCCccceee
Confidence 9999999999987532100 0 0000 1123456788999999998898888
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
+ ||-||||||.|-+||..+|++|||||||+-++++-++.|.+.++.+ .+.+||.+||-..|+.++||++.||.
T Consensus 140 d-----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR 214 (501)
T COG3845 140 D-----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLR 214 (501)
T ss_pred c-----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEe
Confidence 6 9999999999999999999999999999988877666665555443 45666777899999999999999999
Q ss_pred CCEEEEecC
Q 044321 383 NGHIVYQGP 391 (521)
Q Consensus 383 ~G~iv~~G~ 391 (521)
.|+++..-+
T Consensus 215 ~Gkvvgt~~ 223 (501)
T COG3845 215 RGKVVGTVD 223 (501)
T ss_pred CCeEEeeec
Confidence 999976554
No 333
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.97 E-value=5.2e-30 Score=249.86 Aligned_cols=171 Identities=23% Similarity=0.343 Sum_probs=121.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCccccCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDVHIGE 227 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~~~~~ 227 (521)
..+|+|+||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+...+ .
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~-~ 92 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-N 92 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccc-c
Confidence 5699999999999999999999999999999999999865311 136778876655 6
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-------ccc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-------CAD 300 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-------~~d 300 (521)
.|++||+.+.... ... ....+++.++|.+ ..+
T Consensus 93 ~t~~~nl~~~~~~----~~~-------------------------------------~~~~~~~~~~l~~~~~~~~~~~~ 131 (218)
T cd03290 93 ATVEENITFGSPF----NKQ-------------------------------------RYKAVTDACSLQPDIDLLPFGDQ 131 (218)
T ss_pred ccHHHHHhhcCcC----CHH-------------------------------------HHHHHHHHhCcHHHHHhCcCccc
Confidence 7999998764211 000 0011222222221 112
Q ss_pred ccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHH--HHHHc--CCeEEEEEecChhHHHhhcC
Q 044321 301 TMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQ--FIHIL--EGTILISLLQPAPETYDLFD 376 (521)
Q Consensus 301 t~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~--l~~~~--~~t~ii~i~h~~~~~~~l~D 376 (521)
+..+ ..+..|||||||||+||+||+.+|++|||||||+++|....+.+.+ +.... .+.++|+++|+...+ ..||
T Consensus 132 ~~~~-~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~-~~~d 209 (218)
T cd03290 132 TEIG-ERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYL-PHAD 209 (218)
T ss_pred cCcc-cCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHH-hhCC
Confidence 2222 2355799999999999999999999999999999999887766554 33221 245556666777666 5799
Q ss_pred eEEEEeCCE
Q 044321 377 DIILISNGH 385 (521)
Q Consensus 377 ~VivL~~G~ 385 (521)
++++|++|.
T Consensus 210 ~i~~l~~G~ 218 (218)
T cd03290 210 WIIAMKDGS 218 (218)
T ss_pred EEEEecCCC
Confidence 999999884
No 334
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=7.1e-30 Score=282.51 Aligned_cols=174 Identities=23% Similarity=0.186 Sum_probs=141.0
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------ceeeecCCccccCCCCHHHHHHHHHHhccCchh
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------NRCDISQHDVHIGEMTVRETLAFSARCQGVGSR 246 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~ 246 (521)
.|+++||+|++||+++|+||||||||||+++|+|+++|+.+ ..+|++|+...++.+||+|++.+..... .
T Consensus 354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~--~-- 429 (590)
T PRK13409 354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDL--G-- 429 (590)
T ss_pred EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhc--C--
Confidence 59999999999999999999999999999999999987642 2378999877788999999987642100 0
Q ss_pred hHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHc
Q 044321 247 YEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLV 326 (521)
Q Consensus 247 ~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv 326 (521)
......++|+.+||.+..++.++ .|||||||||+||+||+
T Consensus 430 -----------------------------------~~~~~~~~L~~l~l~~~~~~~~~-----~LSGGe~QRvaiAraL~ 469 (590)
T PRK13409 430 -----------------------------------SSYYKSEIIKPLQLERLLDKNVK-----DLSGGELQRVAIAACLS 469 (590)
T ss_pred -----------------------------------hHHHHHHHHHHCCCHHHHhCCcc-----cCCHHHHHHHHHHHHHh
Confidence 00123568899999877777665 49999999999999999
Q ss_pred CCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecC
Q 044321 327 GPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQGP 391 (521)
Q Consensus 327 ~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~ 391 (521)
.+|++|||||||+++|......+.++++++ .+.++++++|+...+..+||+|++|+ |++...|.
T Consensus 470 ~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 470 RDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-Ccceeeee
Confidence 999999999999998887666666655443 35566667888889999999999996 58877775
No 335
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=3.7e-29 Score=279.97 Aligned_cols=213 Identities=21% Similarity=0.288 Sum_probs=145.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCc--------eeeecCCccccCCCCHHHHHHHHHHhcc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN--------RCDISQHDVHIGEMTVRETLAFSARCQG 242 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~--------~~~v~q~d~~~~~lTV~E~l~f~~~~~~ 242 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|++.|+.+. .+|++|........+|.+++..+....
T Consensus 16 ~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~- 94 (635)
T PRK11147 16 APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQ- 94 (635)
T ss_pred ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHH-
Confidence 46999999999999999999999999999999999998876321 134455433223357777654321100
Q ss_pred CchhhHHHHHHHHHHHhcCCCCC-CChHHHHHHH----hhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHH
Q 044321 243 VGSRYEMLAELTRREKAAGIKPD-PDIDVFMKAA----ATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRK 317 (521)
Q Consensus 243 ~~~~~~~~~~l~~~e~~~~i~~~-~~~~~~~~~~----~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQ 317 (521)
.........+... ....+. ..+..+.... ...+.+....+..+++.+||.. ++.+ ..|||||||
T Consensus 95 -~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~--~~~~-----~~LSgGekq 163 (635)
T PRK11147 95 -AEYLKRYHDISHL---VETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP--DAAL-----SSLSGGWLR 163 (635)
T ss_pred -HHHHHHHHHHHHH---hccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC--CCch-----hhcCHHHHH
Confidence 0000000000000 000000 0000000000 0111223456788999999963 4444 469999999
Q ss_pred HHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEE-EecCHhHHH
Q 044321 318 RVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIV-YQGPREYVL 396 (521)
Q Consensus 318 RvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv-~~G~~~~v~ 396 (521)
||+||++|+.+|++|||||||+++|......|.+++...++ +||+++|+...+..+||+|++|++|+++ |.|+.++.+
T Consensus 164 Rv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~-tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~ 242 (635)
T PRK11147 164 KAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQG-SIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQYL 242 (635)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHhcCeEEEEECCEEEEecCCHHHHH
Confidence 99999999999999999999999999999999999887765 5566778888999999999999999997 568877654
No 336
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.97 E-value=1.9e-29 Score=282.65 Aligned_cols=186 Identities=23% Similarity=0.292 Sum_probs=150.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCccccCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDVHIGE 227 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~~~~~ 227 (521)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|+.+ ..+|++|+..+++.
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 100 (648)
T PRK10535 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSH 100 (648)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCC
Confidence 4699999999999999999999999999999999999877421 23789998888888
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCcc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI 307 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 307 (521)
+|+.||+.+.....+... .+....+.++++.+||.+..|+.++
T Consensus 101 ~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~lgl~~~~~~~~~--- 143 (648)
T PRK10535 101 LTAAQNVEVPAVYAGLER----------------------------------KQRLLRAQELLQRLGLEDRVEYQPS--- 143 (648)
T ss_pred CCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhhhcCCcc---
Confidence 999999987543222100 0112245678889999887777665
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
.|||||+||++|||||+.+|++|||||||+++|....+.+.+++.+. .+.++++++|+.+.+ +.||++++|++|+
T Consensus 144 --~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~-~~~d~i~~l~~G~ 220 (648)
T PRK10535 144 --QLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVA-AQAERVIEIRDGE 220 (648)
T ss_pred --cCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH-HhCCEEEEEECCE
Confidence 59999999999999999999999999999999988888877776543 345566666776655 5799999999999
Q ss_pred EEEecCHhHHH
Q 044321 386 IVYQGPREYVL 396 (521)
Q Consensus 386 iv~~G~~~~v~ 396 (521)
+++.|+.++..
T Consensus 221 i~~~g~~~~~~ 231 (648)
T PRK10535 221 IVRNPPAQEKV 231 (648)
T ss_pred EEeecCccccc
Confidence 99999998774
No 337
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=1.7e-29 Score=274.17 Aligned_cols=213 Identities=25% Similarity=0.305 Sum_probs=163.4
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------ceeeecCCccccCCCCHHHHHHHHHHh
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------NRCDISQHDVHIGEMTVRETLAFSARC 240 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------~~~~v~q~d~~~~~lTV~E~l~f~~~~ 240 (521)
+.+.+|+|+|++|.+|+.+||||+||||||||||+|+|.+.|+.+ ..+|+.|+....+..||.+.+.-+...
T Consensus 14 g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~ 93 (530)
T COG0488 14 GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGE 93 (530)
T ss_pred CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHH
Confidence 566899999999999999999999999999999999999977642 248999999888889999988765321
Q ss_pred ccCchhhHHHHHHHHHHHhcCCCCCCChH---HH-HHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHH
Q 044321 241 QGVGSRYEMLAELTRREKAAGIKPDPDID---VF-MKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQR 316 (521)
Q Consensus 241 ~~~~~~~~~~~~l~~~e~~~~i~~~~~~~---~~-~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqr 316 (521)
. .++..++..... ..++++.. .+ .......+.+.+..+..+|..+|+... ++.+++ ||||||
T Consensus 94 ~-----~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~-----LSGG~r 159 (530)
T COG0488 94 L-----RELLAELEEAYA---LLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSS-----LSGGWR 159 (530)
T ss_pred H-----HHHHHHHHHHHH---hcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhh-----cCHHHH
Confidence 1 111111111110 01111110 00 011122335566778889999999877 776664 999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEE-EEecCHhHH
Q 044321 317 KRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHI-VYQGPREYV 395 (521)
Q Consensus 317 QRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~i-v~~G~~~~v 395 (521)
.||+||+||+.+|++|||||||+.+|.+.+.+|.+++....+ ++|+++|+....-+.|++|+-|+.|++ .|.|..+..
T Consensus 160 ~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~ 238 (530)
T COG0488 160 RRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSY 238 (530)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHHH
Confidence 999999999999999999999999999999999999987777 666678999999999999999999988 566877655
Q ss_pred H
Q 044321 396 L 396 (521)
Q Consensus 396 ~ 396 (521)
.
T Consensus 239 ~ 239 (530)
T COG0488 239 L 239 (530)
T ss_pred H
Confidence 4
No 338
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.97 E-value=2.1e-29 Score=277.59 Aligned_cols=235 Identities=16% Similarity=0.157 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCC-ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLP-TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLN 162 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~ 162 (521)
.+..+.+.+|+.++.+.+.+... . .....+ ...++|+|+++.++
T Consensus 289 ~~~~~~a~~ri~~l~~~~~~~~~-------~-~~~~~~~~~~i~~~~v~f~y~--------------------------- 333 (547)
T PRK10522 289 LLSAQVAFNKLNKLALAPYKAEF-------P-RPQAFPDWQTLELRNVTFAYQ--------------------------- 333 (547)
T ss_pred HHHHHHHHHHHHHHhcccccccc-------c-cccccCcCceEEEEEEEEEeC---------------------------
Confidence 45667777887777643322100 0 001112 13689999999862
Q ss_pred cccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhcc
Q 044321 163 ILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQG 242 (521)
Q Consensus 163 ~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~ 242 (521)
+...+|+|+||+|++|+.++|+||||||||||+++|+|+++|+. +...+.+.+. ...+..+ +...+..
T Consensus 334 ------~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~-G~i~~~g~~~--~~~~~~~---~~~~i~~ 401 (547)
T PRK10522 334 ------DNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQS-GEILLDGKPV--TAEQPED---YRKLFSA 401 (547)
T ss_pred ------CCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-eEEEECCEEC--CCCCHHH---HhhheEE
Confidence 11259999999999999999999999999999999999998763 2222322221 1111110 0001111
Q ss_pred CchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCc--cCCCCChHHHHHHH
Q 044321 243 VGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDE--ILRGISGGQRKRVT 320 (521)
Q Consensus 243 ~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~--~~r~LSGGqrQRva 320 (521)
+.+...++.. +..+. .++ .....+.++++.+++....+. ++. ....||||||||++
T Consensus 402 v~q~~~lf~~-ti~~n----~~~---------------~~~~~~~~~~~~~~l~~~~~~--~~~~~~G~~LSgGq~qRl~ 459 (547)
T PRK10522 402 VFTDFHLFDQ-LLGPE----GKP---------------ANPALVEKWLERLKMAHKLEL--EDGRISNLKLSKGQKKRLA 459 (547)
T ss_pred EecChhHHHH-hhccc----cCc---------------hHHHHHHHHHHHcCCchhhhc--cccCCCCCCCCHHHHHHHH
Confidence 1111111110 00000 000 001123456677777654332 221 13579999999999
Q ss_pred HHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHH----HcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 321 TGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIH----ILEGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 321 IAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~----~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
|||||+.+|++|+|||||+++|.+..+.+.+.+. ..+.|+|+++| .. +....||+|++|++|++++.
T Consensus 460 lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH-~~-~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 460 LLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISH-DD-HYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEe-ch-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999988877766654432 12456666554 43 56778999999999999876
No 339
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=3.6e-29 Score=281.88 Aligned_cols=185 Identities=20% Similarity=0.241 Sum_probs=142.3
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------ceeeecCCccccCCCCHHHHHHHHHHhc
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------NRCDISQHDVHIGEMTVRETLAFSARCQ 241 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------~~~~v~q~d~~~~~lTV~E~l~f~~~~~ 241 (521)
...+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+. +..+++.++..+.....
T Consensus 521 ~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~--~~~l~~~~~~~~~~~~~ 598 (718)
T PLN03073 521 GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHH--VDGLDLSSNPLLYMMRC 598 (718)
T ss_pred CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccc--cccCCcchhHHHHHHHh
Confidence 34699999999999999999999999999999999999887632 136788863 34455555533211000
Q ss_pred cCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-cccccccCccCCCCChHHHHHHH
Q 044321 242 GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CADTMVGDEILRGISGGQRKRVT 320 (521)
Q Consensus 242 ~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~~~r~LSGGqrQRva 320 (521)
.+.. ....+..+|+.+||.. ..+..+ ..|||||||||+
T Consensus 599 ---------------------~~~~---------------~~~~i~~~L~~~gl~~~~~~~~~-----~~LSgGqkqRva 637 (718)
T PLN03073 599 ---------------------FPGV---------------PEQKLRAHLGSFGVTGNLALQPM-----YTLSGGQKSRVA 637 (718)
T ss_pred ---------------------cCCC---------------CHHHHHHHHHHCCCChHHhcCCc-----cccCHHHHHHHH
Confidence 0000 0113456889999973 455554 459999999999
Q ss_pred HHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEE-EecCHhHHHHH
Q 044321 321 TGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIV-YQGPREYVLEF 398 (521)
Q Consensus 321 IAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv-~~G~~~~v~~~ 398 (521)
||++|+.+|++|||||||+++|......+.+.+...++ +||+++|+...+..+||++++|++|+++ +.|+.++..++
T Consensus 638 LAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~g-tvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~~~ 715 (718)
T PLN03073 638 FAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQG-GVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYKKT 715 (718)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCC-EEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHHHH
Confidence 99999999999999999999999988888877765555 5666778888999999999999999998 78888766543
No 340
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=2.1e-29 Score=241.76 Aligned_cols=161 Identities=19% Similarity=0.187 Sum_probs=121.5
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------ceeeecCCccccCCCCHHHHHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------NRCDISQHDVHIGEMTVRETLAF 236 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------~~~~v~q~d~~~~~lTV~E~l~f 236 (521)
.+++ +||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|....++.+||.||+.+
T Consensus 15 ~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~ 93 (195)
T PRK13541 15 NLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKF 93 (195)
T ss_pred EEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHH
Confidence 4555 9999999999999999999999999999999877532 12577777666778999999987
Q ss_pred HHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHH
Q 044321 237 SARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQR 316 (521)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqr 316 (521)
...... ....+..+++.+|+.+..++.++ .||||||
T Consensus 94 ~~~~~~---------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~ 129 (195)
T PRK13541 94 WSEIYN---------------------------------------SAETLYAAIHYFKLHDLLDEKCY-----SLSSGMQ 129 (195)
T ss_pred HHHhcc---------------------------------------cHHHHHHHHHHcCCHhhhccChh-----hCCHHHH
Confidence 532110 00124557788898876666554 5999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHH--cCCeEEEEEecChhHHHhhcCeE
Q 044321 317 KRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHI--LEGTILISLLQPAPETYDLFDDI 378 (521)
Q Consensus 317 QRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~--~~~t~ii~i~h~~~~~~~l~D~V 378 (521)
||++||+||+.+|++|||||||+++|....+.+.+++.. ..+.++++++|+...+. .+|.|
T Consensus 130 ~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~-~~~~~ 192 (195)
T PRK13541 130 KIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIK-SAQIL 192 (195)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccc-hhhee
Confidence 999999999999999999999999988887777776642 23455555667665444 35554
No 341
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.97 E-value=1.9e-29 Score=283.16 Aligned_cols=175 Identities=13% Similarity=0.207 Sum_probs=132.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------ceeeecCCccccCCCCHHHHHHHHHHhcc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------NRCDISQHDVHIGEMTVRETLAFSARCQG 242 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------~~~~v~q~d~~~~~lTV~E~l~f~~~~~~ 242 (521)
..+|+|+||+|++|++++|+||||||||||+++|+|++++..+ ..+|++|++.+++. |++||+.++.....
T Consensus 465 ~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~ 543 (659)
T TIGR00954 465 DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLG-TLRDQIIYPDSSED 543 (659)
T ss_pred CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCc-CHHHHHhcCCChhh
Confidence 3699999999999999999999999999999999999876532 24789998876665 99999987532110
Q ss_pred CchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccc------cccccCccCCCCChHHH
Q 044321 243 VGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCA------DTMVGDEILRGISGGQR 316 (521)
Q Consensus 243 ~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~------dt~vg~~~~r~LSGGqr 316 (521)
.. .++.. ...+..+++.+||.+.. ||..+ ....||||||
T Consensus 544 ~~------------------~~~~~---------------~~~i~~~l~~~~l~~~~~~~~g~~~~~~--~~~~LSgGqk 588 (659)
T TIGR00954 544 MK------------------RRGLS---------------DKDLEQILDNVQLTHILEREGGWSAVQD--WMDVLSGGEK 588 (659)
T ss_pred hh------------------ccCCC---------------HHHHHHHHHHcCCHHHHhhcCCcccccc--cccCCCHHHH
Confidence 00 00000 11234466667776543 33332 3457999999
Q ss_pred HHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 317 KRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 317 QRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
||++|||||+.+|++|||||||+++|.+..+.+.+.+++.+.|+|+ ++|+... .+.||++++|+.
T Consensus 589 QRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~-isH~~~~-~~~~d~il~l~~ 653 (659)
T TIGR00954 589 QRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFS-VSHRKSL-WKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEE-EeCchHH-HHhCCEEEEEeC
Confidence 9999999999999999999999999999999999888776555555 5565544 578999999973
No 342
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.5e-29 Score=237.89 Aligned_cols=155 Identities=27% Similarity=0.424 Sum_probs=108.5
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLA 251 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~ 251 (521)
.+|+|+||+|++|++++|+||||||||||+++|+|+++|. .+..++.+.+. ...... .+......+++.
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~-~G~i~~~g~~~--~~~~~~---~~~~~i~~~~~~----- 84 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT-SGEILIDGVDL--RDLDLE---SLRKNIAYVPQD----- 84 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CCEEEECCEEh--hhcCHH---HHHhhEEEEcCC-----
Confidence 5999999999999999999999999999999999998775 33344433221 111111 011111111110
Q ss_pred HHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcE
Q 044321 252 ELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQA 331 (521)
Q Consensus 252 ~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~i 331 (521)
+.. + . ..+.+. + |||||||||+||+||+.+|++
T Consensus 85 --------------~~~--~-~-------------~t~~e~---------------l--LS~G~~~rl~la~al~~~p~l 117 (171)
T cd03228 85 --------------PFL--F-S-------------GTIREN---------------I--LSGGQRQRIAIARALLRDPPI 117 (171)
T ss_pred --------------chh--c-c-------------chHHHH---------------h--hCHHHHHHHHHHHHHhcCCCE
Confidence 000 0 0 000000 0 999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 332 LFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 332 LlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
|||||||+++|......+.+++.+. .++++++++|+.+.+.. ||++++|++|+
T Consensus 118 lllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 118 LILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD-ADRIIVLDDGR 171 (171)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence 9999999999988877777776544 24566667788878766 99999999884
No 343
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.97 E-value=8.7e-30 Score=276.99 Aligned_cols=189 Identities=22% Similarity=0.241 Sum_probs=131.9
Q ss_pred CCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCcee---------------------eecCCcccc
Q 044321 167 RKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRC---------------------DISQHDVHI 225 (521)
Q Consensus 167 ~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~---------------------~v~q~d~~~ 225 (521)
.++.+.+|+||||+|++|++++|+|||||||||||++|+|+.++...+.. |++|+...+
T Consensus 269 ~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 348 (490)
T PRK10938 269 SYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLD 348 (490)
T ss_pred EECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhh
Confidence 33445799999999999999999999999999999999997654222333 333332211
Q ss_pred C--CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-ccccc
Q 044321 226 G--EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CADTM 302 (521)
Q Consensus 226 ~--~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~ 302 (521)
. ..++.+++.+..... ...... ...+....++.+++.+||.+ ..++.
T Consensus 349 ~~~~~~~~~~~~~~~~~~------------------~~~~~~------------~~~~~~~~~~~~l~~~~l~~~~~~~~ 398 (490)
T PRK10938 349 YRVSTSVRNVILSGFFDS------------------IGIYQA------------VSDRQQKLAQQWLDILGIDKRTADAP 398 (490)
T ss_pred cccCCcHHHHHHhccccc------------------cccccC------------CCHHHHHHHHHHHHHcCCchhhccCc
Confidence 1 123333222110000 000000 00011234677899999987 67766
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHh-hcCeE
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYD-LFDDI 378 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~-l~D~V 378 (521)
++ .|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. ++++||+++|+..++.+ +||++
T Consensus 399 ~~-----~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v 473 (490)
T PRK10938 399 FH-----SLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRL 473 (490)
T ss_pred hh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeE
Confidence 65 49999999999999999999999999999998887777766665443 44567777888888877 59999
Q ss_pred EEEeCCEEEEec
Q 044321 379 ILISNGHIVYQG 390 (521)
Q Consensus 379 ivL~~G~iv~~G 390 (521)
++|++|++++.-
T Consensus 474 ~~l~~G~i~~~~ 485 (490)
T PRK10938 474 EFVPDGDIYRYV 485 (490)
T ss_pred EEecCCceEEee
Confidence 999999998654
No 344
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.97 E-value=2.2e-29 Score=235.18 Aligned_cols=148 Identities=24% Similarity=0.345 Sum_probs=112.1
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEML 250 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~ 250 (521)
.++|+|+||+|++||+++|+|||||||||||++|+|+++|. .+..++...+. ...+..+.
T Consensus 13 ~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~v~~~g~~~--~~~~~~~~----------------- 72 (163)
T cd03216 13 VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD-SGEILVDGKEV--SFASPRDA----------------- 72 (163)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEEC--CcCCHHHH-----------------
Confidence 36999999999999999999999999999999999998775 33334433221 11111100
Q ss_pred HHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCc
Q 044321 251 AELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQ 330 (521)
Q Consensus 251 ~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~ 330 (521)
.-..++ +...||||||||++||+||+.+|+
T Consensus 73 --------------------------------------~~~~i~------------~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 73 --------------------------------------RRAGIA------------MVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred --------------------------------------HhcCeE------------EEEecCHHHHHHHHHHHHHhcCCC
Confidence 000001 111299999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 331 ALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 331 iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
+|||||||+++|....+.+.+++++. .++++++++|+.+++.++||++++|++|++++
T Consensus 103 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999998888777776666543 35566667888888889999999999999975
No 345
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=3.4e-29 Score=255.29 Aligned_cols=205 Identities=23% Similarity=0.284 Sum_probs=151.1
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----c------------------------eeeecC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----N------------------------RCDISQ 220 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----~------------------------~~~v~q 220 (521)
+...++++|||+|++||.++|+|.||||||-..+.++|+++.... + .+.|+|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 456799999999999999999999999999999999999875311 1 134444
Q ss_pred Ccc--ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcc
Q 044321 221 HDV--HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVC 298 (521)
Q Consensus 221 ~d~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~ 298 (521)
++. +-|-.|+...+.-..+++ ....+...+.++-++|+.+|+++-
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~H---------------------------------rg~~~~~Ar~r~lelL~~VgI~~p 147 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLH---------------------------------RGLSRAAARARALELLELVGIPEP 147 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHH---------------------------------hcccHHHHHHHHHHHHHHcCCCch
Confidence 432 122223322222221111 112233455677889999999875
Q ss_pred ccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHH----HHHHHHHHHHHHcCCeEEEEEecChhHHHhh
Q 044321 299 ADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTF----QIVNSLRQFIHILEGTILISLLQPAPETYDL 374 (521)
Q Consensus 299 ~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~----~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l 374 (521)
.... +.++..|||||||||.||.||+++|++||.||||+++|. +|.+.|+++-.++ +..++.+||+..-+.++
T Consensus 148 ~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~-gMa~lfITHDL~iVr~~ 224 (534)
T COG4172 148 EKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAEL-GMAILFITHDLGIVRKF 224 (534)
T ss_pred hhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHh-CcEEEEEeccHHHHHHh
Confidence 5433 467889999999999999999999999999999997665 5666666665544 45566678999999999
Q ss_pred cCeEEEEeCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHH
Q 044321 375 FDDIILISNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQ 417 (521)
Q Consensus 375 ~D~VivL~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~ 417 (521)
+|+|+||.+|+||++|+.+.+ |..|.+..+...+.
T Consensus 225 ADrV~VM~~G~ivE~~~t~~l--------F~~PqHpYTr~Ll~ 259 (534)
T COG4172 225 ADRVYVMQHGEIVETGTTETL--------FAAPQHPYTRKLLA 259 (534)
T ss_pred hhhEEEEeccEEeecCcHHHH--------hhCCCChHHHHHHh
Confidence 999999999999999999988 55677766655554
No 346
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.6e-29 Score=275.04 Aligned_cols=190 Identities=18% Similarity=0.247 Sum_probs=135.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCc--------------------eeeecCCc---cccCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN--------------------RCDISQHD---VHIGE 227 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~--------------------~~~v~q~d---~~~~~ 227 (521)
..+|+||||.|++|++++|+||||||||||+++|+|+++|+.+. .+|++|+. ..++.
T Consensus 261 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 340 (491)
T PRK10982 261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAY 340 (491)
T ss_pred CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccC
Confidence 35999999999999999999999999999999999998765210 13555542 23455
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDE 306 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~ 306 (521)
+|+.+|..+..-.... . ..++. ........+..+++.+++. ...++.++
T Consensus 341 ~~~~~~~~~~~~~~~~-~-------------~~~~~--------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 390 (491)
T PRK10982 341 LDIGFNSLISNIRNYK-N-------------KVGLL--------------DNSRMKSDTQWVIDSMRVKTPGHRTQIG-- 390 (491)
T ss_pred CcHHHheehhhhhhhc-c-------------ccccc--------------CcHHHHHHHHHHHHhcCccCCCcccccc--
Confidence 6665553221000000 0 00000 0001122456688889995 45566665
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
.|||||||||+||+||+.+|+||||||||+++|....+.+.+++..+ .+.+||+++|+.+++..+||++++|++|
T Consensus 391 ---~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g 467 (491)
T PRK10982 391 ---SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNG 467 (491)
T ss_pred ---cCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECC
Confidence 59999999999999999999999999999998887777666665332 2455666778889999999999999999
Q ss_pred EEEEecCHh
Q 044321 385 HIVYQGPRE 393 (521)
Q Consensus 385 ~iv~~G~~~ 393 (521)
+++..++.+
T Consensus 468 ~i~~~~~~~ 476 (491)
T PRK10982 468 LVAGIVDTK 476 (491)
T ss_pred EEEEEEccc
Confidence 999877653
No 347
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=8.3e-30 Score=232.98 Aligned_cols=176 Identities=22% Similarity=0.316 Sum_probs=140.1
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCc-------------------eeeecCCccccCCCC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN-------------------RCDISQHDVHIGEMT 229 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~-------------------~~~v~q~d~~~~~lT 229 (521)
+...||+++||.+.+||..+|.||||||||||+|+++.++.|+.+. ..|+.|.+.+|+ -|
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg-~t 92 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG-DT 92 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccc-cc
Confidence 4567999999999999999999999999999999999999887421 178889888776 59
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcc-ccccccCccC
Q 044321 230 VRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVC-ADTMVGDEIL 308 (521)
Q Consensus 230 V~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~-~dt~vg~~~~ 308 (521)
|.+|+.|.-+.+.. ++++ .....+|+.++|++. .++.+
T Consensus 93 VeDNlifP~~~r~r-------------------r~dr-----------------~aa~~llar~~l~~~~L~k~i----- 131 (223)
T COG4619 93 VEDNLIFPWQIRNR-------------------RPDR-----------------AAALDLLARFALPDSILTKNI----- 131 (223)
T ss_pred hhhccccchHHhcc-------------------CCCh-----------------HHHHHHHHHcCCchhhhcchh-----
Confidence 99999997543211 1211 123447888888764 34333
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
..||||||||++|+|-|..-|+||+|||||+++|....+.+..+++.. +...++-++|+..+..+.||+++-+..|+
T Consensus 132 t~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~ 211 (223)
T COG4619 132 TELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGH 211 (223)
T ss_pred hhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCc
Confidence 459999999999999999999999999999988877666666665543 45667778888889999999999999987
Q ss_pred E
Q 044321 386 I 386 (521)
Q Consensus 386 i 386 (521)
+
T Consensus 212 ~ 212 (223)
T COG4619 212 A 212 (223)
T ss_pred c
Confidence 5
No 348
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.96 E-value=1e-28 Score=272.62 Aligned_cols=248 Identities=15% Similarity=0.149 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCC---CC--CceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhh
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGI---SL--PTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFL 158 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~---~~--~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l 158 (521)
.+....+++|+.++++..++... ..+..+..+. .. ....++|+|+++.+...
T Consensus 294 ~~~a~~s~~ri~~ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~--------------------- 350 (555)
T TIGR01194 294 LAQAQIACQRLADFGERFNEPEP--ELELSDADNVLLLAHDKSVDSIELKDVHMNPKAP--------------------- 350 (555)
T ss_pred HHHHHHHHHHHHHHHhhhccccc--cccccccccccccccCCCCceEEEEEEEEEeCCC---------------------
Confidence 67778899999998753111000 0000000000 11 12469999999997310
Q ss_pred hhcccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHH
Q 044321 159 NSLNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSA 238 (521)
Q Consensus 159 ~~~~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~ 238 (521)
......+|+|+||+|++|++++|+||||||||||+++|+|+++|+. +..++.+.+. ...+..+ +..
T Consensus 351 --------~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~-G~i~~~g~~i--~~~~~~~---~~~ 416 (555)
T TIGR01194 351 --------EGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQE-GEILLDGAAV--SADSRDD---YRD 416 (555)
T ss_pred --------CCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC-cEEEECCEEC--CCCCHHH---HHh
Confidence 0012359999999999999999999999999999999999998863 2233322221 1111111 000
Q ss_pred HhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccc-cCccCCCCChHHHH
Q 044321 239 RCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMV-GDEILRGISGGQRK 317 (521)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v-g~~~~r~LSGGqrQ 317 (521)
....+.+...++... .++. ..++. ....+..+++.+++.+..+... |.+....|||||||
T Consensus 417 ~i~~v~q~~~lf~~t-i~~n---~~~~~---------------~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~q 477 (555)
T TIGR01194 417 LFSAIFADFHLFDDL-IGPD---EGEHA---------------SLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQK 477 (555)
T ss_pred hCcEEccChhhhhhh-hhcc---cccch---------------hHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHH
Confidence 111111111111110 0000 00100 0112344566666654332221 11112469999999
Q ss_pred HHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHH-HHH---HcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 318 RVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQ-FIH---ILEGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 318 RvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~-l~~---~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
|++|||||+.+|++|||||||+++|.+..+.+.+ +.+ ..++|+|+++ |+. ...+.||+|++|++|++++.
T Consensus 478 RlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiis-H~~-~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 478 RLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIIS-HDD-QYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEe-ccH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999888777754 322 2245555554 554 46679999999999999854
No 349
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.96 E-value=1e-28 Score=298.45 Aligned_cols=238 Identities=18% Similarity=0.196 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCC-CceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISL-PTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLN 162 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~ 162 (521)
.++...+++|+.+.++.+.+.. ...+...... ....++++|+++.+..
T Consensus 600 ~~~a~~s~~Ri~~~l~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~-------------------------- 648 (1522)
T TIGR00957 600 IVQASVSLKRLRIFLSHEELEP-----DSIERRTIKPGEGNSITVHNATFTWAR-------------------------- 648 (1522)
T ss_pred HHHHHHHHHHHHHHHcCccccc-----ccccccccCCCCCCcEEEEEeEEEcCC--------------------------
Confidence 6778889999999887654310 0000000111 1125889999987520
Q ss_pred cccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------ceeeecCCccccCCCCHHHHHHH
Q 044321 163 ILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------NRCDISQHDVHIGEMTVRETLAF 236 (521)
Q Consensus 163 ~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------~~~~v~q~d~~~~~lTV~E~l~f 236 (521)
...++|+|+||+|++|++++|+|||||||||||++|+|.++|..+ ..+|++|++.+ +..||+||+.|
T Consensus 649 ------~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l-~~~Ti~eNI~~ 721 (1522)
T TIGR00957 649 ------DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWI-QNDSLRENILF 721 (1522)
T ss_pred ------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccc-cCCcHHHHhhc
Confidence 123599999999999999999999999999999999999987642 23899998765 56899999998
Q ss_pred HHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcC-CCccccccccCccCCCCChHH
Q 044321 237 SARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILG-LDVCADTMVGDEILRGISGGQ 315 (521)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg-L~~~~dt~vg~~~~r~LSGGq 315 (521)
+.... . + . .+...+++ .+.+.++ +++..+|.+|+ .+..|||||
T Consensus 722 g~~~~---~--~---~---------------~~~~~~~~------------~l~~~l~~~~~g~~t~ig~-~g~~LSGGQ 765 (1522)
T TIGR00957 722 GKALN---E--K---Y---------------YQQVLEAC------------ALLPDLEILPSGDRTEIGE-KGVNLSGGQ 765 (1522)
T ss_pred CCccC---H--H---H---------------HHHHHHHh------------CCHHHHHhcCCCCCceecC-CCCCCCHHH
Confidence 63210 0 0 0 00001111 0112222 45567888886 466899999
Q ss_pred HHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHH----cCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecC
Q 044321 316 RKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHI----LEGTILISLLQPAPETYDLFDDIILISNGHIVYQGP 391 (521)
Q Consensus 316 rQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~----~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~ 391 (521)
||||+|||||+.+|+++||||||+++|....+.+.+.+.. ..+.++|+++|+...+ ..||+|++|++|++++.|+
T Consensus 766 kqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l-~~~D~ii~l~~G~i~~~g~ 844 (1522)
T TIGR00957 766 KQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYL-PQVDVIIVMSGGKISEMGS 844 (1522)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhh-hhCCEEEEecCCeEEeeCC
Confidence 9999999999999999999999999998887777665531 2234444455665554 5599999999999999999
Q ss_pred HhHHH
Q 044321 392 REYVL 396 (521)
Q Consensus 392 ~~~v~ 396 (521)
++++.
T Consensus 845 ~~~l~ 849 (1522)
T TIGR00957 845 YQELL 849 (1522)
T ss_pred HHHHH
Confidence 98885
No 350
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.96 E-value=2.7e-29 Score=251.12 Aligned_cols=196 Identities=20% Similarity=0.207 Sum_probs=123.8
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeec-CCc---cccCCCCHHHHHHHHHH----hccC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDIS-QHD---VHIGEMTVRETLAFSAR----CQGV 243 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~-q~d---~~~~~lTV~E~l~f~~~----~~~~ 243 (521)
.+|+|+| .+.+|++++|+|||||||||||++|+|+++|+.+ ..... ..+ ..+....+.....-..+ ...+
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G-~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~ 92 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLG-KFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVK 92 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCc-eEeeccccchhhhhccCchhhhhhHHhhhcccceeee
Confidence 5999999 4999999999999999999999999999988632 22100 000 01111111110000000 0000
Q ss_pred chhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHH
Q 044321 244 GSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGE 323 (521)
Q Consensus 244 ~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAr 323 (521)
.+....... ...+ .+... .........+..+++.+||.+..+..+. .|||||||||+||+
T Consensus 93 ~~~~~~~~~-~~~~------------~i~~~--l~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~lar 152 (255)
T cd03236 93 PQYVDLIPK-AVKG------------KVGEL--LKKKDERGKLDELVDQLELRHVLDRNID-----QLSGGELQRVAIAA 152 (255)
T ss_pred cchhccCch-HHHH------------HHHHH--hchhHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHH
Confidence 000000000 0000 00000 0111223456778999999877766554 59999999999999
Q ss_pred HHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 324 MLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 324 aLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
+|+.+|+++||||||+++|....+.+.+++++. .+.+|++++|+...+..+||+|++| +|++++.|
T Consensus 153 al~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l-~~~~~~~~ 220 (255)
T cd03236 153 ALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCL-YGEPGAYG 220 (255)
T ss_pred HHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE-CCCCCcce
Confidence 999999999999999998887665555554432 2456667788888888899999999 56676655
No 351
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.96 E-value=2.1e-28 Score=294.99 Aligned_cols=189 Identities=19% Similarity=0.264 Sum_probs=142.1
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------ceeeecCCccccCCCCHHHHHHHHHHhccCc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------NRCDISQHDVHIGEMTVRETLAFSARCQGVG 244 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~ 244 (521)
+++|+||||+|++|++++|+|||||||||||++|+|.++|..+ ..+|++|++.+++ .||+||+.|+.... .
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~-~Ti~eNI~~g~~~~--~ 515 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMP-GTIKDNIIFGLSYD--E 515 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCC-ccHHHHHHhccccc--h
Confidence 4699999999999999999999999999999999999988643 2489999987766 59999999863210 0
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHH
Q 044321 245 SRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEM 324 (521)
Q Consensus 245 ~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAra 324 (521)
.++ ....+++. .+..++. ++...+|.+|+. +..|||||||||+||||
T Consensus 516 ~~~---------------------~~~~~~~~---------L~~~l~~--l~~g~~t~vg~~-g~~LSgGqkqRi~lARA 562 (1490)
T TIGR01271 516 YRY---------------------TSVIKACQ---------LEEDIAL--FPEKDKTVLGEG-GITLSGGQRARISLARA 562 (1490)
T ss_pred HHH---------------------HHHHHHHh---------HHHHHHh--ccccccccccCc-CCCcCHHHHHHHHHHHH
Confidence 000 00011110 1122222 344557888864 67899999999999999
Q ss_pred HcCCCcEEEEeCCChhhHHHHHHHHHHH-HHH-cCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 325 LVGPAQALFMDEISNSTTFQIVNSLRQF-IHI-LEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 325 Lv~~P~iLlLDEPTs~~~~~i~~~L~~l-~~~-~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
|+.+|+++||||||+++|....+.+.+. +.. .+++++|+++|+...+ ..||+|++|++|++++.|+++++.
T Consensus 563 l~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~-~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 563 VYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHL-KKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHH-HhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999998887777653 222 2344555556666555 469999999999999999998885
No 352
>PLN03073 ABC transporter F family; Provisional
Probab=99.96 E-value=4.7e-28 Score=272.85 Aligned_cols=220 Identities=18% Similarity=0.162 Sum_probs=146.0
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC---CCCCCceeeecCCccccCCCCHHHHHHHHHH--hccCc
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL---DSSLKNRCDISQHDVHIGEMTVRETLAFSAR--CQGVG 244 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l---~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~--~~~~~ 244 (521)
.+.+|+|+||+|.+|++++|+|||||||||||++|+|.. .|+.....|+.|+. .....|+.+.+.-... .....
T Consensus 189 ~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~-~g~~~t~~~~v~~~~~~~~~~~~ 267 (718)
T PLN03073 189 GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEV-VGDDTTALQCVLNTDIERTQLLE 267 (718)
T ss_pred CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccC-CCCCCCHHHHHHHhhHHHHHHHH
Confidence 346999999999999999999999999999999999964 23323345777753 2345676554321100 00000
Q ss_pred hhhHHHHHHHHHHH------hcCC--C--CCCCh-HHHHH----HHhhhchhhhhHHHHHHHHcCCC-ccccccccCccC
Q 044321 245 SRYEMLAELTRREK------AAGI--K--PDPDI-DVFMK----AAATEGQEVSVITDYILKILGLD-VCADTMVGDEIL 308 (521)
Q Consensus 245 ~~~~~~~~l~~~e~------~~~i--~--~~~~~-~~~~~----~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~~ 308 (521)
....+......... .... . +.... ..+.. .....+...+.++..+|..+||. +..++.++
T Consensus 268 ~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~---- 343 (718)
T PLN03073 268 EEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATK---- 343 (718)
T ss_pred HHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchh----
Confidence 00000000000000 0000 0 00000 00101 11112334556778899999996 34555554
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEE-
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIV- 387 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv- 387 (521)
.|||||||||+||++|+.+|++|||||||+++|......|.+++...++| +|+++|+...+..+||+|++|++|+++
T Consensus 344 -~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~t-viivsHd~~~l~~~~d~i~~l~~g~i~~ 421 (718)
T PLN03073 344 -TFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKT-FIVVSHAREFLNTVVTDILHLHGQKLVT 421 (718)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCE-EEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 59999999999999999999999999999999999999999998877655 555678888889999999999999996
Q ss_pred EecCHhHHH
Q 044321 388 YQGPREYVL 396 (521)
Q Consensus 388 ~~G~~~~v~ 396 (521)
|.|+.+.+.
T Consensus 422 ~~g~~~~~~ 430 (718)
T PLN03073 422 YKGDYDTFE 430 (718)
T ss_pred eCCCHHHHH
Confidence 778776543
No 353
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.96 E-value=1.9e-28 Score=224.40 Aligned_cols=131 Identities=24% Similarity=0.391 Sum_probs=108.3
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLA 251 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~ 251 (521)
.+|+++||++++||+++|+||||||||||+++|+|+++|. .+..++... ..+.
T Consensus 14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~~~----------------~~i~---------- 66 (144)
T cd03221 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD-EGIVTWGST----------------VKIG---------- 66 (144)
T ss_pred eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC-ceEEEECCe----------------EEEE----------
Confidence 6999999999999999999999999999999999998765 223333220 0000
Q ss_pred HHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcE
Q 044321 252 ELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQA 331 (521)
Q Consensus 252 ~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~i 331 (521)
+...||+||+||++|||||+.+|++
T Consensus 67 -------------------------------------------------------~~~~lS~G~~~rv~laral~~~p~i 91 (144)
T cd03221 67 -------------------------------------------------------YFEQLSGGEKMRLALAKLLLENPNL 91 (144)
T ss_pred -------------------------------------------------------EEccCCHHHHHHHHHHHHHhcCCCE
Confidence 0112999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 332 LFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 332 LlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
++|||||+++|......+.+++.+.+. ++++++|+.+++..+||++++|++|+
T Consensus 92 lllDEP~~~LD~~~~~~l~~~l~~~~~-til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 92 LLLDEPTNHLDLESIEALEEALKEYPG-TVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHcCC-EEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999888877654 56667788888889999999999985
No 354
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=4e-28 Score=229.48 Aligned_cols=154 Identities=23% Similarity=0.231 Sum_probs=109.0
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEM 249 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~ 249 (521)
.+++|+|+||+|++|++++|+|||||||||||++|.+ . .+...+......+. ++.+.| +.
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~--~---~G~v~~~~~~~~~~----~~~~~~------~~----- 66 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY--A---SGKARLISFLPKFS----RNKLIF------ID----- 66 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh--c---CCcEEECCcccccc----cccEEE------Eh-----
Confidence 4579999999999999999999999999999999964 1 11122211100000 000000 00
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-cccccccCccCCCCChHHHHHHHHHHHHcCC
Q 044321 250 LAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CADTMVGDEILRGISGGQRKRVTTGEMLVGP 328 (521)
Q Consensus 250 ~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~ 328 (521)
+ .++++.++|.. ..+..+ +.||||||||++||+||+.+
T Consensus 67 ------------------------------q------~~~l~~~~L~~~~~~~~~-----~~LSgGq~qrl~laral~~~ 105 (176)
T cd03238 67 ------------------------------Q------LQFLIDVGLGYLTLGQKL-----STLSGGELQRVKLASELFSE 105 (176)
T ss_pred ------------------------------H------HHHHHHcCCCccccCCCc-----CcCCHHHHHHHHHHHHHhhC
Confidence 0 23577888865 355444 46999999999999999999
Q ss_pred --CcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 329 --AQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 329 --P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
|++|||||||+++|....+.+.+.+.+. .+.+||+++|+...+ ..||++++|.+|+
T Consensus 106 ~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~-~~~d~i~~l~~g~ 165 (176)
T cd03238 106 PPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVL-SSADWIIDFGPGS 165 (176)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HhCCEEEEECCCC
Confidence 9999999999998888777776665543 345566667777665 6899999996643
No 355
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.95 E-value=2.3e-28 Score=281.71 Aligned_cols=189 Identities=24% Similarity=0.337 Sum_probs=165.1
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCCCHHH
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~lTV~E 232 (521)
+++++|+.|++||+.+++|||||||||++++|+|...|+.+ .-+|+||.|.+++.+|.+|
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rE 659 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGRE 659 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHH
Confidence 99999999999999999999999999999999999887631 1289999999999999999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
++.+.++++|.... +....++.+++.+||.+++++.++. +|
T Consensus 660 hL~~~arlrG~~~~----------------------------------di~~~v~~ll~~~~L~~~~~~~~~~-----yS 700 (885)
T KOG0059|consen 660 HLEFYARLRGLPRS----------------------------------DIGSAIEKLLRLVGLGPYANKQVRT-----YS 700 (885)
T ss_pred HHHHHHHHcCCChh----------------------------------HHHHHHHHHHHHcCChhhhccchhh-----CC
Confidence 99999999886421 1223467899999999999988765 99
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||+|+|+++|.||+++|++++|||||+++|+...+.+-++++.. ++..+|.++|.++|+..+|||+.+|.+|++...|
T Consensus 701 gG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciG 780 (885)
T KOG0059|consen 701 GGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIG 780 (885)
T ss_pred CcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEec
Confidence 99999999999999999999999999999987777766665543 2337777889999999999999999999999999
Q ss_pred CHhHHHHHHH
Q 044321 391 PREYVLEFFK 400 (521)
Q Consensus 391 ~~~~v~~~f~ 400 (521)
+++++...|.
T Consensus 781 s~q~LKsrfG 790 (885)
T KOG0059|consen 781 SPQELKSRYG 790 (885)
T ss_pred ChHHHHhhcC
Confidence 9999987764
No 356
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.95 E-value=1.5e-27 Score=225.88 Aligned_cols=146 Identities=21% Similarity=0.221 Sum_probs=110.9
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhH
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYE 248 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~ 248 (521)
+++.+++++ ++|++|++++|+||||||||||+++|+|+++|+. +...+...+ +.+ ..+
T Consensus 11 ~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~-G~i~~~g~~-----------i~~------~~q--- 68 (177)
T cd03222 11 GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNG-DNDEWDGIT-----------PVY------KPQ--- 68 (177)
T ss_pred CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCC-cEEEECCEE-----------EEE------Ecc---
Confidence 456789885 9999999999999999999999999999988753 223332211 000 000
Q ss_pred HHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCC
Q 044321 249 MLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGP 328 (521)
Q Consensus 249 ~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~ 328 (521)
+ ..|||||||||+||++|+.+
T Consensus 69 ---------------------------------------------------~--------~~LSgGq~qrv~laral~~~ 89 (177)
T cd03222 69 ---------------------------------------------------Y--------IDLSGGELQRVAIAAALLRN 89 (177)
T ss_pred ---------------------------------------------------c--------CCCCHHHHHHHHHHHHHhcC
Confidence 0 01999999999999999999
Q ss_pred CcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe--cCHhHH
Q 044321 329 AQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQ--GPREYV 395 (521)
Q Consensus 329 P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~--G~~~~v 395 (521)
|++++|||||+++|....+.+.+++.+. ++.++++++|+...+..+||++++|+++-.++. |++...
T Consensus 90 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 161 (177)
T cd03222 90 ATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGT 161 (177)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcch
Confidence 9999999999998888777666655432 335666778888888899999999998877655 555433
No 357
>PTZ00243 ABC transporter; Provisional
Probab=99.95 E-value=2e-27 Score=287.04 Aligned_cols=190 Identities=20% Similarity=0.276 Sum_probs=138.6
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------ceeeecCCccccCCCCHHHHHHHHHHhccC
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------NRCDISQHDVHIGEMTVRETLAFSARCQGV 243 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~ 243 (521)
.+.+|+||||+|++|++++|+|||||||||||++|+|.++|..+ ..+|++|++.++ ..||+||+.|+...
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~-~~Tv~enI~~~~~~--- 747 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIM-NATVRGNILFFDEE--- 747 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccC-CCcHHHHHHcCChh---
Confidence 45799999999999999999999999999999999999987632 248999987654 68999999985210
Q ss_pred chhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHH
Q 044321 244 GSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGE 323 (521)
Q Consensus 244 ~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAr 323 (521)
..+ .. +...+.+ ..+..++.+ ++..+|.+|+ .+..|||||||||+|||
T Consensus 748 --~~~---~~---------------~~~~~~~---------~l~~~l~~l--~~g~~t~i~~-~g~~LSGGQkqRvaLAR 795 (1560)
T PTZ00243 748 --DAA---RL---------------ADAVRVS---------QLEADLAQL--GGGLETEIGE-KGVNLSGGQKARVSLAR 795 (1560)
T ss_pred --hHH---HH---------------HHHHHHh---------hhHHHHHHh--hccchHHhcC-CCCCCCHHHHHHHHHHH
Confidence 000 00 0000000 112233433 2233556664 45679999999999999
Q ss_pred HHcCCCcEEEEeCCChhhHHHHHHHHHH-HH-HHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 324 MLVGPAQALFMDEISNSTTFQIVNSLRQ-FI-HILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 324 aLv~~P~iLlLDEPTs~~~~~i~~~L~~-l~-~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
||+.+|++|||||||+++|....+.+.+ ++ ....+.++|+++|+...+ ..||+|++|++|++++.|+.+++.
T Consensus 796 Al~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~-~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 796 AVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVV-PRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHH-HhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999876555543 21 222344455556666555 679999999999999999998875
No 358
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=5.8e-27 Score=272.49 Aligned_cols=239 Identities=21% Similarity=0.273 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
.-+...+++|+.+.+..+.... +...+...+.+...|.++|.+++=+
T Consensus 483 ~vqa~VS~~Ri~~fl~~~e~~~-----~~~~~~~~~~~~~~i~i~~~sfsW~---------------------------- 529 (1381)
T KOG0054|consen 483 LVQAKVSLKRLKEFLLSEELDP-----DSVERSPDEAGENAIEIKNGSFSWD---------------------------- 529 (1381)
T ss_pred HHHHHHHHHHHHHHhcCcccCc-----cccccCCCCCCCceEEEeeeeEecC----------------------------
Confidence 5567888899988876654321 0111123334445688888887621
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC------CceeeecCCccccCCCCHHHHHHHH
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL------KNRCDISQHDVHIGEMTVRETLAFS 237 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~------~~~~~v~q~d~~~~~lTV~E~l~f~ 237 (521)
.......|+||||+|++|+++||+||-|||||+||.+|.|.++... +..+|++|.+.. .+.||+|||.|+
T Consensus 530 ---~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI-~ngTvreNILFG 605 (1381)
T KOG0054|consen 530 ---SESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWI-QNGTVRENILFG 605 (1381)
T ss_pred ---CCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHh-hCCcHHHhhhcC
Confidence 0122348999999999999999999999999999999999887642 234899998764 568999999998
Q ss_pred HHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHH
Q 044321 238 ARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRK 317 (521)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQ 317 (521)
.... .++| +...++++... | ++ -|+.+-.|.||++. -+|||||||
T Consensus 606 ~~~d--~~rY---------------------~~Vi~aC~L~~-------D--le--~Lp~GD~TeIGErG-inLSGGQKq 650 (1381)
T KOG0054|consen 606 SPYD--EERY---------------------DKVIKACALKK-------D--LE--ILPFGDLTEIGERG-INLSGGQKQ 650 (1381)
T ss_pred cccc--HHHH---------------------HHHHHHccCHh-------H--Hh--hcCCCCcceecCCc-cCCcHhHHH
Confidence 4321 0011 11222222211 0 11 25667789999854 469999999
Q ss_pred HHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHH--c-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhH
Q 044321 318 RVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHI--L-EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREY 394 (521)
Q Consensus 318 RvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~--~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~ 394 (521)
|+++|||+..+++|++||.|.+++|..+-+.|.+-+-. + ++|+|+++ | ..+....||.|++|++|+|+..|+.++
T Consensus 651 RIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVT-H-ql~~L~~ad~Iivl~~G~I~~~Gty~e 728 (1381)
T KOG0054|consen 651 RISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVT-H-QLQFLPHADQIIVLKDGKIVESGTYEE 728 (1381)
T ss_pred HHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEe-C-chhhhhhCCEEEEecCCeEecccCHHH
Confidence 99999999999999999999998888766655443221 2 35555554 4 346778999999999999999999999
Q ss_pred HH
Q 044321 395 VL 396 (521)
Q Consensus 395 v~ 396 (521)
+.
T Consensus 729 l~ 730 (1381)
T KOG0054|consen 729 LL 730 (1381)
T ss_pred HH
Confidence 97
No 359
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=1.8e-27 Score=225.70 Aligned_cols=188 Identities=23% Similarity=0.310 Sum_probs=138.1
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCce-------------------eeecCCcc--ccCC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNR-------------------CDISQHDV--HIGE 227 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~-------------------~~v~q~d~--~~~~ 227 (521)
..+.||+++|++|..|+++.|+|.||||||||+++|+|.+.|+.+.. +-|+|++. ..+.
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~ 96 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE 96 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccc
Confidence 34679999999999999999999999999999999999988863210 34566543 5789
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHH--HcCCCccccccccC
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILK--ILGLDVCADTMVGD 305 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~--~lgL~~~~dt~vg~ 305 (521)
||+.||+..+..- |- +..+...+..+. .+. ...-++ -+||++..++.+|-
T Consensus 97 lTieENl~la~~R-g~--~rgl~~~ln~~~----------~~~---------------f~~~l~~l~lgLenrL~~~igl 148 (263)
T COG1101 97 LTIEENLALAESR-GK--KRGLSSALNERR----------RSS---------------FRERLARLGLGLENRLSDRIGL 148 (263)
T ss_pred ccHHHHHHHHHhc-Cc--ccccchhhhHHH----------HHH---------------HHHHHhhcccchhhhhcChhhh
Confidence 9999999987532 11 000000000000 000 011222 35778888888886
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHH----HHHHcCCeEEEEEecChhHHHhhcCeEEEE
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQ----FIHILEGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~----l~~~~~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
|||||||-|+++.|.+++|+||||||-|+++|+.....+.+ ++.+.+-|+++ +||++..+.++.+|.|+|
T Consensus 149 -----LSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlM-VTHnm~~Al~yG~RlImL 222 (263)
T COG1101 149 -----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLM-VTHNMEDALDYGNRLIML 222 (263)
T ss_pred -----ccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEE-EeccHHHHHhhCCeEEEE
Confidence 99999999999999999999999999999877765555544 44443455555 568899999999999999
Q ss_pred eCCEEEEec
Q 044321 382 SNGHIVYQG 390 (521)
Q Consensus 382 ~~G~iv~~G 390 (521)
++|+||.+-
T Consensus 223 h~G~IvlDv 231 (263)
T COG1101 223 HSGKIVLDV 231 (263)
T ss_pred eCCeEEEEc
Confidence 999999763
No 360
>PRK13409 putative ATPase RIL; Provisional
Probab=99.95 E-value=1.5e-27 Score=264.15 Aligned_cols=192 Identities=20% Similarity=0.274 Sum_probs=124.4
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecC--Ccc--ccCCCCHHHHHH-HHH---Hhcc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQ--HDV--HIGEMTVRETLA-FSA---RCQG 242 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q--~d~--~~~~lTV~E~l~-f~~---~~~~ 242 (521)
..+|++++ .+++|++++|+|||||||||||++|+|++.|+.+. ..... +.. .+....+..... ... .+..
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~-i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~ 164 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGD-YEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVH 164 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCcc-ccCCCcHHHHHHHhCChHHHHHHHHHhccCcceee
Confidence 46999999 99999999999999999999999999999886321 11000 000 000000100000 000 0000
Q ss_pred CchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHH
Q 044321 243 VGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTG 322 (521)
Q Consensus 243 ~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIA 322 (521)
..+.....+.+ . ......... ..+....++++++.+||.+..++.+++ |||||||||+||
T Consensus 165 ~~q~~~~~p~~---------~-~~tv~e~l~-----~~~~~~~~~~~l~~l~l~~~~~~~~~~-----LSgGe~qrv~ia 224 (590)
T PRK13409 165 KPQYVDLIPKV---------F-KGKVRELLK-----KVDERGKLDEVVERLGLENILDRDISE-----LSGGELQRVAIA 224 (590)
T ss_pred cccchhhhhhh---------h-cchHHHHHH-----hhhHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHH
Confidence 00000000000 0 001111110 011234567899999999888877764 999999999999
Q ss_pred HHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 323 EMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 323 raLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
+||+.+|++|||||||+++|......+.++++.+ .+.+||+++|+...+..++|+|++|++|
T Consensus 225 ~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 225 AALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999988777777766554 1456666788889999999999999863
No 361
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=5.7e-27 Score=230.30 Aligned_cols=97 Identities=22% Similarity=0.226 Sum_probs=76.1
Q ss_pred HHHHHcCCCc-cccccccCccCCCCChHHHHHHHHHHHHcCCC--cEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEE
Q 044321 288 YILKILGLDV-CADTMVGDEILRGISGGQRKRVTTGEMLVGPA--QALFMDEISNSTTFQIVNSLRQFIHIL--EGTILI 362 (521)
Q Consensus 288 ~iL~~lgL~~-~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P--~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii 362 (521)
.+|+.+||.. ..+..+ ..|||||||||+||++|+.+| ++|||||||+++|....+.+.+++... .+.+++
T Consensus 119 ~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii 193 (226)
T cd03270 119 GFLVDVGLGYLTLSRSA-----PTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVL 193 (226)
T ss_pred HHHHHCCCCcccccCcc-----CcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 4688899975 355554 469999999999999999998 599999999988876666665554332 244555
Q ss_pred EEecChhHHHhhcCeEEEE------eCCEEEEec
Q 044321 363 SLLQPAPETYDLFDDIILI------SNGHIVYQG 390 (521)
Q Consensus 363 ~i~h~~~~~~~l~D~VivL------~~G~iv~~G 390 (521)
+++|+...+ .+||+|++| ++|+||++|
T Consensus 194 ~itH~~~~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 194 VVEHDEDTI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred EEEeCHHHH-HhCCEEEEeCCCccccCCEEEecC
Confidence 566776665 699999999 999999987
No 362
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.7e-27 Score=220.49 Aligned_cols=160 Identities=29% Similarity=0.371 Sum_probs=127.8
Q ss_pred CCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCce------------------eeecCCccccCCCC
Q 044321 168 KKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNR------------------CDISQHDVHIGEMT 229 (521)
Q Consensus 168 ~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~------------------~~v~q~d~~~~~lT 229 (521)
.+..+++.++||++.+||++-|.|||||||||||++|+|++.|..+.. -|+.-++-.-+++|
T Consensus 12 R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLT 91 (209)
T COG4133 12 RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELT 91 (209)
T ss_pred cCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhh
Confidence 456789999999999999999999999999999999999998863211 12222333456789
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCC
Q 044321 230 VRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILR 309 (521)
Q Consensus 230 V~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 309 (521)
|.||+.|-..+.+... ...+.+.++.+||....|.+++.
T Consensus 92 a~ENL~F~~~~~~~~~-------------------------------------~~~i~~Al~~vgL~g~~dlp~~~---- 130 (209)
T COG4133 92 ALENLHFWQRFHGSGN-------------------------------------AATIWEALAQVGLAGLEDLPVGQ---- 130 (209)
T ss_pred HHHHHHHHHHHhCCCc-------------------------------------hhhHHHHHHHcCcccccccchhh----
Confidence 9999999765443210 11245578899999999988875
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChh
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAP 369 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~ 369 (521)
||-||||||+|||.++.++++.|||||++++|.+-+..|..++... ++.|+.++||+.+
T Consensus 131 -LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 131 -LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred -cchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 9999999999999999999999999999999999888888776432 6777788887764
No 363
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=6.1e-27 Score=215.29 Aligned_cols=220 Identities=21% Similarity=0.261 Sum_probs=141.9
Q ss_pred cCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCc--cccCCCCHHHHHHHHH-Hhc
Q 044321 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHD--VHIGEMTVRETLAFSA-RCQ 241 (521)
Q Consensus 165 ~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d--~~~~~lTV~E~l~f~~-~~~ 241 (521)
++.++.....+||||.+.|||+.+|+|.|||||||||++|++.+.|+.....|..... .-+..|+-.|--.+.. ...
T Consensus 13 sk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG 92 (258)
T COG4107 13 SKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWG 92 (258)
T ss_pred hhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccc
Confidence 4445666789999999999999999999999999999999999999865555544322 1122222222111000 000
Q ss_pred cCchhhHHHHHHHHHHHhcCCCCCCChH-HHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHH
Q 044321 242 GVGSRYEMLAELTRREKAAGIKPDPDID-VFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVT 320 (521)
Q Consensus 242 ~~~~~~~~~~~l~~~e~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRva 320 (521)
.+.+... ..+ ........++. ..|..-...--.+......+|+.+.++... + ++.++.+||||+||+.
T Consensus 93 ~VhQnP~--DGL-----Rm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~R---i-DD~PrtFSGGMqQRLQ 161 (258)
T COG4107 93 FVHQNPR--DGL-----RMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDR---I-DDLPRTFSGGMQQRLQ 161 (258)
T ss_pred eeecCcc--ccc-----eeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCccc---c-cCcccccchHHHHHHH
Confidence 0100000 000 00000111221 122221111123344556688888876432 2 3467889999999999
Q ss_pred HHHHHcCCCcEEEEeCCChhhHHHH----HHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 321 TGEMLVGPAQALFMDEISNSTTFQI----VNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 321 IAraLv~~P~iLlLDEPTs~~~~~i----~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
|||-|+..|+++||||||.++|..+ .+.++.+..+++-.++| ++|+...+.-++|+.++|.+|++++.|-.+.++
T Consensus 162 iARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~vi-VTHDl~VarLla~rlmvmk~g~vve~GLTDrvL 240 (258)
T COG4107 162 IARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVI-VTHDLAVARLLADRLMVMKQGQVVESGLTDRVL 240 (258)
T ss_pred HHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEE-EechhHHHHHhhhcceeecCCCEeccccccccc
Confidence 9999999999999999999766554 55556666655555554 568877777889999999999999999988884
No 364
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=6.4e-27 Score=216.67 Aligned_cols=210 Identities=22% Similarity=0.289 Sum_probs=137.4
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhH
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYE 248 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~ 248 (521)
....+++.|||+++.|+.++|+|.||||||||.|+|+|.++|+. +...+..+..++....-|- .+++.+++...
T Consensus 24 ~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTs-G~il~n~~~L~~~Dy~~R~-----k~IRMiFQDpn 97 (267)
T COG4167 24 QTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS-GEILINDHPLHFGDYSFRS-----KRIRMIFQDPN 97 (267)
T ss_pred hhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCC-ceEEECCccccccchHhhh-----hheeeeecCCc
Confidence 34568999999999999999999999999999999999998873 2333333333332211110 00111111100
Q ss_pred HHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCC-CccccccccCccCCCCChHHHHHHHHHHHHcC
Q 044321 249 MLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGL-DVCADTMVGDEILRGISGGQRKRVTTGEMLVG 327 (521)
Q Consensus 249 ~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL-~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~ 327 (521)
..+..+.....+.. ..............++.+.+.|+.+|| ++.++-++ .-||-||||||++||||+.
T Consensus 98 --ts~NPRl~iGqiLd----~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~-----~~la~~QKQRVaLARALIL 166 (267)
T COG4167 98 --TSLNPRLRIGQILD----FPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYP-----HMLAPGQKQRVALARALIL 166 (267)
T ss_pred --cccChhhhhhhHhc----chhhhcccCChHHHHHHHHHHHHHhccCccccccch-----hhcCchhHHHHHHHHHHhc
Confidence 00000000000000 000000111122344566778999998 45555444 4699999999999999999
Q ss_pred CCcEEEEeCCChhhHHH----HHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 328 PAQALFMDEISNSTTFQ----IVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 328 ~P~iLlLDEPTs~~~~~----i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
+|+|+|.||..+++|.. +.+.+.++-.+ .+...|.++|+...+..++|.|+||++|++|+.|.+.+++
T Consensus 167 ~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek-~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~ 238 (267)
T COG4167 167 RPKIIIADEALASLDMSMRSQLINLMLELQEK-QGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238 (267)
T ss_pred CCcEEEehhhhhhccHHHHHHHHHHHHHHHHH-hCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhh
Confidence 99999999998876654 44555554443 3566677789998999999999999999999999999983
No 365
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=4.2e-26 Score=265.39 Aligned_cols=242 Identities=21% Similarity=0.237 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCC-ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLP-TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLN 162 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~ 162 (521)
.+....++||+.+.++...|... .... .+-.-.-| ..+|.|+|+++.|...
T Consensus 1100 lEn~m~SVERv~eY~~~~~E~p~-~~~~--~~pp~~WP~~G~I~f~~~~~RYrp~------------------------- 1151 (1381)
T KOG0054|consen 1100 LENNMVSVERVLEYTDIPSEAPL-EIEE--SRPPPSWPSKGEIEFEDLSLRYRPN------------------------- 1151 (1381)
T ss_pred HHhcchhhhHHHHHhcCCCCCCC-CCcC--CCCCCCCCCCCeEEEEEeEEEeCCC-------------------------
Confidence 55667889999999986665111 0000 01011123 4689999999998421
Q ss_pred cccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCcc
Q 044321 163 ILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDV 223 (521)
Q Consensus 163 ~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~ 223 (521)
...||+||||+|+|||.+||+|..|||||||+++|-++..|..+ .-+.|||++.
T Consensus 1152 -------lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPv 1224 (1381)
T KOG0054|consen 1152 -------LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPV 1224 (1381)
T ss_pred -------CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCc
Confidence 22699999999999999999999999999999999999887532 1177899877
Q ss_pred ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccc
Q 044321 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMV 303 (521)
Q Consensus 224 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 303 (521)
+| ..|||.||+-..+. +.+...++..... .....+ .++...|+.|
T Consensus 1225 LF-sGTvR~NLDPf~e~--------------------------sD~~IW~ALe~~~------Lk~~v~--~~p~~Ld~~v 1269 (1381)
T KOG0054|consen 1225 LF-SGTVRFNLDPFDEY--------------------------SDDEIWEALERCQ------LKDVVS--SLPGGLDSEV 1269 (1381)
T ss_pred ee-cCccccccCccccc--------------------------CHHHHHHHHHHhC------hHHHHh--hCCcCCCcee
Confidence 65 57999998643211 1122222221110 112222 4666688888
Q ss_pred cCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHH-cCCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 304 GDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHI-LEGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 304 g~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~-~~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
.+ .+.++|-||||-|++||||+++++||+|||+|++.|.+.-..+++.+++ ....||+++-|....+. -+|+|+||+
T Consensus 1270 ~e-gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVm-d~DrVlVld 1347 (1381)
T KOG0054|consen 1270 SE-GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVM-DSDRVLVLD 1347 (1381)
T ss_pred cC-CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhh-hcCeEEEee
Confidence 75 5678999999999999999999999999999997665555555554433 24455555666666555 589999999
Q ss_pred CCEEEEecCHhHHHH
Q 044321 383 NGHIVYQGPREYVLE 397 (521)
Q Consensus 383 ~G~iv~~G~~~~v~~ 397 (521)
+|+|+++|+|.++++
T Consensus 1348 ~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1348 AGRVVEFDSPAELLS 1362 (1381)
T ss_pred CCeEeecCChHHHHh
Confidence 999999999999974
No 366
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=1.3e-26 Score=208.46 Aligned_cols=162 Identities=23% Similarity=0.282 Sum_probs=127.2
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~l 228 (521)
.....|-+||++|.+||++.|+|||||||||||..+.|.+.+... ..+.++|++.+||++
T Consensus 13 ~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphl 92 (213)
T COG4136 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHL 92 (213)
T ss_pred CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccccc
Confidence 445799999999999999999999999999999999998876521 227889999999999
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
+|.+|+.|+...... +...+..++..|+..||....+..+
T Consensus 93 sVg~Nl~fAlp~~~K-----------------------------------G~aRr~~a~aAL~~~gL~g~f~~dP----- 132 (213)
T COG4136 93 SVGQNLLFALPATLK-----------------------------------GNARRNAANAALERSGLDGAFHQDP----- 132 (213)
T ss_pred ccccceEEecCcccc-----------------------------------cHHHHhhHHHHHHHhccchhhhcCh-----
Confidence 999999997432110 1112234566888999998877654
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHH----HcCCeEEEEEecChhHH
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIH----ILEGTILISLLQPAPET 371 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~----~~~~t~ii~i~h~~~~~ 371 (521)
.+||||||-||++-|+|+..|+.++||||++.+|....+.+++++- ..+..++.+ +|+...+
T Consensus 133 ~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~V-THD~~Dv 198 (213)
T COG4136 133 ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQV-THDLQDV 198 (213)
T ss_pred hhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEE-ecccccC
Confidence 4699999999999999999999999999999888877777777653 234455554 4555443
No 367
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.94 E-value=1.8e-25 Score=242.70 Aligned_cols=188 Identities=27% Similarity=0.320 Sum_probs=146.4
Q ss_pred cccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------ceeeecCCccc-cCCCCHHHH
Q 044321 163 ILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------NRCDISQHDVH-IGEMTVRET 233 (521)
Q Consensus 163 ~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------~~~~v~q~d~~-~~~lTV~E~ 233 (521)
....+.+.+.+++++||.|.+|+.++|+||||+|||||||+|+|.+.|..+ ..+|+.|+... .+..|+.+.
T Consensus 327 ~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~ 406 (530)
T COG0488 327 VSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEE 406 (530)
T ss_pred cccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHH
Confidence 334443447899999999999999999999999999999999998876522 13888887633 366678776
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-cccccccCccCCCCC
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CADTMVGDEILRGIS 312 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~~~r~LS 312 (521)
+.-.. |+.. +..+...|..|++.. ...+.|+ .||
T Consensus 407 l~~~~-------------------------~~~~---------------e~~~r~~L~~f~F~~~~~~~~v~-----~LS 441 (530)
T COG0488 407 LSEGF-------------------------PDGD---------------EQEVRAYLGRFGFTGEDQEKPVG-----VLS 441 (530)
T ss_pred HHhhC-------------------------cccc---------------HHHHHHHHHHcCCChHHHhCchh-----hcC
Confidence 64321 0000 112345788888864 3345554 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEE-ecC
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVY-QGP 391 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~-~G~ 391 (521)
||||.||.+|..++.+|.+|||||||+.+|.+.++.|.+.+....+|+|++ +|+...+..+|++++++.+ ++.. .|.
T Consensus 442 GGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~V-SHDr~Fl~~va~~i~~~~~-~~~~~~g~ 519 (530)
T COG0488 442 GGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLV-SHDRYFLDRVATRIWLVED-KVEEFEGG 519 (530)
T ss_pred HhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEE-eCCHHHHHhhcceEEEEcC-ceeEcCCC
Confidence 999999999999999999999999999999999999999999888887775 5888899999999999998 6544 477
Q ss_pred HhHHHH
Q 044321 392 REYVLE 397 (521)
Q Consensus 392 ~~~v~~ 397 (521)
.++..+
T Consensus 520 y~~y~~ 525 (530)
T COG0488 520 YEDYLE 525 (530)
T ss_pred HHHHHH
Confidence 766544
No 368
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.93 E-value=3.2e-26 Score=206.32 Aligned_cols=118 Identities=35% Similarity=0.479 Sum_probs=96.9
Q ss_pred eeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHHHHH
Q 044321 174 LKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVRETL 234 (521)
Q Consensus 174 L~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~E~l 234 (521)
|+|||++|++|++++|+||||||||||+++|+|...+..+ ..+|++|++.+++.+||.++.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~ 80 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENE 80 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7899999999999999999999999999999999876421 116677776777777777760
Q ss_pred HHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChH
Q 044321 235 AFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGG 314 (521)
Q Consensus 235 ~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGG 314 (521)
....++.+++.+++.+..++.++. ....||||
T Consensus 81 -----------------------------------------------~~~~~~~~l~~l~~~~~~~~~~~~-~~~~LS~G 112 (137)
T PF00005_consen 81 -----------------------------------------------SDERIEEVLKKLGLEDLLDRKIGQ-RASSLSGG 112 (137)
T ss_dssp -----------------------------------------------HHHHHHHHHHHTTHGGGTGSBGTS-CGGGSCHH
T ss_pred -----------------------------------------------cccccccccccccccccccccccc-ccchhhHH
Confidence 012346678889988888888754 33679999
Q ss_pred HHHHHHHHHHHcCCCcEEEEeCCCh
Q 044321 315 QRKRVTTGEMLVGPAQALFMDEISN 339 (521)
Q Consensus 315 qrQRvaIAraLv~~P~iLlLDEPTs 339 (521)
|||||+||+||+.+|++|||||||+
T Consensus 113 e~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 113 EKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9999999999999999999999996
No 369
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.7e-25 Score=207.15 Aligned_cols=143 Identities=28% Similarity=0.416 Sum_probs=107.6
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLA 251 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~ 251 (521)
.+|+++|++|++|++++|+||||||||||+++|+|.+++. .+..++...+.. ... ...
T Consensus 13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~-~G~i~~~~~~~~--~~~---~~~---------------- 70 (157)
T cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT-SGEILIDGKDIA--KLP---LEE---------------- 70 (157)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ccEEEECCEEcc--cCC---HHH----------------
Confidence 6999999999999999999999999999999999998764 333444332210 000 000
Q ss_pred HHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcE
Q 044321 252 ELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQA 331 (521)
Q Consensus 252 ~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~i 331 (521)
....++. ..+|||||+||++||++++.+|++
T Consensus 71 -------------------------------------~~~~i~~------------~~qlS~G~~~r~~l~~~l~~~~~i 101 (157)
T cd00267 71 -------------------------------------LRRRIGY------------VPQLSGGQRQRVALARALLLNPDL 101 (157)
T ss_pred -------------------------------------HHhceEE------------EeeCCHHHHHHHHHHHHHhcCCCE
Confidence 0000111 112999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 332 LFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 332 LlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
++|||||+++|......+.+++... ++.++++++|+...+..+||++++|++|+
T Consensus 102 ~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 102 LLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999998887777776665443 23567777888888889999999999874
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.93 E-value=3.3e-25 Score=221.75 Aligned_cols=209 Identities=20% Similarity=0.218 Sum_probs=126.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHh-----CCCC-----CC----------CCceeeecCCccccC-C--
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALA-----GKLD-----SS----------LKNRCDISQHDVHIG-E-- 227 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~La-----G~l~-----~~----------~~~~~~v~q~d~~~~-~-- 227 (521)
..-|+|||+.|+.|++++|.|+||||||||++.+. ..+. |. .....+|.|.++.-. .
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45799999999999999999999999999998552 1110 10 011256666554211 1
Q ss_pred ----CCHHHHHH--HHHHhccCchhhHHHH----HHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc
Q 044321 228 ----MTVRETLA--FSARCQGVGSRYEMLA----ELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV 297 (521)
Q Consensus 228 ----lTV~E~l~--f~~~~~~~~~~~~~~~----~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 297 (521)
..|.+.+. |...|+|.....+.+. ..+..+ ..+............. ........+|+.+||..
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~-----v~~ltv~e~~~~~~~~--~~~~~~~~~L~~vgL~~ 160 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIAD-----VLDMTVEEALEFFENI--PKIARKLQTLCDVGLGY 160 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHH-----HhcCCHHHHHHHHHhh--hhHHHHHHHHHHcCCch
Confidence 11222221 1112333211111000 000000 0011111111111100 01123556889999976
Q ss_pred -cccccccCccCCCCChHHHHHHHHHHHHcCC---CcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHH
Q 044321 298 -CADTMVGDEILRGISGGQRKRVTTGEMLVGP---AQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPET 371 (521)
Q Consensus 298 -~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~---P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~ 371 (521)
..+..+ ..|||||+||+.||++|+.+ |+++||||||++++....+.+.+++.++ .+.++|+++|+...+
T Consensus 161 l~l~~~~-----~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i 235 (261)
T cd03271 161 IKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVI 235 (261)
T ss_pred hhhcCcc-----ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 345444 46999999999999999996 7999999999998887777776666543 244555566776665
Q ss_pred HhhcCeEEEE------eCCEEEEecCH
Q 044321 372 YDLFDDIILI------SNGHIVYQGPR 392 (521)
Q Consensus 372 ~~l~D~VivL------~~G~iv~~G~~ 392 (521)
..||++++| ++|+|+++|++
T Consensus 236 -~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 236 -KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred -HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 579999999 89999999974
No 371
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.91 E-value=1.9e-23 Score=220.07 Aligned_cols=213 Identities=22% Similarity=0.321 Sum_probs=144.5
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC-CceeeecCCccccCCCCHHHHHH-HHHHhccCchhh
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL-KNRCDISQHDVHIGEMTVRETLA-FSARCQGVGSRY 247 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~-~~~~~v~q~d~~~~~lTV~E~l~-f~~~~~~~~~~~ 247 (521)
++.+++|++|.+.+|+-++|+|||||||||+|++|+|...|.. ....|...........++-+.+. +..... .+.
T Consensus 87 g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~---~rl 163 (614)
T KOG0927|consen 87 GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHER---KRL 163 (614)
T ss_pred CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHH---HHH
Confidence 3579999999999999999999999999999999999887742 22233222222222223222222 221110 011
Q ss_pred HHH-HHHHHHHHhcCCCCCCCh----HHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCccCCCCChHHHHHHHH
Q 044321 248 EML-AELTRREKAAGIKPDPDI----DVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDEILRGISGGQRKRVTT 321 (521)
Q Consensus 248 ~~~-~~l~~~e~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~~r~LSGGqrQRvaI 321 (521)
+.. ..+.. ...+.+. +.+...........+..+-.+|..+|.. +..+..+ .+||||+|.|+++
T Consensus 164 e~~~E~l~~------~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~-----~~~SgGwrmR~aL 232 (614)
T KOG0927|consen 164 EYLAEDLAQ------ACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKV-----KDLSGGWRMRAAL 232 (614)
T ss_pred HHHHHHHHh------hccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHh-----hccCchHHHHHHH
Confidence 100 01100 0011111 1222233344444555666677777764 4455554 4599999999999
Q ss_pred HHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCE-EEEecCHhHHH
Q 044321 322 GEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGH-IVYQGPREYVL 396 (521)
Q Consensus 322 AraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~-iv~~G~~~~v~ 396 (521)
||+|..+|++|+|||||+++|.+.+.+|.+++.+....++++++|+.+.+-.+|.+|+-|.+++ +.|.|+.+...
T Consensus 233 Ar~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 233 ARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQYV 308 (614)
T ss_pred HHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeeecCCHHHHh
Confidence 9999999999999999999999999999999988776456667788888899999999999999 56678877653
No 372
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.7e-23 Score=192.00 Aligned_cols=197 Identities=20% Similarity=0.249 Sum_probs=128.5
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccc--cCCCCHHHHHHHHHHhcc-Cchh
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVH--IGEMTVRETLAFSARCQG-VGSR 246 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~--~~~lTV~E~l~f~~~~~~-~~~~ 246 (521)
..++|+||||+++.||+++|=|||||||||||++|-|-+.|+.+ .+.|.-.+.. +-....++-+....+.-| +.+.
T Consensus 23 ~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G-~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQF 101 (235)
T COG4778 23 RLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEG-QILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQF 101 (235)
T ss_pred EeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCc-eEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHH
Confidence 35799999999999999999999999999999999999888632 2333222211 122333444433222111 1111
Q ss_pred hHHHHHHHHHHHhcCCCCCCChHHHHHHH---hhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHH
Q 044321 247 YEMLAELTRREKAAGIKPDPDIDVFMKAA---ATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGE 323 (521)
Q Consensus 247 ~~~~~~l~~~e~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAr 323 (521)
....+.+ +.++.+++.. ..........+..+|..+++++..-.. .+.++||||||||-|||
T Consensus 102 LRviPRV------------~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~L----aPaTFSGGEqQRVNIaR 165 (235)
T COG4778 102 LRVIPRV------------SALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSL----APATFSGGEQQRVNIAR 165 (235)
T ss_pred HHhccCc------------chHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcC----CCcccCCchheehhhhh
Confidence 1111111 1122222221 223344555677889999998755433 24579999999999999
Q ss_pred HHcCCCcEEEEeCCChhhHHHHHHHHHHHHHH--cCCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 324 MLVGPAQALFMDEISNSTTFQIVNSLRQFIHI--LEGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 324 aLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~--~~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
.++.+-+||+|||||+++|........+++.+ ..++.++=+-|+-+.-...|||++-+..
T Consensus 166 gfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 166 GFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred hhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 99999999999999998776544444444432 2567777777876555678999988753
No 373
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.89 E-value=3.7e-23 Score=199.21 Aligned_cols=164 Identities=14% Similarity=0.144 Sum_probs=103.5
Q ss_pred eeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCc--------eeeecCCccccCCCCHHHHHHHHHHhccCchh
Q 044321 175 KDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN--------RCDISQHDVHIGEMTVRETLAFSARCQGVGSR 246 (521)
Q Consensus 175 ~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~--------~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~ 246 (521)
+++++++.+| +++|+||||||||||+++|+|++.+.... ..+..+.+.. .... ..+...+++.
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------~~~v~~vfq~ 84 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETR--KPAN------FAEVTLTFDN 84 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCC--CCCc------eEEEEEEEEc
Confidence 5789999999 99999999999999999999987543100 0000010000 0000 0011111110
Q ss_pred hHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHc
Q 044321 247 YEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLV 326 (521)
Q Consensus 247 ~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv 326 (521)
. +.. + . ......++++++. .+..++.+ ..||||||||++||++|+
T Consensus 85 ~-------------------~~~-~----~---~~~~~~~~~~l~~---~~~~~~~~-----~~LS~G~kqrl~la~~l~ 129 (197)
T cd03278 85 S-------------------DGR-Y----S---IISQGDVSEIIEA---PGKKVQRL-----SLLSGGEKALTALALLFA 129 (197)
T ss_pred C-------------------CCc-e----e---EEehhhHHHHHhC---CCccccch-----hhcCHHHHHHHHHHHHHH
Confidence 0 000 0 0 0001234455554 33444444 469999999999999987
Q ss_pred ----CCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 327 ----GPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 327 ----~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
.+|+++||||||+++|......+.+++.+. .+.+||+++|+... .+.||+++.|..
T Consensus 130 ~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~-~~~~d~v~~~~~ 190 (197)
T cd03278 130 IFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGT-MEAADRLYGVTM 190 (197)
T ss_pred HhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHH-HhhcceEEEEEe
Confidence 577999999999999988888887777654 23556666777665 478999999974
No 374
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.88 E-value=1.3e-23 Score=204.53 Aligned_cols=180 Identities=14% Similarity=0.211 Sum_probs=121.0
Q ss_pred CCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC---C--CceeeecCCccccCCCCHHHHHHHHHHhcc
Q 044321 168 KKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS---L--KNRCDISQHDVHIGEMTVRETLAFSARCQG 242 (521)
Q Consensus 168 ~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~---~--~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~ 242 (521)
++...+|+++++ ++++|+||||||||||+++|.-.+... . ...+++.+....++.+|+.+.+.+.....+
T Consensus 14 ~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (212)
T cd03274 14 YAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIID 88 (212)
T ss_pred CCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHhhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCC
Confidence 355679999987 899999999999999999998322111 1 123566777777777888876655433211
Q ss_pred CchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHH
Q 044321 243 VGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTG 322 (521)
Q Consensus 243 ~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIA 322 (521)
. ..+. ..++..... .......++++.++|++..++.++ .||+|||||++||
T Consensus 89 ~-------~~l~----~~g~~~~~~-------------~~~v~~~~~~~~~~L~~~~~~~~~-----~lS~G~~~r~~la 139 (212)
T cd03274 89 K-------PLLK----SKGIDLDHN-------------RFLILQGEVEQIAQMPKKSWKNIS-----NLSGGEKTLSSLA 139 (212)
T ss_pred H-------HHHH----HCCcCCCCC-------------ceEEcCCcEEEeeccccccccchh-----hcCHHHHHHHHHH
Confidence 0 0000 001100000 000001345567788877777665 5999999999999
Q ss_pred HHHcC----CCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 323 EMLVG----PAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 323 raLv~----~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+|++. +|+++||||||+++|....+.+.+++.+. ++++|+++ |+ +++.++||+|++|..
T Consensus 140 ~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs-~~-~~~~~~~d~v~~~~~ 204 (212)
T cd03274 140 LVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVIS-LR-NNMFELADRLVGIYK 204 (212)
T ss_pred HHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEE-Cc-HHHHHhCCEEEEEEe
Confidence 99963 68999999999999988888877776655 34555554 54 578899999999974
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.87 E-value=7.9e-22 Score=195.15 Aligned_cols=75 Identities=24% Similarity=0.379 Sum_probs=62.4
Q ss_pred cCCCCChHHHHHHHHHHHHc----CCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 307 ILRGISGGQRKRVTTGEMLV----GPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv----~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
.+..||||||||++||++|+ .+|+++||||||+++|....+.+.+.+.+. .+++++++||. +++.++||++++|
T Consensus 155 ~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~-~~~~~~~d~i~~l 233 (243)
T cd03272 155 EMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFR-PELLEVADKFYGV 233 (243)
T ss_pred cccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecC-HHHHhhCCEEEEE
Confidence 34569999999999999996 368999999999999988888777776654 35777777776 5688999999998
Q ss_pred e
Q 044321 382 S 382 (521)
Q Consensus 382 ~ 382 (521)
.
T Consensus 234 ~ 234 (243)
T cd03272 234 K 234 (243)
T ss_pred E
Confidence 6
No 376
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.87 E-value=1e-21 Score=213.15 Aligned_cols=171 Identities=23% Similarity=0.314 Sum_probs=127.8
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC--------CceeeecCCccccCCCCHHHHHHHHHHhccC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL--------KNRCDISQHDVHIGEMTVRETLAFSARCQGV 243 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~--------~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~ 243 (521)
..|++.++.|++|+.+.|.||||||||||+|+|+|+.+-.. ....|++|.+ .+|..|.+|-+.+......
T Consensus 407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~P-Y~p~GtLre~l~YP~~~~~- 484 (604)
T COG4178 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRP-YLPQGTLREALCYPNAAPD- 484 (604)
T ss_pred eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCC-CCCCccHHHHHhCCCCCCC-
Confidence 78999999999999999999999999999999999865321 2237888875 5677799998876422110
Q ss_pred chhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccC-ccCCCCChHHHHHHHHH
Q 044321 244 GSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGD-EILRGISGGQRKRVTTG 322 (521)
Q Consensus 244 ~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~-~~~r~LSGGqrQRvaIA 322 (521)
.. .+....+|..+||++..+..=.. +.-+-||+||||||++|
T Consensus 485 ----------------------~~---------------d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafA 527 (604)
T COG4178 485 ----------------------FS---------------DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFA 527 (604)
T ss_pred ----------------------CC---------------hHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHH
Confidence 00 11234467777777655443211 23456999999999999
Q ss_pred HHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 323 EMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 323 raLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
|+|+++|+++||||.|+++|.+....+.+++++. -.++||++.|. +....+.++.+-+.
T Consensus 528 RilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr-~tl~~~h~~~l~l~ 587 (604)
T COG4178 528 RLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHR-PTLWNFHSRQLELL 587 (604)
T ss_pred HHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccc-hhhHHHHhhheeec
Confidence 9999999999999999999999999999988752 46777777665 35566666655554
No 377
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.87 E-value=1.2e-21 Score=190.75 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=64.3
Q ss_pred cCCCCChHHHHHHHHHHHHcC----------CCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhh
Q 044321 307 ILRGISGGQRKRVTTGEMLVG----------PAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDL 374 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~----------~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l 374 (521)
.+..|||||+||++||++|+. +|+++||||||+++|....+.+.+++.+. .+.++++++|+...+..+
T Consensus 120 ~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~ 199 (213)
T cd03279 120 PVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERI 199 (213)
T ss_pred CccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhh
Confidence 345699999999999999984 67899999999999887777766655443 245666677888888899
Q ss_pred cCeEEEEeCCE
Q 044321 375 FDDIILISNGH 385 (521)
Q Consensus 375 ~D~VivL~~G~ 385 (521)
+|++++|++|-
T Consensus 200 ~~~i~~~~~~~ 210 (213)
T cd03279 200 PQRLEVIKTPG 210 (213)
T ss_pred CcEEEEEecCC
Confidence 99999999874
No 378
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.87 E-value=5.1e-21 Score=219.74 Aligned_cols=117 Identities=22% Similarity=0.276 Sum_probs=90.2
Q ss_pred HHHHHHcCCCc-cccccccCccCCCCChHHHHHHHHHHHHcCCC---cEEEEeCCChhhHHHHHHHHHHHHHHc--CCeE
Q 044321 287 DYILKILGLDV-CADTMVGDEILRGISGGQRKRVTTGEMLVGPA---QALFMDEISNSTTFQIVNSLRQFIHIL--EGTI 360 (521)
Q Consensus 287 ~~iL~~lgL~~-~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P---~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ 360 (521)
..+|+.+||.. ..+..+ ..|||||+|||.||++|+.+| +++||||||++++......|.++++++ .+.+
T Consensus 811 l~~L~~vgL~~l~l~~~~-----~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~T 885 (943)
T PRK00349 811 LQTLVDVGLGYIKLGQPA-----TTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNT 885 (943)
T ss_pred HHHHHHCCCCcccccCCc-----ccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 45788899975 345544 469999999999999999999 999999999998887777766665543 2445
Q ss_pred EEEEecChhHHHhhcCeEEEE------eCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHHH
Q 044321 361 LISLLQPAPETYDLFDDIILI------SNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQE 418 (521)
Q Consensus 361 ii~i~h~~~~~~~l~D~VivL------~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~ 418 (521)
||+++|+...+ ..||+|+.| ++|++++.|+++++.. +|. ..++.||..
T Consensus 886 VIiitH~~~~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~--------~~~-s~t~~~l~~ 939 (943)
T PRK00349 886 VVVIEHNLDVI-KTADWIIDLGPEGGDGGGEIVATGTPEEVAK--------VEA-SYTGRYLKP 939 (943)
T ss_pred EEEEecCHHHH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHHh--------Ccc-cHHHHHHHH
Confidence 55566776665 579999999 7999999999998843 343 345666643
No 379
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.86 E-value=7.9e-21 Score=226.85 Aligned_cols=107 Identities=17% Similarity=0.224 Sum_probs=86.0
Q ss_pred hhHHHHHHHHcCCCcc-ccccccCccCCCCChHHHHHHHHHHHHc---CCCcEEEEeCCChhhHHHHHHHHHHHHHHc--
Q 044321 283 SVITDYILKILGLDVC-ADTMVGDEILRGISGGQRKRVTTGEMLV---GPAQALFMDEISNSTTFQIVNSLRQFIHIL-- 356 (521)
Q Consensus 283 ~~~~~~iL~~lgL~~~-~dt~vg~~~~r~LSGGqrQRvaIAraLv---~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-- 356 (521)
...+ .+|+.+||.+. .+..+ ..|||||+|||+||++|+ .+|++|||||||++++....+.+.++++.+
T Consensus 787 ~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~ 860 (1809)
T PRK00635 787 HEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTH 860 (1809)
T ss_pred HHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence 3344 37888999765 56554 459999999999999997 699999999999999887777666665443
Q ss_pred CCeEEEEEecChhHHHhhcCeEEEEe------CCEEEEecCHhHHH
Q 044321 357 EGTILISLLQPAPETYDLFDDIILIS------NGHIVYQGPREYVL 396 (521)
Q Consensus 357 ~~t~ii~i~h~~~~~~~l~D~VivL~------~G~iv~~G~~~~v~ 396 (521)
.+.+||+++|+...+ ..||+|++|. +|++++.|+++++.
T Consensus 861 ~G~TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 861 QGHTVVIIEHNMHVV-KVADYVLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred cCCEEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence 345566677887777 8999999996 79999999999875
No 380
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.86 E-value=7.5e-22 Score=196.80 Aligned_cols=75 Identities=20% Similarity=0.328 Sum_probs=61.2
Q ss_pred cCCCCChHHHHHHHHHHHHc----CCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 307 ILRGISGGQRKRVTTGEMLV----GPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv----~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
.+..||||||||++||++|+ .+|++++|||||+++|....+.+.+++.+. .+.++|+++|. +++.+.||+++-+
T Consensus 163 ~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~-~~~~~~~d~v~~~ 241 (251)
T cd03273 163 SLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLK-EGMFNNANVLFRT 241 (251)
T ss_pred cccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECC-HHHHHhCCEEEEE
Confidence 34569999999999999997 588999999999999988877777766543 34556666676 6888899999887
Q ss_pred e
Q 044321 382 S 382 (521)
Q Consensus 382 ~ 382 (521)
.
T Consensus 242 ~ 242 (251)
T cd03273 242 R 242 (251)
T ss_pred E
Confidence 5
No 381
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.86 E-value=2.6e-22 Score=184.97 Aligned_cols=179 Identities=27% Similarity=0.364 Sum_probs=137.9
Q ss_pred eeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCc------------------eeeecCCccccCCCCHHHHHH
Q 044321 174 LKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN------------------RCDISQHDVHIGEMTVRETLA 235 (521)
Q Consensus 174 L~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~------------------~~~v~q~d~~~~~lTV~E~l~ 235 (521)
|-.+|+.+..||+.=++|||||||||||-.++|+++.+..+ .+|+.|+..-.+.|.|...+.
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~ 94 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLT 94 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhh
Confidence 55689999999999999999999999999999988754211 166666666666677776665
Q ss_pred HHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHH
Q 044321 236 FSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQ 315 (521)
Q Consensus 236 f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGq 315 (521)
+.- |+ ++....++++...++|++.....+ ..|||||
T Consensus 95 L~q-------------------------P~--------------~~~a~~i~~i~~~L~l~DKL~Rs~-----~qLSGGE 130 (248)
T COG4138 95 LHQ-------------------------PD--------------KTRTELLNDVAGALALDDKLGRST-----NQLSGGE 130 (248)
T ss_pred hcC-------------------------ch--------------HHHHHHHHHHHhhhcccchhhhhh-----hhcCccc
Confidence 431 10 111224577888899988776555 4699999
Q ss_pred HHHHHHHHHHcC-----C--CcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 316 RKRVTTGEMLVG-----P--AQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 316 rQRvaIAraLv~-----~--P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
=|||-+|-..+. | .++|+||||.+++|..-...|..++..+ .+.+||+..|+...+.+.+|++.+|+.|++
T Consensus 131 WQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l 210 (248)
T COG4138 131 WQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKL 210 (248)
T ss_pred ceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeE
Confidence 999999976653 3 3699999999998877666666665544 456666678999999999999999999999
Q ss_pred EEecCHhHHH
Q 044321 387 VYQGPREYVL 396 (521)
Q Consensus 387 v~~G~~~~v~ 396 (521)
+..|.+++++
T Consensus 211 ~~~G~~~eVl 220 (248)
T COG4138 211 LASGRREEVL 220 (248)
T ss_pred Eeecchhhhc
Confidence 9999999885
No 382
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.86 E-value=1e-20 Score=201.83 Aligned_cols=185 Identities=21% Similarity=0.354 Sum_probs=137.2
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC--------------------CceeeecCC---ccccCCCC
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL--------------------KNRCDISQH---DVHIGEMT 229 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~--------------------~~~~~v~q~---d~~~~~lT 229 (521)
.++||||++++||+++|.|--|||+|-|+++|.|..++.. .+.+||+.+ +-++..++
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~s 353 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS 353 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCc
Confidence 4789999999999999999999999999999999654431 123788765 34688899
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-cccccccCccC
Q 044321 230 VRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CADTMVGDEIL 308 (521)
Q Consensus 230 V~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~~~ 308 (521)
|.+|+.++ .+....... + + ........++...+.|++.. ..+..+
T Consensus 354 I~~Ni~l~-~l~~~~~~~-~---i------------------------~~~~e~~~~~~~~~~l~Ik~~s~~~~v----- 399 (500)
T COG1129 354 IAENITLA-SLRRFSRRG-L---I------------------------DRRKERALAERYIRRLRIKTPSPEQPI----- 399 (500)
T ss_pred HHHheehH-hhhhhcccc-c---c------------------------ChHHHHHHHHHHHHhcCcccCCccchh-----
Confidence 99999887 221110000 0 0 00111234566777777743 233444
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChh----hHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNS----TTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~----~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
..||||.||+|.|||.|..+|++|||||||.+ ...+|.+.|++++. .+..|++++...+|+..+||||+||++|
T Consensus 400 ~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~--~G~ail~iSSElpEll~~~DRIlVm~~G 477 (500)
T COG1129 400 GTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAA--EGKAILMISSELPELLGLSDRILVMREG 477 (500)
T ss_pred hcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHH--CCCEEEEEeCChHHHHhhCCEEEEEECC
Confidence 46999999999999999999999999999995 55678888888775 3555566677889999999999999999
Q ss_pred EEEEecCHh
Q 044321 385 HIVYQGPRE 393 (521)
Q Consensus 385 ~iv~~G~~~ 393 (521)
+++..-+.+
T Consensus 478 ri~~e~~~~ 486 (500)
T COG1129 478 RIVGELDRE 486 (500)
T ss_pred EEEEEeccc
Confidence 998754443
No 383
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.85 E-value=2.1e-21 Score=204.62 Aligned_cols=200 Identities=21% Similarity=0.263 Sum_probs=139.5
Q ss_pred ccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhc
Q 044321 162 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQ 241 (521)
Q Consensus 162 ~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~ 241 (521)
++...+.++-.++++++|-|.+++.+++|||||+|||||||++.|.+.|..+. ..+.....++.. .++..+...+
T Consensus 394 nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~--vs~~~H~~~~~y--~Qh~~e~ldl- 468 (614)
T KOG0927|consen 394 NVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGM--VSRHSHNKLPRY--NQHLAEQLDL- 468 (614)
T ss_pred ccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccc--ccccccccchhh--hhhhHhhcCc-
Confidence 33444444447999999999999999999999999999999999999886321 112222333311 1111111100
Q ss_pred cCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHH
Q 044321 242 GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTT 321 (521)
Q Consensus 242 ~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaI 321 (521)
..+.. +..+..... ......+..+|..+||....++. +++.||+|||+||..
T Consensus 469 ----------~~s~l------------e~~~~~~~~--~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~Gqr~rVlF 520 (614)
T KOG0927|consen 469 ----------DKSSL------------EFMMPKFPD--EKELEEMRSILGRFGLTGDAQVV----PMSQLSDGQRRRVLF 520 (614)
T ss_pred ----------chhHH------------HHHHHhccc--cchHHHHHHHHHHhCCCcccccc----chhhcccccchhHHH
Confidence 00001 111111110 11223456689999998554432 345799999999999
Q ss_pred HHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEE-EEecCHhHH
Q 044321 322 GEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHI-VYQGPREYV 395 (521)
Q Consensus 322 AraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~i-v~~G~~~~v 395 (521)
|+.++..|.+|+|||||+++|...++.+.+.+.+..+++|++ +|+.-.+.+++++|.+..+|.+ .+.|.....
T Consensus 521 a~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~v-SHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~y 594 (614)
T KOG0927|consen 521 ARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLV-SHDFRLISQVAEEIWVCENGTVTKWDGDIEIY 594 (614)
T ss_pred HHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCceeee-echhhHHHHHHHHhHhhccCceeecCccHHHH
Confidence 999999999999999999999999999999998877777664 5778888899999999988776 466765543
No 384
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.85 E-value=1.5e-20 Score=215.53 Aligned_cols=104 Identities=22% Similarity=0.278 Sum_probs=82.5
Q ss_pred HHHHHHHcCCCcc-ccccccCccCCCCChHHHHHHHHHHHHcC---CCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCe
Q 044321 286 TDYILKILGLDVC-ADTMVGDEILRGISGGQRKRVTTGEMLVG---PAQALFMDEISNSTTFQIVNSLRQFIHIL--EGT 359 (521)
Q Consensus 286 ~~~iL~~lgL~~~-~dt~vg~~~~r~LSGGqrQRvaIAraLv~---~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t 359 (521)
...+|+.+||... .+..+ ..|||||+|||.||++|+. +|+++||||||++++......|.++++++ .+.
T Consensus 808 ~l~~L~~~gL~~l~l~~~~-----~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~ 882 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGN 882 (924)
T ss_pred HHHHHHHcCCCchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 3457888999752 44443 4699999999999999997 59999999999998887777776666543 345
Q ss_pred EEEEEecChhHHHhhcCeEEEE------eCCEEEEecCHhHH
Q 044321 360 ILISLLQPAPETYDLFDDIILI------SNGHIVYQGPREYV 395 (521)
Q Consensus 360 ~ii~i~h~~~~~~~l~D~VivL------~~G~iv~~G~~~~v 395 (521)
+||+++|+...+ ..||+|++| ++|++++.|+++++
T Consensus 883 TVIvi~H~~~~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 883 TVVVIEHNLDVI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EEEEEeCCHHHH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 666667777666 579999999 79999999998875
No 385
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=2.4e-21 Score=203.24 Aligned_cols=188 Identities=23% Similarity=0.244 Sum_probs=129.3
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----ceeeecCCccccCCCCHHHHHHHHHHhccC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----NRCDISQHDVHIGEMTVRETLAFSARCQGV 243 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~ 243 (521)
+.+.+|++-++++..|+.++|+|+||+||||||++|+.-.-.... ...++.-.......-+.+..+..
T Consensus 91 G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~------- 163 (582)
T KOG0062|consen 91 GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLA------- 163 (582)
T ss_pred cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHH-------
Confidence 456799999999999999999999999999999999971100000 00111000000000111111000
Q ss_pred chhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHH
Q 044321 244 GSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGE 323 (521)
Q Consensus 244 ~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAr 323 (521)
.++. -..+....++.+.+|..+|+..-... .+.+.||||-|-|+++||
T Consensus 164 ------------~e~~----------------l~~~~~l~ei~~~~L~glGFt~emq~----~pt~slSGGWrMrlaLAR 211 (582)
T KOG0062|consen 164 ------------EEKE----------------LLAGLTLEEIYDKILAGLGFTPEMQL----QPTKSLSGGWRMRLALAR 211 (582)
T ss_pred ------------hhhh----------------hhccchHHHHHHHHHHhCCCCHHHHh----ccccccCcchhhHHHHHH
Confidence 0000 00011223345558889999754332 345679999999999999
Q ss_pred HHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEE-EEecCHhHHH
Q 044321 324 MLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHI-VYQGPREYVL 396 (521)
Q Consensus 324 aLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~i-v~~G~~~~v~ 396 (521)
||..+|+||||||||+.+|...+.+|...+.... .++++++|++...-..|.+||-+++-++ .|.|..+++.
T Consensus 212 Alf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~-~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fv 284 (582)
T KOG0062|consen 212 ALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK-ITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFV 284 (582)
T ss_pred HHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC-ceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHH
Confidence 9999999999999999999999999999988655 5666678999888899999999988777 5678776654
No 386
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.84 E-value=9.2e-21 Score=183.51 Aligned_cols=76 Identities=20% Similarity=0.214 Sum_probs=58.1
Q ss_pred cCCCCChHHHHH------HHHHHHHcCCCcEEEEeCCChhhHHHHHH-HHHHHHHHcC---CeEEEEEecChhHHHhhcC
Q 044321 307 ILRGISGGQRKR------VTTGEMLVGPAQALFMDEISNSTTFQIVN-SLRQFIHILE---GTILISLLQPAPETYDLFD 376 (521)
Q Consensus 307 ~~r~LSGGqrQR------vaIAraLv~~P~iLlLDEPTs~~~~~i~~-~L~~l~~~~~---~t~ii~i~h~~~~~~~l~D 376 (521)
.++.||+||+|| ++||++|+.+|++++||||++++|..... .+.+++.+.. +.++++++|+.. ....||
T Consensus 112 ~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~-~~~~~d 190 (204)
T cd03240 112 MRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE-LVDAAD 190 (204)
T ss_pred CccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH-HHhhCC
Confidence 345699999996 78999999999999999999999887766 6666654431 344555556654 456899
Q ss_pred eEEEEeC
Q 044321 377 DIILISN 383 (521)
Q Consensus 377 ~VivL~~ 383 (521)
+++.|.+
T Consensus 191 ~i~~l~~ 197 (204)
T cd03240 191 HIYRVEK 197 (204)
T ss_pred EEEEEee
Confidence 9999964
No 387
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.82 E-value=1.9e-19 Score=170.45 Aligned_cols=235 Identities=17% Similarity=0.206 Sum_probs=152.3
Q ss_pred CCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceee-ecCCccccCCCCHHHHHHHHHH-hccCch
Q 044321 168 KKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCD-ISQHDVHIGEMTVRETLAFSAR-CQGVGS 245 (521)
Q Consensus 168 ~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~-v~q~d~~~~~lTV~E~l~f~~~-~~~~~~ 245 (521)
.+..+++++||+++..||+-+++|.||||||-..|+|+|..+.+-.+.+. ..-+++-+-.+|.++--....+ ...+++
T Consensus 17 qG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQ 96 (330)
T COG4170 17 QGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQ 96 (330)
T ss_pred CCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhc
Confidence 35567999999999999999999999999999999999976544221110 0011222223343332111100 000110
Q ss_pred hh----HHHHHHHHHHHhcCCCCCCChHH-HHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHH
Q 044321 246 RY----EMLAELTRREKAAGIKPDPDIDV-FMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVT 320 (521)
Q Consensus 246 ~~----~~~~~l~~~e~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRva 320 (521)
.. +-...+- +....+ .|.....- ..+.. +. .+.++-++|..+|+.+..|-+- .++..|.-||-|+|.
T Consensus 97 eP~sCLDPS~~iG-~QlIq~-IP~wTfkgrWWq~F---~W-rKrrAIeLLHrVGIKdHkDIM~--SYP~ElTeGE~QKVM 168 (330)
T COG4170 97 EPQSCLDPSERVG-RQLIQN-IPAWTYKGRWWQRF---GW-RKRRAIELLHRVGIKDHKDIMR--SYPYELTEGECQKVM 168 (330)
T ss_pred CchhhcChHHHHH-HHHHhh-CccccccchHhhhh---ch-hHHHHHHHHHHhccccHHHHHH--hCcchhccCcceeee
Confidence 00 0000000 000001 11111100 00000 01 1234556899999998877653 467789999999999
Q ss_pred HHHHHcCCCcEEEEeCCChh----hHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 321 TGEMLVGPAQALFMDEISNS----TTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 321 IAraLv~~P~iLlLDEPTs~----~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
||.|++..|++||.||||++ +..++.+.|..+-+ .++|+|+.++|+...+.+.||+|-||.=|+-++.++.++++
T Consensus 169 IA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQ-n~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~ 247 (330)
T COG4170 169 IAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQ-NSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELV 247 (330)
T ss_pred eehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhc-cCCceEEEEcccHHHHHHHhhheEEEEecccccccchhHHh
Confidence 99999999999999999995 55667776666543 46888888999999999999999999999999999999985
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHh
Q 044321 397 EFFKFMGFECPKRKGVADFLQEV 419 (521)
Q Consensus 397 ~~f~~~g~~~p~~~~~adfl~~v 419 (521)
+ .|.+..++..+..+
T Consensus 248 ~--------~PhHPYTqALi~a~ 262 (330)
T COG4170 248 T--------MPHHPYTQALIRAI 262 (330)
T ss_pred c--------CCCCchHHHHHHhC
Confidence 3 56666666655443
No 388
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.81 E-value=1.7e-19 Score=186.88 Aligned_cols=161 Identities=25% Similarity=0.234 Sum_probs=117.2
Q ss_pred EEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCc-----eeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHH
Q 044321 178 SGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN-----RCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAE 252 (521)
Q Consensus 178 S~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~-----~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~ 252 (521)
.+.|..||+++++||||-||||+.++|+|.+.|+.+. ..|=+|.-.--...||.+.+.-..+-....+
T Consensus 361 ~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s------- 433 (591)
T COG1245 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSS------- 433 (591)
T ss_pred CCeeecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccc-------
Confidence 3455567899999999999999999999999987431 2455555444467899986654322110000
Q ss_pred HHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEE
Q 044321 253 LTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQAL 332 (521)
Q Consensus 253 l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iL 332 (521)
-...++++-|.|+...+..|. +|||||.|||+||.+|..+++++
T Consensus 434 -------------------------------~~~~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~L~reADlY 477 (591)
T COG1245 434 -------------------------------YFKTEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAALSREADLY 477 (591)
T ss_pred -------------------------------hhHHhhcCccchHHHHhcccc-----cCCchhHHHHHHHHHhccccCEE
Confidence 012346777888888887775 49999999999999999999999
Q ss_pred EEeCCChhhHH----HHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 333 FMDEISNSTTF----QIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 333 lLDEPTs~~~~----~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
+||||++.+|. .+.+.|++++...+.|. +++-|+...+--++|++++..
T Consensus 478 llDEPSA~LDvEqR~~vakvIRR~~e~~~kta-~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 478 LLDEPSAYLDVEQRIIVAKVIRRFIENNEKTA-LVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred EecCchhhccHHHHHHHHHHHHHHHhhcCceE-EEEecceehhhhhhceEEEEe
Confidence 99999997654 35677788776544454 445677766667889988875
No 389
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.81 E-value=5.3e-19 Score=180.52 Aligned_cols=189 Identities=21% Similarity=0.234 Sum_probs=127.4
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHH-HHHHhccCchhhHHHH
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLA-FSARCQGVGSRYEMLA 251 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~-f~~~~~~~~~~~~~~~ 251 (521)
=+..||++|+.||++-|+|.||||||||+++|+|++.|+ .+.+++.++++- .-+..+.-. |++ +++.+.+++
T Consensus 338 hvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pq-sG~I~ldg~pV~--~e~ledYR~LfSa----vFsDyhLF~ 410 (546)
T COG4615 338 HVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQ-SGEILLDGKPVS--AEQLEDYRKLFSA----VFSDYHLFD 410 (546)
T ss_pred eecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCC-CCceeECCccCC--CCCHHHHHHHHHH----HhhhHhhhH
Confidence 356799999999999999999999999999999999987 455677665543 333333321 222 233343333
Q ss_pred HHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcE
Q 044321 252 ELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQA 331 (521)
Q Consensus 252 ~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~i 331 (521)
.+-..+ +....+.++..|+.+.|.+...-+=|+-..-.||.|||||+++--||+-+.+|
T Consensus 411 ~ll~~e---------------------~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~I 469 (546)
T COG4615 411 QLLGPE---------------------GKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDI 469 (546)
T ss_pred hhhCCc---------------------cCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCe
Confidence 322111 11112345667777777654322222222335999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHH----HHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecC
Q 044321 332 LFMDEISNSTTFQIVNS----LRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGP 391 (521)
Q Consensus 332 LlLDEPTs~~~~~i~~~----L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~ 391 (521)
+++||=-+-.|+.+.+. +.-.+++.|+|++.++ |+ +.-+..+||++.+.+|++++.-+
T Consensus 470 lv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIs-HD-d~YF~~ADrll~~~~G~~~e~tg 531 (546)
T COG4615 470 LVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAIS-HD-DHYFIHADRLLEMRNGQLSELTG 531 (546)
T ss_pred EEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEe-cC-chhhhhHHHHHHHhcCceeeccc
Confidence 99999777666555444 4445565566666554 54 34678999999999999997643
No 390
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.81 E-value=3.4e-20 Score=178.73 Aligned_cols=173 Identities=15% Similarity=0.140 Sum_probs=102.7
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHH
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAE 252 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~ 252 (521)
-++++++.+.+| +++|+|||||||||||.+|...+....... .......+.+..+.....+.-.++
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~---------~r~~~~~~~i~~~~~~~~i~~~~~---- 76 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDT---------NRGSSLKDLIKDGESSAKITVTLK---- 76 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccc---------cccccHHHHhhCCCCeEEEEEEEE----
Confidence 346788888887 889999999999999999975332211000 000011222211100000000000
Q ss_pred HHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHH----cCC
Q 044321 253 LTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEML----VGP 328 (521)
Q Consensus 253 l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraL----v~~ 328 (521)
..++.+.+. .......++++|+. .+..++.+ +.||||||||++||+|| +.+
T Consensus 77 ------~~~~~~~~~-----------~~~~~~~~~~~l~~---~~~~~~~~-----~~lS~G~k~r~~ia~al~~~~~~~ 131 (198)
T cd03276 77 ------NQGLDANPL-----------CVLSQDMARSFLTS---NKAAVRDV-----KTLSGGERSFSTVCLLLSLWEVME 131 (198)
T ss_pred ------cCCccCCcC-----------CHHHHHHHHHHhcc---ccccCCcc-----cccChhHHHHHHHHHHHHHhcccC
Confidence 000000000 00001234455554 44455444 46999999999999999 699
Q ss_pred CcEEEEeCCChhhHHHHHHHHHHHHHHc-----CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 329 AQALFMDEISNSTTFQIVNSLRQFIHIL-----EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 329 P~iLlLDEPTs~~~~~i~~~L~~l~~~~-----~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
|+++||||||+++|......+.+++.+. ++++|++++|+..++.++ |+|.+|..|+
T Consensus 132 p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 132 SPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASS-DDVKVFRMKD 192 (198)
T ss_pred CCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccc-cceeEEEecC
Confidence 9999999999998887665555544332 345677777888888775 9999998754
No 391
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=3.9e-19 Score=182.83 Aligned_cols=180 Identities=24% Similarity=0.297 Sum_probs=127.8
Q ss_pred hhhcccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCc--------eeeecCCc--cccCC
Q 044321 158 LNSLNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN--------RCDISQHD--VHIGE 227 (521)
Q Consensus 158 l~~~~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~--------~~~v~q~d--~~~~~ 227 (521)
++.-++...+.+.++++++++|-|.--..++|+||||.||||||++|.|.+.|..+. .++..|+. .+-.+
T Consensus 587 LGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~E 666 (807)
T KOG0066|consen 587 LGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGE 666 (807)
T ss_pred eecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccc
Confidence 333344456667889999999999999999999999999999999999999986321 13333321 11222
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCcc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI 307 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 307 (521)
-|..|.|.-... + | ...+...|-.|||...++|.-
T Consensus 667 etp~EyLqr~FN---l--------------------p------------------yq~ARK~LG~fGL~sHAHTik---- 701 (807)
T KOG0066|consen 667 ETPVEYLQRKFN---L--------------------P------------------YQEARKQLGTFGLASHAHTIK---- 701 (807)
T ss_pred cCHHHHHHHhcC---C--------------------C------------------hHHHHHHhhhhhhhhccceEe----
Confidence 333333221100 0 0 001233577899988888863
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+..||||||-||++|..-++.|+||||||||+.++.+.++.|.+.+.++++.+||++|. ...+.+.--.++|+.+
T Consensus 702 ikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHD-eRLi~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 702 IKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHD-ERLIVETDCNLWVVEN 776 (807)
T ss_pred eeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecc-cceeeecCceEEEEcc
Confidence 45799999999999999999999999999999999999999999999888888776644 3333333334555544
No 392
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.79 E-value=2.1e-18 Score=183.33 Aligned_cols=178 Identities=19% Similarity=0.237 Sum_probs=126.1
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC-----------CceeeecCCccccCCCCHHHHHHHHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL-----------KNRCDISQHDVHIGEMTVRETLAFSA 238 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~-----------~~~~~v~q~d~~~~~lTV~E~l~f~~ 238 (521)
+..+++|+||.|+.|+-++|.||||||||+||++|+|+.+... +.--|+||.+ .++-.|.|+-+-|..
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrP-Ymt~GTLRdQvIYP~ 525 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRP-YMTLGTLRDQVIYPL 525 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCC-CccccchhheeeccC
Confidence 3468899999999999999999999999999999999876321 1236788875 455568888877753
Q ss_pred HhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc------cccccccCccCCCCC
Q 044321 239 RCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV------CADTMVGDEILRGIS 312 (521)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~------~~dt~vg~~~~r~LS 312 (521)
...... ....+. ..+..+|+.++|.| ..|+.+--+....||
T Consensus 526 ~~~~~~------------------~~~~~d---------------~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS 572 (659)
T KOG0060|consen 526 KAEDMD------------------SKSASD---------------EDILRILENVQLGHLLEREGGLDQQVDWDWMDVLS 572 (659)
T ss_pred cccccc------------------ccCCCH---------------HHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcC
Confidence 211000 000111 11222344444433 233333233445799
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+||+||++.||.+...|++-||||.|++++.++-..+.+.+++. +++.|++.|. .....+=|.++-|+.
T Consensus 573 ~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~-giT~iSVgHR-kSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 573 PGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM-GITFISVGHR-KSLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc-CCeEEEeccH-HHHHhhhhEEEEecC
Confidence 99999999999999999999999999999999999999988864 5666666664 456666788888874
No 393
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.78 E-value=4.4e-19 Score=171.03 Aligned_cols=80 Identities=14% Similarity=0.131 Sum_probs=61.0
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHH-HHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLR-QFIHIL--EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~-~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
..+|+||||++.|++++ .+|+++|+|||++++|......+. .++... .+.++++++|+ .++..+||++++|.+|+
T Consensus 90 s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~-~~l~~~~d~~~~l~~g~ 167 (200)
T cd03280 90 STFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHY-GELKAYAYKREGVENAS 167 (200)
T ss_pred chHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH-HHHHHHHhcCCCeEEEE
Confidence 45999999999999885 799999999999988876554442 222211 24455556665 57789999999999999
Q ss_pred EEEec
Q 044321 386 IVYQG 390 (521)
Q Consensus 386 iv~~G 390 (521)
+++.+
T Consensus 168 l~~~~ 172 (200)
T cd03280 168 MEFDP 172 (200)
T ss_pred EEEec
Confidence 98874
No 394
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.77 E-value=3.3e-18 Score=179.75 Aligned_cols=193 Identities=19% Similarity=0.239 Sum_probs=144.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------------ceeeecCCc---cccC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------------NRCDISQHD---VHIG 226 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------------~~~~v~q~d---~~~~ 226 (521)
...+++|||+|+.||+++|.|-.|-|-+.|+.+|+|+.++... +-+|||.+. -+.+
T Consensus 271 ~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~ 350 (501)
T COG3845 271 VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVL 350 (501)
T ss_pred CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCcccc
Confidence 5689999999999999999999999999999999998754320 126676654 2467
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccc-cccccC
Q 044321 227 EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCA-DTMVGD 305 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~-dt~vg~ 305 (521)
.+|+.||+.+...-..++.+.. --+. .+....+..+++.|+...+. ++
T Consensus 351 ~~sl~eN~vL~~~~~~~~~~~g----------------~l~~-----------~~i~~~a~~li~~fdVr~~~~~~---- 399 (501)
T COG3845 351 DLSLAENLVLGRHDKKPFSRGG----------------FLDR-----------RAIRKFARELIEEFDVRAPSPDA---- 399 (501)
T ss_pred CccHHHHhhhhhcccccccccc----------------ccCH-----------HHHHHHHHHHHHHcCccCCCCCc----
Confidence 8899999877543211111100 0011 12334566788888886322 22
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+.+.||||++||+-+||.|..+|++|++.+||.++|.-..+.+++.+.+. .++.|+.++.+.++++.+||+|.+|++
T Consensus 400 -~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~ 478 (501)
T COG3845 400 -PARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYE 478 (501)
T ss_pred -chhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeC
Confidence 34569999999999999999999999999999988887777766654332 567777788999999999999999999
Q ss_pred CEEEEecCHhHH
Q 044321 384 GHIVYQGPREYV 395 (521)
Q Consensus 384 G~iv~~G~~~~v 395 (521)
|+++...++++.
T Consensus 479 Gri~~~~~~~~~ 490 (501)
T COG3845 479 GRIVGIVPPEEA 490 (501)
T ss_pred CceecccccccC
Confidence 999988877653
No 395
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.77 E-value=7e-19 Score=175.13 Aligned_cols=74 Identities=16% Similarity=0.254 Sum_probs=59.9
Q ss_pred CCCChHHHHHHHHHHHHcC----CCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 309 RGISGGQRKRVTTGEMLVG----PAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~----~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
..||||||||++||++++. +|+++||||||+++|......+.+++.+. .+.++|+++|+ .++...||++++|.
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~-~~~~~~~d~i~~~~ 232 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLK-EEFFSKADALVGVY 232 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECC-HHHHhhCCeEEEEE
Confidence 6799999999999999986 48999999999999988777776666544 24556666677 56678999999997
Q ss_pred C
Q 044321 383 N 383 (521)
Q Consensus 383 ~ 383 (521)
.
T Consensus 233 ~ 233 (247)
T cd03275 233 R 233 (247)
T ss_pred e
Confidence 4
No 396
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=6.2e-18 Score=177.74 Aligned_cols=178 Identities=20% Similarity=0.233 Sum_probs=133.0
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCce--------eeecCCccccCCCCHHHHHHHHHHhccC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNR--------CDISQHDVHIGEMTVRETLAFSARCQGV 243 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~--------~~v~q~d~~~~~lTV~E~l~f~~~~~~~ 243 (521)
.++.++++.+..-...+++|+||+||||++|++.|.+.|..+.. +|..|+.+-+..+.|.+- .+..++
T Consensus 378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~--- 453 (582)
T KOG0062|consen 378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAV-DFMEKS--- 453 (582)
T ss_pred hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHH-HHHHHh---
Confidence 58889999999999999999999999999999999888764322 555565444333333321 111111
Q ss_pred chhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHH
Q 044321 244 GSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGE 323 (521)
Q Consensus 244 ~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAr 323 (521)
.| +. .++.+..-+..|||+.-. ....+.+||||||-||++|.
T Consensus 454 -------------------~p--------------G~-~~ee~r~hl~~~Gl~g~l----a~~si~~LSGGQKsrvafA~ 495 (582)
T KOG0062|consen 454 -------------------FP--------------GK-TEEEIRRHLGSFGLSGEL----ALQSIASLSGGQKSRVAFAA 495 (582)
T ss_pred -------------------CC--------------CC-CHHHHHHHHHhcCCCchh----hhccccccCCcchhHHHHHH
Confidence 11 11 112234467889997532 11235679999999999999
Q ss_pred HHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEE-ecCH
Q 044321 324 MLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVY-QGPR 392 (521)
Q Consensus 324 aLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~-~G~~ 392 (521)
+...+|.+|+|||||+.+|.+.+..|-+.++..++.+|++ +|+.+.+..+|+.+.+.++|++.- .|..
T Consensus 496 ~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~V-SHd~~fi~~~c~E~Wvve~g~vt~ieg~~ 564 (582)
T KOG0062|consen 496 CTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLV-SHDEEFISSLCKELWVVEDGKVTPIEGGI 564 (582)
T ss_pred HhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEE-ECcHHHHhhcCceeEEEcCCcEEeeeccH
Confidence 9999999999999999999999999999988887777765 578888999999999999999963 3444
No 397
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.74 E-value=3.1e-17 Score=155.09 Aligned_cols=204 Identities=21% Similarity=0.257 Sum_probs=123.2
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccC-CCCHHHHHHH-HH-HhccCchhhH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIG-EMTVRETLAF-SA-RCQGVGSRYE 248 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~-~lTV~E~l~f-~~-~~~~~~~~~~ 248 (521)
+++-|+|++++.|..++++|.||||||||||+|+|..--.. ....|...+.+-. .++---++.| +. .+..++...+
T Consensus 28 P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~-~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~age 106 (291)
T KOG2355|consen 28 PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGG-GVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGE 106 (291)
T ss_pred ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccC-CeEEEcCcCccccccccccCceeEeccccccccccccc
Confidence 68999999999999999999999999999999999642111 1111211111100 0000000000 00 0000000000
Q ss_pred HHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCC
Q 044321 249 MLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGP 328 (521)
Q Consensus 249 ~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~ 328 (521)
+.-..++....-...+.+... .+-+.+++.+.++-.. ..+.+|-|||+||.|+.-|+.+
T Consensus 107 -------------vplq~D~sae~mifgV~g~dp-~Rre~LI~iLDIdl~W-------RmHkvSDGqrRRVQicMGLL~P 165 (291)
T KOG2355|consen 107 -------------VPLQGDISAEHMIFGVGGDDP-ERREKLIDILDIDLRW-------RMHKVSDGQRRRVQICMGLLKP 165 (291)
T ss_pred -------------ccccccccHHHHHhhccCCCh-hHhhhhhhheeccceE-------EEeeccccchhhhHHHHhcccc
Confidence 000001111111111222222 3456677777775422 1245999999999999999999
Q ss_pred CcEEEEeCCChhhHHHH----HHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHHHH
Q 044321 329 AQALFMDEISNSTTFQI----VNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEF 398 (521)
Q Consensus 329 P~iLlLDEPTs~~~~~i----~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~~~ 398 (521)
=++|+|||.|--+|.-. .+.|+.-..+ .+.+|+..||.-+-......+++.|+.|+++..-+.+.+.++
T Consensus 166 fkVLLLDEVTVDLDVlARadLLeFlkeEce~-RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~i~e~ 238 (291)
T KOG2355|consen 166 FKVLLLDEVTVDLDVLARADLLEFLKEECEQ-RGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQKIKEF 238 (291)
T ss_pred eeEEEeeeeEeehHHHHHHHHHHHHHHHHhh-cCcEEEEEeeeccchhhcchhEEEecCCeeeeccccchhhhh
Confidence 99999999999766544 4444444443 466777788888888889999999999999986666666543
No 398
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.74 E-value=2.6e-17 Score=170.82 Aligned_cols=179 Identities=23% Similarity=0.291 Sum_probs=112.0
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHH------HHHHHHHhc-c---CchhhHH
Q 044321 180 IIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRE------TLAFSARCQ-G---VGSRYEM 249 (521)
Q Consensus 180 ~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E------~l~f~~~~~-~---~~~~~~~ 249 (521)
+.++|++++|+||||-||||-+|+|+|.+.|++... +.+. ..-+|-+ .-.|...+. + +-.+.+.
T Consensus 96 ~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~----~~pp--~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QY 169 (591)
T COG1245 96 TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY----EDPP--SWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQY 169 (591)
T ss_pred CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC----CCCC--CHHHHHHHhhhhHHHHHHHHHHcCCcceecchHH
Confidence 357999999999999999999999999999875321 0000 0001111 001111100 0 0000000
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCC
Q 044321 250 LAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPA 329 (521)
Q Consensus 250 ~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P 329 (521)
...+.+.-+ .......+... ..-..+++.+.|+|....|.-|.+ |||||-|||+||.++++++
T Consensus 170 Vd~iPk~~K-------G~v~elLk~~d-----e~g~~devve~l~L~nvl~r~v~~-----LSGGELQr~aIaa~l~rdA 232 (591)
T COG1245 170 VDLIPKVVK-------GKVGELLKKVD-----ERGKFDEVVERLGLENVLDRDVSE-----LSGGELQRVAIAAALLRDA 232 (591)
T ss_pred HHHHHHHhc-------chHHHHHHhhh-----hcCcHHHHHHHhcchhhhhhhhhh-----cCchHHHHHHHHHHHhccC
Confidence 011111000 01111111111 122568899999999998887764 9999999999999999999
Q ss_pred cEEEEeCCChhhHH----HHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 330 QALFMDEISNSTTF----QIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 330 ~iLlLDEPTs~~~~----~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+++|+||||+.+|. ...+.++++++. +..++++.|+....--++|-|.++..
T Consensus 233 DvY~FDEpsSyLDi~qRl~~ar~Irel~~~--~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 233 DVYFFDEPSSYLDIRQRLNAARVIRELAED--GKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred CEEEEcCCcccccHHHHHHHHHHHHHHhcc--CCeEEEEechHHHHHHhhheeEEEec
Confidence 99999999997654 456667776642 45666678887666667888888864
No 399
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.72 E-value=1.2e-17 Score=175.54 Aligned_cols=162 Identities=22% Similarity=0.307 Sum_probs=109.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC--------CCCceeeecCCccccCCCCHHHHHHHHHHhcc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS--------SLKNRCDISQHDVHIGEMTVRETLAFSARCQG 242 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~--------~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~ 242 (521)
..++..++|.|+||-.++|+||||||||+|+++|+|+.+- .....-|+||.+. +...|.++.+-|...
T Consensus 495 ~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPY-ms~gtlRDQIIYPdS--- 570 (728)
T KOG0064|consen 495 DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPY-MSGGTLRDQIIYPDS--- 570 (728)
T ss_pred ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCc-cCcCcccceeecCCc---
Confidence 3588999999999999999999999999999999997652 2223478888754 335666766554311
Q ss_pred CchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccC----ccCCCCChHHHHH
Q 044321 243 VGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGD----EILRGISGGQRKR 318 (521)
Q Consensus 243 ~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~----~~~r~LSGGqrQR 318 (521)
.. ++.+ .+ .++.+ ...+|..+.|++.+..-.|= +.-.-||||||||
T Consensus 571 ---~e----~~~~----kg-~~d~d------------------L~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR 620 (728)
T KOG0064|consen 571 ---SE----QMKR----KG-YTDQD------------------LEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQR 620 (728)
T ss_pred ---HH----HHHh----cC-CCHHH------------------HHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHH
Confidence 00 0100 01 11111 12233333333322221111 1112499999999
Q ss_pred HHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecC
Q 044321 319 VTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQP 367 (521)
Q Consensus 319 vaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~ 367 (521)
+++||++.++|+.-+|||.|++...++-..+.+.++..+ ..+++++|.
T Consensus 621 ~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~g-i~llsithr 668 (728)
T KOG0064|consen 621 MGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAG-ISLLSITHR 668 (728)
T ss_pred HHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhcC-ceEEEeecC
Confidence 999999999999999999999999999999999887654 555555554
No 400
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=3.5e-17 Score=168.62 Aligned_cols=212 Identities=23% Similarity=0.235 Sum_probs=136.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC---CCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhh
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL---DSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRY 247 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l---~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~ 247 (521)
+.++.|.|+.|-.|+.++|+||||-||||||+.|+.+- +|.. ...++.|+ +.-...|.-+++.-+-. .+.
T Consensus 277 k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnI-DvLlCEQE-vvad~t~Ai~tvl~aD~-----kRl 349 (807)
T KOG0066|consen 277 KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNI-DVLLCEQE-VVADSTSAIDTVLKADK-----KRL 349 (807)
T ss_pred ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCC-ceEeeeee-eeecCcHHHHHHHHhhH-----HHH
Confidence 45888999999999999999999999999999999852 3321 11333333 22223333333322210 111
Q ss_pred HHHHHHHHHHHhcCCCCCCChH-----HHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHH
Q 044321 248 EMLAELTRREKAAGIKPDPDID-----VFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTG 322 (521)
Q Consensus 248 ~~~~~l~~~e~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIA 322 (521)
.++.+-.+.+.... ..+.... .+.+..+.....++.++..||.-||++.-.. +++...+|||-|-||++|
T Consensus 350 ~lLeee~~L~~q~e-~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ----~rPt~kFSGGWRMRvSLA 424 (807)
T KOG0066|consen 350 ALLEEEAKLMSQIE-EGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQ----ERPTTKFSGGWRMRVSLA 424 (807)
T ss_pred HHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHh----cCCccccCCceeeehhHH
Confidence 22221111111000 0011111 1111112223334556778999999876443 233446999999999999
Q ss_pred HHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEE-ecCHhHH
Q 044321 323 EMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVY-QGPREYV 395 (521)
Q Consensus 323 raLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~-~G~~~~v 395 (521)
|||...|-+|+|||||+.++...+-+|.++++....|.+ +++|+...+-..|..||-|++-++-| .|...-+
T Consensus 425 RALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLL-IVSHDQgFLD~VCtdIIHLD~qkLhyYrGNY~~F 497 (807)
T KOG0066|consen 425 RALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLL-IVSHDQGFLDSVCTDIIHLDNQKLHYYRGNYTLF 497 (807)
T ss_pred HHHhcCceeeeecCCccccccceeeehhhHHhhhhheeE-EEecccchHHHHHHHHhhhhhhhhhhhcchHHHH
Confidence 999999999999999999999999999988865445544 45677788889999999999988854 4665433
No 401
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.70 E-value=2.9e-17 Score=161.15 Aligned_cols=152 Identities=18% Similarity=0.116 Sum_probs=105.0
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhc-cCchhhH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQ-GVGSRYE 248 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~-~~~~~~~ 248 (521)
...+.+|+++.+.+|++++|.||||+||||||+.++=. .+ -+++. .++...
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------~~-------------------la~~g~~vpa~~- 67 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------VL-------------------MAQIGCFVPCDS- 67 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------HH-------------------HHHhCCCcCccc-
Confidence 34689999999999999999999999999999998721 01 11111 000000
Q ss_pred HHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHH--c
Q 044321 249 MLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEML--V 326 (521)
Q Consensus 249 ~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraL--v 326 (521)
.. -...+.++..+|+.+.. .+++|.|+++++.+++++ +
T Consensus 68 -----------~~---------------------~~~~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~ 107 (222)
T cd03285 68 -----------AD---------------------IPIVDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSA 107 (222)
T ss_pred -----------EE---------------------EeccceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhC
Confidence 00 00123455566665322 246999999999999999 8
Q ss_pred CCCcEEEEeCC---ChhhHHHHHHH--HHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecC
Q 044321 327 GPAQALFMDEI---SNSTTFQIVNS--LRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGP 391 (521)
Q Consensus 327 ~~P~iLlLDEP---Ts~~~~~i~~~--L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~ 391 (521)
.+|+++||||| |+++|...... +..+.+..+.+ ++++||. .++.++||++..+.+|++.+.+.
T Consensus 108 ~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~-vlisTH~-~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 108 TENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCF-CLFATHF-HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCe-EEEEech-HHHHHHhhcCCCeEEEEEEEEEe
Confidence 99999999999 77777654332 23333322444 5555664 78899999999999999987764
No 402
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.70 E-value=5e-17 Score=158.51 Aligned_cols=79 Identities=14% Similarity=0.105 Sum_probs=58.4
Q ss_pred cCCCCChHHHHHHHHHHHH----cCCCcEEEEeCCChhhHHHHHHHHHHHHHHc----CCeEEEEEecChhHHHhhcC--
Q 044321 307 ILRGISGGQRKRVTTGEML----VGPAQALFMDEISNSTTFQIVNSLRQFIHIL----EGTILISLLQPAPETYDLFD-- 376 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraL----v~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~----~~t~ii~i~h~~~~~~~l~D-- 376 (521)
.+..||||||||+.++.+| +.+|+++|+||||+++|......+.+++... +.+++++++|+.....+.+|
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~ 202 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKM 202 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCce
Confidence 3456999999999877554 5899999999999988877666665554332 23456666676666777776
Q ss_pred eEEEEeCCE
Q 044321 377 DIILISNGH 385 (521)
Q Consensus 377 ~VivL~~G~ 385 (521)
+|++|++|+
T Consensus 203 ~v~~l~~g~ 211 (213)
T cd03277 203 TVLCVYNGP 211 (213)
T ss_pred EEEEEecCc
Confidence 788888886
No 403
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.69 E-value=3.8e-16 Score=171.65 Aligned_cols=117 Identities=24% Similarity=0.341 Sum_probs=87.2
Q ss_pred HHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCC---cEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEE
Q 044321 289 ILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPA---QALFMDEISNSTTFQIVNSLRQFIHIL--EGTILIS 363 (521)
Q Consensus 289 iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P---~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~ 363 (521)
.|..+||.-. ..| +..-+|||||.|||-+|..|.... .+++|||||+++-+.-++.|.+.++.+ ++-+||+
T Consensus 805 tL~dVGLgYi---~LG-QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViV 880 (935)
T COG0178 805 TLVDVGLGYI---KLG-QPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIV 880 (935)
T ss_pred HHHHcCcceE---ecC-CccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 5667888632 234 345579999999999999999877 899999999987766555555555443 3455555
Q ss_pred EecChhHHHhhcCeEEEE------eCCEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHHHh
Q 044321 364 LLQPAPETYDLFDDIILI------SNGHIVYQGPREYVLEFFKFMGFECPKRKGVADFLQEV 419 (521)
Q Consensus 364 i~h~~~~~~~l~D~VivL------~~G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~v 419 (521)
+.|++ .+...||.|+=| ..|+||+.|+|+++.+ +| ...++.||..+
T Consensus 881 IEHNL-dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~--------~~-~S~Tg~yLk~~ 932 (935)
T COG0178 881 IEHNL-DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK--------VK-ASYTGKYLKKY 932 (935)
T ss_pred Eeccc-ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh--------Cc-cchhHHHHHHH
Confidence 67776 577899999999 4589999999999964 45 55667777553
No 404
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.67 E-value=1.3e-15 Score=156.77 Aligned_cols=246 Identities=21% Similarity=0.324 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
.++++..++|+++.-.--....+.+ .|. +. .+.-.-.+.|.+++-........+.+|. .+..++..+..
T Consensus 321 teEa~r~i~rf~~~d~~A~~h~L~~--pRy-r~-ve~L~~p~~~~~v~k~faS~ld~~~lp~-------e~~~IleSFGv 389 (593)
T COG2401 321 TEEAKRYIDRFVGEDPMAYPHLLLA--PRY-RM-VEKLEGPIKFKNVTKTFASELDIKGLPN-------EFQDILESFGV 389 (593)
T ss_pred hHHHHHHHHHHhccCccccccceec--ccc-cc-ccccCCccccceeeeeeeeeeecccCCh-------HHHHHHHHhcc
Confidence 4667777788776432222211111 111 11 1111224667777665443333333331 22223333332
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC--------CCCC--------ceeeecCC-ccccC
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD--------SSLK--------NRCDISQH-DVHIG 226 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~--------~~~~--------~~~~v~q~-d~~~~ 226 (521)
..+.....+|+|||+.|+||++++|+|+|||||||||++|+|... |+.+ .++.++.. +.-|.
T Consensus 390 -~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~ 468 (593)
T COG2401 390 -RQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFG 468 (593)
T ss_pred -hheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccC
Confidence 233455689999999999999999999999999999999999642 2211 01112211 11122
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCc
Q 044321 227 EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDE 306 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 306 (521)
+-|+.|.+.- ... |+ ....++|+..||.+.. .-..
T Consensus 469 ~~tilehl~s-------------------------~tG--D~---------------~~AveILnraGlsDAv---lyRr 503 (593)
T COG2401 469 EVTILEHLRS-------------------------KTG--DL---------------NAAVEILNRAGLSDAV---LYRR 503 (593)
T ss_pred chhHHHHHhh-------------------------ccC--ch---------------hHHHHHHHhhccchhh---hhhc
Confidence 2222222110 000 00 1234578888887532 1113
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChh----hHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhh-cCeEEEE
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNS----TTFQIVNSLRQFIHILEGTILISLLQPAPETYDL-FDDIILI 381 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~----~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l-~D~VivL 381 (521)
..+.||-|||.|+.||.++...|.+++.||-.+. ++..+.+.|.+++.+.+.|.++++ |+.+..-.+ =|+++++
T Consensus 504 ~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvT-hrpEv~~AL~PD~li~v 582 (593)
T COG2401 504 KFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVT-HRPEVGNALRPDTLILV 582 (593)
T ss_pred cHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEe-cCHHHHhccCCceeEEe
Confidence 3456999999999999999999999999998774 455667777777776565655554 544455556 5888888
Q ss_pred eCCEEE
Q 044321 382 SNGHIV 387 (521)
Q Consensus 382 ~~G~iv 387 (521)
.-|.+.
T Consensus 583 gYg~v~ 588 (593)
T COG2401 583 GYGKVP 588 (593)
T ss_pred eccccc
Confidence 777654
No 405
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.64 E-value=5.5e-16 Score=147.04 Aligned_cols=72 Identities=15% Similarity=0.240 Sum_probs=56.2
Q ss_pred CChHHHHHHHHHHHHc----CCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 311 ISGGQRKRVTTGEMLV----GPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 311 LSGGqrQRvaIAraLv----~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
||||||||++||++|+ .+|+++++|||++++|....+.+.+++.+. .+.++++++|+.. ....+|+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~-~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE-MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHhhCCeEEEEEE
Confidence 9999999999999996 699999999999988877666665555432 2345566667654 5578999999974
No 406
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.64 E-value=4e-15 Score=178.51 Aligned_cols=106 Identities=22% Similarity=0.275 Sum_probs=79.9
Q ss_pred HHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCC---CcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEE
Q 044321 287 DYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGP---AQALFMDEISNSTTFQIVNSLRQFIHIL--EGTIL 361 (521)
Q Consensus 287 ~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~---P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~i 361 (521)
-..|..+||.... .| +...+|||||.||+-||..|..+ +.+++|||||+++...-++.|.++++.+ .+-+|
T Consensus 1680 L~~L~~vGLgYl~---LG-q~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tv 1755 (1809)
T PRK00635 1680 LQALIDNGLGYLP---LG-QNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSV 1755 (1809)
T ss_pred HHHHHHcCCCeee---CC-CcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeE
Confidence 3467888987532 33 34557999999999999999876 7899999999998877666666665443 23444
Q ss_pred EEEecChhHHHhhcCeEEEEe------CCEEEEecCHhHHHH
Q 044321 362 ISLLQPAPETYDLFDDIILIS------NGHIVYQGPREYVLE 397 (521)
Q Consensus 362 i~i~h~~~~~~~l~D~VivL~------~G~iv~~G~~~~v~~ 397 (521)
|++.|+. ++...||.|+-|- .|+||+.|+++++..
T Consensus 1756 ivieH~~-~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1756 IYIDHDP-ALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred EEEeCCH-HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 4456665 5666799999994 589999999999953
No 407
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.61 E-value=4.3e-15 Score=138.64 Aligned_cols=73 Identities=22% Similarity=0.278 Sum_probs=55.1
Q ss_pred CCChHHHHHHHHHHHHcC----CCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 310 GISGGQRKRVTTGEMLVG----PAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~----~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+||+||+||+++|++|+. +|+++|+|||+++++......+.+.+.+. +++++++++|+.. ....+|+++.|..
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~-~~~~~d~~~~l~~ 155 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE-LAELADKLIHIKK 155 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHhhhhEEEEEE
Confidence 499999999999999986 78999999999988876555554443322 2455566667654 4567999999864
No 408
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=5.4e-15 Score=149.64 Aligned_cols=75 Identities=15% Similarity=0.216 Sum_probs=59.1
Q ss_pred CCChHHHHHHHHHHHHcC----CCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 310 GISGGQRKRVTTGEMLVG----PAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~----~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
.|||||+||+++|++++. +|+++|+||||++++......+.+++... .+.++++++|+.. +..+||++++|.+|
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~-~~~~~d~~~~l~~~ 248 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQ-VAAMADNHFLVEKE 248 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHH-HHHhcCcEEEEEEe
Confidence 499999999999986553 99999999999999888777776666543 3345555666654 66899999999876
Q ss_pred E
Q 044321 385 H 385 (521)
Q Consensus 385 ~ 385 (521)
.
T Consensus 249 ~ 249 (276)
T cd03241 249 V 249 (276)
T ss_pred c
Confidence 3
No 409
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.59 E-value=7.4e-15 Score=141.76 Aligned_cols=139 Identities=15% Similarity=0.030 Sum_probs=88.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC----C-CCCceeeecCCccccCCCCHHHHHHHHHHhccCch
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD----S-SLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGS 245 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~----~-~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~ 245 (521)
..+++|+++.. |++++|+||||||||||||+|+|... . ......++.|.+.+++.+|+.|++.++...
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~----- 86 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISY----- 86 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccCh-----
Confidence 46888887776 79999999999999999999998541 0 001113455667788899999988764311
Q ss_pred hhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHH
Q 044321 246 RYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEML 325 (521)
Q Consensus 246 ~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraL 325 (521)
+ .. +. ..+..+++.+++
T Consensus 87 -~-------~~------------------------e~-~~~~~iL~~~~~------------------------------ 103 (199)
T cd03283 87 -F-------YA------------------------EL-RRLKEIVEKAKK------------------------------ 103 (199)
T ss_pred -H-------HH------------------------HH-HHHHHHHHhccC------------------------------
Confidence 0 00 00 123445554431
Q ss_pred cCCCcEEEEeCCChhhHHHHHHH-----HHHHHHHcCCeEEEEEecChhHHHhh--cCeEEEEe
Q 044321 326 VGPAQALFMDEISNSTTFQIVNS-----LRQFIHILEGTILISLLQPAPETYDL--FDDIILIS 382 (521)
Q Consensus 326 v~~P~iLlLDEPTs~~~~~i~~~-----L~~l~~~~~~t~ii~i~h~~~~~~~l--~D~VivL~ 382 (521)
.+|+++|+|||+++++...... +..+. + .++++++++|+...+..+ .++|..++
T Consensus 104 -~~p~llllDEp~~glD~~~~~~l~~~ll~~l~-~-~~~tiiivTH~~~~~~~~~~~~~v~~~~ 164 (199)
T cd03283 104 -GEPVLFLLDEIFKGTNSRERQAASAAVLKFLK-N-KNTIGIISTHDLELADLLDLDSAVRNYH 164 (199)
T ss_pred -CCCeEEEEecccCCCCHHHHHHHHHHHHHHHH-H-CCCEEEEEcCcHHHHHhhhcCCCeEEEE
Confidence 6899999999999887654432 23332 2 345666667776665544 45555543
No 410
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.58 E-value=6e-15 Score=142.42 Aligned_cols=84 Identities=13% Similarity=0.043 Sum_probs=59.1
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHH-H---HHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSL-R---QFIHILEGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L-~---~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
+.+|++++| +..+.+++.+|+++|+|||+++++......+ . +.+.. .++++++++|+. ++...++++..+..|
T Consensus 90 s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~-~~~~vi~~tH~~-~~~~~~~~~~~l~~~ 166 (202)
T cd03243 90 STFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLE-KGCRTLFATHFH-ELADLPEQVPGVKNL 166 (202)
T ss_pred eeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEECChH-HHHHHhhcCCCeEEE
Confidence 347776665 6666778899999999999998887544433 2 22222 245556666764 667789999999999
Q ss_pred EEEEecCHhHH
Q 044321 385 HIVYQGPREYV 395 (521)
Q Consensus 385 ~iv~~G~~~~v 395 (521)
++...+...++
T Consensus 167 ~~~~~~~~~~~ 177 (202)
T cd03243 167 HMEELITTGGL 177 (202)
T ss_pred EEEEEecCCee
Confidence 99988865443
No 411
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.57 E-value=4.3e-14 Score=142.63 Aligned_cols=77 Identities=16% Similarity=0.180 Sum_probs=62.6
Q ss_pred CCCCChHHHHHHHHHHHHc---------CCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhc---
Q 044321 308 LRGISGGQRKRVTTGEMLV---------GPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLF--- 375 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv---------~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~--- 375 (521)
..-+|+||||+++||++|+ .+|++++|||||+++|....+.+.+.+.... .+++++| +.+.+..+|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~-q~ii~~~-~~~~~~~~~~~~ 258 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV-QTFVTTT-DLADFDALWLRR 258 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC-CEEEEeC-CchhccchhccC
Confidence 3348999999999999985 7999999999999999999998888876544 4555544 445666777
Q ss_pred CeEEEEeCCEE
Q 044321 376 DDIILISNGHI 386 (521)
Q Consensus 376 D~VivL~~G~i 386 (521)
++++.|++|++
T Consensus 259 ~~i~~l~~g~i 269 (270)
T cd03242 259 AQIFRVDAGTL 269 (270)
T ss_pred ccEEEEeCcEE
Confidence 78999999986
No 412
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.54 E-value=4.2e-14 Score=137.02 Aligned_cols=139 Identities=16% Similarity=0.080 Sum_probs=86.1
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEM 249 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~ 249 (521)
+..+.+|+++.+++|++++|+||||+|||||+++|++..--. ....++ +.....+++.+++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la-~~G~~v---pa~~~~l~~~d~I--------------- 75 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMA-QIGCFV---PAEYATLPIFNRL--------------- 75 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHH-HcCCCc---chhhcCccChhhe---------------
Confidence 347999999999999999999999999999999998742100 001122 1122233333333
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCC
Q 044321 250 LAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPA 329 (521)
Q Consensus 250 ~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P 329 (521)
+..++..+..+. ..+.+|+|++|. ..+.+++.+|
T Consensus 76 ----------------------------------------~~~~~~~d~~~~-----~~S~fs~e~~~~-~~il~~~~~~ 109 (204)
T cd03282 76 ----------------------------------------LSRLSNDDSMER-----NLSTFASEMSET-AYILDYADGD 109 (204)
T ss_pred ----------------------------------------eEecCCccccch-----hhhHHHHHHHHH-HHHHHhcCCC
Confidence 222333322222 224599999975 5556688999
Q ss_pred cEEEEeCCChhhHHHH-----HHHHHHHHHHcCCeEEEEEecChhHHHhhc
Q 044321 330 QALFMDEISNSTTFQI-----VNSLRQFIHILEGTILISLLQPAPETYDLF 375 (521)
Q Consensus 330 ~iLlLDEPTs~~~~~i-----~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~ 375 (521)
+++|||||+++++... ...+..+.. . +++++++||..+.+..+.
T Consensus 110 ~lvllDE~~~gt~~~~~~~l~~~il~~l~~-~-~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 110 SLVLIDELGRGTSSADGFAISLAILECLIK-K-ESTVFFATHFRDIAAILG 158 (204)
T ss_pred cEEEeccccCCCCHHHHHHHHHHHHHHHHh-c-CCEEEEECChHHHHHHhh
Confidence 9999999988775532 233333332 3 455555677765554433
No 413
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.54 E-value=7.1e-14 Score=161.20 Aligned_cols=106 Identities=23% Similarity=0.247 Sum_probs=85.2
Q ss_pred hHHHHHHHHcCCCcc-ccccccCccCCCCChHHHHHHHHHHHHcCCC--cEEEEeCCChhhHHHHHHHHHHHHHHc--CC
Q 044321 284 VITDYILKILGLDVC-ADTMVGDEILRGISGGQRKRVTTGEMLVGPA--QALFMDEISNSTTFQIVNSLRQFIHIL--EG 358 (521)
Q Consensus 284 ~~~~~iL~~lgL~~~-~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P--~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~ 358 (521)
.+++ .|+.+||.+. .|+.+. .|||||+|||.||++|+.+| ++|||||||++++....+.|.++++++ .+
T Consensus 468 ~rl~-~L~~vGL~~l~l~r~~~-----~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G 541 (943)
T PRK00349 468 ERLK-FLVDVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLG 541 (943)
T ss_pred HHHH-HhhccccCCCCCCCchh-----hCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCC
Confidence 3444 6888999865 676665 59999999999999999997 999999999998887766666665443 34
Q ss_pred eEEEEEecChhHHHhhcCeEEEE------eCCEEEEecCHhHHH
Q 044321 359 TILISLLQPAPETYDLFDDIILI------SNGHIVYQGPREYVL 396 (521)
Q Consensus 359 t~ii~i~h~~~~~~~l~D~VivL------~~G~iv~~G~~~~v~ 396 (521)
.+||+++|+..++. .||+|++| .+|++++.|+++++.
T Consensus 542 ~TVIvVeH~~~~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 542 NTLIVVEHDEDTIR-AADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred CEEEEEeCCHHHHH-hCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 55666777777664 69999999 999999999998874
No 414
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.52 E-value=1.5e-13 Score=158.27 Aligned_cols=102 Identities=23% Similarity=0.243 Sum_probs=80.9
Q ss_pred HHHHcCCCcc-ccccccCccCCCCChHHHHHHHHHHHHcCCC--cEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEE
Q 044321 289 ILKILGLDVC-ADTMVGDEILRGISGGQRKRVTTGEMLVGPA--QALFMDEISNSTTFQIVNSLRQFIHIL--EGTILIS 363 (521)
Q Consensus 289 iL~~lgL~~~-~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P--~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~ 363 (521)
.|..+||... .++.+ .+|||||+|||.||++|+.+| ++|||||||++++....+.|.++++++ .+.+||+
T Consensus 470 ~L~~vgL~~l~l~r~~-----~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIv 544 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAA-----GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIV 544 (924)
T ss_pred hHhhccccccccCCCc-----CcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3677888754 45544 469999999999999999986 899999999998887666666655443 2455566
Q ss_pred EecChhHHHhhcCeEEEE------eCCEEEEecCHhHHH
Q 044321 364 LLQPAPETYDLFDDIILI------SNGHIVYQGPREYVL 396 (521)
Q Consensus 364 i~h~~~~~~~l~D~VivL------~~G~iv~~G~~~~v~ 396 (521)
++|+...+ ..||+|++| ++|+|++.|+++++.
T Consensus 545 VeHd~~~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 545 VEHDEETI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred EECCHHHH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 67776665 589999999 899999999998874
No 415
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.50 E-value=1.7e-13 Score=141.54 Aligned_cols=172 Identities=26% Similarity=0.299 Sum_probs=116.1
Q ss_pred CCCcceeeeeeEEEEeCCc-----EEEEEcCCCChHHHHHHHHhCCCCCCCCce------eeecCCccccCCCCHHHHHH
Q 044321 167 RKKHLTILKDVSGIIRPGR-----MTLLLGPPGSVKTTLLLALAGKLDSSLKNR------CDISQHDVHIGEMTVRETLA 235 (521)
Q Consensus 167 ~~~~~~iL~dVS~~I~~Ge-----~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~------~~v~q~d~~~~~lTV~E~l~ 235 (521)
+.+.+.-+-+..+.|+.|+ ++..+|.||-|||||+++|+|.++|+.... .|-+|.-.--.+.||++.+.
T Consensus 345 Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~ 424 (592)
T KOG0063|consen 345 YPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLH 424 (592)
T ss_pred cCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHH
Confidence 3444567888888888875 789999999999999999999998875422 45556544445667777543
Q ss_pred HHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHH
Q 044321 236 FSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQ 315 (521)
Q Consensus 236 f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGq 315 (521)
--.+- + ++ ..+.+..+++-|.+++..|.-|. +|||||
T Consensus 425 ~kIr~----------------a-------------y~---------~pqF~~dvmkpL~ie~i~dqevq-----~lSgge 461 (592)
T KOG0063|consen 425 TKIRD----------------A-------------YM---------HPQFVNDVMKPLQIENIIDQEVQ-----GLSGGE 461 (592)
T ss_pred HHhHh----------------h-------------hc---------CHHHHHhhhhhhhHHHHHhHHhh-----cCCchh
Confidence 21110 0 00 11234456666677766665554 699999
Q ss_pred HHHHHHHHHHcCCCcEEEEeCCChhhHHH----HHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 316 RKRVTTGEMLVGPAQALFMDEISNSTTFQ----IVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 316 rQRvaIAraLv~~P~iLlLDEPTs~~~~~----i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
.|||++|.+|-.++++++.|||++-+|.+ ..+.+++++-..+.|..+ +.|+.--.--++|+|++..
T Consensus 462 lQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafv-VEhdfImaTYladrvivf~ 531 (592)
T KOG0063|consen 462 LQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFV-VEHDFIMATYLADRVIVFE 531 (592)
T ss_pred hHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhh-hhhHHHHHHhhcceeEEEe
Confidence 99999999999999999999999954432 233445554333455555 4565443445789988764
No 416
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.49 E-value=1.7e-13 Score=133.97 Aligned_cols=144 Identities=17% Similarity=0.140 Sum_probs=89.9
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCC-------ccccCCCCHHHHHHHHHHhccC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQH-------DVHIGEMTVRETLAFSARCQGV 243 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~-------d~~~~~lTV~E~l~f~~~~~~~ 243 (521)
..+.+|+++.+.+ ++++|+|||||||||||++|++..-.. ....+++.. +..++.+++.++
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~-~~g~~vp~~~~~i~~~~~i~~~~~~~~~---------- 85 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLA-QIGSFVPASKAEIGVVDRIFTRIGASDD---------- 85 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHh-ccCCeeccccceecceeeEeccCCchhh----------
Confidence 4689999999988 999999999999999999998632100 000111110 111222222222
Q ss_pred chhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHH----H
Q 044321 244 GSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKR----V 319 (521)
Q Consensus 244 ~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQR----v 319 (521)
+|+|+.+. +
T Consensus 86 -------------------------------------------------------------------ls~g~s~f~~e~~ 98 (216)
T cd03284 86 -------------------------------------------------------------------LAGGRSTFMVEMV 98 (216)
T ss_pred -------------------------------------------------------------------hccCcchHHHHHH
Confidence 44444332 2
Q ss_pred HHHHHH--cCCCcEEEEeCC---ChhhHHHH-HHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCH
Q 044321 320 TTGEML--VGPAQALFMDEI---SNSTTFQI-VNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPR 392 (521)
Q Consensus 320 aIAraL--v~~P~iLlLDEP---Ts~~~~~i-~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~ 392 (521)
.+++++ +.+|+++||||| |++++... ...+.+.+.+. +.++| ++||. .++.+++|++..+.+|++...+..
T Consensus 99 ~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi-~~TH~-~~l~~l~~~~~~v~~~~~~~~~~~ 176 (216)
T cd03284 99 ETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTL-FATHY-HELTELEGKLPRVKNFHVAVKEKG 176 (216)
T ss_pred HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEE-EEeCc-HHHHHHhhcCCCeEEEEEEEEeeC
Confidence 355444 579999999999 77666532 23333333333 44554 45666 477888998888888998877766
Q ss_pred hHH
Q 044321 393 EYV 395 (521)
Q Consensus 393 ~~v 395 (521)
+++
T Consensus 177 ~~l 179 (216)
T cd03284 177 GGV 179 (216)
T ss_pred CeE
Confidence 655
No 417
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.31 E-value=7.6e-13 Score=126.19 Aligned_cols=78 Identities=12% Similarity=0.028 Sum_probs=45.3
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHH-HHH---HHHcCCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSL-RQF---IHILEGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L-~~l---~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
+.+|+|++|...+.. .+.+|+++|+|||+++++......+ ..+ ..+..+.+++++||.. ++.+++|..--+..+
T Consensus 60 s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~-~l~~~~~~~~~v~~~ 137 (185)
T smart00534 60 STFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH-ELTKLADEHPGVRNL 137 (185)
T ss_pred cHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH-HHHHHhhcCccceEE
Confidence 358888886433333 2459999999999998877532222 222 2222234455556665 577788754444444
Q ss_pred EEEE
Q 044321 385 HIVY 388 (521)
Q Consensus 385 ~iv~ 388 (521)
++..
T Consensus 138 ~~~~ 141 (185)
T smart00534 138 HMSA 141 (185)
T ss_pred EEEE
Confidence 4433
No 418
>PRK00064 recF recombination protein F; Reviewed
Probab=99.28 E-value=3.1e-10 Score=119.28 Aligned_cols=79 Identities=22% Similarity=0.243 Sum_probs=62.2
Q ss_pred cCCCCChHHHHHHHHHHHHc---------CCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhc--
Q 044321 307 ILRGISGGQRKRVTTGEMLV---------GPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLF-- 375 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv---------~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~-- 375 (521)
....+|+||+|++.||..|+ .+|+||+||||++.+|..-.+.|.+++...+..+++++ |+.+.+...+
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~~~qv~it~-~~~~~~~~~~~~ 348 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGLGAQVFITT-TDLEDLADLLEN 348 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhccCCEEEEEc-CChhhhhhhhcc
Confidence 34569999999999999885 79999999999999999988888887764444555554 4445555554
Q ss_pred CeEEEEeCCEE
Q 044321 376 DDIILISNGHI 386 (521)
Q Consensus 376 D~VivL~~G~i 386 (521)
++++.|.+|++
T Consensus 349 ~~i~~v~~G~i 359 (361)
T PRK00064 349 AKIFHVEQGKI 359 (361)
T ss_pred CcEEEEeCCEE
Confidence 47999999987
No 419
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.20 E-value=1.4e-10 Score=116.95 Aligned_cols=27 Identities=44% Similarity=0.525 Sum_probs=24.9
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
.-++|+||||||||||+++|+|.+.+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~ 138 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG 138 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC
Confidence 578999999999999999999998875
No 420
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.19 E-value=3.8e-10 Score=109.99 Aligned_cols=72 Identities=24% Similarity=0.355 Sum_probs=51.6
Q ss_pred CCChHHHHHHHHHHHH----cCCCcEEEEeCCChhhHHHHHHHHHHHHHHcC-CeEEEEEecChhHHHhhcCeEEEEe
Q 044321 310 GISGGQRKRVTTGEML----VGPAQALFMDEISNSTTFQIVNSLRQFIHILE-GTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 310 ~LSGGqrQRvaIAraL----v~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~-~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
.+|||||.+++||-.| ..+.+++|||||.+++|..-...+.+++.+.. .+-+|+++|. +.++..+|+.+.+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~-~~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHN-PEMFEDADKLIGVT 212 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S--HHHHTT-SEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccc
Confidence 4999999999999554 36889999999999999998888888877653 3445555555 57888999887764
No 421
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.18 E-value=1.3e-10 Score=120.51 Aligned_cols=179 Identities=22% Similarity=0.229 Sum_probs=105.4
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHH-HH--HHhccCchhhHHHHHHHHHH
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLA-FS--ARCQGVGSRYEMLAELTRRE 257 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~-f~--~~~~~~~~~~~~~~~l~~~e 257 (521)
-.||++.+++|-||-||||-|++|+|.++|+.+. |... ..++++. +. ..++..+.+. ....
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~kpnlg~--~~~p--------p~w~~il~~frgselq~yftk~------le~~ 160 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR--YDNP--------PDWQEILTYFRGSELQNYFTKI------LEDN 160 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCCCCCCCC--CCCC--------cchHHHhhhhhhHHHhhhhhhh------cccc
Confidence 3589999999999999999999999999987432 2111 1111111 10 0111110000 0000
Q ss_pred HhcCCCCCCChHHHHHHHh------hhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcE
Q 044321 258 KAAGIKPDPDIDVFMKAAA------TEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQA 331 (521)
Q Consensus 258 ~~~~i~~~~~~~~~~~~~~------~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~i 331 (521)
...-++|. .++.+-++.. +.....+...+++++.+.|.+..+.-+. .|||||-||.+||.+.+..+++
T Consensus 161 lk~~~kpQ-yvd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~-----~lsggelqrfaia~~~vq~adv 234 (592)
T KOG0063|consen 161 LKAIIKPQ-YVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVE-----QLSGGELQRFAIAMVCVQKADV 234 (592)
T ss_pred ccCcCChH-HHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhh-----hcccchhhhhhhhhhhhhhcce
Confidence 00000000 1111111111 0111112234567788888887776665 4999999999999999999999
Q ss_pred EEEeCCChhhHHHH----HHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 332 LFMDEISNSTTFQI----VNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 332 LlLDEPTs~~~~~i----~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
.++|||++.+|..- ...++.++. ...-||++.|+....--+.|-|.+|..
T Consensus 235 yMFDEpSsYLDVKQRLkaA~~IRsl~~--p~~YiIVVEHDLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 235 YMFDEPSSYLDVKQRLKAAITIRSLIN--PDRYIIVVEHDLSVLDYLSDFICCLYG 288 (592)
T ss_pred eEecCCcccchHHHhhhHHHHHHHhhC--CCCeEEEEEeechHHHhhhcceeEEec
Confidence 99999999776543 334444442 234555666776665567888888864
No 422
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.18 E-value=1.2e-10 Score=113.76 Aligned_cols=62 Identities=11% Similarity=0.061 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHH----H-HHHHHHHHHH-cCCeEEEEEecChhHHHhh
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQ----I-VNSLRQFIHI-LEGTILISLLQPAPETYDL 374 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~----i-~~~L~~l~~~-~~~t~ii~i~h~~~~~~~l 374 (521)
.-+-||++++++++.+|+++|+|||+++++.. + ...++.+.+. .++.++++++|+.+.+...
T Consensus 93 ~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 93 MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 35679999999999999999999999988753 2 2344444332 1234566677776555443
No 423
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.15 E-value=1e-10 Score=133.44 Aligned_cols=59 Identities=10% Similarity=0.052 Sum_probs=41.5
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHH-HHH---HHHcCCeEEEEEecChh
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSL-RQF---IHILEGTILISLLQPAP 369 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L-~~l---~~~~~~t~ii~i~h~~~ 369 (521)
..+|+|+++++.|++++ .+|+++|||||+++++......| ..+ +.. .++.++++||..+
T Consensus 384 StfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~-~g~~viitTH~~e 446 (771)
T TIGR01069 384 STFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLK-QNAQVLITTHYKE 446 (771)
T ss_pred hHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHH
Confidence 46999999999998876 78999999999998876554444 222 222 3444555566543
No 424
>PRK13695 putative NTPase; Provisional
Probab=99.10 E-value=5.7e-11 Score=111.87 Aligned_cols=78 Identities=14% Similarity=0.201 Sum_probs=63.0
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCC--ChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEI--SNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEP--Ts~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
.+||+++-++.+++..+.+|+++++||| +...+....+.+.+++ +.+.++|+++ |. ..+..++|+|..+.+|+|+
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~-~~~~~~i~v~-h~-~~~~~~~~~i~~~~~~~i~ 154 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL-DSEKPVIATL-HR-RSVHPFVQEIKSRPGGRVY 154 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH-hCCCeEEEEE-Cc-hhhHHHHHHHhccCCcEEE
Confidence 4999999999999999999999999994 4477788888888887 3455555554 54 3566789999999999997
Q ss_pred Eec
Q 044321 388 YQG 390 (521)
Q Consensus 388 ~~G 390 (521)
+.-
T Consensus 155 ~~~ 157 (174)
T PRK13695 155 ELT 157 (174)
T ss_pred EEc
Confidence 653
No 425
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.05 E-value=4.6e-10 Score=112.03 Aligned_cols=177 Identities=15% Similarity=0.198 Sum_probs=96.0
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC-Cce--eeecCCccccCCCCHHHHHHHHHH------hccC-chhhH
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL-KNR--CDISQHDVHIGEMTVRETLAFSAR------CQGV-GSRYE 248 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~-~~~--~~v~q~d~~~~~lTV~E~l~f~~~------~~~~-~~~~~ 248 (521)
+.|..|+.++|+||+|+|||||++.|++.+.... ... .++.++. ..++.+-+.--.. .... ..+..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er----~~ev~el~~~I~~~~v~~~~~~~~~~~~~ 86 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER----PEEVTDMQRSVKGEVIASTFDEPPERHVQ 86 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC----CccHHHHHHHhccEEEEecCCCCHHHHHH
Confidence 4678999999999999999999999999776531 111 2323331 1244443322100 0000 00000
Q ss_pred HHHHH-HHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHH--------HHHH
Q 044321 249 MLAEL-TRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQ--------RKRV 319 (521)
Q Consensus 249 ~~~~l-~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGq--------rQRv 319 (521)
..... ...+. ....+...-..+|++- .+...+++.++. .++.+|||+ +||+
T Consensus 87 ~~~~~~~~a~~----------------~~~~G~~vll~iDei~---r~a~a~~ev~~~-~G~~~sgG~~~~~~~~~~q~~ 146 (249)
T cd01128 87 VAEMVLEKAKR----------------LVEHGKDVVILLDSIT---RLARAYNTVVPP-SGKILSGGVDANALHKPKRFF 146 (249)
T ss_pred HHHHHHHHHHH----------------HHHCCCCEEEEEECHH---Hhhhhhhhcccc-CCCCCCCCcChhhhhhhHHHH
Confidence 00000 00000 0000100001111111 123334454443 445689999 9999
Q ss_pred HHHHHHcCCCcEEEEeCCChhhHH----H-HHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 320 TTGEMLVGPAQALFMDEISNSTTF----Q-IVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 320 aIAraLv~~P~iLlLDEPTs~~~~----~-i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
++||++..+++|.+| ||+.++. . ++ +..+ ...+.|.|++. |. ......+|.|.+|..|.+
T Consensus 147 ~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~-~~~~~~~ivls-~~-la~~~~~paI~vl~s~sr 211 (249)
T cd01128 147 GAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEF-KGTGNMELVLD-RR-LAERRIFPAIDILKSGTR 211 (249)
T ss_pred HHhcCCCCCCceEEe--eeheecCCCcccchH--HHHH-hcCCCcEEEEc-hH-HhhCCCCCeEEEcCCCCc
Confidence 999999999999999 9986541 1 22 2222 21234555544 43 345678999999999987
No 426
>PRK14079 recF recombination protein F; Provisional
Probab=99.04 E-value=4.4e-09 Score=110.12 Aligned_cols=75 Identities=16% Similarity=0.129 Sum_probs=60.4
Q ss_pred CCChHHHHHHHHHHHHc---------CCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEE
Q 044321 310 GISGGQRKRVTTGEMLV---------GPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv---------~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
-+|+||+|++.+|..|+ ..|++++||||++.+|..-.+.+.+++.... -++|+.++ ..+.+|+++.
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~-q~~it~t~----~~~~~~~~~~ 337 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP-QAIVAGTE----APPGAALTLR 337 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC-cEEEEcCC----CCCCCceEEE
Confidence 38999999999999998 9999999999999999988888877764332 34444443 3468999999
Q ss_pred EeCCEEEEe
Q 044321 381 ISNGHIVYQ 389 (521)
Q Consensus 381 L~~G~iv~~ 389 (521)
+.+|++.-.
T Consensus 338 ~~~~~~~~~ 346 (349)
T PRK14079 338 IEAGVFTPE 346 (349)
T ss_pred EeccEecCC
Confidence 999987543
No 427
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.02 E-value=3.3e-10 Score=98.36 Aligned_cols=63 Identities=21% Similarity=0.048 Sum_probs=47.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCC-C--C-CC---------CCceeeecCCccccCCCCHHHHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGK-L--D-SS---------LKNRCDISQHDVHIGEMTVRETLAF 236 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~-l--~-~~---------~~~~~~v~q~d~~~~~lTV~E~l~f 236 (521)
..+|+++++.+++|++++|+||||||||||+++|..- . . .+ ....++++|+ ....|++|||.+
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~~G~i~~~g~di~~~~~~~~~~~~~~~~q~---lf~~ti~~Ni~~ 77 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELIKRKHRLVGDDNVEIREDSKDELIGRNPEL---GLEIRLRLNIFL 77 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhhCCeEEEeeEeHHHhhhhhcCCEEEEechh---cchhhHHhhcee
Confidence 4689999999999999999999999999999998720 0 0 00 0112455554 556899999987
No 428
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.01 E-value=3.3e-09 Score=100.20 Aligned_cols=73 Identities=14% Similarity=0.123 Sum_probs=48.3
Q ss_pred CCCChHHHH------HHHHHHHHcCCCcEEEEeCCChhhH---HHHHHHHHHHH---HHcCCeEEEEEecChhH------
Q 044321 309 RGISGGQRK------RVTTGEMLVGPAQALFMDEISNSTT---FQIVNSLRQFI---HILEGTILISLLQPAPE------ 370 (521)
Q Consensus 309 r~LSGGqrQ------RvaIAraLv~~P~iLlLDEPTs~~~---~~i~~~L~~l~---~~~~~t~ii~i~h~~~~------ 370 (521)
..+|+|++| ......+...+|+++++|||++.++ ......+.+++ +..+.|++++ +|....
T Consensus 70 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v-~~~~~~~~~~~~ 148 (187)
T cd01124 70 DEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLT-SEQSGLEGTGFG 148 (187)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEE-eccccCCCcccC
Confidence 458999998 4445555678999999999999766 43333333332 2235555555 454332
Q ss_pred ---HHhhcCeEEEEe
Q 044321 371 ---TYDLFDDIILIS 382 (521)
Q Consensus 371 ---~~~l~D~VivL~ 382 (521)
+..+||.|+.|+
T Consensus 149 ~~~~~~~aD~ii~l~ 163 (187)
T cd01124 149 GGDVEYLVDGVIRLR 163 (187)
T ss_pred cCceeEeeeEEEEEE
Confidence 567899999987
No 429
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.00 E-value=1.1e-09 Score=107.60 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=35.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
..+.+|+++.+.+|++++|+||||+||||||++|++.
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~ 54 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALI 54 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999999999999999993
No 430
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.99 E-value=2.4e-10 Score=130.66 Aligned_cols=77 Identities=14% Similarity=0.139 Sum_probs=51.3
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHH----HHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSL----RQFIHILEGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L----~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
..+|+|+++++.|++++ .+|+++|||||+++++......+ .+.+... +.+++++||+.+.....+++..++ ++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~-~~~vIitTH~~el~~~~~~~~~v~-~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKR-GAKIIATTHYKELKALMYNREGVE-NA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEECChHHHHHHHhcCCCeE-EE
Confidence 46999999999999988 88999999999998886533332 2222333 445555666655555555555443 34
Q ss_pred EEEE
Q 044321 385 HIVY 388 (521)
Q Consensus 385 ~iv~ 388 (521)
.+.+
T Consensus 466 ~~~~ 469 (782)
T PRK00409 466 SVEF 469 (782)
T ss_pred EEEE
Confidence 4444
No 431
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.94 E-value=1.3e-09 Score=120.65 Aligned_cols=78 Identities=15% Similarity=0.261 Sum_probs=62.4
Q ss_pred CCCCChHHHHHHHHHHHHc----------CCCcEEEEeCCC-hhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcC
Q 044321 308 LRGISGGQRKRVTTGEMLV----------GPAQALFMDEIS-NSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFD 376 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv----------~~P~iLlLDEPT-s~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D 376 (521)
+..||||||||++||++|+ .+|++||||||| +++|......+.+++....+.+|++++|. +.....||
T Consensus 466 ~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~iiiish~-~~~~~~~d 544 (562)
T PHA02562 466 YASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSLKDTNVFVISHK-DHDPQKFD 544 (562)
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhCCCCeEEEEECc-hhchhhhh
Confidence 4679999999999999887 599999999998 67998888888777766545555556666 45667899
Q ss_pred eEEEEeC-CEE
Q 044321 377 DIILISN-GHI 386 (521)
Q Consensus 377 ~VivL~~-G~i 386 (521)
++++|.+ |+.
T Consensus 545 ~~~~l~~~~~~ 555 (562)
T PHA02562 545 RHLKMEKVGRF 555 (562)
T ss_pred cEEEEEEECCe
Confidence 9999986 554
No 432
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.93 E-value=8.5e-09 Score=101.01 Aligned_cols=38 Identities=26% Similarity=0.204 Sum_probs=35.2
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
...+-+|+++.+++|++++|.||||+|||||++.+++.
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~ 53 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLA 53 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHH
Confidence 34789999999999999999999999999999999984
No 433
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.91 E-value=2.3e-08 Score=107.35 Aligned_cols=42 Identities=17% Similarity=0.229 Sum_probs=38.3
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL 212 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~ 212 (521)
...+++++ +.+.+|++++|+|+||+|||||+++|+|...++.
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~ 186 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADL 186 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCe
Confidence 35689999 9999999999999999999999999999887753
No 434
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.89 E-value=2.9e-09 Score=109.67 Aligned_cols=71 Identities=11% Similarity=0.112 Sum_probs=50.8
Q ss_pred HHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 320 TTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 320 aIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
.++.+|-.+|+++++|||.+. +....++.+. .+...+++++|... +.+..||++.|..|++...|.+.+++
T Consensus 210 ~l~~~Lr~~pd~ii~gE~r~~---e~~~~l~a~~--~g~~~~i~T~Ha~~-~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 210 LLQSCLRMRPDRIILGELRGD---EAFDFIRAVN--TGHPGSITTLHAGS-PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHhcCCCCeEEEeccCCH---HHHHHHHHHh--cCCCeEEEEEeCCC-HHHHHHHHHHHhhccccccCCCHHHH
Confidence 466788899999999999973 3444454443 34444444555543 66779999999999999888877664
No 435
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.87 E-value=2.2e-08 Score=98.96 Aligned_cols=40 Identities=25% Similarity=0.258 Sum_probs=31.3
Q ss_pred EEEeCCcEEEEEcCCCChHHHH-HHHHhCCCCCCCCceeeec
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTL-LLALAGKLDSSLKNRCDIS 219 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTL-Lk~LaG~l~~~~~~~~~v~ 219 (521)
+-+++|++++|.|+|||||||| ++.+++...+. ....|+.
T Consensus 19 ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-~~~~yi~ 59 (230)
T PRK08533 19 GGIPAGSLILIEGDESTGKSILSQRLAYGFLQNG-YSVSYVS 59 (230)
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEEe
Confidence 3489999999999999999999 68988866543 2335554
No 436
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.85 E-value=6.2e-09 Score=115.65 Aligned_cols=76 Identities=16% Similarity=0.175 Sum_probs=59.0
Q ss_pred CCCChHHHHHHHHHHHHcCC----CcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 309 RGISGGQRKRVTTGEMLVGP----AQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~----P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+.+||||+|||+||++++.. |++|||||||++++......+.+++... .+.+||++||... +...||++++|++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~-~~~~ad~~~~l~k 517 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQ-VAAHADAHFKVEK 517 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhcCeEEEEEE
Confidence 46899999999999999875 6999999999988877666666655543 3455555666654 4469999999987
Q ss_pred CE
Q 044321 384 GH 385 (521)
Q Consensus 384 G~ 385 (521)
|.
T Consensus 518 ~~ 519 (563)
T TIGR00634 518 EG 519 (563)
T ss_pred cc
Confidence 64
No 437
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.84 E-value=2.4e-08 Score=106.55 Aligned_cols=152 Identities=16% Similarity=0.117 Sum_probs=93.9
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEM 249 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~ 249 (521)
...+++++ +.+.+|+.++|+|+||+|||||+++|+|...++....+.+.+. ..+|.|.+..-
T Consensus 143 GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGer-----g~ev~e~~~~~------------ 204 (432)
T PRK06793 143 GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGER-----GREVKDFIRKE------------ 204 (432)
T ss_pred CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCC-----cccHHHHHHHH------------
Confidence 45688885 9999999999999999999999999999887653322233222 24455433211
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHc---
Q 044321 250 LAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLV--- 326 (521)
Q Consensus 250 ~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv--- 326 (521)
+..-|+... ..+ .....-|.|+|+|++.+.+.+
T Consensus 205 ----------------------------------------l~~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~~iAEy 240 (432)
T PRK06793 205 ----------------------------------------LGEEGMRKS--VVV--VATSDESHLMQLRAAKLATSIAEY 240 (432)
T ss_pred ----------------------------------------hhhccccee--EEE--EECCCCCHHHHHHHHHHHHHHHHH
Confidence 111112110 111 123458999999999998877
Q ss_pred ----CCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 327 ----GPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 327 ----~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
+++-+|++|+||...+.. +.+..++.+. +.+..+.+ |+ +.+ ++|.-....|.|...+
T Consensus 241 fr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s-~l-~~L---~ERag~~~~GSiT~~~ 304 (432)
T PRK06793 241 FRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMES-YM-KKL---LERSGKTQKGSITGIY 304 (432)
T ss_pred HHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeec-cc-hhH---HHHhccCCCcceEEEE
Confidence 899999999999966654 3333222222 23344433 32 333 3444445788875544
No 438
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.84 E-value=2.5e-08 Score=90.81 Aligned_cols=29 Identities=10% Similarity=0.105 Sum_probs=24.7
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCCh
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISN 339 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs 339 (521)
.+.++.+++..+.+...+|+++++||++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~ 96 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTR 96 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHH
Confidence 45566677888899999999999999996
No 439
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.81 E-value=1.1e-08 Score=121.50 Aligned_cols=79 Identities=13% Similarity=0.081 Sum_probs=63.5
Q ss_pred ccCCCCChHHHHHHHHHHHHcC----------CCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHh
Q 044321 306 EILRGISGGQRKRVTTGEMLVG----------PAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYD 373 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~----------~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~ 373 (521)
..+++|||||++||+||+||+. +|++||+||||+++|......+.+.+..+ .+.+|++++|.......
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~ 1025 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRER 1025 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHh
Confidence 3556799999999999999985 79999999999998887655555544332 45566667788888999
Q ss_pred hcCeEEEEeCC
Q 044321 374 LFDDIILISNG 384 (521)
Q Consensus 374 l~D~VivL~~G 384 (521)
++|+|+|+..|
T Consensus 1026 ~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1026 IPHRILVKKTN 1036 (1042)
T ss_pred hCCEEEEEECC
Confidence 99999999754
No 440
>PRK10869 recombination and repair protein; Provisional
Probab=98.81 E-value=1.2e-08 Score=112.78 Aligned_cols=75 Identities=16% Similarity=0.236 Sum_probs=58.9
Q ss_pred CCCChHHHHHHHHHHHHcC----CCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 309 RGISGGQRKRVTTGEMLVG----PAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~----~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+.+||||+|||+||++++. +|+++|||||+++++......+.+++... .+++||++||.. .+..+||+.+++.+
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~-~~~~~ad~~~~v~k 507 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLP-QVAGCGHQHFFVSK 507 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHhCCEEEEEec
Confidence 3479999999999999996 68999999999988877777666666544 334555566665 45689999999987
Q ss_pred C
Q 044321 384 G 384 (521)
Q Consensus 384 G 384 (521)
+
T Consensus 508 ~ 508 (553)
T PRK10869 508 E 508 (553)
T ss_pred c
Confidence 4
No 441
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.78 E-value=9e-09 Score=99.94 Aligned_cols=46 Identities=9% Similarity=0.042 Sum_probs=39.3
Q ss_pred CChH--HHHHHHHHHHHcCCCcEEEEeCCC-----hhhHHHHHHHHHHHHHHc
Q 044321 311 ISGG--QRKRVTTGEMLVGPAQALFMDEIS-----NSTTFQIVNSLRQFIHIL 356 (521)
Q Consensus 311 LSGG--qrQRvaIAraLv~~P~iLlLDEPT-----s~~~~~i~~~L~~l~~~~ 356 (521)
.||+ |++++.||++++.+|+++++|||| +++|......+.++++.+
T Consensus 151 ~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~ 203 (215)
T PTZ00132 151 KSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA 203 (215)
T ss_pred CCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence 4444 999999999999999999999999 999888888887776643
No 442
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.72 E-value=4.2e-08 Score=94.40 Aligned_cols=60 Identities=18% Similarity=0.269 Sum_probs=43.1
Q ss_pred CCCCChHHHHHHHHHHHHcCCC---cEEEEeCCChhhHHHHHHHHHHHHHHcC--CeEEEEEecC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPA---QALFMDEISNSTTFQIVNSLRQFIHILE--GTILISLLQP 367 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P---~iLlLDEPTs~~~~~i~~~L~~l~~~~~--~t~ii~i~h~ 367 (521)
...+|.|++|.+.|+.+|...+ .++++|||.+++-+..+..|.+++.... +.-++++||.
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHS 298 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHS 298 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCcc
Confidence 3457999999999998887766 8999999999888887777777665442 3555656664
No 443
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.66 E-value=2.1e-08 Score=107.25 Aligned_cols=62 Identities=19% Similarity=0.172 Sum_probs=47.2
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLA 235 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~ 235 (521)
.+|++||++|++||+++|+|||||||||||+ +|+..|+.+...++.+.+..-+.-+-.+++.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR 81 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD 81 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH
Confidence 5899999999999999999999999999999 7777776554566655554434334444443
No 444
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.66 E-value=7.6e-07 Score=103.04 Aligned_cols=69 Identities=19% Similarity=0.285 Sum_probs=48.7
Q ss_pred HcCCCcEEEEeCCChhh-HHHHHHHHHHHHHHc--CCeEEEEEecChhHHH---------hhcCeEEEEeCCEEEEecCH
Q 044321 325 LVGPAQALFMDEISNST-TFQIVNSLRQFIHIL--EGTILISLLQPAPETY---------DLFDDIILISNGHIVYQGPR 392 (521)
Q Consensus 325 Lv~~P~iLlLDEPTs~~-~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~---------~l~D~VivL~~G~iv~~G~~ 392 (521)
+.++|+++++|||+..+ +....+.+.++++.. .+.++++++|....+. +.||.+++|.+|++...|..
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 36899999999999987 455555555444322 2345555667766654 68999999999998877754
Q ss_pred h
Q 044321 393 E 393 (521)
Q Consensus 393 ~ 393 (521)
+
T Consensus 729 ~ 729 (818)
T PRK13830 729 E 729 (818)
T ss_pred H
Confidence 3
No 445
>PRK03918 chromosome segregation protein; Provisional
Probab=98.63 E-value=7.5e-08 Score=112.34 Aligned_cols=75 Identities=24% Similarity=0.224 Sum_probs=57.5
Q ss_pred cCCCCChHHHH------HHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeE
Q 044321 307 ILRGISGGQRK------RVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDI 378 (521)
Q Consensus 307 ~~r~LSGGqrQ------RvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~V 378 (521)
.+..|||||++ |+++|++++.+|+++||||||+++|......+..++... .+.+||+++|+. .+...||++
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~-~~~~~~d~~ 863 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE-ELKDAADYV 863 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHhCCeE
Confidence 45679999999 555667888999999999999999887766666555432 234555666765 467899999
Q ss_pred EEEe
Q 044321 379 ILIS 382 (521)
Q Consensus 379 ivL~ 382 (521)
++|.
T Consensus 864 ~~l~ 867 (880)
T PRK03918 864 IRVS 867 (880)
T ss_pred EEEE
Confidence 9998
No 446
>PRK01156 chromosome segregation protein; Provisional
Probab=98.59 E-value=1.4e-07 Score=110.42 Aligned_cols=75 Identities=17% Similarity=0.186 Sum_probs=58.3
Q ss_pred cCCCCChHHHHHHHH------HHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHH----HcCC-eEEEEEecChhHHHhhc
Q 044321 307 ILRGISGGQRKRVTT------GEMLVGPAQALFMDEISNSTTFQIVNSLRQFIH----ILEG-TILISLLQPAPETYDLF 375 (521)
Q Consensus 307 ~~r~LSGGqrQRvaI------AraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~----~~~~-t~ii~i~h~~~~~~~l~ 375 (521)
.+..|||||++|++| |++|+.+|++++|||||+++|......+.+++. ..++ +++|++||+.. ....|
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~-~~~~~ 876 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE-LLSVA 876 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH-HHHhc
Confidence 466799999999975 589999999999999999998887666665543 2222 35666677765 45799
Q ss_pred CeEEEEe
Q 044321 376 DDIILIS 382 (521)
Q Consensus 376 D~VivL~ 382 (521)
|+++.+.
T Consensus 877 d~ii~~~ 883 (895)
T PRK01156 877 DVAYEVK 883 (895)
T ss_pred CeEEEEE
Confidence 9999997
No 447
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.57 E-value=1.2e-06 Score=97.77 Aligned_cols=101 Identities=24% Similarity=0.298 Sum_probs=73.8
Q ss_pred HHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCC--cEEEEeCCChhhH----HHHHHHHHHHHHHcCCeEEEE
Q 044321 290 LKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPA--QALFMDEISNSTT----FQIVNSLRQFIHILEGTILIS 363 (521)
Q Consensus 290 L~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P--~iLlLDEPTs~~~----~~i~~~L~~l~~~~~~t~ii~ 363 (521)
|-.+||+-.. -++...+|||||.||+-+|.-|-..= =+++||||+.++- ..+++.|+++. .+|.|+|++
T Consensus 465 L~~VGL~YLt----L~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LR-DlGNTviVV 539 (935)
T COG0178 465 LVDVGLGYLT----LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLR-DLGNTVIVV 539 (935)
T ss_pred HHHcCcCccc----ccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHH-hcCCeEEEE
Confidence 4457776432 12334569999999999999886542 4799999999753 34566666653 346666665
Q ss_pred EecChhHHHhhcCeEEEE------eCCEEEEecCHhHHHH
Q 044321 364 LLQPAPETYDLFDDIILI------SNGHIVYQGPREYVLE 397 (521)
Q Consensus 364 i~h~~~~~~~l~D~VivL------~~G~iv~~G~~~~v~~ 397 (521)
.|+ +++...||+|+=| +.|+||++|++++++.
T Consensus 540 -EHD-edti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 540 -EHD-EDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred -ecC-HHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 455 6788999999998 5699999999999974
No 448
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.53 E-value=1.2e-06 Score=86.46 Aligned_cols=72 Identities=18% Similarity=0.149 Sum_probs=45.1
Q ss_pred CChHHHHHHHHHHHHcC--CCcEEEEeCCChh---hH-HHHHHH---HHHHHHHcCCeEEEEEecChh------HHHhhc
Q 044321 311 ISGGQRKRVTTGEMLVG--PAQALFMDEISNS---TT-FQIVNS---LRQFIHILEGTILISLLQPAP------ETYDLF 375 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~--~P~iLlLDEPTs~---~~-~~i~~~---L~~l~~~~~~t~ii~i~h~~~------~~~~l~ 375 (521)
.|.++++.+.....++. +|+++++||||+. .+ ..+.+. ++.+.. .+.|++++.|+... .+..++
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~-~g~tvllt~~~~~~~~~~~~~~~~l~ 179 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVD-LGKTILITLHPYAFSEELLSRIRSIC 179 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcCCHHHHHHHHhhe
Confidence 56788899999988886 9999999999963 22 223333 333232 35555555443321 145667
Q ss_pred CeEEEEeC
Q 044321 376 DDIILISN 383 (521)
Q Consensus 376 D~VivL~~ 383 (521)
|-++.|+.
T Consensus 180 DgvI~L~~ 187 (234)
T PRK06067 180 DVYLKLRA 187 (234)
T ss_pred EEEEEEEe
Confidence 77777763
No 449
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.50 E-value=4.9e-06 Score=72.58 Aligned_cols=31 Identities=26% Similarity=0.222 Sum_probs=26.6
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChh
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNS 340 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~ 340 (521)
...+++..+..++.+-..+|.++|+||+...
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~viiiDei~~~ 90 (148)
T smart00382 60 SGSGELRLRLALALARKLKPDVLILDEITSL 90 (148)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 4778888888888888888999999999884
No 450
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.49 E-value=2e-07 Score=113.01 Aligned_cols=74 Identities=18% Similarity=0.142 Sum_probs=56.8
Q ss_pred cccccCccCCCCChHHHH------HHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-------CCeEEEEEec
Q 044321 300 DTMVGDEILRGISGGQRK------RVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-------EGTILISLLQ 366 (521)
Q Consensus 300 dt~vg~~~~r~LSGGqrQ------RvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-------~~t~ii~i~h 366 (521)
|+.++ +...||||||| |++||++|+.+|++|+|||||+++|......|...+... .+.+||+++|
T Consensus 1191 ~~~~~--~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitH 1268 (1311)
T TIGR00606 1191 DTALD--MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITH 1268 (1311)
T ss_pred CeecC--CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEec
Confidence 55553 33469999999 999999999999999999999998887766655444322 2456667788
Q ss_pred ChhHHHhhc
Q 044321 367 PAPETYDLF 375 (521)
Q Consensus 367 ~~~~~~~l~ 375 (521)
+...+..+|
T Consensus 1269 d~~~~~~~~ 1277 (1311)
T TIGR00606 1269 DEDFVELLG 1277 (1311)
T ss_pred CHHHHHHHh
Confidence 888887765
No 451
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.49 E-value=3.1e-07 Score=108.87 Aligned_cols=78 Identities=17% Similarity=0.128 Sum_probs=58.5
Q ss_pred ccCCCCChHHHHHHHHHHHHcC--------CCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhc
Q 044321 306 EILRGISGGQRKRVTTGEMLVG--------PAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLF 375 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~--------~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~ 375 (521)
..+.+|||||+++++||++|+. +|++||+||||+++|......+...+..+ .+.+|++++|.......+-
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~ 1024 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIP 1024 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhcc
Confidence 4567899999999999999995 89999999999998887666666555433 3555666667555555566
Q ss_pred CeEEEEeC
Q 044321 376 DDIILISN 383 (521)
Q Consensus 376 D~VivL~~ 383 (521)
.+|.|-..
T Consensus 1025 ~qi~V~k~ 1032 (1047)
T PRK10246 1025 VQIKVKKI 1032 (1047)
T ss_pred ceEEEEEC
Confidence 66776654
No 452
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.49 E-value=6.2e-07 Score=97.12 Aligned_cols=69 Identities=22% Similarity=0.277 Sum_probs=52.2
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC--CceeeecCCccccCCCCHHHHHHHHHHhccC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL--KNRCDISQHDVHIGEMTVRETLAFSARCQGV 243 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~--~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~ 243 (521)
.++++.+..+..|.+++|+||||+||||++..|++.+.... ...+.+..+. ...++.|+|.+.+...++
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt---~RigA~EQLr~~AeilGV 314 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDS---YRIGGHEQLRIYGKILGV 314 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCc---cchhHHHHHHHHHHHhCC
Confidence 35667777888999999999999999999999999764322 1235666653 457899999887765543
No 453
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.48 E-value=2.2e-07 Score=89.66 Aligned_cols=57 Identities=11% Similarity=0.151 Sum_probs=36.8
Q ss_pred HHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 320 TTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 320 aIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
+|+++|..+|+++++|||.. .+.+..+.+.+. .+..++.++ |... +...+||++.|.
T Consensus 66 ~i~~aLr~~pd~ii~gEird---~e~~~~~l~~a~-~G~~v~~t~-Ha~~-~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMRD---LETIRLALTAAE-TGHLVMSTL-HTNS-AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCCC---HHHHHHHHHHHH-cCCEEEEEe-cCCc-HHHHHhHHHhhc
Confidence 47899999999999999974 333444444443 355554444 5433 446678876664
No 454
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.44 E-value=3.7e-06 Score=79.54 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=38.4
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHH----HHHHHHHHHHHHcCCeEEEEEecC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTF----QIVNSLRQFIHILEGTILISLLQP 367 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~----~i~~~L~~l~~~~~~t~ii~i~h~ 367 (521)
....|.||-=---+.+.+.+. -++|||||-+++.+ ++...|+++++ .|.-+||.+|.|
T Consensus 127 Lh~~SHGEsf~~i~~~rf~~~-GiYiLDEPEa~LSp~RQlella~l~~la~-sGaQ~IiATHSP 188 (233)
T COG3910 127 LHHMSHGESFLAIFHNRFNGQ-GIYILDEPEAALSPSRQLELLAILRDLAD-SGAQIIIATHSP 188 (233)
T ss_pred hhhhccchHHHHHHHHHhccC-ceEEecCccccCCHHHHHHHHHHHHHHHh-cCCeEEEEecCh
Confidence 445799998766666776655 89999999996544 45666666654 244444444433
No 455
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.43 E-value=3.6e-07 Score=109.14 Aligned_cols=76 Identities=18% Similarity=0.290 Sum_probs=58.3
Q ss_pred ccCCCCChHHHHHHHHHHHH----cCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEE
Q 044321 306 EILRGISGGQRKRVTTGEML----VGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraL----v~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
..+..||||||+|++||+++ +.+|+++||||||+++|......+..++... ..+.+|+++|+.. ...+||+++.
T Consensus 1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~-~~~~~d~~~~ 1163 (1179)
T TIGR02168 1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKG-TMEVADQLYG 1163 (1179)
T ss_pred ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChh-HHHHhhhHee
Confidence 34567999999999999998 4788999999999999987777776666543 2344555666655 4578999987
Q ss_pred Ee
Q 044321 381 IS 382 (521)
Q Consensus 381 L~ 382 (521)
+.
T Consensus 1164 ~~ 1165 (1179)
T TIGR02168 1164 VT 1165 (1179)
T ss_pred ee
Confidence 64
No 456
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.39 E-value=5.7e-07 Score=107.59 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=60.4
Q ss_pred cCCCCChHHHHHHHHHHHHc----CCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 307 ILRGISGGQRKRVTTGEMLV----GPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv----~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
.+..||||||++++||.+|+ .+|+++|||||++++|......+..++... ..+.+|++||+. .++.+||+++.+
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~-~~~~~~d~~~~~ 1149 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRS-PMIEYADRAIGV 1149 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcH-HHHHhcceeEeE
Confidence 35679999999999999998 488999999999999998877777777654 234455555554 467899999887
Q ss_pred eC
Q 044321 382 SN 383 (521)
Q Consensus 382 ~~ 383 (521)
..
T Consensus 1150 ~~ 1151 (1164)
T TIGR02169 1150 TM 1151 (1164)
T ss_pred EE
Confidence 63
No 457
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.38 E-value=2.8e-07 Score=88.49 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+++|.||||||||||.++|++.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 458
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.37 E-value=2.7e-06 Score=84.25 Aligned_cols=22 Identities=45% Similarity=0.735 Sum_probs=19.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHh
Q 044321 184 GRMTLLLGPPGSVKTTLLLALA 205 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~La 205 (521)
|.+.+|+||+|+|||||+-.++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la 22 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLA 22 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHH
Confidence 6789999999999999998776
No 459
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.28 E-value=1.5e-06 Score=100.85 Aligned_cols=69 Identities=17% Similarity=0.148 Sum_probs=42.0
Q ss_pred CCCCChHHHHHHHHHHHHcC--CCcEEEEeCC---ChhhHHH-HHHHHHHHHHHcCCeEEEEEecChhHHHhhcCe
Q 044321 308 LRGISGGQRKRVTTGEMLVG--PAQALFMDEI---SNSTTFQ-IVNSLRQFIHILEGTILISLLQPAPETYDLFDD 377 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~--~P~iLlLDEP---Ts~~~~~-i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~ 377 (521)
..|+|-=+.-...++.+|-. +++++|+||| |+..+-. +...+.+.+....+..++++||. .++.+++++
T Consensus 664 ~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~-~el~~l~~~ 738 (854)
T PRK05399 664 ASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHY-HELTELEEK 738 (854)
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEech-HHHHHHhhh
Confidence 34678877777788877755 8999999999 6643321 22223222233333445556666 566667664
No 460
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.28 E-value=1.1e-05 Score=86.95 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=38.3
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
....+++++ +.|.+|+.++|+|+||+|||||+++|+|...++
T Consensus 149 TGi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~ 190 (440)
T TIGR01026 149 TGVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEAD 190 (440)
T ss_pred ceeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 446799999 999999999999999999999999999987664
No 461
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.20 E-value=1.5e-06 Score=92.90 Aligned_cols=70 Identities=13% Similarity=0.084 Sum_probs=53.7
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------------ceeeecC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------------NRCDISQ 220 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------------~~~~v~q 220 (521)
....+|+++ +.|.+|++++|+|+||+|||||+++|+|...++.. ..+++++
T Consensus 141 TGi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~ 219 (434)
T PRK07196 141 VGVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPA 219 (434)
T ss_pred cceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecC
Confidence 345799999 99999999999999999999999999998766521 1145566
Q ss_pred CccccCCCCHHHHHHHHHH
Q 044321 221 HDVHIGEMTVRETLAFSAR 239 (521)
Q Consensus 221 ~d~~~~~lTV~E~l~f~~~ 239 (521)
+...+..+++.+++.+.+.
T Consensus 220 d~s~~~rl~a~e~a~~iAE 238 (434)
T PRK07196 220 DESPLMRIKATELCHAIAT 238 (434)
T ss_pred CCChhhhHHHHHHHHHHHH
Confidence 6666666777777665543
No 462
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.20 E-value=1.3e-06 Score=83.28 Aligned_cols=37 Identities=30% Similarity=0.242 Sum_probs=32.1
Q ss_pred eeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 175 KDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 175 ~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
+=+.+.+++|+.++|+||||||||||+++|+|++++.
T Consensus 16 ~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~ 52 (186)
T cd01130 16 AYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD 52 (186)
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 3345668899999999999999999999999998765
No 463
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.19 E-value=1.7e-06 Score=67.68 Aligned_cols=36 Identities=39% Similarity=0.478 Sum_probs=28.7
Q ss_pred eeeeEEEEeC-CcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 174 LKDVSGIIRP-GRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 174 L~dVS~~I~~-Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
+++.++.+.+ |.+++|.|||||||||||.+|.=.+-
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 3445677775 56999999999999999999876543
No 464
>PRK02224 chromosome segregation protein; Provisional
Probab=98.18 E-value=3.2e-06 Score=98.84 Aligned_cols=75 Identities=17% Similarity=0.231 Sum_probs=55.6
Q ss_pred CCCCChHHHH------HHHHHHHHcCC------CcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHH
Q 044321 308 LRGISGGQRK------RVTTGEMLVGP------AQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETY 372 (521)
Q Consensus 308 ~r~LSGGqrQ------RvaIAraLv~~------P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~ 372 (521)
+..||||||+ |+++|++++.+ ++++||||||+++|..-...+..++... +.+.||+++|+...+
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~- 857 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELV- 857 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHH-
Confidence 4579999999 89999988853 3679999999998877666655544432 344566667776444
Q ss_pred hhcCeEEEEeC
Q 044321 373 DLFDDIILISN 383 (521)
Q Consensus 373 ~l~D~VivL~~ 383 (521)
..||+++.|..
T Consensus 858 ~~ad~~~~~~~ 868 (880)
T PRK02224 858 GAADDLVRVEK 868 (880)
T ss_pred HhcCeeEEeec
Confidence 68999999964
No 465
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.15 E-value=1.5e-06 Score=95.08 Aligned_cols=168 Identities=15% Similarity=0.165 Sum_probs=86.4
Q ss_pred eeeee-EEEEeCCcEEEEEcCCCChHHHHHHHH--hCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHH
Q 044321 173 ILKDV-SGIIRPGRMTLLLGPPGSVKTTLLLAL--AGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEM 249 (521)
Q Consensus 173 iL~dV-S~~I~~Ge~~~LlGpnGSGKSTLLk~L--aG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~ 249 (521)
-|+.+ .+=+++|.+++|.||||||||||.... .|..... ....||.-+ -+..+-+..+..+......
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~g-e~~lyvs~e------E~~~~l~~~~~~~G~~~~~--- 78 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFD-EPGVFVTFE------ESPQDIIKNARSFGWDLQK--- 78 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC-CCEEEEEEe------cCHHHHHHHHHHcCCCHHH---
Confidence 45554 567899999999999999999999865 4433211 223455432 2344433333222111000
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHH--HHHcC
Q 044321 250 LAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTG--EMLVG 327 (521)
Q Consensus 250 ~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIA--raLv~ 327 (521)
.....+...+...+. .....+++.+++.+..+.... .+|+|++|||.|+ .+|..
T Consensus 79 ---~~~~g~l~~~~~~~~----------------~~~~~~~~~~~l~~~l~~i~~-----~ls~g~~qRVvIDSl~aL~~ 134 (484)
T TIGR02655 79 ---LVDEGKLFILDASPD----------------PEGQDVVGGFDLSALIERINY-----AIRKYKAKRVSIDSVTAVFQ 134 (484)
T ss_pred ---HhhcCceEEEecCch----------------hccccccccCCHHHHHHHHHH-----HHHHhCCcEEEEeehhHhhh
Confidence 000000000000000 000112334455444444433 4999999999999 56655
Q ss_pred CCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhH--------H-HhhcCeEEEEe
Q 044321 328 PAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPE--------T-YDLFDDIILIS 382 (521)
Q Consensus 328 ~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~--------~-~~l~D~VivL~ 382 (521)
.|+.+ ......+.+.++.+ +..+.|++++.|+ ... + ..+||.|++|+
T Consensus 135 ~~~~~------~~~r~~l~~Li~~L-~~~g~TvLLtsh~-~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 135 QYDAV------SVVRREIFRLVARL-KQIGVTTVMTTER-IEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred hcCch------HHHHHHHHHHHHHH-HHCCCEEEEEecC-cccccccccCCceeEeeeeEEEEE
Confidence 54433 22334455555554 3345666666544 322 2 55889999987
No 466
>PRK13764 ATPase; Provisional
Probab=98.15 E-value=1.2e-05 Score=89.20 Aligned_cols=64 Identities=20% Similarity=0.401 Sum_probs=46.0
Q ss_pred HHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEec---------------ChhHHHhhcCeEEEEeCCEE--
Q 044321 324 MLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQ---------------PAPETYDLFDDIILISNGHI-- 386 (521)
Q Consensus 324 aLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h---------------~~~~~~~l~D~VivL~~G~i-- 386 (521)
+|..+|+++++||.-..-+.++...+.. .++.++.+.| +...+...+|.|+.+.+|+|
T Consensus 320 lLR~rPD~IivGEiRd~Et~~~~~~l~~-----ag~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID~IV~I~~G~I~~ 394 (602)
T PRK13764 320 LLLVRPDYTIYDEMRKTEDFKIFADMRL-----AGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIFIEDGEVSK 394 (602)
T ss_pred HHhhCCCEEEECCCCCHHHHHHHHHHHH-----cCCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhcEEEEEeCCEEEE
Confidence 3778999999999887666555444432 2344555556 55566778999999999999
Q ss_pred EEecCH
Q 044321 387 VYQGPR 392 (521)
Q Consensus 387 v~~G~~ 392 (521)
+|.+..
T Consensus 395 v~~~~~ 400 (602)
T PRK13764 395 VYDLEF 400 (602)
T ss_pred EEeeee
Confidence 777763
No 467
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.12 E-value=3.3e-05 Score=81.87 Aligned_cols=88 Identities=20% Similarity=0.289 Sum_probs=63.7
Q ss_pred CCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHH-------------------HHHHHHHHHHH
Q 044321 295 LDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQ-------------------IVNSLRQFIHI 355 (521)
Q Consensus 295 L~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~-------------------i~~~L~~l~~~ 355 (521)
|+...||.-- ....=||-.-|=..|.+||=..+++||+||=|+++.+- +++.++.+.++
T Consensus 309 LP~g~dT~~F--sT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~ 386 (448)
T PF09818_consen 309 LPGGKDTTCF--STENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEK 386 (448)
T ss_pred CCCCCCCCcc--cccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHH
Confidence 5655665421 22358999999999999999999999999988753332 23445556555
Q ss_pred cCCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 356 LEGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 356 ~~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
.+.++|+++ --+...++.+|+|++|++=+
T Consensus 387 ~GvStIlV~-Ggsgdy~~vAD~Vi~Md~Y~ 415 (448)
T PF09818_consen 387 LGVSTILVV-GGSGDYFDVADRVIMMDEYR 415 (448)
T ss_pred cCceEEEEe-ccchhhHhhCCEEEEecCcc
Confidence 666666665 55667889999999998754
No 468
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.11 E-value=5.2e-06 Score=87.63 Aligned_cols=78 Identities=24% Similarity=0.267 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHhhhhhcCCC--CCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccccc
Q 044321 88 QRLVEKLVKVAEVYNEEFLLKLKNRIARVGIS--LPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNILP 165 (521)
Q Consensus 88 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~ 165 (521)
....+|++++++.++.. +.+ ...-.+.|+||++.+..
T Consensus 104 ~~~~ER~~~Ll~v~~vn------------~~~~e~~~~ri~Fe~LTf~YP~----------------------------- 142 (415)
T TIGR00767 104 PKEGERYFALLKVESVN------------GDDPEKAKNRVLFENLTPLYPN----------------------------- 142 (415)
T ss_pred cccHhHHHHHhCCCccC------------CCCccccCCCeEEEEeeecCCC-----------------------------
Confidence 34567888888776641 222 12346999999998731
Q ss_pred CCCCcceeee-----------eeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 166 SRKKHLTILK-----------DVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 166 ~~~~~~~iL~-----------dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
.+.+|+ |+++.|.+|+.++|+||+|||||||++.|+..+..
T Consensus 143 ----er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 143 ----ERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred ----ccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 112343 89999999999999999999999999999987654
No 469
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.09 E-value=9.1e-06 Score=85.07 Aligned_cols=30 Identities=33% Similarity=0.545 Sum_probs=26.3
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
..++.+++|.||+||||||+|++|.+.+.+
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~ 148 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINK 148 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 467889999999999999999999986653
No 470
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.04 E-value=3.3e-06 Score=81.80 Aligned_cols=42 Identities=26% Similarity=0.160 Sum_probs=33.8
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCcccc
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHI 225 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~ 225 (521)
++|++++|+||||||||||+++|++++.+ ....++++++.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~~~ 45 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQDNYYK 45 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEeccccccc
Confidence 57999999999999999999999998764 2345677766543
No 471
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.04 E-value=4.5e-06 Score=81.85 Aligned_cols=33 Identities=33% Similarity=0.433 Sum_probs=27.0
Q ss_pred eeeee-EEEEeCCcEEEEEcCCCChHHHHHHHHh
Q 044321 173 ILKDV-SGIIRPGRMTLLLGPPGSVKTTLLLALA 205 (521)
Q Consensus 173 iL~dV-S~~I~~Ge~~~LlGpnGSGKSTLLk~La 205 (521)
-|+.+ .+=+++|++++|.||||||||||...++
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 34453 4568999999999999999999988654
No 472
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.95 E-value=0.00016 Score=72.59 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=34.4
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
....|+++.+-+.+|++++|.|++|+|||||+..++...
T Consensus 16 g~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 16 PFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred CcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999999999999998876643
No 473
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=97.91 E-value=0.00033 Score=81.73 Aligned_cols=67 Identities=13% Similarity=0.209 Sum_probs=41.3
Q ss_pred HHHHHcCCCcEEEEeCCChhh-HHHHHHHHHHHH---HHcCCeEEEEEecChhHHHh--hcCeEEEEeCCEEEE
Q 044321 321 TGEMLVGPAQALFMDEISNST-TFQIVNSLRQFI---HILEGTILISLLQPAPETYD--LFDDIILISNGHIVY 388 (521)
Q Consensus 321 IAraLv~~P~iLlLDEPTs~~-~~~i~~~L~~l~---~~~~~t~ii~i~h~~~~~~~--l~D~VivL~~G~iv~ 388 (521)
|++++.++|+++++|||+..+ +....+.+.+++ ++.++ ++++++|....+.. .++.|+-....+|+.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~-~vil~TQs~~d~~~s~i~~~ilen~~t~I~L 752 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANC-LVLMATQSLSDAANSGILDVIVESTATKIFL 752 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCC-EEEEEeCCHHHHhhCchHHHHHHcCCcceec
Confidence 677889999999999999976 344444443333 22344 55556677666654 344444444455543
No 474
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.90 E-value=4.7e-05 Score=82.58 Aligned_cols=43 Identities=37% Similarity=0.476 Sum_probs=32.5
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCC
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQH 221 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~ 221 (521)
+=+.+|++++|.|+||+|||||+..++...........|+..+
T Consensus 89 GGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~E 131 (454)
T TIGR00416 89 GGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGE 131 (454)
T ss_pred CCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECc
Confidence 4688999999999999999999998887554332233566543
No 475
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.88 E-value=0.00017 Score=63.42 Aligned_cols=27 Identities=52% Similarity=0.707 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
.+..+.|.||+|+|||||++.++..+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 567899999999999999999998653
No 476
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.87 E-value=2.9e-05 Score=81.91 Aligned_cols=58 Identities=16% Similarity=0.167 Sum_probs=48.5
Q ss_pred CCChHHHHHHHHHHHHcC---------CCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecCh
Q 044321 310 GISGGQRKRVTTGEMLVG---------PAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPA 368 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~---------~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~ 368 (521)
-+|.||+|++.||.+|+. .|+|||||||++++|..-.+.|.+.+...+..++++ +|+.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~~~qv~it-~~~~ 341 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSLGVQVFVT-AISL 341 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhcCCEEEEE-ecCh
Confidence 489999999999999999 999999999999999999998888876443455554 4444
No 477
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.85 E-value=1e-05 Score=76.69 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
+|++++|+|+||||||||+++|+|++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 6999999999999999999999998765
No 478
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.85 E-value=1.2e-05 Score=76.59 Aligned_cols=27 Identities=41% Similarity=0.695 Sum_probs=25.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
|++++|+||||||||||+++|++.+.+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~ 28 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT 28 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 789999999999999999999998754
No 479
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.83 E-value=5.6e-05 Score=75.61 Aligned_cols=40 Identities=25% Similarity=0.275 Sum_probs=33.3
Q ss_pred ceeeeeeEEEEeCCc-EEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 171 LTILKDVSGIIRPGR-MTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge-~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
..+++.++..+++|. +++|.||||+|||||++.++..+.+
T Consensus 29 ~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~ 69 (269)
T TIGR03015 29 KRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQ 69 (269)
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCC
Confidence 457777777777655 8999999999999999999987654
No 480
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=97.82 E-value=3.2e-05 Score=80.16 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=39.2
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL 212 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~ 212 (521)
....+++++ +.+.+|+.++|+|+||+|||||+++|+|...++.
T Consensus 55 tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~ 97 (326)
T cd01136 55 TGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADV 97 (326)
T ss_pred CCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCE
Confidence 446799999 9999999999999999999999999999887753
No 481
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=97.81 E-value=0.00014 Score=72.17 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=28.4
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
..+-+|+.+.-....++.|.|||.+||||+||.++=
T Consensus 30 ~~v~ndi~~~~~~~~~~iiTGpN~sGKSt~lk~i~~ 65 (235)
T PF00488_consen 30 KFVPNDIELSNNKSRIIIITGPNMSGKSTFLKQIGL 65 (235)
T ss_dssp SC--EEEEESSSSSSEEEEESSTTSSHHHHHHHHHH
T ss_pred ceecceeecCCCceeEEEEeCCCccchhhHHHHHHH
Confidence 356777777666667999999999999999998864
No 482
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.79 E-value=6.4e-05 Score=90.49 Aligned_cols=35 Identities=29% Similarity=0.232 Sum_probs=30.0
Q ss_pred eEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 177 VSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 177 VS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
+++....+++++|+|++|+|||||++++++.+...
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~ 234 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ 234 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc
Confidence 45677889999999999999999999998866543
No 483
>PRK09183 transposase/IS protein; Provisional
Probab=97.77 E-value=2.6e-05 Score=78.54 Aligned_cols=34 Identities=38% Similarity=0.467 Sum_probs=30.3
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.|.+++| ++.|+.++|+||||+|||+|+.+|+..
T Consensus 92 ~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 92 SLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred HHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 4667788 999999999999999999999999664
No 484
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.77 E-value=3.8e-05 Score=73.21 Aligned_cols=70 Identities=16% Similarity=0.154 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhH--HHhhcCeEEEEeCC
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPE--TYDLFDDIILISNG 384 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~--~~~l~D~VivL~~G 384 (521)
-|+-.|..||.++..+|+.+..+| +.+.+.+.+.+.+.+.+. .+.++++..|...+ ...+||.+++++-+
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 378899999999999999888777 567777777666665443 22344444444422 56789999887643
No 485
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.74 E-value=0.00037 Score=73.73 Aligned_cols=42 Identities=36% Similarity=0.466 Sum_probs=31.7
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecC
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQ 220 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q 220 (521)
+=+.+|+++.|.|+||+|||||+..++..+........|+..
T Consensus 77 GGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~ 118 (372)
T cd01121 77 GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSG 118 (372)
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 457899999999999999999999988755433223345544
No 486
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=97.73 E-value=3.2e-05 Score=83.09 Aligned_cols=42 Identities=19% Similarity=0.179 Sum_probs=37.8
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
....+++.++ .|.+|+.++|+|||||||||||++|+++..++
T Consensus 151 TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd 192 (450)
T PRK06002 151 TGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFD 192 (450)
T ss_pred CCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4467899896 99999999999999999999999999988765
No 487
>PRK08149 ATP synthase SpaL; Validated
Probab=97.73 E-value=3.9e-05 Score=82.13 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=38.2
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
....+++++ +.|.+|+.++|+|+||+|||||+++|++...++
T Consensus 137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~d 178 (428)
T PRK08149 137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEAD 178 (428)
T ss_pred CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCC
Confidence 345799999 999999999999999999999999999987664
No 488
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.72 E-value=2.2e-05 Score=75.51 Aligned_cols=28 Identities=39% Similarity=0.553 Sum_probs=26.2
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
++|++++|+||||||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999764
No 489
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=0.00017 Score=76.11 Aligned_cols=38 Identities=32% Similarity=0.487 Sum_probs=34.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
..++++++..+..|++++|+||||+||||++..|++.+
T Consensus 124 l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 124 LPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred chhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45788888999999999999999999999999999864
No 490
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.70 E-value=9.7e-05 Score=86.88 Aligned_cols=76 Identities=22% Similarity=0.299 Sum_probs=57.7
Q ss_pred cCCCCChHHHHHHHHHHHHc------CC--CcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcC
Q 044321 307 ILRGISGGQRKRVTTGEMLV------GP--AQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFD 376 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv------~~--P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D 376 (521)
++..|||||+=.++||-+|+ .+ -++|||||||..+|.+..+.+...+... ++-.|+++||+ ++..+.||
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~-eel~e~~~ 890 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHV-EELKERAD 890 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCh-HHHHHhCC
Confidence 67789999998877775544 56 6999999999999998877777766543 23444455555 57778999
Q ss_pred eEEEEeC
Q 044321 377 DIILISN 383 (521)
Q Consensus 377 ~VivL~~ 383 (521)
.++.+..
T Consensus 891 ~~i~V~k 897 (908)
T COG0419 891 VRIRVKK 897 (908)
T ss_pred eEEEEEe
Confidence 9999874
No 491
>PLN02796 D-glycerate 3-kinase
Probab=97.67 E-value=1.3e-05 Score=83.31 Aligned_cols=54 Identities=20% Similarity=0.226 Sum_probs=39.6
Q ss_pred eeeeeeEEEE---eCCcE-----EEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCcccc
Q 044321 172 TILKDVSGII---RPGRM-----TLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHI 225 (521)
Q Consensus 172 ~iL~dVS~~I---~~Ge~-----~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~ 225 (521)
.++++++..+ ++|+. ++|+|++|||||||+++|.+.+.+.....+.++.++.++
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYL 141 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYL 141 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCccc
Confidence 3566666666 56665 999999999999999999999876432345566655543
No 492
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.65 E-value=6.6e-05 Score=91.38 Aligned_cols=57 Identities=14% Similarity=0.169 Sum_probs=47.7
Q ss_pred CCCCChHHHHHHH----HHHH--------HcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEE
Q 044321 308 LRGISGGQRKRVT----TGEM--------LVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISL 364 (521)
Q Consensus 308 ~r~LSGGqrQRva----IAra--------Lv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i 364 (521)
..+|||||||+++ +|++ +..+|++++||||++++|......+.+++..++.++||++
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l~~~~i~~s 1313 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRALDLDFVMTS 1313 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHhCCCEEEEc
Confidence 4679999999996 5644 5589999999999999999999999999888766665543
No 493
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=97.65 E-value=4.2e-05 Score=72.27 Aligned_cols=35 Identities=37% Similarity=0.562 Sum_probs=28.3
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++++++.+.|| +++|.||||+||||++.+|.-.+
T Consensus 9 ~~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L 43 (202)
T PF13476_consen 9 SFKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYAL 43 (202)
T ss_dssp TEEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 347788888887 99999999999999999987644
No 494
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=97.63 E-value=0.00049 Score=72.04 Aligned_cols=91 Identities=19% Similarity=0.099 Sum_probs=58.8
Q ss_pred CCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHH----------HHH---HHHHHHHc-C-Ce
Q 044321 295 LDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQI----------VNS---LRQFIHIL-E-GT 359 (521)
Q Consensus 295 L~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i----------~~~---L~~l~~~~-~-~t 359 (521)
|+...||.-.. ...=||-+.+=-.|=+++=...++||+||=++++..-+ .+. |...+..+ + ..
T Consensus 307 LPggkdTp~fv--tgdASGStsmAa~IQeaiEagak~lliDED~sAtNllvrdVlake~eG~rtl~pl~dei~s~~gd~i 384 (554)
T COG3044 307 LPGGKDTPDFV--TGDASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRDVLAKESEGERTLTPLVDEIGSLRGDLI 384 (554)
T ss_pred CCCCCCCcccc--cCCCCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhhHHHHHhcCcccchHHHHhhhhhccCce
Confidence 44555554211 12379999999999999999999999999777322211 111 11222222 2 24
Q ss_pred EEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 360 ILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 360 ~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
.+|+++--.....+.+|++|+|++-+-.
T Consensus 385 S~iaVtgglddlla~aDRaIvMeDhrpk 412 (554)
T COG3044 385 STIAVTGGLDDLLAVADRAIVMEDHRPK 412 (554)
T ss_pred EEEEEeccchhhhhhcceEEEecccCcc
Confidence 4455556666778899999999987754
No 495
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=97.61 E-value=7.1e-05 Score=80.51 Aligned_cols=42 Identities=14% Similarity=0.138 Sum_probs=38.4
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
....+++++ +.|.+|+.++|+|+||+|||||+++|+|...++
T Consensus 154 TGi~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~d 195 (451)
T PRK05688 154 VGIRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEAD 195 (451)
T ss_pred cceeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 456799999 999999999999999999999999999987664
No 496
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.61 E-value=4.5e-05 Score=71.73 Aligned_cols=26 Identities=35% Similarity=0.486 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
|++++|+||||||||||++.|++..+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 78999999999999999999999754
No 497
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.60 E-value=3.1e-05 Score=76.09 Aligned_cols=41 Identities=17% Similarity=0.037 Sum_probs=30.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCCC--CCCceeeecCCccccC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKLDS--SLKNRCDISQHDVHIG 226 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l~~--~~~~~~~v~q~d~~~~ 226 (521)
+++|.||||||||||++.|++.+.+ .......+++++.+.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~ 43 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYP 43 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCc
Confidence 5899999999999999999998854 2222345666665443
No 498
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.59 E-value=5.1e-05 Score=74.75 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=26.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCCCCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKLDSSL 212 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~ 212 (521)
+..+++|.||||||||||++.|++.+.+..
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 456999999999999999999999987653
No 499
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.58 E-value=4.4e-05 Score=71.89 Aligned_cols=27 Identities=37% Similarity=0.607 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
|++++|+||||||||||++.|++.+..
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 678999999999999999999997643
No 500
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.57 E-value=8e-05 Score=80.00 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=39.0
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL 212 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~ 212 (521)
....+++++ +.+.+|+.++|+|+||+|||||+++|+|...++.
T Consensus 131 tG~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~ 173 (422)
T TIGR02546 131 TGVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADV 173 (422)
T ss_pred CCceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCE
Confidence 346799999 9999999999999999999999999999887653
Done!