Query 044321
Match_columns 521
No_of_seqs 706 out of 3660
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 23:46:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044321.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044321hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 1.9E-41 6.4E-46 352.1 25.7 203 170-419 40-267 (366)
2 3fvq_A Fe(3+) IONS import ATP- 100.0 1.9E-41 6.4E-46 351.7 24.1 199 170-416 16-239 (359)
3 3rlf_A Maltose/maltodextrin im 100.0 1.9E-41 6.6E-46 354.0 23.3 188 170-396 15-222 (381)
4 3gfo_A Cobalt import ATP-bindi 100.0 2.4E-40 8.1E-45 332.8 24.3 188 171-397 21-233 (275)
5 2yyz_A Sugar ABC transporter, 100.0 2.2E-40 7.6E-45 344.2 23.2 188 170-396 15-222 (359)
6 2it1_A 362AA long hypothetical 100.0 3E-40 1E-44 343.6 23.6 188 170-396 15-222 (362)
7 4g1u_C Hemin import ATP-bindin 100.0 9.9E-40 3.4E-44 326.9 26.4 186 170-396 23-236 (266)
8 2olj_A Amino acid ABC transpor 100.0 2E-39 6.8E-44 324.1 26.8 187 171-396 37-247 (263)
9 1z47_A CYSA, putative ABC-tran 100.0 3.2E-40 1.1E-44 342.4 21.3 188 170-396 27-234 (355)
10 3d31_A Sulfate/molybdate ABC t 100.0 1.1E-39 3.7E-44 338.0 24.8 197 170-417 13-229 (348)
11 3tif_A Uncharacterized ABC tra 100.0 1.1E-39 3.6E-44 320.9 23.3 188 171-395 18-232 (235)
12 1g29_1 MALK, maltose transport 100.0 1.2E-39 4E-44 340.6 25.0 187 171-396 16-228 (372)
13 1vpl_A ABC transporter, ATP-bi 100.0 2.2E-39 7.6E-44 322.6 25.7 188 171-397 28-235 (256)
14 1v43_A Sugar-binding transport 100.0 4.5E-40 1.5E-44 343.5 21.0 187 171-396 24-230 (372)
15 1b0u_A Histidine permease; ABC 100.0 3.2E-39 1.1E-43 322.5 26.2 187 171-396 19-241 (262)
16 2pcj_A ABC transporter, lipopr 100.0 2.3E-39 7.8E-44 316.3 24.5 182 171-392 17-223 (224)
17 1oxx_K GLCV, glucose, ABC tran 100.0 8.5E-40 2.9E-44 339.6 21.6 185 173-396 20-229 (353)
18 1g6h_A High-affinity branched- 100.0 2.1E-39 7.2E-44 322.9 22.7 198 171-394 20-239 (257)
19 3nh6_A ATP-binding cassette SU 100.0 1.4E-39 4.7E-44 331.7 21.2 239 85-397 19-277 (306)
20 1ji0_A ABC transporter; ATP bi 100.0 6.3E-39 2.2E-43 316.3 23.6 186 171-396 19-227 (240)
21 2nq2_C Hypothetical ABC transp 100.0 9E-38 3.1E-42 310.5 26.6 188 171-395 18-215 (253)
22 2onk_A Molybdate/tungstate ABC 100.0 2.1E-38 7.1E-43 312.7 20.7 182 173-396 14-215 (240)
23 2yz2_A Putative ABC transporte 100.0 9.4E-38 3.2E-42 312.5 23.6 187 171-397 20-227 (266)
24 2d2e_A SUFC protein; ABC-ATPas 100.0 1.9E-37 6.5E-42 307.5 22.2 187 171-394 16-230 (250)
25 2ff7_A Alpha-hemolysin translo 100.0 3.1E-37 1E-41 305.6 22.0 183 171-396 22-231 (247)
26 2ihy_A ABC transporter, ATP-bi 100.0 2.4E-37 8.2E-42 311.6 20.2 189 171-395 34-250 (279)
27 2zu0_C Probable ATP-dependent 100.0 1.2E-36 4E-41 304.8 24.2 203 171-405 33-261 (267)
28 2ixe_A Antigen peptide transpo 100.0 6.2E-37 2.1E-41 307.4 22.1 189 171-396 32-244 (271)
29 2pjz_A Hypothetical protein ST 100.0 3.1E-36 1.1E-40 301.0 24.8 178 171-396 18-214 (263)
30 4a82_A Cystic fibrosis transme 100.0 1.4E-36 4.9E-41 334.9 23.0 241 84-397 304-564 (578)
31 2qi9_C Vitamin B12 import ATP- 100.0 9.9E-37 3.4E-41 302.3 19.5 179 172-395 14-220 (249)
32 3qf4_A ABC transporter, ATP-bi 100.0 2.8E-36 9.5E-41 333.1 23.8 241 84-397 306-566 (587)
33 2pze_A Cystic fibrosis transme 100.0 3.9E-36 1.3E-40 294.4 21.6 189 171-396 21-217 (229)
34 3gd7_A Fusion complex of cysti 100.0 6.2E-37 2.1E-41 321.6 16.6 195 170-416 33-253 (390)
35 1mv5_A LMRA, multidrug resista 100.0 5.6E-37 1.9E-41 302.8 15.3 183 170-396 14-225 (243)
36 2ghi_A Transport protein; mult 100.0 4.9E-36 1.7E-40 299.1 21.4 184 171-397 33-242 (260)
37 2cbz_A Multidrug resistance-as 100.0 3.1E-36 1.1E-40 296.5 19.0 188 171-396 18-216 (237)
38 3b5x_A Lipid A export ATP-bind 100.0 3E-35 1E-39 324.5 25.6 231 84-397 308-567 (582)
39 2yl4_A ATP-binding cassette SU 100.0 1.8E-35 6.1E-40 327.1 23.3 234 84-396 305-569 (595)
40 3qf4_B Uncharacterized ABC tra 100.0 1.2E-35 4.1E-40 328.7 20.2 237 84-397 320-578 (598)
41 3b60_A Lipid A export ATP-bind 100.0 1E-34 3.5E-39 320.3 26.5 231 84-397 308-567 (582)
42 4f4c_A Multidrug resistance pr 100.0 2.7E-35 9.3E-40 351.0 20.3 243 84-397 1041-1304(1321)
43 4f4c_A Multidrug resistance pr 100.0 7.3E-35 2.5E-39 347.3 22.5 238 84-397 379-641 (1321)
44 1sgw_A Putative ABC transporte 100.0 1.6E-35 5.6E-40 287.2 13.7 172 172-386 23-210 (214)
45 2bbs_A Cystic fibrosis transme 100.0 1E-33 3.4E-38 286.6 18.8 187 172-396 52-246 (290)
46 3g5u_A MCG1178, multidrug resi 100.0 2.1E-33 7.1E-38 334.0 22.8 241 84-397 351-613 (1284)
47 3g5u_A MCG1178, multidrug resi 100.0 1.5E-32 5.2E-37 326.6 18.3 243 84-397 994-1258(1284)
48 3bk7_A ABC transporter ATP-bin 100.0 6E-31 2.1E-35 290.8 22.7 183 172-397 370-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 5.8E-31 2E-35 287.6 21.1 183 172-397 300-493 (538)
50 3j16_B RLI1P; ribosome recycli 100.0 4E-31 1.4E-35 292.0 18.1 183 171-397 360-559 (608)
51 2iw3_A Elongation factor 3A; a 100.0 6.9E-30 2.4E-34 292.6 25.6 181 170-397 447-635 (986)
52 3ozx_A RNAse L inhibitor; ATP 100.0 3E-30 1E-34 281.7 19.3 183 172-396 282-476 (538)
53 1yqt_A RNAse L inhibitor; ATP- 100.0 3E-29 1E-33 274.1 18.0 191 172-384 36-234 (538)
54 3ux8_A Excinuclease ABC, A sub 100.0 2.1E-29 7.1E-34 282.3 15.5 195 170-396 30-297 (670)
55 3bk7_A ABC transporter ATP-bin 100.0 6.6E-29 2.3E-33 274.5 18.7 191 172-384 106-304 (607)
56 2iw3_A Elongation factor 3A; a 100.0 9.2E-29 3.1E-33 283.3 15.2 213 171-391 686-981 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 5.2E-28 1.8E-32 270.9 19.0 105 286-396 523-639 (670)
58 3j16_B RLI1P; ribosome recycli 99.9 2.8E-27 9.5E-32 261.3 16.4 201 169-388 89-301 (608)
59 3ozx_A RNAse L inhibitor; ATP 99.9 3.8E-27 1.3E-31 257.2 14.7 98 284-386 117-215 (538)
60 3pih_A Uvrabc system protein A 99.9 1.6E-25 5.4E-30 256.2 21.0 107 285-396 784-901 (916)
61 2vf7_A UVRA2, excinuclease ABC 99.9 1.4E-25 4.8E-30 254.6 16.0 106 285-396 709-826 (842)
62 2r6f_A Excinuclease ABC subuni 99.9 6.9E-25 2.3E-29 249.8 17.2 105 286-396 825-941 (972)
63 2ygr_A Uvrabc system protein A 99.9 7.6E-25 2.6E-29 250.2 16.9 106 286-397 843-960 (993)
64 2npi_A Protein CLP1; CLP1-PCF1 99.9 8E-27 2.7E-31 250.0 -3.6 175 175-396 129-337 (460)
65 4aby_A DNA repair protein RECN 99.9 7.5E-23 2.6E-27 215.5 17.2 79 311-390 296-381 (415)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.9E-21 6.6E-26 202.6 21.8 82 306-388 275-364 (365)
67 4gp7_A Metallophosphoesterase; 99.9 3.8E-22 1.3E-26 185.8 8.7 63 310-373 83-164 (171)
68 3b85_A Phosphate starvation-in 99.8 2.8E-23 9.7E-28 200.2 -3.7 138 165-371 7-161 (208)
69 2v9p_A Replication protein E1; 99.8 1.6E-24 5.5E-29 220.3 -13.6 157 171-401 113-270 (305)
70 1ye8_A Protein THEP1, hypothet 99.8 7.7E-21 2.6E-25 178.8 5.4 78 307-388 73-159 (178)
71 1e69_A Chromosome segregation 99.8 1.5E-19 5E-24 185.0 13.2 87 308-395 217-311 (322)
72 1tq4_A IIGP1, interferon-induc 99.8 5.4E-22 1.8E-26 209.5 -9.2 158 171-379 36-248 (413)
73 2o5v_A DNA replication and rep 99.8 3.5E-18 1.2E-22 177.5 16.2 86 305-395 259-354 (359)
74 3b9q_A Chloroplast SRP recepto 99.7 2.5E-19 8.6E-24 182.1 3.4 158 174-386 90-284 (302)
75 1znw_A Guanylate kinase, GMP k 99.7 2.1E-21 7.2E-26 185.9 -11.5 165 171-382 9-202 (207)
76 2vf7_A UVRA2, excinuclease ABC 99.7 1.9E-17 6.5E-22 188.2 18.6 109 281-396 355-474 (842)
77 2jeo_A Uridine-cytidine kinase 99.7 2.8E-19 9.7E-24 175.6 0.4 172 169-397 10-187 (245)
78 3qkt_A DNA double-strand break 99.7 3.4E-17 1.2E-21 168.7 15.1 78 307-385 245-332 (339)
79 1cr0_A DNA primase/helicase; R 99.7 1.3E-17 4.3E-22 167.9 10.4 181 171-386 22-237 (296)
80 3aez_A Pantothenate kinase; tr 99.7 1.7E-19 5.7E-24 184.2 -4.2 125 176-342 81-208 (312)
81 1z6g_A Guanylate kinase; struc 99.7 5.2E-21 1.8E-25 185.2 -15.7 38 171-208 10-47 (218)
82 2og2_A Putative signal recogni 99.7 5E-18 1.7E-22 176.2 5.5 157 175-386 148-341 (359)
83 2pt7_A CAG-ALFA; ATPase, prote 99.7 1.5E-18 5E-23 178.6 0.2 134 172-386 159-292 (330)
84 1tf7_A KAIC; homohexamer, hexa 99.7 3.6E-17 1.2E-21 178.1 10.7 151 178-385 275-444 (525)
85 3thx_A DNA mismatch repair pro 99.7 3.2E-17 1.1E-21 188.4 9.6 157 171-395 649-811 (934)
86 3sop_A Neuronal-specific septi 99.7 4.1E-19 1.4E-23 177.7 -8.3 130 186-366 4-149 (270)
87 2o8b_B DNA mismatch repair pro 99.7 1.1E-17 3.8E-22 194.2 2.1 158 170-394 768-939 (1022)
88 2dpy_A FLII, flagellum-specifi 99.6 4.1E-18 1.4E-22 181.5 -3.6 160 170-395 144-342 (438)
89 3pih_A Uvrabc system protein A 99.6 2.7E-15 9.2E-20 171.9 14.5 104 287-396 445-559 (916)
90 3thx_B DNA mismatch repair pro 99.6 1.3E-15 4.5E-20 174.6 9.8 141 170-377 659-804 (918)
91 4a74_A DNA repair and recombin 99.6 5.8E-15 2E-19 141.6 12.5 147 179-384 20-200 (231)
92 2r6f_A Excinuclease ABC subuni 99.6 4.8E-15 1.6E-19 169.2 13.4 102 289-396 487-599 (972)
93 1ewq_A DNA mismatch repair pro 99.6 1.3E-15 4.3E-20 172.2 7.9 132 171-375 566-704 (765)
94 2ygr_A Uvrabc system protein A 99.6 1.1E-14 3.6E-19 166.9 14.5 107 284-397 500-617 (993)
95 2ehv_A Hypothetical protein PH 99.6 1.6E-15 5.4E-20 147.3 5.1 70 311-382 118-206 (251)
96 3asz_A Uridine kinase; cytidin 99.5 1.7E-17 5.9E-22 158.2 -9.5 141 181-366 3-160 (211)
97 2obl_A ESCN; ATPase, hydrolase 99.5 1.7E-16 5.9E-21 164.1 -2.8 184 170-395 58-253 (347)
98 1f2t_B RAD50 ABC-ATPase; DNA d 99.5 1.8E-14 6.1E-19 131.4 10.7 80 306-386 53-142 (148)
99 1tf7_A KAIC; homohexamer, hexa 99.5 4.9E-16 1.7E-20 169.2 0.0 54 168-222 22-78 (525)
100 1w1w_A Structural maintenance 99.5 4.4E-14 1.5E-18 149.9 14.1 73 309-382 332-410 (430)
101 2eyu_A Twitching motility prot 99.5 2E-15 6.8E-20 150.2 2.5 133 172-383 15-147 (261)
102 2w0m_A SSO2452; RECA, SSPF, un 99.5 4.4E-14 1.5E-18 135.2 11.2 167 171-384 9-192 (235)
103 1nlf_A Regulatory protein REPA 99.5 1.7E-13 5.9E-18 136.7 13.1 138 180-369 26-182 (279)
104 1wb9_A DNA mismatch repair pro 99.5 3.1E-14 1.1E-18 161.6 7.0 145 171-390 595-751 (800)
105 2i3b_A HCR-ntpase, human cance 99.5 4.3E-16 1.5E-20 147.8 -7.7 81 307-390 80-169 (189)
106 2qnr_A Septin-2, protein NEDD5 99.5 1.3E-15 4.6E-20 154.4 -4.7 145 166-368 6-167 (301)
107 1pzn_A RAD51, DNA repair and r 99.5 5.9E-14 2E-18 145.3 7.3 163 172-392 118-310 (349)
108 2cvh_A DNA repair and recombin 99.4 2.8E-13 9.6E-18 128.9 10.9 150 172-384 7-185 (220)
109 1rj9_A FTSY, signal recognitio 99.4 5.2E-14 1.8E-18 143.0 5.5 53 311-366 203-257 (304)
110 2qag_C Septin-7; cell cycle, c 99.4 2.9E-14 1E-18 150.8 1.6 138 167-366 20-176 (418)
111 3jvv_A Twitching mobility prot 99.4 4.8E-14 1.6E-18 146.3 1.5 59 320-384 188-246 (356)
112 3kta_B Chromosome segregation 99.4 5.8E-12 2E-16 117.7 13.1 88 308-396 62-157 (173)
113 3szr_A Interferon-induced GTP- 99.2 1.4E-13 4.8E-18 152.4 -5.5 147 187-399 48-239 (608)
114 1n0w_A DNA repair protein RAD5 99.2 7E-11 2.4E-15 114.0 13.1 28 179-206 19-46 (243)
115 2qag_B Septin-6, protein NEDD5 99.2 2.3E-12 7.9E-17 136.2 2.5 153 169-354 26-202 (427)
116 1lw7_A Transcriptional regulat 99.2 1.2E-12 4E-17 136.0 -0.2 39 173-211 157-197 (365)
117 1s96_A Guanylate kinase, GMP k 99.2 1.7E-12 5.8E-17 125.7 0.6 33 178-210 10-42 (219)
118 1pui_A ENGB, probable GTP-bind 99.2 7.9E-13 2.7E-17 124.9 -1.9 61 288-353 131-193 (210)
119 4ad8_A DNA repair protein RECN 99.2 1.5E-11 5E-16 133.6 7.7 77 307-384 393-473 (517)
120 1odf_A YGR205W, hypothetical 3 99.2 1E-12 3.6E-17 132.5 -2.4 131 182-343 29-167 (290)
121 2bdt_A BH3686; alpha-beta prot 99.2 3.1E-14 1.1E-18 133.3 -13.5 79 312-395 96-182 (189)
122 1htw_A HI0065; nucleotide-bind 99.1 2.4E-12 8.4E-17 118.4 -1.3 65 170-236 19-97 (158)
123 2gza_A Type IV secretion syste 99.1 9.1E-12 3.1E-16 129.3 1.8 138 173-385 164-303 (361)
124 1zp6_A Hypothetical protein AT 99.1 1.7E-12 5.9E-17 121.2 -3.6 29 180-208 5-33 (191)
125 2ewv_A Twitching motility prot 99.1 1E-11 3.4E-16 129.6 1.4 37 173-211 127-163 (372)
126 3ec2_A DNA replication protein 99.1 5.2E-12 1.8E-16 117.3 -0.8 32 178-209 32-63 (180)
127 3auy_A DNA double-strand break 99.1 2.7E-10 9.1E-15 118.5 11.7 96 286-382 245-359 (371)
128 3e70_C DPA, signal recognition 99.1 4.9E-11 1.7E-15 122.3 5.5 31 181-211 126-156 (328)
129 1udx_A The GTP-binding protein 99.1 4.7E-12 1.6E-16 133.8 -2.7 158 174-377 147-318 (416)
130 2yhs_A FTSY, cell division pro 99.1 3.1E-11 1.1E-15 129.4 2.6 38 174-211 283-320 (503)
131 3c8u_A Fructokinase; YP_612366 99.1 5.3E-13 1.8E-17 127.4 -10.1 121 181-338 19-140 (208)
132 3lda_A DNA repair protein RAD5 99.0 1.3E-09 4.4E-14 114.7 13.9 44 179-222 173-222 (400)
133 2rcn_A Probable GTPase ENGC; Y 99.0 3.1E-11 1.1E-15 125.0 1.5 108 173-326 205-329 (358)
134 2bbw_A Adenylate kinase 4, AK4 99.0 1.1E-11 3.9E-16 121.1 -3.1 29 183-211 26-57 (246)
135 2f1r_A Molybdopterin-guanine d 99.0 6.3E-12 2.1E-16 117.2 -6.0 30 298-331 95-124 (171)
136 1nij_A Hypothetical protein YJ 99.0 2.5E-12 8.5E-17 131.2 -10.1 56 310-375 141-196 (318)
137 1p9r_A General secretion pathw 98.9 9.2E-12 3.1E-16 131.7 -7.5 41 169-211 154-194 (418)
138 1vma_A Cell division protein F 98.9 3.3E-09 1.1E-13 107.7 9.0 113 177-354 97-213 (306)
139 2kjq_A DNAA-related protein; s 98.9 2.6E-09 8.7E-14 97.0 6.8 33 173-210 30-62 (149)
140 2yv5_A YJEQ protein; hydrolase 98.8 9E-10 3.1E-14 111.5 2.7 110 180-323 161-300 (302)
141 2dr3_A UPF0273 protein PH0284; 98.8 2.1E-08 7.2E-13 96.5 11.8 56 327-383 127-196 (247)
142 2r6a_A DNAB helicase, replicat 98.8 1.4E-08 4.7E-13 108.4 10.2 179 170-386 189-401 (454)
143 2qm8_A GTPase/ATPase; G protei 98.8 7.2E-11 2.5E-15 121.5 -7.7 40 171-210 42-81 (337)
144 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 4.7E-11 1.6E-15 125.2 -12.2 63 328-392 139-208 (392)
145 3lnc_A Guanylate kinase, GMP k 98.7 1.4E-09 4.9E-14 104.9 -0.9 38 172-209 15-53 (231)
146 3tr0_A Guanylate kinase, GMP k 98.7 2.3E-09 8E-14 100.7 -0.2 32 178-209 1-32 (205)
147 1sxj_E Activator 1 40 kDa subu 98.6 8.4E-08 2.9E-12 97.9 8.8 44 325-369 131-175 (354)
148 2px0_A Flagellar biosynthesis 98.6 6.6E-08 2.3E-12 97.6 7.7 138 182-389 103-247 (296)
149 2zr9_A Protein RECA, recombina 98.6 3.8E-07 1.3E-11 94.1 13.4 43 179-221 56-98 (349)
150 3euj_A Chromosome partition pr 98.6 1.6E-08 5.6E-13 108.4 3.2 40 171-211 17-56 (483)
151 1u0l_A Probable GTPase ENGC; p 98.6 5.7E-09 2E-13 105.5 -1.0 33 179-211 164-196 (301)
152 1in4_A RUVB, holliday junction 98.5 3.5E-09 1.2E-13 108.3 -3.5 40 169-208 29-75 (334)
153 1ls1_A Signal recognition part 98.5 3.1E-07 1.1E-11 92.6 10.2 117 175-355 91-208 (295)
154 1sq5_A Pantothenate kinase; P- 98.5 1.8E-08 6.3E-13 102.0 0.8 28 182-209 78-105 (308)
155 2ius_A DNA translocase FTSK; n 98.5 5.8E-08 2E-12 104.9 4.1 31 176-206 159-189 (512)
156 1t9h_A YLOQ, probable GTPase E 98.5 2E-08 6.8E-13 101.9 -0.1 56 179-235 168-248 (307)
157 3k1j_A LON protease, ATP-depen 98.4 5.5E-08 1.9E-12 107.4 1.5 52 169-220 45-96 (604)
158 4a1f_A DNAB helicase, replicat 98.3 7.8E-07 2.7E-11 91.4 6.8 131 170-364 32-162 (338)
159 2ce7_A Cell division protein F 98.3 2.8E-07 9.6E-12 98.9 3.4 34 173-208 40-73 (476)
160 1jjv_A Dephospho-COA kinase; P 98.3 1.1E-06 3.9E-11 82.6 6.9 70 311-382 60-131 (206)
161 3kta_A Chromosome segregation 98.2 4.2E-07 1.4E-11 83.8 3.2 35 175-210 18-52 (182)
162 3vaa_A Shikimate kinase, SK; s 98.2 4.3E-07 1.5E-11 85.5 3.2 40 169-208 10-49 (199)
163 1lvg_A Guanylate kinase, GMP k 98.2 2.7E-07 9.1E-12 87.2 1.5 29 181-209 1-29 (198)
164 2j41_A Guanylate kinase; GMP, 98.2 6.7E-07 2.3E-11 83.7 3.7 32 179-210 1-32 (207)
165 3hr8_A Protein RECA; alpha and 98.2 2.4E-05 8.4E-10 80.7 14.8 43 179-221 56-98 (356)
166 3nwj_A ATSK2; P loop, shikimat 98.1 1.5E-07 5.3E-12 92.6 -1.9 40 170-209 31-73 (250)
167 2oap_1 GSPE-2, type II secreti 98.1 3.5E-07 1.2E-11 99.0 -0.5 41 172-212 248-288 (511)
168 3a00_A Guanylate kinase, GMP k 98.1 8.3E-07 2.8E-11 82.7 1.9 27 184-210 1-27 (186)
169 2xau_A PRE-mRNA-splicing facto 98.1 2.9E-06 1E-10 96.2 6.4 69 310-378 190-262 (773)
170 1kgd_A CASK, peripheral plasma 98.1 1.4E-06 4.7E-11 80.8 3.0 28 183-210 4-31 (180)
171 3bh0_A DNAB-like replicative h 98.0 6.1E-06 2.1E-10 83.6 7.3 126 170-359 54-181 (315)
172 2z43_A DNA repair and recombin 98.0 4.1E-05 1.4E-09 77.8 13.2 35 173-207 95-130 (324)
173 3uie_A Adenylyl-sulfate kinase 98.0 8.7E-07 3E-11 83.4 -0.3 41 169-209 10-50 (200)
174 2x8a_A Nuclear valosin-contain 98.0 8.1E-07 2.8E-11 88.4 -1.0 38 171-210 33-70 (274)
175 3tau_A Guanylate kinase, GMP k 97.9 3.8E-06 1.3E-10 79.7 3.7 29 182-210 6-34 (208)
176 1v5w_A DMC1, meiotic recombina 97.9 5.5E-05 1.9E-09 77.5 12.4 34 174-207 111-145 (343)
177 4eun_A Thermoresistant glucoki 97.9 3.8E-06 1.3E-10 79.0 3.2 31 178-208 23-53 (200)
178 1svm_A Large T antigen; AAA+ f 97.9 1.3E-06 4.4E-11 91.0 -0.5 38 171-208 156-193 (377)
179 3b9p_A CG5977-PA, isoform A; A 97.9 9.3E-05 3.2E-09 73.3 12.9 27 182-208 52-78 (297)
180 3tqc_A Pantothenate kinase; bi 97.9 6.2E-07 2.1E-11 91.4 -3.4 58 169-226 71-136 (321)
181 1qhl_A Protein (cell division 97.8 6.1E-07 2.1E-11 87.1 -4.2 33 178-211 22-54 (227)
182 2qt1_A Nicotinamide riboside k 97.8 9.9E-06 3.4E-10 76.3 4.1 43 180-226 17-59 (207)
183 1fnn_A CDC6P, cell division co 97.8 5.8E-05 2E-09 77.1 9.2 28 183-210 41-70 (389)
184 1kag_A SKI, shikimate kinase I 97.7 1E-05 3.5E-10 73.6 2.6 28 183-210 3-30 (173)
185 1ixz_A ATP-dependent metallopr 97.7 4.5E-06 1.6E-10 81.2 -0.1 37 171-209 38-74 (254)
186 2vp4_A Deoxynucleoside kinase; 97.7 6E-06 2.1E-10 79.6 0.7 30 178-207 14-43 (230)
187 1iy2_A ATP-dependent metallopr 97.7 4.5E-06 1.5E-10 82.6 -0.5 37 171-209 62-98 (278)
188 1knq_A Gluconate kinase; ALFA/ 97.7 1.5E-05 5.1E-10 72.8 2.8 27 182-208 6-32 (175)
189 1f2t_A RAD50 ABC-ATPase; DNA d 97.7 2E-05 6.8E-10 71.1 3.5 29 177-206 17-45 (149)
190 3ney_A 55 kDa erythrocyte memb 97.7 1.5E-05 5.2E-10 75.6 2.7 30 180-209 15-44 (197)
191 4e22_A Cytidylate kinase; P-lo 97.6 2.1E-05 7.2E-10 77.0 3.6 27 182-208 25-54 (252)
192 2qby_A CDC6 homolog 1, cell di 97.6 3.6E-05 1.2E-09 78.3 4.6 27 182-208 43-69 (386)
193 1rz3_A Hypothetical protein rb 97.6 1.6E-05 5.5E-10 74.9 1.7 30 181-210 19-48 (201)
194 1u94_A RECA protein, recombina 97.6 0.00076 2.6E-08 69.5 14.1 28 180-207 59-86 (356)
195 1zu4_A FTSY; GTPase, signal re 97.5 2E-05 6.7E-10 80.3 0.8 39 173-211 94-132 (320)
196 3llm_A ATP-dependent RNA helic 97.4 0.00014 4.7E-09 70.0 6.2 64 312-377 162-229 (235)
197 4fcw_A Chaperone protein CLPB; 97.4 0.00022 7.5E-09 70.9 7.8 27 183-209 46-72 (311)
198 3cf0_A Transitional endoplasmi 97.4 0.00065 2.2E-08 67.9 11.1 29 180-208 45-73 (301)
199 2e87_A Hypothetical protein PH 97.4 0.00021 7.1E-09 73.5 7.4 55 309-364 230-287 (357)
200 2i1q_A DNA repair and recombin 97.4 0.00076 2.6E-08 68.0 11.0 28 179-206 93-120 (322)
201 1ypw_A Transitional endoplasmi 97.4 0.00019 6.4E-09 81.8 7.2 31 179-209 233-263 (806)
202 2z4s_A Chromosomal replication 97.4 2.8E-05 9.7E-10 82.4 0.3 25 184-208 130-154 (440)
203 4eaq_A DTMP kinase, thymidylat 97.4 8.1E-05 2.8E-09 71.9 3.3 38 173-210 12-52 (229)
204 2qtf_A Protein HFLX, GTP-bindi 97.4 0.00021 7.2E-09 73.9 6.6 24 186-209 181-204 (364)
205 3cr8_A Sulfate adenylyltranfer 97.3 3.3E-05 1.1E-09 84.3 0.3 32 180-211 365-396 (552)
206 3qks_A DNA double-strand break 97.3 0.0001 3.6E-09 69.7 3.5 29 177-206 17-45 (203)
207 3kl4_A SRP54, signal recogniti 97.3 0.00045 1.6E-08 73.0 8.5 28 183-210 96-123 (433)
208 1y63_A LMAJ004144AAA protein; 97.3 0.00011 3.6E-09 68.1 3.1 32 176-207 2-33 (184)
209 4ad8_A DNA repair protein RECN 97.3 4.2E-05 1.4E-09 82.7 0.2 37 171-208 48-84 (517)
210 1cke_A CK, MSSA, protein (cyti 97.3 0.00012 4.1E-09 69.4 3.1 25 184-208 5-29 (227)
211 2p67_A LAO/AO transport system 97.2 3.7E-05 1.3E-09 78.8 -0.6 40 171-210 43-82 (341)
212 1oix_A RAS-related protein RAB 97.2 0.00014 4.6E-09 67.5 3.2 25 186-210 31-55 (191)
213 2pez_A Bifunctional 3'-phospho 97.2 0.00013 4.6E-09 66.8 3.1 28 182-209 3-30 (179)
214 2zts_A Putative uncharacterize 97.2 0.0016 5.5E-08 62.0 10.8 57 326-382 133-206 (251)
215 2qor_A Guanylate kinase; phosp 97.2 0.00014 4.6E-09 68.4 2.9 30 180-209 8-37 (204)
216 3h4m_A Proteasome-activating n 97.2 0.00099 3.4E-08 65.4 9.3 28 181-208 48-75 (285)
217 2q6t_A DNAB replication FORK h 97.2 0.00095 3.2E-08 70.6 9.7 37 171-207 187-223 (444)
218 2b8t_A Thymidine kinase; deoxy 97.2 0.00057 1.9E-08 65.9 6.8 53 328-382 89-150 (223)
219 2f9l_A RAB11B, member RAS onco 97.1 0.0002 6.7E-09 66.5 2.8 23 186-208 7-29 (199)
220 1xwi_A SKD1 protein; VPS4B, AA 97.1 0.0055 1.9E-07 61.9 13.4 27 182-208 43-69 (322)
221 3t34_A Dynamin-related protein 97.1 0.00029 9.9E-09 72.4 3.8 34 171-207 24-57 (360)
222 3ice_A Transcription terminati 97.0 0.00016 5.6E-09 75.2 1.9 33 176-208 166-198 (422)
223 2gj8_A MNME, tRNA modification 97.0 0.00028 9.6E-09 64.1 3.2 27 182-208 2-28 (172)
224 4b4t_J 26S protease regulatory 97.0 0.0022 7.4E-08 67.1 10.3 28 181-208 179-206 (405)
225 2if2_A Dephospho-COA kinase; a 97.0 0.00024 8.2E-09 66.3 2.7 21 186-206 3-23 (204)
226 1l8q_A Chromosomal replication 97.0 0.00095 3.3E-08 67.0 7.2 25 184-208 37-61 (324)
227 1m2o_B GTP-binding protein SAR 97.0 0.00028 9.6E-09 65.1 2.8 35 172-207 12-46 (190)
228 1xp8_A RECA protein, recombina 97.0 0.0051 1.7E-07 63.6 12.5 27 180-206 70-96 (366)
229 2www_A Methylmalonic aciduria 97.0 0.00032 1.1E-08 72.1 3.2 29 182-210 72-100 (349)
230 3m6a_A ATP-dependent protease 97.0 0.0001 3.5E-09 80.2 -0.6 38 172-210 97-134 (543)
231 1sxj_C Activator 1 40 kDa subu 96.9 9.6E-05 3.3E-09 75.1 -1.1 41 169-209 29-71 (340)
232 1f6b_A SAR1; gtpases, N-termin 96.9 9E-05 3.1E-09 69.1 -1.4 35 172-207 14-48 (198)
233 2ga8_A Hypothetical 39.9 kDa p 96.9 0.00011 3.7E-09 75.7 -1.0 37 172-208 10-48 (359)
234 2dhr_A FTSH; AAA+ protein, hex 96.9 0.00017 5.7E-09 77.8 0.3 36 172-209 54-89 (499)
235 3cm0_A Adenylate kinase; ATP-b 96.9 0.00043 1.5E-08 63.4 3.0 26 182-207 2-27 (186)
236 2yvu_A Probable adenylyl-sulfa 96.9 0.00046 1.6E-08 63.6 3.1 29 181-209 10-38 (186)
237 3auy_A DNA double-strand break 96.9 0.00055 1.9E-08 70.7 4.0 31 174-205 16-46 (371)
238 4b4t_H 26S protease regulatory 96.9 0.00088 3E-08 71.2 5.6 28 181-208 240-267 (467)
239 1m7g_A Adenylylsulfate kinase; 96.9 0.00039 1.3E-08 65.6 2.6 30 180-209 21-50 (211)
240 3t61_A Gluconokinase; PSI-biol 96.8 0.00042 1.4E-08 64.7 2.6 25 184-208 18-42 (202)
241 1ega_A Protein (GTP-binding pr 96.8 0.00035 1.2E-08 70.1 2.2 25 184-208 8-32 (301)
242 2wji_A Ferrous iron transport 96.8 0.00058 2E-08 61.3 3.3 23 186-208 5-27 (165)
243 4b4t_M 26S protease regulatory 96.8 0.002 7E-08 68.0 7.9 28 181-208 212-239 (434)
244 1qhx_A CPT, protein (chloramph 96.8 0.00068 2.3E-08 61.6 3.5 26 184-209 3-28 (178)
245 4b4t_L 26S protease subunit RP 96.8 0.0028 9.6E-08 67.0 8.6 28 181-208 212-239 (437)
246 3kb2_A SPBC2 prophage-derived 96.8 0.00063 2.2E-08 61.1 3.2 23 186-208 3-25 (173)
247 3syl_A Protein CBBX; photosynt 96.8 0.0095 3.2E-07 58.9 12.1 26 183-208 66-91 (309)
248 1lv7_A FTSH; alpha/beta domain 96.8 0.0004 1.4E-08 67.4 1.9 35 173-209 36-70 (257)
249 1q57_A DNA primase/helicase; d 96.8 0.018 6.3E-07 61.6 15.1 36 171-206 229-264 (503)
250 1kht_A Adenylate kinase; phosp 96.7 0.00087 3E-08 61.3 3.4 25 184-208 3-27 (192)
251 2v1u_A Cell division control p 96.7 0.0028 9.6E-08 64.2 7.5 27 182-208 42-68 (387)
252 2rhm_A Putative kinase; P-loop 96.7 0.00078 2.7E-08 61.8 3.0 27 182-208 3-29 (193)
253 2qp9_X Vacuolar protein sortin 96.6 0.0036 1.2E-07 64.2 7.9 27 182-208 82-108 (355)
254 1q3t_A Cytidylate kinase; nucl 96.6 0.00089 3E-08 64.3 3.1 28 181-208 13-40 (236)
255 3cf2_A TER ATPase, transitiona 96.6 0.0046 1.6E-07 70.1 9.2 28 181-208 235-262 (806)
256 2p5t_B PEZT; postsegregational 96.6 0.00031 1.1E-08 68.5 -0.3 30 180-209 28-57 (253)
257 4b4t_I 26S protease regulatory 96.6 0.003 1E-07 66.5 7.1 28 181-208 213-240 (437)
258 2zej_A Dardarin, leucine-rich 96.6 0.00097 3.3E-08 61.0 3.0 23 186-208 4-26 (184)
259 2wjg_A FEOB, ferrous iron tran 96.6 0.0011 3.7E-08 60.3 3.3 22 186-207 9-30 (188)
260 3lw7_A Adenylate kinase relate 96.6 0.001 3.5E-08 59.4 3.1 19 186-204 3-21 (179)
261 3cmw_A Protein RECA, recombina 96.5 0.015 5.2E-07 70.6 13.4 34 173-206 370-405 (1706)
262 2qag_A Septin-2, protein NEDD5 96.5 0.00037 1.3E-08 71.9 -0.4 33 170-208 29-61 (361)
263 3trf_A Shikimate kinase, SK; a 96.5 0.0013 4.5E-08 60.1 3.4 26 183-208 4-29 (185)
264 1np6_A Molybdopterin-guanine d 96.5 0.0011 3.9E-08 61.2 2.9 25 185-209 7-31 (174)
265 2plr_A DTMP kinase, probable t 96.5 0.0014 5E-08 60.8 3.5 27 183-209 3-29 (213)
266 3r20_A Cytidylate kinase; stru 96.5 0.0013 4.4E-08 63.8 3.2 24 185-208 10-33 (233)
267 3bgw_A DNAB-like replicative h 96.4 0.006 2.1E-07 64.6 8.5 37 170-206 183-219 (444)
268 2v54_A DTMP kinase, thymidylat 96.4 0.0015 5.3E-08 60.4 3.5 26 183-208 3-28 (204)
269 3iij_A Coilin-interacting nucl 96.4 0.0014 4.6E-08 59.9 3.1 25 183-207 10-34 (180)
270 1ly1_A Polynucleotide kinase; 96.4 0.0014 4.9E-08 59.2 3.2 22 185-206 3-24 (181)
271 4b4t_K 26S protease regulatory 96.4 0.0039 1.3E-07 65.8 6.9 28 181-208 203-230 (428)
272 2jaq_A Deoxyguanosine kinase; 96.4 0.0016 5.3E-08 60.2 3.2 24 186-209 2-25 (205)
273 2c95_A Adenylate kinase 1; tra 96.4 0.0015 5.3E-08 59.9 3.1 27 182-208 7-33 (196)
274 2ze6_A Isopentenyl transferase 96.4 0.0014 4.6E-08 64.1 2.9 23 186-208 3-25 (253)
275 3cmw_A Protein RECA, recombina 96.4 0.023 7.9E-07 69.1 13.9 29 180-208 728-756 (1706)
276 2wwf_A Thymidilate kinase, put 96.4 0.0017 5.9E-08 60.5 3.3 27 182-208 8-34 (212)
277 2ffh_A Protein (FFH); SRP54, s 96.4 0.0011 3.8E-08 69.9 2.1 35 175-211 91-125 (425)
278 1vht_A Dephospho-COA kinase; s 96.3 0.0019 6.3E-08 61.0 3.5 24 183-206 3-26 (218)
279 1ex7_A Guanylate kinase; subst 96.3 0.0015 5.3E-08 61.1 2.8 24 185-208 2-25 (186)
280 2bwj_A Adenylate kinase 5; pho 96.3 0.00064 2.2E-08 62.7 0.1 28 181-208 9-36 (199)
281 1via_A Shikimate kinase; struc 96.3 0.0016 5.6E-08 59.1 2.8 23 186-208 6-28 (175)
282 1nn5_A Similar to deoxythymidy 96.3 0.0019 6.6E-08 60.2 3.3 27 182-208 7-33 (215)
283 1tev_A UMP-CMP kinase; ploop, 96.3 0.002 7E-08 58.8 3.4 24 184-207 3-26 (196)
284 1gvn_B Zeta; postsegregational 96.3 0.0018 6.1E-08 64.6 2.9 27 182-208 31-57 (287)
285 1nks_A Adenylate kinase; therm 96.2 0.002 6.8E-08 58.8 3.0 23 186-208 3-25 (194)
286 3lxx_A GTPase IMAP family memb 96.2 0.0021 7.1E-08 61.6 3.1 24 186-209 31-54 (239)
287 1aky_A Adenylate kinase; ATP:A 96.2 0.0025 8.7E-08 60.2 3.5 27 182-208 2-28 (220)
288 3vfd_A Spastin; ATPase, microt 96.2 0.03 1E-06 57.7 12.1 27 182-208 146-172 (389)
289 1j8m_F SRP54, signal recogniti 96.2 0.00098 3.3E-08 66.9 0.6 35 175-210 89-124 (297)
290 1gtv_A TMK, thymidylate kinase 96.2 0.0011 3.9E-08 61.8 1.0 24 186-209 2-25 (214)
291 3k53_A Ferrous iron transport 96.1 0.0022 7.5E-08 62.9 2.9 23 186-208 5-27 (271)
292 1uf9_A TT1252 protein; P-loop, 96.1 0.0028 9.4E-08 58.6 3.3 23 185-207 9-31 (203)
293 2ohf_A Protein OLA1, GTP-bindi 96.1 0.0018 6.3E-08 67.6 2.3 30 178-207 16-45 (396)
294 2vli_A Antibiotic resistance p 96.1 0.0021 7.1E-08 58.5 2.3 26 183-208 4-29 (183)
295 3cmu_A Protein RECA, recombina 96.0 0.052 1.8E-06 66.9 14.6 35 173-207 370-406 (2050)
296 1zd8_A GTP:AMP phosphotransfer 96.0 0.0031 1.1E-07 59.9 3.2 27 182-208 5-31 (227)
297 3hu3_A Transitional endoplasmi 96.0 0.021 7.1E-07 61.3 9.9 28 181-208 235-262 (489)
298 1qvr_A CLPB protein; coiled co 96.0 0.0072 2.5E-07 69.1 6.7 24 185-208 589-612 (854)
299 2cdn_A Adenylate kinase; phosp 96.0 0.0038 1.3E-07 58.0 3.6 25 184-208 20-44 (201)
300 2z0h_A DTMP kinase, thymidylat 96.0 0.0034 1.2E-07 57.7 3.2 23 186-208 2-24 (197)
301 1mky_A Probable GTP-binding pr 96.0 0.003 1E-07 66.7 3.0 24 185-208 181-204 (439)
302 3q72_A GTP-binding protein RAD 95.9 0.0031 1E-07 55.8 2.6 23 186-208 4-26 (166)
303 2nzj_A GTP-binding protein REM 95.9 0.0037 1.3E-07 55.7 3.1 23 186-208 6-28 (175)
304 2erx_A GTP-binding protein DI- 95.9 0.0038 1.3E-07 55.2 3.1 22 186-207 5-26 (172)
305 2ged_A SR-beta, signal recogni 95.9 0.0032 1.1E-07 57.4 2.6 24 185-208 49-72 (193)
306 3fb4_A Adenylate kinase; psych 95.9 0.0038 1.3E-07 58.6 3.2 22 186-207 2-23 (216)
307 1z2a_A RAS-related protein RAB 95.9 0.0033 1.1E-07 55.5 2.6 22 186-207 7-28 (168)
308 2pbr_A DTMP kinase, thymidylat 95.8 0.0042 1.4E-07 56.8 3.1 23 186-208 2-24 (195)
309 3umf_A Adenylate kinase; rossm 95.8 0.0035 1.2E-07 60.1 2.7 29 180-208 25-53 (217)
310 1zak_A Adenylate kinase; ATP:A 95.8 0.0037 1.3E-07 59.1 2.8 26 183-208 4-29 (222)
311 2iyv_A Shikimate kinase, SK; t 95.8 0.0037 1.3E-07 57.0 2.8 24 185-208 3-26 (184)
312 1kao_A RAP2A; GTP-binding prot 95.8 0.0037 1.2E-07 54.9 2.6 22 186-207 5-26 (167)
313 3q85_A GTP-binding protein REM 95.8 0.0042 1.4E-07 55.1 3.0 22 187-208 5-26 (169)
314 3tw8_B RAS-related protein RAB 95.8 0.004 1.4E-07 55.7 2.9 23 186-208 11-33 (181)
315 3bos_A Putative DNA replicatio 95.8 0.0047 1.6E-07 58.1 3.5 26 183-208 51-76 (242)
316 1xjc_A MOBB protein homolog; s 95.8 0.0039 1.3E-07 57.4 2.9 25 185-209 5-29 (169)
317 3a4m_A L-seryl-tRNA(SEC) kinas 95.8 0.0045 1.5E-07 60.4 3.5 25 183-207 3-27 (260)
318 1qf9_A UMP/CMP kinase, protein 95.8 0.0043 1.5E-07 56.5 3.1 24 184-207 6-29 (194)
319 1e6c_A Shikimate kinase; phosp 95.8 0.0039 1.3E-07 56.1 2.8 24 185-208 3-26 (173)
320 3ake_A Cytidylate kinase; CMP 95.8 0.0039 1.3E-07 57.8 2.8 23 186-208 4-26 (208)
321 3dl0_A Adenylate kinase; phosp 95.8 0.0043 1.5E-07 58.2 3.2 23 186-208 2-24 (216)
322 2ce2_X GTPase HRAS; signaling 95.8 0.0036 1.2E-07 54.8 2.4 22 186-207 5-26 (166)
323 1u8z_A RAS-related protein RAL 95.8 0.0038 1.3E-07 54.8 2.6 22 186-207 6-27 (168)
324 1ukz_A Uridylate kinase; trans 95.8 0.0046 1.6E-07 57.4 3.3 25 184-208 15-39 (203)
325 2dyk_A GTP-binding protein; GT 95.8 0.0039 1.3E-07 54.7 2.6 23 186-208 3-25 (161)
326 1xx6_A Thymidine kinase; NESG, 95.8 0.014 4.7E-07 54.7 6.5 54 327-382 80-142 (191)
327 1zuh_A Shikimate kinase; alpha 95.8 0.005 1.7E-07 55.4 3.3 24 185-208 8-31 (168)
328 2dy1_A Elongation factor G; tr 95.7 0.0031 1.1E-07 70.3 2.2 32 178-209 3-34 (665)
329 1z0j_A RAB-22, RAS-related pro 95.7 0.0041 1.4E-07 54.9 2.6 23 186-208 8-30 (170)
330 2lkc_A Translation initiation 95.7 0.0061 2.1E-07 54.5 3.7 24 184-207 8-31 (178)
331 3b1v_A Ferrous iron uptake tra 95.7 0.0049 1.7E-07 61.0 3.3 23 186-208 5-27 (272)
332 1ko7_A HPR kinase/phosphatase; 95.7 0.0077 2.6E-07 60.9 4.8 37 170-207 131-167 (314)
333 1g16_A RAS-related protein SEC 95.7 0.004 1.4E-07 55.0 2.4 22 186-207 5-26 (170)
334 1fzq_A ADP-ribosylation factor 95.7 0.0043 1.5E-07 56.5 2.6 22 186-207 18-39 (181)
335 1ek0_A Protein (GTP-binding pr 95.7 0.0043 1.5E-07 54.7 2.6 23 186-208 5-27 (170)
336 2pt5_A Shikimate kinase, SK; a 95.7 0.0053 1.8E-07 55.0 3.2 23 186-208 2-24 (168)
337 1z08_A RAS-related protein RAB 95.7 0.0044 1.5E-07 54.9 2.6 22 186-207 8-29 (170)
338 1svi_A GTP-binding protein YSX 95.7 0.0044 1.5E-07 56.5 2.6 22 186-207 25-46 (195)
339 3tlx_A Adenylate kinase 2; str 95.7 0.0054 1.8E-07 59.3 3.4 25 183-207 28-52 (243)
340 1wms_A RAB-9, RAB9, RAS-relate 95.7 0.0045 1.5E-07 55.3 2.6 22 186-207 9-30 (177)
341 1ky3_A GTP-binding protein YPT 95.7 0.0046 1.6E-07 55.3 2.6 22 186-207 10-31 (182)
342 1c1y_A RAS-related protein RAP 95.7 0.0046 1.6E-07 54.5 2.6 22 186-207 5-26 (167)
343 1jbk_A CLPB protein; beta barr 95.6 0.0063 2.1E-07 54.6 3.4 26 183-208 42-67 (195)
344 3pqc_A Probable GTP-binding pr 95.6 0.0049 1.7E-07 55.9 2.6 23 186-208 25-47 (195)
345 2fn4_A P23, RAS-related protei 95.6 0.0047 1.6E-07 55.2 2.5 22 186-207 11-32 (181)
346 2cxx_A Probable GTP-binding pr 95.6 0.0051 1.7E-07 55.6 2.7 21 187-207 4-24 (190)
347 3clv_A RAB5 protein, putative; 95.6 0.0051 1.8E-07 55.8 2.6 23 186-208 9-31 (208)
348 1r2q_A RAS-related protein RAB 95.6 0.0052 1.8E-07 54.2 2.6 22 186-207 8-29 (170)
349 2hxs_A RAB-26, RAS-related pro 95.6 0.006 2E-07 54.5 3.0 22 186-207 8-29 (178)
350 3lxw_A GTPase IMAP family memb 95.6 0.0058 2E-07 59.2 3.0 23 186-208 23-45 (247)
351 4dsu_A GTPase KRAS, isoform 2B 95.5 0.0053 1.8E-07 55.3 2.6 23 186-208 6-28 (189)
352 3be4_A Adenylate kinase; malar 95.5 0.0063 2.1E-07 57.5 3.1 25 184-208 5-29 (217)
353 1moz_A ARL1, ADP-ribosylation 95.5 0.0041 1.4E-07 56.0 1.7 21 186-206 20-40 (183)
354 3bc1_A RAS-related protein RAB 95.5 0.0056 1.9E-07 55.3 2.6 22 186-207 13-34 (195)
355 1upt_A ARL1, ADP-ribosylation 95.5 0.0058 2E-07 54.1 2.6 22 186-207 9-30 (171)
356 2oil_A CATX-8, RAS-related pro 95.5 0.0059 2E-07 55.8 2.6 22 186-207 27-48 (193)
357 3t1o_A Gliding protein MGLA; G 95.5 0.0063 2.2E-07 55.2 2.8 24 186-209 16-39 (198)
358 2xb4_A Adenylate kinase; ATP-b 95.4 0.0072 2.5E-07 57.5 3.2 22 186-207 2-23 (223)
359 3e2i_A Thymidine kinase; Zn-bi 95.4 0.011 3.9E-07 56.5 4.5 54 327-382 100-162 (219)
360 3dm5_A SRP54, signal recogniti 95.4 0.099 3.4E-06 55.2 12.1 28 183-210 99-126 (443)
361 2y8e_A RAB-protein 6, GH09086P 95.4 0.0059 2E-07 54.4 2.4 22 186-207 16-37 (179)
362 1r8s_A ADP-ribosylation factor 95.4 0.0064 2.2E-07 53.5 2.6 20 187-206 3-22 (164)
363 3iby_A Ferrous iron transport 95.4 0.0065 2.2E-07 59.4 2.9 22 186-207 3-24 (256)
364 2j9r_A Thymidine kinase; TK1, 95.4 0.032 1.1E-06 53.2 7.5 53 328-382 101-162 (214)
365 1z0f_A RAB14, member RAS oncog 95.4 0.0066 2.2E-07 54.1 2.6 23 186-208 17-39 (179)
366 3sr0_A Adenylate kinase; phosp 95.4 0.0077 2.6E-07 57.1 3.2 23 186-208 2-24 (206)
367 2w58_A DNAI, primosome compone 95.4 0.0088 3E-07 55.4 3.5 24 185-208 55-78 (202)
368 2g6b_A RAS-related protein RAB 95.4 0.0067 2.3E-07 54.3 2.6 23 186-208 12-34 (180)
369 2a9k_A RAS-related protein RAL 95.4 0.0067 2.3E-07 54.5 2.6 22 186-207 20-41 (187)
370 1wf3_A GTP-binding protein; GT 95.3 0.0078 2.7E-07 60.3 3.3 22 186-207 9-30 (301)
371 3iev_A GTP-binding protein ERA 95.3 0.0079 2.7E-07 60.4 3.3 22 186-207 12-33 (308)
372 2efe_B Small GTP-binding prote 95.3 0.007 2.4E-07 54.2 2.6 22 186-207 14-35 (181)
373 1uj2_A Uridine-cytidine kinase 95.3 0.0079 2.7E-07 58.2 3.2 24 185-208 23-46 (252)
374 1ksh_A ARF-like protein 2; sma 95.3 0.008 2.7E-07 54.4 3.0 24 185-208 19-42 (186)
375 1nrj_B SR-beta, signal recogni 95.3 0.0069 2.4E-07 56.5 2.6 23 186-208 14-36 (218)
376 3cmu_A Protein RECA, recombina 95.3 0.084 2.9E-06 65.1 12.6 36 170-205 1065-1102(2050)
377 1e4v_A Adenylate kinase; trans 95.3 0.008 2.7E-07 56.5 3.0 23 186-208 2-24 (214)
378 4ag6_A VIRB4 ATPase, type IV s 95.3 0.0069 2.4E-07 62.6 2.8 26 183-208 34-59 (392)
379 3con_A GTPase NRAS; structural 95.3 0.0072 2.5E-07 54.9 2.6 22 186-207 23-44 (190)
380 2grj_A Dephospho-COA kinase; T 95.3 0.0088 3E-07 56.0 3.2 23 185-207 13-35 (192)
381 1ak2_A Adenylate kinase isoenz 95.3 0.0097 3.3E-07 56.8 3.5 26 183-208 15-40 (233)
382 2qmh_A HPR kinase/phosphorylas 95.3 0.012 4.3E-07 55.6 4.1 38 171-209 22-59 (205)
383 2bme_A RAB4A, RAS-related prot 95.3 0.007 2.4E-07 54.6 2.4 22 186-207 12-33 (186)
384 1r6b_X CLPA protein; AAA+, N-t 95.3 0.052 1.8E-06 61.0 10.0 23 186-208 490-512 (758)
385 3t5d_A Septin-7; GTP-binding p 95.2 0.0075 2.6E-07 59.2 2.8 22 186-207 10-31 (274)
386 2bov_A RAla, RAS-related prote 95.2 0.0075 2.6E-07 55.3 2.6 22 186-207 16-37 (206)
387 1vg8_A RAS-related protein RAB 95.2 0.0076 2.6E-07 55.4 2.6 23 186-208 10-32 (207)
388 3cbq_A GTP-binding protein REM 95.2 0.0069 2.4E-07 56.0 2.3 22 186-207 25-46 (195)
389 2gf0_A GTP-binding protein DI- 95.2 0.0076 2.6E-07 55.0 2.5 22 186-207 10-31 (199)
390 3a1s_A Iron(II) transport prot 95.2 0.009 3.1E-07 58.4 3.1 22 186-207 7-28 (258)
391 2gf9_A RAS-related protein RAB 95.2 0.008 2.8E-07 54.7 2.6 23 186-208 24-46 (189)
392 1zbd_A Rabphilin-3A; G protein 95.2 0.0093 3.2E-07 54.8 3.0 23 186-208 10-32 (203)
393 3tkl_A RAS-related protein RAB 95.2 0.0081 2.8E-07 54.6 2.6 23 186-208 18-40 (196)
394 2p65_A Hypothetical protein PF 95.2 0.0081 2.8E-07 53.9 2.5 25 184-208 43-67 (187)
395 2xtp_A GTPase IMAP family memb 95.2 0.0088 3E-07 57.9 2.9 23 186-208 24-46 (260)
396 2dby_A GTP-binding protein; GD 95.2 0.0077 2.6E-07 62.3 2.6 22 186-207 3-24 (368)
397 1m7b_A RND3/RHOE small GTP-bin 95.1 0.0079 2.7E-07 54.6 2.4 22 186-207 9-30 (184)
398 3kkq_A RAS-related protein M-R 95.1 0.0086 2.9E-07 53.9 2.6 22 186-207 20-41 (183)
399 2fg5_A RAB-22B, RAS-related pr 95.1 0.0082 2.8E-07 54.9 2.5 23 186-208 25-47 (192)
400 1mh1_A RAC1; GTP-binding, GTPa 95.1 0.0088 3E-07 53.7 2.6 22 186-207 7-28 (186)
401 2f6r_A COA synthase, bifunctio 95.1 0.0095 3.3E-07 59.0 3.0 22 185-206 76-97 (281)
402 4dhe_A Probable GTP-binding pr 95.1 0.006 2.1E-07 57.0 1.5 23 186-208 31-53 (223)
403 3i8s_A Ferrous iron transport 95.1 0.0093 3.2E-07 58.7 2.9 23 186-208 5-27 (274)
404 1ltq_A Polynucleotide kinase; 95.1 0.01 3.5E-07 58.6 3.2 22 185-206 3-24 (301)
405 3ihw_A Centg3; RAS, centaurin, 95.1 0.009 3.1E-07 54.6 2.6 21 186-206 22-42 (184)
406 2il1_A RAB12; G-protein, GDP, 95.1 0.0097 3.3E-07 54.6 2.8 22 186-207 28-49 (192)
407 3v9p_A DTMP kinase, thymidylat 95.1 0.0087 3E-07 57.7 2.6 28 181-208 22-49 (227)
408 1jwy_B Dynamin A GTPase domain 95.1 0.0099 3.4E-07 59.0 3.1 23 186-208 26-48 (315)
409 2qz4_A Paraplegin; AAA+, SPG7, 95.1 0.011 3.9E-07 56.7 3.3 27 182-208 37-63 (262)
410 2wsm_A Hydrogenase expression/ 95.1 0.0094 3.2E-07 55.8 2.7 23 186-208 32-54 (221)
411 2h57_A ADP-ribosylation factor 95.0 0.0084 2.9E-07 54.6 2.2 23 186-208 23-45 (190)
412 1zj6_A ADP-ribosylation factor 95.0 0.01 3.6E-07 53.8 2.9 22 186-207 18-39 (187)
413 1z06_A RAS-related protein RAB 95.0 0.0098 3.4E-07 54.1 2.6 22 186-207 22-43 (189)
414 4bas_A ADP-ribosylation factor 95.0 0.011 3.7E-07 53.9 2.9 23 186-208 19-41 (199)
415 3oes_A GTPase rhebl1; small GT 95.0 0.0091 3.1E-07 55.1 2.4 23 186-208 26-48 (201)
416 2o52_A RAS-related protein RAB 95.0 0.011 3.6E-07 54.7 2.9 22 186-207 27-48 (200)
417 1njg_A DNA polymerase III subu 95.0 0.013 4.4E-07 54.4 3.5 23 186-208 47-69 (250)
418 3t5g_A GTP-binding protein RHE 95.0 0.0094 3.2E-07 53.6 2.4 21 186-206 8-28 (181)
419 3dz8_A RAS-related protein RAB 95.0 0.0093 3.2E-07 54.4 2.4 22 186-207 25-46 (191)
420 1x3s_A RAS-related protein RAB 95.0 0.01 3.5E-07 53.9 2.6 23 186-208 17-39 (195)
421 2cjw_A GTP-binding protein GEM 95.0 0.01 3.4E-07 54.7 2.6 22 186-207 8-29 (192)
422 3zvl_A Bifunctional polynucleo 95.0 0.012 4.1E-07 61.7 3.4 28 181-208 255-282 (416)
423 2bcg_Y Protein YP2, GTP-bindin 95.0 0.0095 3.2E-07 55.0 2.4 23 186-208 10-32 (206)
424 2qu8_A Putative nucleolar GTP- 95.0 0.011 3.9E-07 55.8 3.0 22 186-207 31-52 (228)
425 4edh_A DTMP kinase, thymidylat 95.0 0.013 4.5E-07 55.7 3.4 28 182-209 4-31 (213)
426 3bwd_D RAC-like GTP-binding pr 94.9 0.01 3.6E-07 53.1 2.6 22 186-207 10-31 (182)
427 2a5j_A RAS-related protein RAB 94.9 0.01 3.6E-07 54.1 2.6 22 186-207 23-44 (191)
428 2f7s_A C25KG, RAS-related prot 94.9 0.012 4.2E-07 54.7 3.1 23 186-208 27-49 (217)
429 1zd9_A ADP-ribosylation factor 94.9 0.011 3.6E-07 54.0 2.6 22 186-207 24-45 (188)
430 2h17_A ADP-ribosylation factor 94.9 0.01 3.4E-07 53.7 2.4 22 186-207 23-44 (181)
431 3cph_A RAS-related protein SEC 94.9 0.01 3.6E-07 54.7 2.6 22 186-207 22-43 (213)
432 2atv_A RERG, RAS-like estrogen 94.9 0.011 3.8E-07 54.2 2.6 22 186-207 30-51 (196)
433 3reg_A RHO-like small GTPase; 94.9 0.011 3.8E-07 54.0 2.6 23 186-208 25-47 (194)
434 1jal_A YCHF protein; nucleotid 94.9 0.012 4.1E-07 60.7 3.1 24 184-207 2-25 (363)
435 2p5s_A RAS and EF-hand domain 94.9 0.011 3.8E-07 54.4 2.6 22 186-207 30-51 (199)
436 3a8t_A Adenylate isopentenyltr 94.9 0.016 5.5E-07 59.2 3.9 27 183-209 39-65 (339)
437 3llu_A RAS-related GTP-binding 94.8 0.014 4.7E-07 53.7 3.2 24 186-209 22-45 (196)
438 2q3h_A RAS homolog gene family 94.8 0.014 4.7E-07 53.6 3.0 22 186-207 22-43 (201)
439 2aka_B Dynamin-1; fusion prote 94.8 0.012 4E-07 57.9 2.6 23 186-208 28-50 (299)
440 2fu5_C RAS-related protein RAB 94.8 0.0089 3E-07 53.8 1.6 22 186-207 10-31 (183)
441 1a7j_A Phosphoribulokinase; tr 94.8 0.0071 2.4E-07 60.3 1.1 25 184-208 5-29 (290)
442 2ew1_A RAS-related protein RAB 94.8 0.012 3.9E-07 55.0 2.4 22 186-207 28-49 (201)
443 2vhj_A Ntpase P4, P4; non- hyd 94.8 0.015 5.2E-07 59.0 3.4 34 173-206 112-145 (331)
444 2b6h_A ADP-ribosylation factor 94.7 0.013 4.4E-07 53.8 2.7 21 186-206 31-51 (192)
445 2j1l_A RHO-related GTP-binding 94.7 0.014 4.8E-07 54.6 2.9 22 186-207 36-57 (214)
446 2iwr_A Centaurin gamma 1; ANK 94.7 0.0096 3.3E-07 53.4 1.7 22 186-207 9-30 (178)
447 2fv8_A H6, RHO-related GTP-bin 94.7 0.012 4.1E-07 54.6 2.5 22 186-207 27-48 (207)
448 3lv8_A DTMP kinase, thymidylat 94.7 0.016 5.5E-07 56.1 3.3 27 183-209 26-52 (236)
449 3c5c_A RAS-like protein 12; GD 94.7 0.014 4.7E-07 53.4 2.6 22 186-207 23-44 (187)
450 1gwn_A RHO-related GTP-binding 94.6 0.013 4.4E-07 54.8 2.4 22 186-207 30-51 (205)
451 2orw_A Thymidine kinase; TMTK, 94.6 0.018 6.1E-07 53.4 3.3 54 327-382 75-137 (184)
452 2fh5_B SR-beta, signal recogni 94.6 0.014 4.8E-07 54.2 2.6 23 186-208 9-31 (214)
453 1sxj_D Activator 1 41 kDa subu 94.6 0.0047 1.6E-07 62.1 -0.9 23 186-208 60-82 (353)
454 2h92_A Cytidylate kinase; ross 94.6 0.017 5.7E-07 54.2 3.0 25 184-208 3-27 (219)
455 2orv_A Thymidine kinase; TP4A 94.5 0.094 3.2E-06 50.6 8.2 53 327-382 89-150 (234)
456 2gco_A H9, RHO-related GTP-bin 94.5 0.014 4.9E-07 53.8 2.4 22 186-207 27-48 (201)
457 1ypw_A Transitional endoplasmi 94.5 0.006 2.1E-07 69.4 -0.2 33 177-209 504-536 (806)
458 3tmk_A Thymidylate kinase; pho 94.5 0.019 6.6E-07 54.8 3.3 29 182-210 3-31 (216)
459 3cf2_A TER ATPase, transitiona 94.5 0.079 2.7E-06 60.1 8.8 28 182-209 509-536 (806)
460 4tmk_A Protein (thymidylate ki 94.5 0.02 6.7E-07 54.5 3.3 27 183-209 2-28 (213)
461 3tqf_A HPR(Ser) kinase; transf 94.5 0.029 9.8E-07 52.0 4.3 34 172-206 5-38 (181)
462 3d3q_A TRNA delta(2)-isopenten 94.5 0.018 6.1E-07 58.9 3.2 25 185-209 8-32 (340)
463 1p5z_B DCK, deoxycytidine kina 94.5 0.012 4.2E-07 57.2 1.9 28 182-209 22-49 (263)
464 2ocp_A DGK, deoxyguanosine kin 94.4 0.02 6.8E-07 54.9 3.3 26 184-209 2-27 (241)
465 3t15_A Ribulose bisphosphate c 94.4 0.019 6.5E-07 57.0 3.1 26 183-208 35-60 (293)
466 4djt_A GTP-binding nuclear pro 94.4 0.0089 3.1E-07 55.7 0.7 22 186-207 13-34 (218)
467 2atx_A Small GTP binding prote 94.4 0.016 5.6E-07 52.7 2.5 22 186-207 20-41 (194)
468 3def_A T7I23.11 protein; chlor 94.4 0.018 6.3E-07 56.0 2.9 23 186-208 38-60 (262)
469 2g3y_A GTP-binding protein GEM 94.4 0.02 6.9E-07 54.1 3.1 22 186-207 39-60 (211)
470 3n70_A Transport activator; si 94.3 0.02 6.9E-07 50.4 2.9 25 184-208 24-48 (145)
471 2x77_A ADP-ribosylation factor 94.3 0.013 4.5E-07 53.1 1.7 21 186-206 24-44 (189)
472 1h65_A Chloroplast outer envel 94.3 0.019 6.5E-07 56.1 2.9 23 186-208 41-63 (270)
473 2yc2_C IFT27, small RAB-relate 94.3 0.0092 3.1E-07 54.7 0.5 22 186-207 22-43 (208)
474 3crm_A TRNA delta(2)-isopenten 94.3 0.021 7.2E-07 57.9 3.2 25 185-209 6-30 (323)
475 3exa_A TRNA delta(2)-isopenten 94.3 0.023 7.9E-07 57.5 3.5 26 184-209 3-28 (322)
476 2hf9_A Probable hydrogenase ni 94.2 0.019 6.5E-07 53.8 2.6 23 186-208 40-62 (226)
477 2chg_A Replication factor C sm 94.2 0.021 7.3E-07 52.3 2.9 23 186-208 40-62 (226)
478 2hup_A RAS-related protein RAB 94.2 0.019 6.4E-07 53.2 2.5 22 186-207 31-52 (201)
479 2r62_A Cell division protease 94.2 0.0096 3.3E-07 57.7 0.4 22 187-208 47-68 (268)
480 3ld9_A DTMP kinase, thymidylat 94.2 0.026 8.9E-07 54.2 3.4 27 183-209 20-46 (223)
481 3cpj_B GTP-binding protein YPT 94.2 0.02 6.9E-07 53.8 2.6 22 186-207 15-36 (223)
482 3cnl_A YLQF, putative uncharac 94.1 0.023 8E-07 55.7 3.1 24 185-208 100-123 (262)
483 3uk6_A RUVB-like 2; hexameric 94.1 0.025 8.4E-07 57.3 3.3 27 183-209 69-95 (368)
484 1sky_E F1-ATPase, F1-ATP synth 94.0 0.027 9.4E-07 59.9 3.5 34 173-207 141-174 (473)
485 4gzl_A RAS-related C3 botulinu 94.0 0.021 7.3E-07 52.9 2.4 22 186-207 32-53 (204)
486 3gmt_A Adenylate kinase; ssgci 94.0 0.026 8.7E-07 54.5 3.0 23 186-208 10-32 (230)
487 4dcu_A GTP-binding protein ENG 94.0 0.022 7.4E-07 60.3 2.7 22 186-207 25-46 (456)
488 3eie_A Vacuolar protein sortin 94.0 0.028 9.7E-07 56.4 3.4 26 183-208 50-75 (322)
489 1d2n_A N-ethylmaleimide-sensit 94.0 0.025 8.6E-07 55.0 2.9 25 183-207 63-87 (272)
490 2j0v_A RAC-like GTP-binding pr 93.9 0.022 7.6E-07 52.7 2.4 22 186-207 11-32 (212)
491 3q3j_B RHO-related GTP-binding 93.9 0.025 8.4E-07 53.0 2.6 22 186-207 29-50 (214)
492 1ofh_A ATP-dependent HSL prote 93.9 0.028 9.7E-07 55.1 3.1 25 184-208 50-74 (310)
493 3foz_A TRNA delta(2)-isopenten 93.8 0.033 1.1E-06 56.2 3.5 25 184-208 10-34 (316)
494 2a5y_B CED-4; apoptosis; HET: 93.7 1.7 5.9E-05 46.6 17.3 23 184-206 152-174 (549)
495 2qgz_A Helicase loader, putati 93.6 0.037 1.3E-06 55.5 3.5 25 184-208 152-176 (308)
496 3hws_A ATP-dependent CLP prote 93.6 0.033 1.1E-06 56.8 3.1 26 183-208 50-75 (363)
497 3d8b_A Fidgetin-like protein 1 93.6 0.037 1.3E-06 56.5 3.4 27 182-208 115-141 (357)
498 1tue_A Replication protein E1; 93.5 0.028 9.6E-07 53.5 2.2 28 181-208 55-82 (212)
499 3p32_A Probable GTPase RV1496/ 93.5 0.032 1.1E-06 57.0 2.9 24 185-208 80-103 (355)
500 3eph_A TRNA isopentenyltransfe 93.4 0.038 1.3E-06 57.7 3.3 25 184-208 2-26 (409)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.9e-41 Score=352.09 Aligned_cols=203 Identities=21% Similarity=0.272 Sum_probs=165.6
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccccCC
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHIGE 227 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~~~ 227 (521)
...+|+||||+|++||+++|+||||||||||+++|+|+++|+.+ ..+||+|+..+++.
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~ 119 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSS 119 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTT
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCC
Confidence 35799999999999999999999999999999999999987521 23899999999999
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCcc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI 307 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 307 (521)
+||+||+.|+....+... .+...+++++|+.+||.+..+.+++
T Consensus 120 ~TV~env~~~~~~~~~~~----------------------------------~~~~~~v~~lL~~vgL~~~~~~~~~--- 162 (366)
T 3tui_C 120 RTVFGNVALPLELDNTPK----------------------------------DEVKRRVTELLSLVGLGDKHDSYPS--- 162 (366)
T ss_dssp SCHHHHHHHHHHHSCCCH----------------------------------HHHHHHHHHHHHHHTCGGGTTCCTT---
T ss_pred CCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCChh---
Confidence 999999999865543211 1123356789999999988877665
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
.|||||||||+|||||+.+|++|||||||+++|......+.++++++ .+++|++++|+...+..+||+|++|++|
T Consensus 163 --~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G 240 (366)
T 3tui_C 163 --NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNG 240 (366)
T ss_dssp --TSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 59999999999999999999999999999988876666555554432 2566677789999999999999999999
Q ss_pred EEEEecCHhHHHHHHHHcCCCCCCCCCHHHHHHHh
Q 044321 385 HIVYQGPREYVLEFFKFMGFECPKRKGVADFLQEV 419 (521)
Q Consensus 385 ~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl~~v 419 (521)
++++.|++++++ ..|.......|+...
T Consensus 241 ~iv~~g~~~ev~--------~~p~~~~~~~~~~~~ 267 (366)
T 3tui_C 241 ELIEQDTVSEVF--------SHPKTPLAQKFIQST 267 (366)
T ss_dssp EEEECCBHHHHH--------SSCCSHHHHHHHHHH
T ss_pred EEEEEcCHHHHH--------hCCCcHHHHHHHhhc
Confidence 999999999984 345555556666554
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.9e-41 Score=351.74 Aligned_cols=199 Identities=21% Similarity=0.309 Sum_probs=162.8
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC---------------------CceeeecCCccccCCC
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL---------------------KNRCDISQHDVHIGEM 228 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~---------------------~~~~~v~q~d~~~~~l 228 (521)
.+.+|+||||+|++||+++|+|||||||||||++|+|++.|+. +..+||+|+..+++.+
T Consensus 16 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~l 95 (359)
T 3fvq_A 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHL 95 (359)
T ss_dssp TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTS
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCC
Confidence 4579999999999999999999999999999999999998752 1238999999999999
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
||+||+.|+....+... .+...+++++|+.+||.+..+.+++
T Consensus 96 tV~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~r~~~---- 137 (359)
T 3fvq_A 96 TVYRNIAYGLGNGKGRT----------------------------------AQERQRIEAMLELTGISELAGRYPH---- 137 (359)
T ss_dssp CHHHHHHTTSTTSSCCS----------------------------------HHHHHHHHHHHHHHTCGGGTTSCGG----
T ss_pred CHHHHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCCchHhcCChh----
Confidence 99999999765432211 1122356788999999998887775
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHH----HHHHcCCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQ----FIHILEGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~----l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
.|||||||||+|||||+.+|++|||||||+++|......+.+ +.++ .++++|+++|+..++..+||+|++|++|
T Consensus 138 -~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~-~g~tvi~vTHd~~ea~~~aDri~vl~~G 215 (359)
T 3fvq_A 138 -ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRA-NGKSAVFVSHDREEALQYADRIAVMKQG 215 (359)
T ss_dssp -GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHHHHHCSEEEEEETT
T ss_pred -hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHCCEEEEEECC
Confidence 499999999999999999999999999999988876666654 3332 3566777889999999999999999999
Q ss_pred EEEEecCHhHHHHHHHHcCCCCCCCCCHHHHH
Q 044321 385 HIVYQGPREYVLEFFKFMGFECPKRKGVADFL 416 (521)
Q Consensus 385 ~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl 416 (521)
+|+..|+++++.. .|.....+.|+
T Consensus 216 ~i~~~g~~~el~~--------~p~~~~~a~~~ 239 (359)
T 3fvq_A 216 RILQTASPHELYR--------QPADLDAALFI 239 (359)
T ss_dssp EEEEEECHHHHHH--------SCSCHHHHHHH
T ss_pred EEEEEeCHHHHHh--------CcccHHHHHhc
Confidence 9999999999853 45444455554
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.9e-41 Score=353.99 Aligned_cols=188 Identities=23% Similarity=0.342 Sum_probs=157.9
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC-----------------CceeeecCCccccCCCCHHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL-----------------KNRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~-----------------~~~~~v~q~d~~~~~lTV~E 232 (521)
...+|+||||+|++||+++|+||||||||||||+|+|+++|+. ...+||+|+..+++.+||+|
T Consensus 15 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~e 94 (381)
T 3rlf_A 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAE 94 (381)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHH
T ss_pred CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHH
Confidence 3579999999999999999999999999999999999998762 12389999999999999999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.|+.+..+... .+...+++++++.+||.+..+.++. .||
T Consensus 95 ni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~p~-----~LS 135 (381)
T 3rlf_A 95 NMSFGLKLAGAKK----------------------------------EVINQRVNQVAEVLQLAHLLDRKPK-----ALS 135 (381)
T ss_dssp HHTHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTCCGG-----GSC
T ss_pred HHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCChh-----HCC
Confidence 9999876543211 1123356789999999988887765 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
|||||||+|||||+.+|++|||||||+++|......+.+++.++ .++++|+++|+..++..+||+|++|++|+++..
T Consensus 136 GGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~ 215 (381)
T 3rlf_A 136 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV 215 (381)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999998876655555544332 256666778999999999999999999999999
Q ss_pred cCHhHHH
Q 044321 390 GPREYVL 396 (521)
Q Consensus 390 G~~~~v~ 396 (521)
|+++++.
T Consensus 216 g~~~~l~ 222 (381)
T 3rlf_A 216 GKPLELY 222 (381)
T ss_dssp ECHHHHH
T ss_pred eCHHHHH
Confidence 9999985
No 4
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=2.4e-40 Score=332.79 Aligned_cols=188 Identities=23% Similarity=0.271 Sum_probs=152.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------------ceeeecCCc-cccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------------NRCDISQHD-VHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------------~~~~v~q~d-~~~~~l 228 (521)
..+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+|++|+. ..++.+
T Consensus 21 ~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~ 100 (275)
T 3gfo_A 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSA 100 (275)
T ss_dssp CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSS
T ss_pred CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccC
Confidence 3599999999999999999999999999999999999987521 137899985 345589
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
||+||+.|+....+... .+....++++++.+||.+..+..++
T Consensus 101 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~---- 142 (275)
T 3gfo_A 101 SVYQDVSFGAVNMKLPE----------------------------------DEIRKRVDNALKRTGIEHLKDKPTH---- 142 (275)
T ss_dssp BHHHHHHHHHHTSCCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSBGG----
T ss_pred cHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCcc----
Confidence 99999999865433211 1122356778999999988887765
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.+++.++ .+++||+++|+...+..+||+|++|++|+
T Consensus 143 -~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~ 221 (275)
T 3gfo_A 143 -CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGR 221 (275)
T ss_dssp -GSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTE
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 49999999999999999999999999999988876655555544332 15566677888889999999999999999
Q ss_pred EEEecCHhHHHH
Q 044321 386 IVYQGPREYVLE 397 (521)
Q Consensus 386 iv~~G~~~~v~~ 397 (521)
+++.|++++++.
T Consensus 222 i~~~g~~~~~~~ 233 (275)
T 3gfo_A 222 VILQGNPKEVFA 233 (275)
T ss_dssp EEEEECHHHHTH
T ss_pred EEEECCHHHHhc
Confidence 999999998853
No 5
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=2.2e-40 Score=344.24 Aligned_cols=188 Identities=27% Similarity=0.330 Sum_probs=156.5
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC-----------------CceeeecCCccccCCCCHHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL-----------------KNRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~-----------------~~~~~v~q~d~~~~~lTV~E 232 (521)
.+.+|+||||+|++|++++|+|||||||||||++|+|+++|+. +..+||+|+..+++++||+|
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 94 (359)
T 2yyz_A 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFE 94 (359)
T ss_dssp TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHH
T ss_pred CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHH
Confidence 3469999999999999999999999999999999999998752 12389999999999999999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.|+.+..+... .+....++++++.+||.+..+.+++ .||
T Consensus 95 ni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~~-----~LS 135 (359)
T 2yyz_A 95 NIAFPLRARRISK----------------------------------DEVEKRVVEIARKLLIDNLLDRKPT-----QLS 135 (359)
T ss_dssp HHHGGGSSSCSHH----------------------------------HHTTHHHHHHHHHTTCGGGTTSCGG-----GSC
T ss_pred HHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCChh-----hCC
Confidence 9999754332110 0122356789999999988887765 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
|||||||+|||||+.+|++|||||||+++|......+.+++++. .++++|+++|+..++..+||+|++|++|+++..
T Consensus 136 gGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~ 215 (359)
T 2yyz_A 136 GGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQY 215 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999998887666666555432 245666678999999999999999999999999
Q ss_pred cCHhHHH
Q 044321 390 GPREYVL 396 (521)
Q Consensus 390 G~~~~v~ 396 (521)
|+++++.
T Consensus 216 g~~~~l~ 222 (359)
T 2yyz_A 216 GTPDEVY 222 (359)
T ss_dssp ECHHHHH
T ss_pred CCHHHHH
Confidence 9999885
No 6
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=3e-40 Score=343.58 Aligned_cols=188 Identities=26% Similarity=0.347 Sum_probs=156.7
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC-----------------CceeeecCCccccCCCCHHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL-----------------KNRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~-----------------~~~~~v~q~d~~~~~lTV~E 232 (521)
.+.+|+||||+|++|++++|+|||||||||||++|+|+++|+. +..+||+|+..+++++||+|
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 94 (362)
T 2it1_A 15 NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYK 94 (362)
T ss_dssp SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHH
T ss_pred CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHH
Confidence 3579999999999999999999999999999999999998752 12389999999999999999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.|+.+..+... .+....++++++.+||.+..+.+++ .||
T Consensus 95 ni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~~-----~LS 135 (362)
T 2it1_A 95 NIAFPLELRKAPR----------------------------------EEIDKKVREVAKMLHIDKLLNRYPW-----QLS 135 (362)
T ss_dssp HHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCTTCTTCCGG-----GSC
T ss_pred HHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhhCChh-----hCC
Confidence 9999865432210 0122356778999999988887765 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
|||||||+|||||+.+|++|||||||+++|......+.+++++. .++++|+++|+..++..+||+|++|++|+++..
T Consensus 136 GGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~ 215 (362)
T 2it1_A 136 GGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQV 215 (362)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999998887666665555432 145666678999999999999999999999999
Q ss_pred cCHhHHH
Q 044321 390 GPREYVL 396 (521)
Q Consensus 390 G~~~~v~ 396 (521)
|+++++.
T Consensus 216 g~~~~~~ 222 (362)
T 2it1_A 216 GTPDEVY 222 (362)
T ss_dssp ECHHHHH
T ss_pred cCHHHHH
Confidence 9999885
No 7
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=9.9e-40 Score=326.87 Aligned_cols=186 Identities=24% Similarity=0.287 Sum_probs=154.3
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV 230 (521)
.+.+|+||||+|++||+++|+||||||||||+++|+|+++|+.+ ..+|++|+..+++.+||
T Consensus 23 ~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 102 (266)
T 4g1u_C 23 QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSV 102 (266)
T ss_dssp TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBH
T ss_pred CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCH
Confidence 34799999999999999999999999999999999999987632 12789998888889999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
+||+.|+...... .+....++.+++.+||.+..+..++ .
T Consensus 103 ~e~l~~~~~~~~~------------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 141 (266)
T 4g1u_C 103 SEVIQMGRAPYGG------------------------------------SQDRQALQQVMAQTDCLALAQRDYR-----V 141 (266)
T ss_dssp HHHHHGGGTTSCS------------------------------------TTHHHHHHHHHHHTTCSTTTTSBGG-----G
T ss_pred HHHHHhhhhhcCc------------------------------------HHHHHHHHHHHHHcCChhHhcCCcc-----c
Confidence 9999987432110 0112345678999999988887765 4
Q ss_pred CChHHHHHHHHHHHHcC------CCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 311 ISGGQRKRVTTGEMLVG------PAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~------~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
|||||||||+|||||+. +|++|||||||+++|......+.+++++. ++++|++++|+..++..+||+|++|
T Consensus 142 LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl 221 (266)
T 4g1u_C 142 LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLL 221 (266)
T ss_dssp CCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEE
T ss_pred CCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEE
Confidence 99999999999999999 99999999999998876666555554432 4567777889999999999999999
Q ss_pred eCCEEEEecCHhHHH
Q 044321 382 SNGHIVYQGPREYVL 396 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~ 396 (521)
++|++++.|+++++.
T Consensus 222 ~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 222 AQGKLVACGTPEEVL 236 (266)
T ss_dssp ETTEEEEEECHHHHC
T ss_pred ECCEEEEEcCHHHHh
Confidence 999999999998873
No 8
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2e-39 Score=324.12 Aligned_cols=187 Identities=22% Similarity=0.309 Sum_probs=153.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------------ceeeecCCccccCCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------------NRCDISQHDVHIGEMT 229 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------------~~~~v~q~d~~~~~lT 229 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+|
T Consensus 37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~t 116 (263)
T 2olj_A 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMT 116 (263)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSC
T ss_pred EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCC
Confidence 4699999999999999999999999999999999999887510 1378999988889999
Q ss_pred HHHHHHHHH-HhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccC
Q 044321 230 VRETLAFSA-RCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEIL 308 (521)
Q Consensus 230 V~E~l~f~~-~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~ 308 (521)
|+||+.|+. ...+... .+....++.+++.+||.+..++.++
T Consensus 117 v~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~---- 158 (263)
T 2olj_A 117 VLNNITLAPMKVRKWPR----------------------------------EKAEAKAMELLDKVGLKDKAHAYPD---- 158 (263)
T ss_dssp HHHHHHHHHHHTSCCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCGG----
T ss_pred HHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCChh----
Confidence 999999864 2222110 0112245678999999988877665
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.|||||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++||+++|+...+..+||+|++|++|++
T Consensus 159 -~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i 237 (263)
T 2olj_A 159 -SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYI 237 (263)
T ss_dssp -GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred -hCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 49999999999999999999999999999998887666666655432 356677788999899999999999999999
Q ss_pred EEecCHhHHH
Q 044321 387 VYQGPREYVL 396 (521)
Q Consensus 387 v~~G~~~~v~ 396 (521)
++.|+++++.
T Consensus 238 ~~~g~~~~~~ 247 (263)
T 2olj_A 238 IEEGKPEDLF 247 (263)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9999998874
No 9
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=3.2e-40 Score=342.41 Aligned_cols=188 Identities=28% Similarity=0.378 Sum_probs=156.5
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC-----------------CceeeecCCccccCCCCHHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL-----------------KNRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~-----------------~~~~~v~q~d~~~~~lTV~E 232 (521)
.+.+|+||||+|++||+++|+|||||||||||++|+|+++|+. +..+||+|+..+++.+||+|
T Consensus 27 ~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 106 (355)
T 1z47_A 27 GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYD 106 (355)
T ss_dssp STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHH
T ss_pred CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHH
Confidence 3469999999999999999999999999999999999998752 12379999999999999999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.|+.+..+... .+....++++++.+||.+..+.+++ .||
T Consensus 107 ni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~r~~~-----~LS 147 (355)
T 1z47_A 107 NVSFGLREKRVPK----------------------------------DEMDARVRELLRFMRLESYANRFPH-----ELS 147 (355)
T ss_dssp HHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCGG-----GSC
T ss_pred HHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCCcc-----cCC
Confidence 9999865432210 0122356779999999988887765 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
|||||||+|||||+.+|++|||||||+++|......+.+++++. .++++|+++|+..++..+||+|++|++|+++..
T Consensus 148 GGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~ 227 (355)
T 1z47_A 148 GGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQF 227 (355)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999998887666665554432 245666678999999999999999999999999
Q ss_pred cCHhHHH
Q 044321 390 GPREYVL 396 (521)
Q Consensus 390 G~~~~v~ 396 (521)
|+++++.
T Consensus 228 g~~~~l~ 234 (355)
T 1z47_A 228 GTPEEVY 234 (355)
T ss_dssp ECHHHHH
T ss_pred cCHHHHH
Confidence 9999885
No 10
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.1e-39 Score=337.96 Aligned_cols=197 Identities=22% Similarity=0.303 Sum_probs=162.5
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E 232 (521)
.+ +|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+||+|+..+++.+||+|
T Consensus 13 ~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 91 (348)
T 3d31_A 13 NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (348)
T ss_dssp SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHH
Confidence 34 99999999999999999999999999999999999987621 1379999999999999999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.|+.+..+... . ..++++++.+||.+..+.+++ .||
T Consensus 92 nl~~~~~~~~~~~------------------------------------~-~~v~~~l~~~~L~~~~~~~~~-----~LS 129 (348)
T 3d31_A 92 NLEFGMRMKKIKD------------------------------------P-KRVLDTARDLKIEHLLDRNPL-----TLS 129 (348)
T ss_dssp HHHHHHHHHCCCC------------------------------------H-HHHHHHHHHTTCTTTTTSCGG-----GSC
T ss_pred HHHHHHHHcCCCH------------------------------------H-HHHHHHHHHcCCchHhcCChh-----hCC
Confidence 9999754322100 0 245678999999988887765 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
|||||||+|||||+.+|++|||||||+++|......+.+++++. .++++|+++|+..++..+||+|++|++|+++..
T Consensus 130 gGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~ 209 (348)
T 3d31_A 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV 209 (348)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999998887666666555432 255666678999999999999999999999999
Q ss_pred cCHhHHHHHHHHcCCCCCCCCCHHHHHH
Q 044321 390 GPREYVLEFFKFMGFECPKRKGVADFLQ 417 (521)
Q Consensus 390 G~~~~v~~~f~~~g~~~p~~~~~adfl~ 417 (521)
|+++++. ..|....++.|+.
T Consensus 210 g~~~~~~--------~~p~~~~~a~~~g 229 (348)
T 3d31_A 210 GKPEEIF--------EKPVEGRVASFVG 229 (348)
T ss_dssp ECHHHHH--------SSCCTTHHHHHHC
T ss_pred CCHHHHH--------hCcccHHHHHhcC
Confidence 9999883 4566556677764
No 11
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.1e-39 Score=320.91 Aligned_cols=188 Identities=19% Similarity=0.215 Sum_probs=147.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCccccCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDVHIGE 227 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~~~~~ 227 (521)
..+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|++.+++.
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ 97 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPL 97 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTT
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCC
Confidence 4699999999999999999999999999999999999987521 13799999999999
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccc-cccccCc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCA-DTMVGDE 306 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~-dt~vg~~ 306 (521)
+||+||+.++......... . ..+....+.++++.+||.+.. +.+++
T Consensus 98 ~tv~enl~~~~~~~~~~~~--------------------~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 144 (235)
T 3tif_A 98 LTALENVELPLIFKYRGAM--------------------S-----------GEERRKRALECLKMAELEERFANHKPN-- 144 (235)
T ss_dssp SCHHHHHHHHHHTCSSSCC--------------------C-----------HHHHHHHHHHHHHHTTCCGGGTTCCGG--
T ss_pred CcHHHHHHHHHHhhhccCC--------------------C-----------HHHHHHHHHHHHHHCCCChhhhhCChh--
Confidence 9999999997543211000 0 001123456789999998753 66554
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
.|||||||||+|||||+.+|++|||||||+++|......+.+++.+. .+++||+++|+.. +..+||+|++|++
T Consensus 145 ---~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~-~~~~~d~i~~l~~ 220 (235)
T 3tif_A 145 ---QLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN-VARFGERIIYLKD 220 (235)
T ss_dssp ---GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHTTSSEEEEEET
T ss_pred ---hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH-HHHhCCEEEEEEC
Confidence 59999999999999999999999999999998876666655555432 2455666778876 5589999999999
Q ss_pred CEEEEecCHhHH
Q 044321 384 GHIVYQGPREYV 395 (521)
Q Consensus 384 G~iv~~G~~~~v 395 (521)
|+++..++.+++
T Consensus 221 G~i~~~~~~~~~ 232 (235)
T 3tif_A 221 GEVEREEKLRGF 232 (235)
T ss_dssp TEEEEEEECC--
T ss_pred CEEEEEcChhhh
Confidence 999999987765
No 12
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.2e-39 Score=340.60 Aligned_cols=187 Identities=27% Similarity=0.363 Sum_probs=155.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC-----------------------CceeeecCCccccCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL-----------------------KNRCDISQHDVHIGE 227 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~-----------------------~~~~~v~q~d~~~~~ 227 (521)
+++|+||||+|++|++++|+|||||||||||++|+|+++|+. +..+||+|+..++++
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ 95 (372)
T 1g29_1 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPH 95 (372)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTT
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCC
Confidence 469999999999999999999999999999999999988752 013789999999999
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCcc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI 307 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 307 (521)
+||+||+.|+.+..+... .+....++++++.+||.+..+.+++
T Consensus 96 ltv~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~~--- 138 (372)
T 1g29_1 96 MTVYDNIAFPLKLRKVPR----------------------------------QEIDQRVREVAELLGLTELLNRKPR--- 138 (372)
T ss_dssp SCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHHTCGGGTTCCGG---
T ss_pred CCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCCcc---
Confidence 999999999865432211 0122356778999999988887765
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
.|||||||||+|||||+.+|++|||||||+++|......+.+++++. .++++|+++|+..++..+||+|++|++|
T Consensus 139 --~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G 216 (372)
T 1g29_1 139 --ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRG 216 (372)
T ss_dssp --GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred --cCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCC
Confidence 59999999999999999999999999999998887666665555432 2456666789999999999999999999
Q ss_pred EEEEecCHhHHH
Q 044321 385 HIVYQGPREYVL 396 (521)
Q Consensus 385 ~iv~~G~~~~v~ 396 (521)
+++..|+++++.
T Consensus 217 ~i~~~g~~~~l~ 228 (372)
T 1g29_1 217 VLQQVGSPDEVY 228 (372)
T ss_dssp EEEEEECHHHHH
T ss_pred EEEEeCCHHHHH
Confidence 999999999885
No 13
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.2e-39 Score=322.60 Aligned_cols=188 Identities=25% Similarity=0.251 Sum_probs=154.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------------ceeeecCCccccCCCCHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------------NRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------------~~~~v~q~d~~~~~lTV~E 232 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+||+|
T Consensus 28 ~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 107 (256)
T 1vpl_A 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIE 107 (256)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHH
T ss_pred EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHH
Confidence 4699999999999999999999999999999999999887521 1379999988889999999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.|.....+... .+....++++++.+||.+..++.++ .||
T Consensus 108 nl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS 148 (256)
T 1vpl_A 108 YLRFVAGFYASSS----------------------------------SEIEEMVERATEIAGLGEKIKDRVS-----TYS 148 (256)
T ss_dssp HHHHHHHHHCCCH----------------------------------HHHHHHHHHHHHHHCCGGGGGSBGG-----GCC
T ss_pred HHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHCCCchHhcCChh-----hCC
Confidence 9998654322110 0011245678999999988887765 499
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
|||||||+||+||+.+|++|||||||+++|......+.+++.+. .+++||+++|+..++..+||++++|++|++++.|
T Consensus 149 gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g 228 (256)
T 1vpl_A 149 KGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETG 228 (256)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEec
Confidence 99999999999999999999999999998887766666655433 3566777788888899999999999999999999
Q ss_pred CHhHHHH
Q 044321 391 PREYVLE 397 (521)
Q Consensus 391 ~~~~v~~ 397 (521)
+++++.+
T Consensus 229 ~~~~~~~ 235 (256)
T 1vpl_A 229 TVEELKE 235 (256)
T ss_dssp EHHHHHH
T ss_pred CHHHHHH
Confidence 9988754
No 14
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=4.5e-40 Score=343.45 Aligned_cols=187 Identities=25% Similarity=0.324 Sum_probs=149.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~ 233 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+||+|+..+++++||+||
T Consensus 24 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~en 103 (372)
T 1v43_A 24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYEN 103 (372)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHH
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHH
Confidence 4699999999999999999999999999999999999987521 23799999999999999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCCh
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISG 313 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSG 313 (521)
+.|+.+..+... .+....++++++.+||.+..+.+++ .|||
T Consensus 104 i~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSG 144 (372)
T 1v43_A 104 IAFPLKIKKFPK----------------------------------DEIDKRVRWAAELLQIEELLNRYPA-----QLSG 144 (372)
T ss_dssp HHTTCC--CCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCTT-----TCCS
T ss_pred HHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCChh-----hCCH
Confidence 999754322110 0122356778999999988887665 5999
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 314 GQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 314 GqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
||||||+|||||+.+|++|||||||+++|......+.+++++. .++++|+++|+..++..+||+|++|++|+++..|
T Consensus 145 Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g 224 (372)
T 1v43_A 145 GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIG 224 (372)
T ss_dssp SCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999998877666665555432 2456666789999999999999999999999999
Q ss_pred CHhHHH
Q 044321 391 PREYVL 396 (521)
Q Consensus 391 ~~~~v~ 396 (521)
+++++.
T Consensus 225 ~~~~l~ 230 (372)
T 1v43_A 225 SPTEVY 230 (372)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 999885
No 15
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=3.2e-39 Score=322.51 Aligned_cols=187 Identities=23% Similarity=0.284 Sum_probs=152.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC----------C----------------------ceeee
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL----------K----------------------NRCDI 218 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~----------~----------------------~~~~v 218 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+. . ..+|+
T Consensus 19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 98 (262)
T 1b0u_A 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMV 98 (262)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEE
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEE
Confidence 469999999999999999999999999999999999988751 1 13689
Q ss_pred cCCccccCCCCHHHHHHHHH-HhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc
Q 044321 219 SQHDVHIGEMTVRETLAFSA-RCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV 297 (521)
Q Consensus 219 ~q~d~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~ 297 (521)
+|+..+++.+||+||+.|+. ...+... .+....++++++.+||.+
T Consensus 99 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~ 144 (262)
T 1b0u_A 99 FQHFNLWSHMTVLENVMEAPIQVLGLSK----------------------------------HDARERALKYLAKVGIDE 144 (262)
T ss_dssp CSSCCCCTTSCHHHHHHHHHHHTTCCCH----------------------------------HHHHHHHHHHHHHTTCCH
T ss_pred ecCcccCCCCcHHHHHHhhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCCc
Confidence 99988899999999999863 2222110 011224567899999988
Q ss_pred c-ccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhh
Q 044321 298 C-ADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDL 374 (521)
Q Consensus 298 ~-~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l 374 (521)
. .++.++ .|||||||||+|||||+.+|++|||||||+++|......+.+++.+. .+++||+++|+...+..+
T Consensus 145 ~~~~~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~ 219 (262)
T 1b0u_A 145 RAQGKYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHV 219 (262)
T ss_dssp HHHTSCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHH
T ss_pred hhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 7 777665 49999999999999999999999999999998887666666555432 255566678888899999
Q ss_pred cCeEEEEeCCEEEEecCHhHHH
Q 044321 375 FDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 375 ~D~VivL~~G~iv~~G~~~~v~ 396 (521)
||+|++|++|++++.|+++++.
T Consensus 220 ~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 220 SSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp CSEEEEEETTEEEEEECHHHHH
T ss_pred CCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999998874
No 16
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.3e-39 Score=316.26 Aligned_cols=182 Identities=23% Similarity=0.260 Sum_probs=147.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------------ceeeecCCccccCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------------NRCDISQHDVHIGE 227 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------------~~~~v~q~d~~~~~ 227 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 96 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPE 96 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTT
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCC
Confidence 4699999999999999999999999999999999999887510 13789999888899
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCcc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI 307 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 307 (521)
+||+||+.|+....+... .+....++++++.+||.+..+..++
T Consensus 97 ~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 139 (224)
T 2pcj_A 97 LTALENVIVPMLKMGKPK----------------------------------KEAKERGEYLLSELGLGDKLSRKPY--- 139 (224)
T ss_dssp SCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCTTCTTCCGG---
T ss_pred CCHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCChh---
Confidence 999999998754322110 0012245678999999988887765
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
.|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+...+ .+||+|++|++|+
T Consensus 140 --~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~ 216 (224)
T 2pcj_A 140 --ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGK 216 (224)
T ss_dssp --GSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTE
T ss_pred --hCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCE
Confidence 49999999999999999999999999999998887766666655433 255666677887766 8999999999999
Q ss_pred EEEecCH
Q 044321 386 IVYQGPR 392 (521)
Q Consensus 386 iv~~G~~ 392 (521)
+++.|++
T Consensus 217 i~~~g~~ 223 (224)
T 2pcj_A 217 VVGEITR 223 (224)
T ss_dssp EEEEEEC
T ss_pred EEEEeee
Confidence 9999864
No 17
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=8.5e-40 Score=339.59 Aligned_cols=185 Identities=23% Similarity=0.293 Sum_probs=152.1
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccccCCCCH
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~~~~lTV 230 (521)
+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+||+|+..+++.+||
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv 99 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTA 99 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCH
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCH
Confidence 99999999999999999999999999999999999887521 13789999999999999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
+||+.|+.+..+... .+....++++++.+||.+..+.+++ .
T Consensus 100 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~~~~~-----~ 140 (353)
T 1oxx_K 100 FENIAFPLTNMKMSK----------------------------------EEIRKRVEEVAKILDIHHVLNHFPR-----E 140 (353)
T ss_dssp HHHHHGGGTTSSCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCGG-----G
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCChh-----h
Confidence 999999764432210 0112356779999999988887765 5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
|||||||||+|||||+.+|++|||||||+++|......+.+++++. .++++|+++|+..++..+||+|++|++|+++
T Consensus 141 LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~ 220 (353)
T 1oxx_K 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLV 220 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999987765554444443322 2455666788999999999999999999999
Q ss_pred EecCHhHHH
Q 044321 388 YQGPREYVL 396 (521)
Q Consensus 388 ~~G~~~~v~ 396 (521)
..|+++++.
T Consensus 221 ~~g~~~~l~ 229 (353)
T 1oxx_K 221 QVGKPEDLY 229 (353)
T ss_dssp EEECHHHHH
T ss_pred EEcCHHHHH
Confidence 999999885
No 18
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2.1e-39 Score=322.85 Aligned_cols=198 Identities=26% Similarity=0.338 Sum_probs=152.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~lTV 230 (521)
+++|+||||+|++|++++|+||||||||||||+|+|+++|+.+ ..+|++|+..+++.+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 99 (257)
T 1g6h_A 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTV 99 (257)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBH
T ss_pred EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcH
Confidence 4699999999999999999999999999999999999987521 13789999888889999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRG 310 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~ 310 (521)
+||+.|+......+. ...+.. ... .. ...+....++++++.+||.+..++.++ .
T Consensus 100 ~enl~~~~~~~~~~~----~~~~~~----~~~-~~------------~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 153 (257)
T 1g6h_A 100 LENLLIGEICPGESP----LNSLFY----KKW-IP------------KEEEMVEKAFKILEFLKLSHLYDRKAG-----E 153 (257)
T ss_dssp HHHHHGGGTSTTSCH----HHHHHH----CSS-CC------------CCHHHHHHHHHHHHHTTCGGGTTSBGG-----G
T ss_pred HHHHHHHHhhhccCc----cccccc----ccc-cC------------CHHHHHHHHHHHHHHcCCchhhCCCch-----h
Confidence 999998643200000 000000 000 00 000112346778999999988887765 4
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
|||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+..++..+||+|++|++|++++
T Consensus 154 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (257)
T 1g6h_A 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 233 (257)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999998887666666655433 35566667888888999999999999999999
Q ss_pred ecCHhH
Q 044321 389 QGPREY 394 (521)
Q Consensus 389 ~G~~~~ 394 (521)
.|++++
T Consensus 234 ~g~~~~ 239 (257)
T 1g6h_A 234 EGRGEE 239 (257)
T ss_dssp EEESHH
T ss_pred EeCHHH
Confidence 999888
No 19
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.4e-39 Score=331.72 Aligned_cols=239 Identities=21% Similarity=0.257 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcccc
Q 044321 85 QERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNIL 164 (521)
Q Consensus 85 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~ 164 (521)
+.....++|++++++..++. ...............|+|+||++.+.
T Consensus 19 ~~~~~~~~ri~~~l~~~~~~-----~~~~~~~~~~~~~~~i~~~~vs~~y~----------------------------- 64 (306)
T 3nh6_A 19 SHMFIDMENMFDLLKEETEV-----KDLPGAGPLRFQKGRIEFENVHFSYA----------------------------- 64 (306)
T ss_dssp CCTTCCHHHHHHHHHHHHSC-----CCCTTCBCCCCSSCCEEEEEEEEESS-----------------------------
T ss_pred HHHHHHHHHHHHHHhCCccc-----cccccccccCCCCCeEEEEEEEEEcC-----------------------------
Confidence 34456678888887654431 00001111122234699999998751
Q ss_pred cCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCcccc
Q 044321 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHI 225 (521)
Q Consensus 165 ~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~ 225 (521)
+...+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+||+|+..+|
T Consensus 65 ----~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf 140 (306)
T 3nh6_A 65 ----DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF 140 (306)
T ss_dssp ----TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCC
T ss_pred ----CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccC
Confidence 224699999999999999999999999999999999999988621 138999987766
Q ss_pred CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccC
Q 044321 226 GEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGD 305 (521)
Q Consensus 226 ~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~ 305 (521)
..||+||+.|+..... .+....+.... .. ...+. .++..++|.+|+
T Consensus 141 -~~Tv~eNi~~~~~~~~-------------------------~~~~~~~~~~~-----~l-~~~i~--~lp~gl~t~~~~ 186 (306)
T 3nh6_A 141 -NDTIADNIRYGRVTAG-------------------------NDEVEAAAQAA-----GI-HDAIM--AFPEGYRTQVGE 186 (306)
T ss_dssp -SEEHHHHHHTTSTTCC-------------------------HHHHHHHHHHH-----TC-HHHHH--HSTTGGGCEEST
T ss_pred -cccHHHHHHhhcccCC-------------------------HHHHHHHHHHh-----Cc-HHHHH--hccchhhhHhcC
Confidence 5799999998642110 00000000000 00 11122 245567788875
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
.+..|||||||||+|||||+.+|+||||||||+++|......+.+.+... .+.++|+++|+...+.. ||+|++|++|
T Consensus 187 -~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G 264 (306)
T 3nh6_A 187 -RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDG 264 (306)
T ss_dssp -TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETT
T ss_pred -CcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECC
Confidence 56689999999999999999999999999999988877666666655443 23455557788777765 9999999999
Q ss_pred EEEEecCHhHHHH
Q 044321 385 HIVYQGPREYVLE 397 (521)
Q Consensus 385 ~iv~~G~~~~v~~ 397 (521)
+|++.|++++++.
T Consensus 265 ~iv~~G~~~el~~ 277 (306)
T 3nh6_A 265 CIVERGRHEALLS 277 (306)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
No 20
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=6.3e-39 Score=316.29 Aligned_cols=186 Identities=23% Similarity=0.324 Sum_probs=149.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------ceeeecCCccccCCCCH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~~~~v~q~d~~~~~lTV 230 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+||
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv 98 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTV 98 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBH
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcH
Confidence 4699999999999999999999999999999999999887521 14799999888899999
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcC-CCccccccccCccCC
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILG-LDVCADTMVGDEILR 309 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg-L~~~~dt~vg~~~~r 309 (521)
+||+.|+.... ... .+....++.+++.++ |.+..++.++
T Consensus 99 ~enl~~~~~~~-~~~----------------------------------~~~~~~~~~~l~~~~~l~~~~~~~~~----- 138 (240)
T 1ji0_A 99 YENLMMGAYNR-KDK----------------------------------EGIKRDLEWIFSLFPRLKERLKQLGG----- 138 (240)
T ss_dssp HHHHHGGGTTC-CCS----------------------------------SHHHHHHHHHHHHCHHHHTTTTSBSS-----
T ss_pred HHHHHHhhhcC-CCH----------------------------------HHHHHHHHHHHHHcccHhhHhcCChh-----
Confidence 99998863111 000 011123456788884 8777766554
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIV 387 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv 387 (521)
.|||||||||+|||||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+..++..+||+|++|++|+++
T Consensus 139 ~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 218 (240)
T 1ji0_A 139 TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIV 218 (240)
T ss_dssp SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 59999999999999999999999999999998887766666655433 3555666778888899999999999999999
Q ss_pred EecCHhHHH
Q 044321 388 YQGPREYVL 396 (521)
Q Consensus 388 ~~G~~~~v~ 396 (521)
+.|+++++.
T Consensus 219 ~~g~~~~~~ 227 (240)
T 1ji0_A 219 LEGKASELL 227 (240)
T ss_dssp EEEEHHHHH
T ss_pred EEcCHHHHh
Confidence 999988774
No 21
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=9e-38 Score=310.49 Aligned_cols=188 Identities=14% Similarity=0.163 Sum_probs=152.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------ceeeecCCccccCCCCHHHHHHHHHHhc-cC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------NRCDISQHDVHIGEMTVRETLAFSARCQ-GV 243 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------~~~~v~q~d~~~~~lTV~E~l~f~~~~~-~~ 243 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+||+||+.|+.... +.
T Consensus 18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~ 97 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINT 97 (253)
T ss_dssp TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCT
T ss_pred CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhccc
Confidence 4699999999999999999999999999999999999988632 3489999988888999999999864221 10
Q ss_pred chhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHH
Q 044321 244 GSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGE 323 (521)
Q Consensus 244 ~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAr 323 (521)
.. ... .+....++.+++.+||.+..+..++ .|||||||||+|||
T Consensus 98 ~~-------------------~~~------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~lAr 141 (253)
T 2nq2_C 98 FA-------------------KPK------------SHDYQVAMQALDYLNLTHLAKREFT-----SLSGGQRQLILIAR 141 (253)
T ss_dssp TC-------------------CCC------------HHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHH
T ss_pred cc-------------------CCC------------HHHHHHHHHHHHHcCChHHhcCChh-----hCCHHHHHHHHHHH
Confidence 00 000 0011245678999999988877665 59999999999999
Q ss_pred HHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--C-CeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHH
Q 044321 324 MLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--E-GTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYV 395 (521)
Q Consensus 324 aLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~-~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v 395 (521)
||+.+|++|||||||+++|....+.+.+++.+. . +++||+++|+...+..+||+|++|++|+ ++.|+++++
T Consensus 142 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 142 AIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp HHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 999999999999999998887777666665443 2 5667777899888999999999999999 999998876
No 22
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.1e-38 Score=312.70 Aligned_cols=182 Identities=20% Similarity=0.253 Sum_probs=149.1
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-----------------ceeeecCCccccCCCCHHHHHH
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-----------------NRCDISQHDVHIGEMTVRETLA 235 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-----------------~~~~v~q~d~~~~~lTV~E~l~ 235 (521)
+|+||||+|++ ++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+||+||+.
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~ 92 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHH
Confidence 59999999999 99999999999999999999999887521 2378999988889999999999
Q ss_pred HHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHH
Q 044321 236 FSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQ 315 (521)
Q Consensus 236 f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGq 315 (521)
|+....+. . . ....++++++.+||.+..+..++ .|||||
T Consensus 93 ~~~~~~~~--~--------~--------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq 131 (240)
T 2onk_A 93 YGLRNVER--V--------E--------------------------RDRRVREMAEKLGIAHLLDRKPA-----RLSGGE 131 (240)
T ss_dssp TTCTTSCH--H--------H--------------------------HHHHHHHHHHTTTCTTTTTCCGG-----GSCHHH
T ss_pred HHHHHcCC--c--------h--------------------------HHHHHHHHHHHcCCHHHhcCChh-----hCCHHH
Confidence 86432110 0 0 01245678999999988877765 499999
Q ss_pred HHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCH
Q 044321 316 RKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPR 392 (521)
Q Consensus 316 rQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~ 392 (521)
||||+|||||+.+|++|||||||+++|....+.+.+++.+. .+++|++++|+..++..+||+|++|++|++++.|++
T Consensus 132 kqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~ 211 (240)
T 2onk_A 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999998887666666655432 245556667888889999999999999999999999
Q ss_pred hHHH
Q 044321 393 EYVL 396 (521)
Q Consensus 393 ~~v~ 396 (521)
+++.
T Consensus 212 ~~~~ 215 (240)
T 2onk_A 212 KELF 215 (240)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 23
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=9.4e-38 Score=312.48 Aligned_cols=187 Identities=23% Similarity=0.298 Sum_probs=152.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------ceeeecCCc-cccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------NRCDISQHD-VHIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------~~~~v~q~d-~~~~~lTV~E~ 233 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|++ ..++.+||+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~en 99 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDE 99 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHH
Confidence 4699999999999999999999999999999999999987521 137899984 46778999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC--ccccccccCccCCCC
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD--VCADTMVGDEILRGI 311 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~--~~~dt~vg~~~~r~L 311 (521)
+.|+.... ... .+....++.+++.+||. +..++.++ .|
T Consensus 100 l~~~~~~~-~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~~~-----~L 139 (266)
T 2yz2_A 100 VAFAVKNF-YPD----------------------------------RDPVPLVKKAMEFVGLDFDSFKDRVPF-----FL 139 (266)
T ss_dssp HHHTTTTT-CTT----------------------------------SCSHHHHHHHHHHTTCCHHHHTTCCGG-----GS
T ss_pred HHHHHHhc-CCH----------------------------------HHHHHHHHHHHHHcCcCCcccccCChh-----hC
Confidence 98864211 100 01122456789999998 87777665 59
Q ss_pred ChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 312 SGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 312 SGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
||||||||+||+||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+...+..+||++++|++|++++.
T Consensus 140 SgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~ 219 (266)
T 2yz2_A 140 SGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFD 219 (266)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999998887777666665443 355666778888888899999999999999999
Q ss_pred cCHhHHHH
Q 044321 390 GPREYVLE 397 (521)
Q Consensus 390 G~~~~v~~ 397 (521)
|+++++..
T Consensus 220 g~~~~~~~ 227 (266)
T 2yz2_A 220 GTRMEFLE 227 (266)
T ss_dssp EEHHHHHH
T ss_pred CCHHHHhc
Confidence 99988754
No 24
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.9e-37 Score=307.53 Aligned_cols=187 Identities=20% Similarity=0.245 Sum_probs=143.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCC--CCCCCC--------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGK--LDSSLK--------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~--l~~~~~--------------------~~~~v~q~d~~~~~l 228 (521)
+.+|+||||+|++|++++|+||||||||||+++|+|+ ++|+.+ ..+|++|++.+++.+
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 95 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGV 95 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSC
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCC
Confidence 4699999999999999999999999999999999998 544310 125789998888999
Q ss_pred CHHHHHHHHHHh-ccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCC-CccccccccCc
Q 044321 229 TVRETLAFSARC-QGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGL-DVCADTMVGDE 306 (521)
Q Consensus 229 TV~E~l~f~~~~-~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL-~~~~dt~vg~~ 306 (521)
||+||+.+.... .+... .. .+....++.+++.+|| .+..++.++
T Consensus 96 tv~e~l~~~~~~~~~~~~---------------------~~-----------~~~~~~~~~~l~~~gl~~~~~~~~~~-- 141 (250)
T 2d2e_A 96 TIANFLRLALQAKLGREV---------------------GV-----------AEFWTKVKKALELLDWDESYLSRYLN-- 141 (250)
T ss_dssp BHHHHHHHHHHHHHTSCC---------------------CH-----------HHHHHHHHHHHHHHTCCGGGGGSBTT--
T ss_pred CHHHHHHHHHHhhccccC---------------------CH-----------HHHHHHHHHHHHHcCCChhHhcCCcc--
Confidence 999999886421 11000 00 0111245678999999 466766554
Q ss_pred cCCC-CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhh-cCeEEEEe
Q 044321 307 ILRG-ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDL-FDDIILIS 382 (521)
Q Consensus 307 ~~r~-LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l-~D~VivL~ 382 (521)
. |||||||||+|||||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+...+..+ ||+|++|+
T Consensus 142 ---~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~ 218 (250)
T 2d2e_A 142 ---EGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMM 218 (250)
T ss_dssp ---CC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEE
T ss_pred ---cCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEE
Confidence 5 9999999999999999999999999999999998888877776654 356677778888888878 59999999
Q ss_pred CCEEEEecCHhH
Q 044321 383 NGHIVYQGPREY 394 (521)
Q Consensus 383 ~G~iv~~G~~~~ 394 (521)
+|++++.|+++.
T Consensus 219 ~G~i~~~g~~~~ 230 (250)
T 2d2e_A 219 DGRVVATGGPEL 230 (250)
T ss_dssp TTEEEEEESHHH
T ss_pred CCEEEEEeCHHH
Confidence 999999999873
No 25
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=3.1e-37 Score=305.60 Aligned_cols=183 Identities=24% Similarity=0.358 Sum_probs=139.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~ 231 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++ .||+
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~ 100 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSII 100 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHH
Confidence 4699999999999999999999999999999999999987521 1278999887765 6999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccc-------ccccc
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCA-------DTMVG 304 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~-------dt~vg 304 (521)
||+.|+.. ... ...+..+++.+++.+.. ++.++
T Consensus 101 enl~~~~~--~~~--------------------------------------~~~~~~~l~~~~l~~~~~~~~~gl~~~~~ 140 (247)
T 2ff7_A 101 DNISLANP--GMS--------------------------------------VEKVIYAAKLAGAHDFISELREGYNTIVG 140 (247)
T ss_dssp HHHTTTCT--TCC--------------------------------------HHHHHHHHHHHTCHHHHHTSTTGGGCBCS
T ss_pred HHHhccCC--CCC--------------------------------------HHHHHHHHHHhChHHHHHhCcchhhhhhh
Confidence 99987521 000 00122344444544332 33333
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+.+..|||||||||+|||||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+...+. .||+|++|++
T Consensus 141 -~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~-~~d~v~~l~~ 218 (247)
T 2ff7_A 141 -EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEK 218 (247)
T ss_dssp -TTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEET
T ss_pred -CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-hCCEEEEEEC
Confidence 345679999999999999999999999999999998887766666665443 3455666677776664 5999999999
Q ss_pred CEEEEecCHhHHH
Q 044321 384 GHIVYQGPREYVL 396 (521)
Q Consensus 384 G~iv~~G~~~~v~ 396 (521)
|++++.|+++++.
T Consensus 219 G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 219 GKIVEQGKHKELL 231 (247)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEECCHHHHH
Confidence 9999999998874
No 26
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2.4e-37 Score=311.64 Aligned_cols=189 Identities=28% Similarity=0.320 Sum_probs=145.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC----------C-----------ceeeecCCcccc--CC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL----------K-----------NRCDISQHDVHI--GE 227 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~----------~-----------~~~~v~q~d~~~--~~ 227 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+. . ..+|++|+...+ +.
T Consensus 34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 113 (279)
T 2ihy_A 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEG 113 (279)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTT
T ss_pred EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCC
Confidence 469999999999999999999999999999999999988751 1 136888875432 34
Q ss_pred CCHHHHHHHHHHhc-cCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCc
Q 044321 228 MTVRETLAFSARCQ-GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDE 306 (521)
Q Consensus 228 lTV~E~l~f~~~~~-~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 306 (521)
+||+||+.|+.... +.. .... .+....++.+++.+||.+..++.++
T Consensus 114 ltv~enl~~~~~~~~~~~-------------------~~~~------------~~~~~~~~~~l~~~gl~~~~~~~~~-- 160 (279)
T 2ihy_A 114 ERVIDVVISGAFKSIGVY-------------------QDID------------DEIRNEAHQLLKLVGMSAKAQQYIG-- 160 (279)
T ss_dssp SBHHHHHHTTC----------------------------CC------------HHHHHHHHHHHHHTTCGGGTTSBGG--
T ss_pred CCHHHHHHhhhhhccccc-------------------cCCc------------HHHHHHHHHHHHHcCChhHhcCChh--
Confidence 69999998753110 000 0000 0112345678999999988887765
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEE-EEEecChhHHHhhcCeEEEEe
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTIL-ISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~i-i~i~h~~~~~~~l~D~VivL~ 382 (521)
.|||||||||+|||||+.+|++|||||||+++|....+.+.+++.+. +.|+. |+++|+..++..+||+|++|+
T Consensus 161 ---~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~ 237 (279)
T 2ihy_A 161 ---YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLK 237 (279)
T ss_dssp ---GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEE
T ss_pred ---hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEE
Confidence 49999999999999999999999999999998877666655554332 44551 566788888889999999999
Q ss_pred CCEEEEecCHhHH
Q 044321 383 NGHIVYQGPREYV 395 (521)
Q Consensus 383 ~G~iv~~G~~~~v 395 (521)
+|++++.|+++++
T Consensus 238 ~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 238 DGQSIQQGAVEDI 250 (279)
T ss_dssp TTEEEEEEEHHHH
T ss_pred CCEEEEECCHHHH
Confidence 9999999998876
No 27
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.2e-36 Score=304.76 Aligned_cols=203 Identities=21% Similarity=0.217 Sum_probs=155.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC--CCCCC--------------------ceeeecCCccccCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL--DSSLK--------------------NRCDISQHDVHIGEM 228 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l--~~~~~--------------------~~~~v~q~d~~~~~l 228 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|++ .|+.+ ..+|++|+..+++.+
T Consensus 33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~ 112 (267)
T 2zu0_C 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGV 112 (267)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTC
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccc
Confidence 46999999999999999999999999999999999984 33210 136899998889999
Q ss_pred CHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCcc
Q 044321 229 TVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDEI 307 (521)
Q Consensus 229 TV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~ 307 (521)
||.|++.+...... ...+. +.... .+....++++++.+||. ...++.++
T Consensus 113 tv~e~~~~~~~~~~---------------~~~~~-~~~~~-----------~~~~~~~~~~l~~~gl~~~~~~~~~~--- 162 (267)
T 2zu0_C 113 SNQFFLQTALNAVR---------------SYRGQ-ETLDR-----------FDFQDLMEEKIALLKMPEDLLTRSVN--- 162 (267)
T ss_dssp BHHHHHHHHHHHHH---------------HGGGC-CCCCH-----------HHHHHHHHHHHHHTTCCTTTTTSBTT---
T ss_pred cHHHHHHHHHHhhh---------------hhhcc-ccCCH-----------HHHHHHHHHHHHHcCCChhHhcCCcc---
Confidence 99999987531100 00000 00000 01123466789999996 45665543
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhh-cCeEEEEeCC
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDL-FDDIILISNG 384 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l-~D~VivL~~G 384 (521)
..|||||||||+|||||+.+|++|||||||+++|....+.+.+++.+. .+++||+++|+...+..+ ||+|++|++|
T Consensus 163 -~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G 241 (267)
T 2zu0_C 163 -VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQG 241 (267)
T ss_dssp -TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETT
T ss_pred -cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECC
Confidence 149999999999999999999999999999999999888888887664 256677788888777776 8999999999
Q ss_pred EEEEecCHhHHHHHHHHcCCC
Q 044321 385 HIVYQGPREYVLEFFKFMGFE 405 (521)
Q Consensus 385 ~iv~~G~~~~v~~~f~~~g~~ 405 (521)
++++.|+++++.. ++..||.
T Consensus 242 ~i~~~g~~~~~~~-~~~~~~~ 261 (267)
T 2zu0_C 242 RIVKSGDFTLVKQ-LEEQGYG 261 (267)
T ss_dssp EEEEEECTTHHHH-HHTTTCT
T ss_pred EEEEEcCHHHHhh-hhhcchh
Confidence 9999999988753 4555554
No 28
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=6.2e-37 Score=307.37 Aligned_cols=189 Identities=19% Similarity=0.288 Sum_probs=146.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV~ 231 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++ .||+
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~ 110 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFR 110 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHH
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCcccc-ccHH
Confidence 4699999999999999999999999999999999999987521 1378999887766 6999
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHc--CCCccccccccCccCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKIL--GLDVCADTMVGDEILR 309 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l--gL~~~~dt~vg~~~~r 309 (521)
||+.|+.... ... ..+.... ....++.+++.+ ||....+..+ .
T Consensus 111 enl~~~~~~~--~~~----~~~~~~~------------------------~~~~~~~~l~~l~~gl~~~~~~~~-----~ 155 (271)
T 2ixe_A 111 ENIAYGLTRT--PTM----EEITAVA------------------------MESGAHDFISGFPQGYDTEVGETG-----N 155 (271)
T ss_dssp HHHHTTCSSC--CCH----HHHHHHH------------------------HHHTCHHHHHHSTTGGGSBCCGGG-----T
T ss_pred HHHhhhcccC--ChH----HHHHHHH------------------------HHHhHHHHHHhhhcchhhhhcCCc-----C
Confidence 9998863210 000 0000000 001234567777 6766555544 4
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-C--CeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-E--GTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~--~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
.|||||||||+|||||+.+|++|||||||+++|....+.+.+++.+. . +++||+++|+...+. .||+|++|++|++
T Consensus 156 ~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~-~~d~v~~l~~G~i 234 (271)
T 2ixe_A 156 QLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAE-RAHHILFLKEGSV 234 (271)
T ss_dssp TSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHT-TCSEEEEEETTEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEE
Confidence 69999999999999999999999999999999998888888877665 2 567777788887765 5999999999999
Q ss_pred EEecCHhHHH
Q 044321 387 VYQGPREYVL 396 (521)
Q Consensus 387 v~~G~~~~v~ 396 (521)
++.|+++++.
T Consensus 235 ~~~g~~~~l~ 244 (271)
T 2ixe_A 235 CEQGTHLQLM 244 (271)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9999998875
No 29
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.1e-36 Score=300.99 Aligned_cols=178 Identities=19% Similarity=0.140 Sum_probs=150.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------cee-eecCCccccCCCCHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------NRC-DISQHDVHIGEMTVRET 233 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------~~~-~v~q~d~~~~~lTV~E~ 233 (521)
+.+|+||||+|+ |++++|+|||||||||||++|+|++ |+.+ ..+ |++|+..+ .+||+||
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~en 93 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDI 93 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHHHH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHHHH
Confidence 469999999999 9999999999999999999999999 7521 135 88887655 8999999
Q ss_pred HHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCccCCCCC
Q 044321 234 LAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDEILRGIS 312 (521)
Q Consensus 234 l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~~r~LS 312 (521)
+.|...... .....++.+++.+||. +..++.++ .||
T Consensus 94 l~~~~~~~~--------------------------------------~~~~~~~~~l~~~gl~~~~~~~~~~-----~LS 130 (263)
T 2pjz_A 94 VYLYEELKG--------------------------------------LDRDLFLEMLKALKLGEEILRRKLY-----KLS 130 (263)
T ss_dssp HHHHHHHTC--------------------------------------CCHHHHHHHHHHTTCCGGGGGSBGG-----GSC
T ss_pred HHHhhhhcc--------------------------------------hHHHHHHHHHHHcCCChhHhcCChh-----hCC
Confidence 988642210 0012356688999998 87776665 599
Q ss_pred hHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcC-eEEEEeCCEEEEecC
Q 044321 313 GGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFD-DIILISNGHIVYQGP 391 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D-~VivL~~G~iv~~G~ 391 (521)
|||||||+||+||+.+|++|||||||+++|....+.+.+++.+... ++++++|+...+..+|| ++++|++|++++.|+
T Consensus 131 gGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~ 209 (263)
T 2pjz_A 131 AGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPIS 209 (263)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecC
Confidence 9999999999999999999999999999999999999988877655 66667888888889999 999999999999999
Q ss_pred HhHHH
Q 044321 392 REYVL 396 (521)
Q Consensus 392 ~~~v~ 396 (521)
++++.
T Consensus 210 ~~~l~ 214 (263)
T 2pjz_A 210 VSELL 214 (263)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 30
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.4e-36 Score=334.86 Aligned_cols=241 Identities=19% Similarity=0.301 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
.++...+++|+.++++.+++. .+.......+.....++++|+++.+.
T Consensus 304 ~~~~~~s~~ri~~~l~~~~~~-----~~~~~~~~~~~~~~~i~~~~v~~~y~---------------------------- 350 (578)
T 4a82_A 304 LTQSFASMDRVFQLIDEDYDI-----KNGVGAQPIEIKQGRIDIDHVSFQYN---------------------------- 350 (578)
T ss_dssp HHHHHHHHHHHHHHHTCCCSS-----CCCTTCCCCCCCSCCEEEEEEEECSC----------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCcc-----cCCCCccccCCCCCeEEEEEEEEEcC----------------------------
Confidence 567788899999998876641 01000011112234699999998752
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccc
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVH 224 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~ 224 (521)
.+..++|+||||+|++||+++|+||||||||||+++|+|+++|+.+ ..+|++|++.+
T Consensus 351 ----~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l 426 (578)
T 4a82_A 351 ----DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNIL 426 (578)
T ss_dssp ----SSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCC
T ss_pred ----CCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCcc
Confidence 1224699999999999999999999999999999999999988621 13899998877
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++ .||+||+.|+... .+.+...++....+ . ... .-.+++..+|.+|
T Consensus 427 ~~-~tv~eni~~~~~~-------------------------~~~~~~~~~~~~~~-----~-~~~--~~~lp~g~~t~~~ 472 (578)
T 4a82_A 427 FS-DTVKENILLGRPT-------------------------ATDEEVVEAAKMAN-----A-HDF--IMNLPQGYDTEVG 472 (578)
T ss_dssp CS-SBHHHHHGGGCSS-------------------------CCHHHHHHHHHHTT-----C-HHH--HHTSTTGGGCBCC
T ss_pred Cc-ccHHHHHhcCCCC-------------------------CCHHHHHHHHHHhC-----c-HHH--HHhCcchhhhhhc
Confidence 65 5999999885210 01111111111000 0 111 1246777889998
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+ .+..|||||||||+|||||+.+|++|+|||||+++|....+.+.+.+... .+.++++++|+...+ ..||+|++|++
T Consensus 473 ~-~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~-~~~d~i~~l~~ 550 (578)
T 4a82_A 473 E-RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTI-THADKIVVIEN 550 (578)
T ss_dssp G-GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGT-TTCSEEEEEET
T ss_pred c-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH-HcCCEEEEEEC
Confidence 5 56689999999999999999999999999999999887777777666443 334555567777665 56999999999
Q ss_pred CEEEEecCHhHHHH
Q 044321 384 GHIVYQGPREYVLE 397 (521)
Q Consensus 384 G~iv~~G~~~~v~~ 397 (521)
|++++.|+++++.+
T Consensus 551 G~i~~~g~~~el~~ 564 (578)
T 4a82_A 551 GHIVETGTHRELIA 564 (578)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999864
No 31
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=9.9e-37 Score=302.30 Aligned_cols=179 Identities=25% Similarity=0.318 Sum_probs=149.3
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCc-------------------eeeecCCccccCCCCHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKN-------------------RCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~-------------------~~~v~q~d~~~~~lTV~E 232 (521)
.+|+||||+|++|++++|+|||||||||||++|+|+++|+ +. .+|++|+..+++.+||+|
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 92 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWH 92 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHH
Confidence 4899999999999999999999999999999999999875 21 278999888888899999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGIS 312 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LS 312 (521)
|+.|+... .. . ...++.+++.+||.+..++.++ .||
T Consensus 93 ~l~~~~~~-~~-----------------------~---------------~~~~~~~l~~~~l~~~~~~~~~-----~LS 128 (249)
T 2qi9_C 93 YLTLHQHD-KT-----------------------R---------------TELLNDVAGALALDDKLGRSTN-----QLS 128 (249)
T ss_dssp HHHTTCSS-TT-----------------------C---------------HHHHHHHHHHTTCGGGTTSBGG-----GCC
T ss_pred HHHHhhcc-CC-----------------------c---------------HHHHHHHHHHcCChhHhcCChh-----hCC
Confidence 99875210 00 0 1134668899999888877665 599
Q ss_pred hHHHHHHHHHHHHcCCCc-------EEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 313 GGQRKRVTTGEMLVGPAQ-------ALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 313 GGqrQRvaIAraLv~~P~-------iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
|||||||+||+||+.+|+ +|||||||+++|....+.+.+++.+. .+++||+++|+...+..+||++++|++
T Consensus 129 gGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~ 208 (249)
T 2qi9_C 129 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKG 208 (249)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEET
T ss_pred HHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999 99999999998887776666665443 355667778998888899999999999
Q ss_pred CEEEEecCHhHH
Q 044321 384 GHIVYQGPREYV 395 (521)
Q Consensus 384 G~iv~~G~~~~v 395 (521)
|++++.|+++++
T Consensus 209 G~i~~~g~~~~~ 220 (249)
T 2qi9_C 209 GKMLASGRREEV 220 (249)
T ss_dssp TEEEEEEEHHHH
T ss_pred CEEEEeCCHHHH
Confidence 999999998876
No 32
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.8e-36 Score=333.08 Aligned_cols=241 Identities=20% Similarity=0.266 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCCceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhccc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLNI 163 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~ 163 (521)
.++...+++|+.++++..++. .+.......+.+...|+|+|+++.+.
T Consensus 306 ~~~~~~s~~ri~~~l~~~~~~-----~~~~~~~~~~~~~~~i~~~~v~~~y~---------------------------- 352 (587)
T 3qf4_A 306 IVRASASAKRVLEVLNEKPAI-----EEADNALALPNVEGSVSFENVEFRYF---------------------------- 352 (587)
T ss_dssp HHHHHHHHHHHHHHHHCCCSC-----CCCTTCBCCSCCCCCEEEEEEEECSS----------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCcc-----CCCCCccccCCCCCcEEEEEEEEEcC----------------------------
Confidence 456778889999888765531 00000001111234699999998752
Q ss_pred ccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccc
Q 044321 164 LPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVH 224 (521)
Q Consensus 164 ~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~ 224 (521)
.+...+|+||||+|++||+++|+||||||||||+++|+|+++|+.+ ..+||+|++.+
T Consensus 353 ----~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 428 (587)
T 3qf4_A 353 ----ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVL 428 (587)
T ss_dssp ----SSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCC
T ss_pred ----CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcC
Confidence 1234699999999999999999999999999999999999988621 12899998877
Q ss_pred cCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc
Q 044321 225 IGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG 304 (521)
Q Consensus 225 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg 304 (521)
++ .||+||+.|+... .+.+...++.... .. .+.+ -.+++..+|.+|
T Consensus 429 f~-~tv~eni~~~~~~-------------------------~~~~~~~~~~~~~-----~~-~~~i--~~l~~g~~~~~~ 474 (587)
T 3qf4_A 429 FS-GTIKENLKWGRED-------------------------ATDDEIVEAAKIA-----QI-HDFI--ISLPEGYDSRVE 474 (587)
T ss_dssp CS-EEHHHHHTTTCSS-------------------------CCHHHHHHHHHHT-----TC-HHHH--HTSSSGGGCEEC
T ss_pred cC-ccHHHHHhccCCC-------------------------CCHHHHHHHHHHh-----Cc-HHHH--HhcccchhhHhc
Confidence 64 6999999875311 0111111111000 01 1111 246677888887
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+ .+..|||||||||+|||||+.+|++|||||||+++|....+.+.+.+.+. .+.++++++|+...+ ..||+|++|++
T Consensus 475 ~-~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~-~~~d~i~vl~~ 552 (587)
T 3qf4_A 475 R-GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTA-LLADKILVLHE 552 (587)
T ss_dssp S-SSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHH-TTSSEEEEEET
T ss_pred C-CCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHH-HhCCEEEEEEC
Confidence 5 56789999999999999999999999999999998887777777666543 345555567777655 58999999999
Q ss_pred CEEEEecCHhHHHH
Q 044321 384 GHIVYQGPREYVLE 397 (521)
Q Consensus 384 G~iv~~G~~~~v~~ 397 (521)
|++++.|+++++.+
T Consensus 553 G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 553 GKVAGFGTHKELLE 566 (587)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999864
No 33
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=3.9e-36 Score=294.36 Aligned_cols=189 Identities=20% Similarity=0.251 Sum_probs=140.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------ceeeecCCccccCCCCHHHHHHHHHHhccCc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------NRCDISQHDVHIGEMTVRETLAFSARCQGVG 244 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~ 244 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|..+ ..+|++|++.+++ .||+||+.|+...
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~-~tv~enl~~~~~~---- 95 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP-GTIKENIIFGVSY---- 95 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCS-BCHHHHHHTTSCC----
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccC-CCHHHHhhccCCc----
Confidence 4699999999999999999999999999999999999988632 2479999987776 5999999885311
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHH
Q 044321 245 SRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEM 324 (521)
Q Consensus 245 ~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAra 324 (521)
... ... + ..+.. .....++. ++...++.++. .+..|||||||||+||||
T Consensus 96 ~~~----~~~--~-------------~~~~~---------~l~~~~~~--~~~~~~~~~~~-~~~~LSgGqkqrv~lAra 144 (229)
T 2pze_A 96 DEY----RYR--S-------------VIKAC---------QLEEDISK--FAEKDNIVLGE-GGITLSGGQRARISLARA 144 (229)
T ss_dssp CHH----HHH--H-------------HHHHT---------TCHHHHTT--STTGGGSCBCT-TCTTSCHHHHHHHHHHHH
T ss_pred ChH----HHH--H-------------HHHHh---------CcHHHHHh--CcccccccccC-CCCcCCHHHHHHHHHHHH
Confidence 000 000 0 00000 00111221 22233444443 456899999999999999
Q ss_pred HcCCCcEEEEeCCChhhHHHHHHHHHHH-HHHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 325 LVGPAQALFMDEISNSTTFQIVNSLRQF-IHIL-EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 325 Lv~~P~iLlLDEPTs~~~~~i~~~L~~l-~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
|+.+|++|||||||+++|....+.+.++ +... .++++|+++|+...+. .||+|++|++|++++.|+++++.
T Consensus 145 l~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 145 VYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQ 217 (229)
T ss_dssp HHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTEEEEEECHHHHH
T ss_pred HhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999998888875 3222 3456666778876664 69999999999999999998874
No 34
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.2e-37 Score=321.60 Aligned_cols=195 Identities=22% Similarity=0.194 Sum_probs=151.5
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC-------------------CceeeecCCccccCCCCH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL-------------------KNRCDISQHDVHIGEMTV 230 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~-------------------~~~~~v~q~d~~~~~lTV 230 (521)
...+|+||||+|++||+++|+|||||||||||++|+|+++ +. ...+||+|+..+|+ +||
T Consensus 33 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv 110 (390)
T 3gd7_A 33 GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTF 110 (390)
T ss_dssp SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEH
T ss_pred CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-cCH
Confidence 3469999999999999999999999999999999999875 31 12379999887776 799
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccC-----
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGD----- 305 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~----- 305 (521)
+||+.+... . ....+.++++.+||.+..+.++..
T Consensus 111 ~enl~~~~~---~--------------------------------------~~~~v~~~l~~~~L~~~~~~~p~~l~~~i 149 (390)
T 3gd7_A 111 RKNLDPNAA---H--------------------------------------SDQEIWKVADEVGLRSVIEQFPGKLDFVL 149 (390)
T ss_dssp HHHHCTTCC---S--------------------------------------CHHHHHHHHHHTTCHHHHTTSTTGGGCEE
T ss_pred HHHhhhccc---c--------------------------------------CHHHHHHHHHHhCCHHHHhhccccccccc
Confidence 999864210 0 011244577788887666554432
Q ss_pred -ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 306 -EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 306 -~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
+....|||||||||+|||||+.+|++|||||||+++|......+++.+++. .++++|++||+. ++...||+|++|++
T Consensus 150 ~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~-e~~~~aDri~vl~~ 228 (390)
T 3gd7_A 150 VDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARI-EAMLECDQFLVIEE 228 (390)
T ss_dssp CTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSS-GGGTTCSEEEEEET
T ss_pred ccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCH-HHHHhCCEEEEEEC
Confidence 223449999999999999999999999999999999998888888877654 345666677775 45567999999999
Q ss_pred CEEEEecCHhHHHHHHHHcCCCCCCCCCHHHHH
Q 044321 384 GHIVYQGPREYVLEFFKFMGFECPKRKGVADFL 416 (521)
Q Consensus 384 G~iv~~G~~~~v~~~f~~~g~~~p~~~~~adfl 416 (521)
|+|+..|+++++.. .|....+++|+
T Consensus 229 G~i~~~g~~~el~~--------~p~~~~va~f~ 253 (390)
T 3gd7_A 229 NKVRQYDSILELYH--------YPADRFVAGFI 253 (390)
T ss_dssp TEEEEESSHHHHHH--------CCSBHHHHHHS
T ss_pred CEEEEECCHHHHHh--------CCCchHHHhhc
Confidence 99999999999853 45555555554
No 35
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=5.6e-37 Score=302.83 Aligned_cols=183 Identities=21% Similarity=0.275 Sum_probs=140.3
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCccccCCCCH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDVHIGEMTV 230 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~~~~~lTV 230 (521)
.+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|++.+++ .||
T Consensus 14 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~tv 92 (243)
T 1mv5_A 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GTI 92 (243)
T ss_dssp SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EEH
T ss_pred CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-ccH
Confidence 34699999999999999999999999999999999999887521 1378999887665 699
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc------
Q 044321 231 RETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG------ 304 (521)
Q Consensus 231 ~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg------ 304 (521)
+||+.|+... .. . ...+..+++.+++.+..+..+.
T Consensus 93 ~enl~~~~~~-~~-----------------------~---------------~~~~~~~l~~~~l~~~~~~~~~gl~~~~ 133 (243)
T 1mv5_A 93 RENLTYGLEG-DY-----------------------T---------------DEDLWQVLDLAFARSFVENMPDQLNTEV 133 (243)
T ss_dssp HHHTTSCTTS-CS-----------------------C---------------HHHHHHHHHHHTCTTTTTSSTTGGGCEE
T ss_pred HHHHhhhccC-CC-----------------------C---------------HHHHHHHHHHhChHHHHHhCccchhchh
Confidence 9999875210 00 0 0123456777787765544321
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHH----HHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEE
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQ----IVNSLRQFIHILEGTILISLLQPAPETYDLFDDIIL 380 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~----i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~Viv 380 (521)
++.+..|||||||||+|||||+.+|++|||||||+++|.. +.+.|+++. .+++||+++|+...+ ..||+|++
T Consensus 134 ~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~---~~~tvi~vtH~~~~~-~~~d~v~~ 209 (243)
T 1mv5_A 134 GERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM---KGRTTLVIAHRLSTI-VDADKIYF 209 (243)
T ss_dssp STTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH---TTSEEEEECCSHHHH-HHCSEEEE
T ss_pred ccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc---CCCEEEEEeCChHHH-HhCCEEEE
Confidence 2345689999999999999999999999999999987764 555555543 245556667777666 46999999
Q ss_pred EeCCEEEEecCHhHHH
Q 044321 381 ISNGHIVYQGPREYVL 396 (521)
Q Consensus 381 L~~G~iv~~G~~~~v~ 396 (521)
|++|++++.|+++++.
T Consensus 210 l~~G~i~~~g~~~~~~ 225 (243)
T 1mv5_A 210 IEKGQITGSGKHNELV 225 (243)
T ss_dssp EETTEECCCSCHHHHH
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999998875
No 36
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=4.9e-36 Score=299.11 Aligned_cols=184 Identities=22% Similarity=0.265 Sum_probs=141.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC------------------CceeeecCCccccCCCCHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL------------------KNRCDISQHDVHIGEMTVRE 232 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~------------------~~~~~v~q~d~~~~~lTV~E 232 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|++++.. ...+|++|+..+++ .||+|
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~e 111 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKY 111 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHH
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHH
Confidence 369999999999999999999999999999999999987521 01378999887765 69999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHc-------CCCccccccccC
Q 044321 233 TLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKIL-------GLDVCADTMVGD 305 (521)
Q Consensus 233 ~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l-------gL~~~~dt~vg~ 305 (521)
|+.|+.. .. .. + .+..+++.+ ++++..++.++.
T Consensus 112 nl~~~~~--~~-~~----------------------~---------------~~~~~l~~~~l~~~~~~l~~~~~~~~~~ 151 (260)
T 2ghi_A 112 NILYGKL--DA-TD----------------------E---------------EVIKATKSAQLYDFIEALPKKWDTIVGN 151 (260)
T ss_dssp HHHTTCT--TC-CH----------------------H---------------HHHHHHHHTTCHHHHHTSTTGGGCEESS
T ss_pred HHhccCC--CC-CH----------------------H---------------HHHHHHHHhCCHHHHHhccccccccccC
Confidence 9987521 00 00 0 011223333 345556666653
Q ss_pred ccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 306 EILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
.+..|||||||||+|||||+.+|++|||||||+++|......+.+++.+. .+.+||+++|+...+ ..||+|++|++|
T Consensus 152 -~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~-~~~d~i~~l~~G 229 (260)
T 2ghi_A 152 -KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTI-SSAESIILLNKG 229 (260)
T ss_dssp -SSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGS-TTCSEEEEEETT
T ss_pred -CcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHH-HhCCEEEEEECC
Confidence 56789999999999999999999999999999999988877777766544 345666677777665 469999999999
Q ss_pred EEEEecCHhHHHH
Q 044321 385 HIVYQGPREYVLE 397 (521)
Q Consensus 385 ~iv~~G~~~~v~~ 397 (521)
++++.|+++++..
T Consensus 230 ~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 230 KIVEKGTHKDLLK 242 (260)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999988753
No 37
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=3.1e-36 Score=296.54 Aligned_cols=188 Identities=21% Similarity=0.254 Sum_probs=140.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------ceeeecCCccccCCCCHHHHHHHHHHhccCc
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------NRCDISQHDVHIGEMTVRETLAFSARCQGVG 244 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~ 244 (521)
+.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|++. ++.+||+||+.|+.... .
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~-~~~~tv~enl~~~~~~~--~ 94 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAW-IQNDSLRENILFGCQLE--E 94 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCC-CCSEEHHHHHHTTSCCC--T
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCc-CCCcCHHHHhhCccccC--H
Confidence 4699999999999999999999999999999999999987532 2478999865 56899999998853210 0
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCccCCCCChHHHHHHHHHH
Q 044321 245 SRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDEILRGISGGQRKRVTTGE 323 (521)
Q Consensus 245 ~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~~r~LSGGqrQRvaIAr 323 (521)
.. .....+ ...+++.+++. ...++.++ +.+..|||||||||+|||
T Consensus 95 ~~---------------------~~~~~~------------~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGqkqRv~lAr 140 (237)
T 2cbz_A 95 PY---------------------YRSVIQ------------ACALLPDLEILPSGDRTEIG-EKGVNLSGGQKQRVSLAR 140 (237)
T ss_dssp TH---------------------HHHHHH------------HTTCHHHHTTSTTGGGSEES-TTSBCCCHHHHHHHHHHH
T ss_pred HH---------------------HHHHHH------------HHhhHHHHHhcccccccccc-CCCCCCCHHHHHHHHHHH
Confidence 00 000000 00012233332 22233343 356679999999999999
Q ss_pred HHcCCCcEEEEeCCChhhHHHHHHHHHHHHH---H-cCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 324 MLVGPAQALFMDEISNSTTFQIVNSLRQFIH---I-LEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 324 aLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~---~-~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
||+.+|++|||||||+++|......+.+++. . ..++++|+++|+...+ ..||+|++|++|++++.|+++++.
T Consensus 141 aL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 141 AVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYL-PQVDVIIVMSGGKISEMGSYQELL 216 (237)
T ss_dssp HHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTG-GGSSEEEEEETTEEEEEECHHHHH
T ss_pred HHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHH-HhCCEEEEEeCCEEEEeCCHHHHh
Confidence 9999999999999999999998888877662 2 1345666667777665 579999999999999999998875
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=3e-35 Score=324.50 Aligned_cols=231 Identities=19% Similarity=0.252 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCC--ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLP--TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSL 161 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~ 161 (521)
.++....++|+.++++.+++. +....+.+ ...++++||++.+..
T Consensus 308 ~~~~~~a~~ri~~~l~~~~~~---------~~~~~~~~~~~~~i~~~~v~~~y~~------------------------- 353 (582)
T 3b5x_A 308 FQRGMAACQTLFGLMDLETER---------DNGKYEAERVNGEVDVKDVTFTYQG------------------------- 353 (582)
T ss_pred HHHHHHHHHHHHHHHcCCCcC---------CCCCCCCCCCCCeEEEEEEEEEcCC-------------------------
Confidence 567778899999998876542 00011111 236899999998620
Q ss_pred ccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCc
Q 044321 162 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHD 222 (521)
Q Consensus 162 ~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d 222 (521)
+.+.+|+||||+|++||+++|+||||||||||+++|+|+++|+.+ ..+||+|++
T Consensus 354 -------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~ 426 (582)
T 3b5x_A 354 -------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNV 426 (582)
T ss_pred -------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCC
Confidence 113699999999999999999999999999999999999988632 137999988
Q ss_pred cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcC-------C
Q 044321 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILG-------L 295 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg-------L 295 (521)
.+++ .||+||+.++.. ... +.+ .++++++.+| +
T Consensus 427 ~l~~-~tv~eni~~~~~-~~~-----------------------~~~---------------~~~~~~~~~~l~~~~~~~ 466 (582)
T 3b5x_A 427 HLFN-DTIANNIAYAAE-GEY-----------------------TRE---------------QIEQAARQAHAMEFIENM 466 (582)
T ss_pred cccc-ccHHHHHhccCC-CCC-----------------------CHH---------------HHHHHHHHCCCHHHHHhC
Confidence 7775 599999988531 000 000 1122223333 4
Q ss_pred CccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhh
Q 044321 296 DVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDL 374 (521)
Q Consensus 296 ~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l 374 (521)
++..||.+|+ .+..|||||||||+|||||+.+|++|+|||||+++|....+.+.+.+.+. ++.++++++|+...+ ..
T Consensus 467 p~g~~t~~~~-~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~-~~ 544 (582)
T 3b5x_A 467 PQGLDTVIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTI-EQ 544 (582)
T ss_pred cccccchhcC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH-Hh
Confidence 4567888875 46789999999999999999999999999999999888777777666543 344555556766555 57
Q ss_pred cCeEEEEeCCEEEEecCHhHHHH
Q 044321 375 FDDIILISNGHIVYQGPREYVLE 397 (521)
Q Consensus 375 ~D~VivL~~G~iv~~G~~~~v~~ 397 (521)
||+|++|++|++++.|+++++.+
T Consensus 545 ~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 545 ADEILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred CCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999998853
No 39
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.8e-35 Score=327.14 Aligned_cols=234 Identities=20% Similarity=0.273 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCC---Ccee-EEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhh
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISL---PTIE-VRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLN 159 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~-v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~ 159 (521)
.++...+++|+.++++.+++. . +..+... +..+ ++++||++.+..
T Consensus 305 ~~~~~~s~~ri~~~l~~~~~~-----~---~~~~~~~~~~~~~~~i~~~~v~~~y~~----------------------- 353 (595)
T 2yl4_A 305 LMKGLGAGGRLWELLEREPKL-----P---FNEGVILNEKSFQGALEFKNVHFAYPA----------------------- 353 (595)
T ss_dssp HHHHHHHHHHHHHHHTCCCSS-----C---SSCSBCCCTTTCCCCEEEEEEEEECSS-----------------------
T ss_pred HHHHHHHHHHHHHHHcCCCcc-----C---CCCCCCCCcCCCCCeEEEEEEEEEeCC-----------------------
Confidence 456677889999888765531 0 0111111 1335 999999998620
Q ss_pred hcccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecC
Q 044321 160 SLNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQ 220 (521)
Q Consensus 160 ~~~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q 220 (521)
..+..+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+||+|
T Consensus 354 --------~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q 425 (595)
T 2yl4_A 354 --------RPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQ 425 (595)
T ss_dssp --------CTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECS
T ss_pred --------CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEcc
Confidence 1124699999999999999999999999999999999999988621 1379999
Q ss_pred CccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcC------
Q 044321 221 HDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILG------ 294 (521)
Q Consensus 221 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg------ 294 (521)
++.+++ .||+||+.|+..... ..+.+ .++++++.+|
T Consensus 426 ~~~l~~-~tv~eni~~~~~~~~----------------------~~~~~---------------~~~~~~~~~~l~~~~~ 467 (595)
T 2yl4_A 426 EPILFS-CSIAENIAYGADDPS----------------------SVTAE---------------EIQRVAEVANAVAFIR 467 (595)
T ss_dssp SCCCCS-SBHHHHHHTTSSSTT----------------------TSCHH---------------HHHHHHHHTTCHHHHH
T ss_pred CCcccC-CCHHHHHhhcCCCcc----------------------ccCHH---------------HHHHHHHHcCCHHHHH
Confidence 887775 699999998632100 00001 1223334443
Q ss_pred -CCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHH
Q 044321 295 -LDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETY 372 (521)
Q Consensus 295 -L~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~ 372 (521)
+++..||.+|+ .+..|||||||||+|||||+.+|++|||||||+++|....+.+.+.+.+. .+.++++++|+...+
T Consensus 468 ~l~~g~~~~~~~-~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~- 545 (595)
T 2yl4_A 468 NFPQGFNTVVGE-KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTI- 545 (595)
T ss_dssp TSSSGGGCBCSS-SSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHH-
T ss_pred hCcccccccccC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-
Confidence 45678888876 46789999999999999999999999999999998887777776665543 344555567776655
Q ss_pred hhcCeEEEEeCCEEEEecCHhHHH
Q 044321 373 DLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 373 ~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
..||+|++|++|++++.|+++++.
T Consensus 546 ~~~d~i~~l~~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 546 KNANMVAVLDQGKITEYGKHEELL 569 (595)
T ss_dssp HHSSEEEEEETTEEEEEECSCC--
T ss_pred HcCCEEEEEECCEEEEECCHHHHH
Confidence 569999999999999999998874
No 40
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-35 Score=328.73 Aligned_cols=237 Identities=23% Similarity=0.299 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCC--CceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISL--PTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSL 161 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~ 161 (521)
.++...+++|+.++++.+++. + ...+.+. ...+++|+||++.+.
T Consensus 320 ~~~~~~s~~ri~~~l~~~~~~------~--~~~~~~~~~~~~~i~~~~v~~~y~-------------------------- 365 (598)
T 3qf4_B 320 IQMALASAERIFEILDLEEEK------D--DPDAVELREVRGEIEFKNVWFSYD-------------------------- 365 (598)
T ss_dssp HHHHHHHHHHHHHHTTSCCCC------C--CSSCCCCCSCCCCEEEEEEECCSS--------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCCC------C--CCCCCCCCCCCCeEEEEEEEEECC--------------------------
Confidence 566778899999998776541 0 0111122 234688999887641
Q ss_pred ccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCc
Q 044321 162 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHD 222 (521)
Q Consensus 162 ~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d 222 (521)
+...+|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+||+|++
T Consensus 366 -------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~ 438 (598)
T 3qf4_B 366 -------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDT 438 (598)
T ss_dssp -------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTC
T ss_pred -------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCC
Confidence 223699999999999999999999999999999999999988631 138999987
Q ss_pred cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccc
Q 044321 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTM 302 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 302 (521)
.++ ..||+||+.++.... +.+...++....+ .+..++ .+++..+|.
T Consensus 439 ~lf-~~tv~eni~~~~~~~-------------------------~~~~~~~~~~~~~------~~~~~~--~~~~g~~t~ 484 (598)
T 3qf4_B 439 ILF-STTVKENLKYGNPGA-------------------------TDEEIKEAAKLTH------SDHFIK--HLPEGYETV 484 (598)
T ss_dssp CCC-SSBHHHHHHSSSTTC-------------------------CTTHHHHHTTTTT------CHHHHH--TSTTGGGCB
T ss_pred ccc-cccHHHHHhcCCCCC-------------------------CHHHHHHHHHHhC------CHHHHH--hccccccch
Confidence 766 569999998752100 0011111111000 111222 356678888
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
+|+ .+..|||||||||+|||||+.+|++|||||||+++|....+.+.+.+.+. .+.++++++|+...+. .||+|++|
T Consensus 485 ~~~-~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~-~~d~i~~l 562 (598)
T 3qf4_B 485 LTD-NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIK-NADLIIVL 562 (598)
T ss_dssp CHH-HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHH-HCSEEEEE
T ss_pred hcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEE
Confidence 875 55679999999999999999999999999999998877666666555433 3445555667766654 59999999
Q ss_pred eCCEEEEecCHhHHHH
Q 044321 382 SNGHIVYQGPREYVLE 397 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~~ 397 (521)
++|++++.|+++++.+
T Consensus 563 ~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 563 RDGEIVEMGKHDELIQ 578 (598)
T ss_dssp CSSSEEECSCHHHHHH
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999999864
No 41
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1e-34 Score=320.30 Aligned_cols=231 Identities=18% Similarity=0.261 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCC--ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLP--TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSL 161 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~ 161 (521)
.++....++|+.++++.+++. +..+.+.+ ...++++|+++.+.
T Consensus 308 ~~~~~~a~~ri~~~l~~~~~~---------~~~~~~~~~~~~~i~~~~v~~~y~-------------------------- 352 (582)
T 3b60_A 308 FQRGMAACQTLFAILDSEQEK---------DEGKRVIDRATGDLEFRNVTFTYP-------------------------- 352 (582)
T ss_dssp HHHHHHHHHHHHHHHHSCCSC---------CCCCBCCSCCCCCEEEEEEEECSS--------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCCc---------cCCCCCCCCCCCcEEEEEEEEEcC--------------------------
Confidence 566778888988888765541 01111222 23588999888741
Q ss_pred ccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCc
Q 044321 162 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHD 222 (521)
Q Consensus 162 ~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d 222 (521)
.+.+.+|+||||+|++||+++|+||||||||||+++|+|+++|+.+ ..+||+|++
T Consensus 353 ------~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~ 426 (582)
T 3b60_A 353 ------GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNV 426 (582)
T ss_dssp ------SSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSC
T ss_pred ------CCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCC
Confidence 0114699999999999999999999999999999999999988621 137999988
Q ss_pred cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcC-------C
Q 044321 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILG-------L 295 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lg-------L 295 (521)
.+++ .||+||+.|+.. ... +.+. +.++++.+| +
T Consensus 427 ~l~~-~tv~eni~~~~~-~~~-----------------------~~~~---------------~~~~l~~~~l~~~~~~~ 466 (582)
T 3b60_A 427 HLFN-DTVANNIAYART-EEY-----------------------SREQ---------------IEEAARMAYAMDFINKM 466 (582)
T ss_dssp CCCS-SBHHHHHHTTTT-SCC-----------------------CHHH---------------HHHHHHTTTCHHHHHHS
T ss_pred cCCC-CCHHHHHhccCC-CCC-----------------------CHHH---------------HHHHHHHcCCHHHHHhc
Confidence 7776 599999998531 000 0011 112222222 4
Q ss_pred CccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhh
Q 044321 296 DVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDL 374 (521)
Q Consensus 296 ~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l 374 (521)
++..||.+|+ .+..|||||||||+|||||+.+|++|||||||+++|....+.+.+.+.+. ++.++++++|+...+ ..
T Consensus 467 p~g~~~~~~~-~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~-~~ 544 (582)
T 3b60_A 467 DNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTI-EQ 544 (582)
T ss_dssp TTGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGT-TT
T ss_pred cccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHH-Hh
Confidence 5567888875 56789999999999999999999999999999998887766666655443 344555566776655 57
Q ss_pred cCeEEEEeCCEEEEecCHhHHHH
Q 044321 375 FDDIILISNGHIVYQGPREYVLE 397 (521)
Q Consensus 375 ~D~VivL~~G~iv~~G~~~~v~~ 397 (521)
||+|++|++|++++.|+++++.+
T Consensus 545 ~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 545 ADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp CSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999998854
No 42
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.7e-35 Score=350.97 Aligned_cols=243 Identities=21% Similarity=0.261 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCC-ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhcc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLP-TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSLN 162 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~ 162 (521)
.+.....++|+.++++..++. .+. ...+...| ..+|+|+||+|.|.
T Consensus 1041 ~~~~~~a~~ri~~~l~~~~~~-----~~~-~~~~~~~~~~g~I~f~nVsf~Y~--------------------------- 1087 (1321)
T 4f4c_A 1041 YAKATFAGGIIFGMLRKISKI-----DSL-SLAGEKKKLYGKVIFKNVRFAYP--------------------------- 1087 (1321)
T ss_dssp HHHHHHHHHHHHHHHHCCCSS-----CTT-CCCSBCCCCCCCEEEEEEEECCT---------------------------
T ss_pred HHHHHHHHHHHHHHhhCcccC-----CCc-cCCCCCCCCCCeEEEEEEEEeCC---------------------------
Confidence 566778899999998876651 110 11111122 34799999999862
Q ss_pred cccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCcc
Q 044321 163 ILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHDV 223 (521)
Q Consensus 163 ~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d~ 223 (521)
.....+||+||||+|+|||.+||+||||||||||+++|.|+++|..+ ..++|+|++.
T Consensus 1088 ----~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~ 1163 (1321)
T 4f4c_A 1088 ----ERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPT 1163 (1321)
T ss_dssp ----TSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCC
T ss_pred ----CCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCE
Confidence 11234699999999999999999999999999999999999998632 1289999876
Q ss_pred ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccc
Q 044321 224 HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMV 303 (521)
Q Consensus 224 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~v 303 (521)
+| ..|++|||.|+..- ++.+.+.+.+++...+ ..+.+ -.|++.+||.|
T Consensus 1164 LF-~gTIreNI~~gld~-----------------------~~~sd~ei~~Al~~a~-----l~~~I---~~Lp~GldT~v 1211 (1321)
T 4f4c_A 1164 LF-DCSIAENIIYGLDP-----------------------SSVTMAQVEEAARLAN-----IHNFI---AELPEGFETRV 1211 (1321)
T ss_dssp CC-SEEHHHHHSSSSCT-----------------------TTSCHHHHHHHHHHTT-----CHHHH---HTSTTTTCSEE
T ss_pred ee-CccHHHHHhccCCC-----------------------CCCCHHHHHHHHHHhC-----ChHHH---HcCcCCCCCEe
Confidence 55 57999999876311 1112223333322221 11222 25788999999
Q ss_pred cCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 304 GDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 304 g~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
|+ .+..||||||||++|||||+++|+||||||||+++|.+.-+.+.+.+++. ++.|+|+++|.. .+...||+|+||+
T Consensus 1212 ge-~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRL-sTi~~aD~I~Vld 1289 (1321)
T 4f4c_A 1212 GD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRL-NTVMNADCIAVVS 1289 (1321)
T ss_dssp TT-TSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSS-STTTTCSEEEEES
T ss_pred cC-CCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCH-HHHHhCCEEEEEE
Confidence 97 45679999999999999999999999999999998887777777766543 344444455654 4566799999999
Q ss_pred CCEEEEecCHhHHHH
Q 044321 383 NGHIVYQGPREYVLE 397 (521)
Q Consensus 383 ~G~iv~~G~~~~v~~ 397 (521)
+|+|+++|+|+++++
T Consensus 1290 ~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1290 NGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp SSSEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999999974
No 43
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=7.3e-35 Score=347.29 Aligned_cols=238 Identities=20% Similarity=0.246 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCCC--ceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISLP--TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSL 161 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~ 161 (521)
.++...+++|+.++++..++. ... ...+...+ ..+|+|+|++|.|..
T Consensus 379 ~~~~~~s~~ri~~~l~~~~~~-----~~~-~~~~~~~~~~~g~I~~~nvsF~Y~~------------------------- 427 (1321)
T 4f4c_A 379 LGTAQGAASGIYEVLDRKPVI-----DSS-SKAGRKDMKIKGDITVENVHFTYPS------------------------- 427 (1321)
T ss_dssp HHHHHHHHHHHHHHTTTSCCS-----SCS-SSCCCCCCCCCCCEEEEEEEECCSS-------------------------
T ss_pred HHHHHHHHHHHHHHHcCCccc-----ccc-ccccccCCCCCCcEEEEEeeeeCCC-------------------------
Confidence 567788899999998876541 111 11222222 347999999998631
Q ss_pred ccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCc
Q 044321 162 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHD 222 (521)
Q Consensus 162 ~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d 222 (521)
..+.++|+||||+|++|++++|+||||||||||+++|.|+++|..+ ..+||+|++
T Consensus 428 ------~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~ 501 (1321)
T 4f4c_A 428 ------RPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEP 501 (1321)
T ss_dssp ------STTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSC
T ss_pred ------CCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcc
Confidence 1234799999999999999999999999999999999999998631 138999987
Q ss_pred cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccc
Q 044321 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTM 302 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 302 (521)
.+ ++.|++|||.|+. ++.+.+.+.+++...+ ..+.+. .|++..||.
T Consensus 502 ~L-f~~TI~eNI~~g~-------------------------~~~~~~~v~~a~~~a~-----l~~~i~---~lp~G~~T~ 547 (1321)
T 4f4c_A 502 AL-FNCTIEENISLGK-------------------------EGITREEMVAACKMAN-----AEKFIK---TLPNGYNTL 547 (1321)
T ss_dssp CC-CSEEHHHHHHTTC-------------------------TTCCHHHHHHHHHHTT-----CHHHHH---HSTTTTSSE
T ss_pred ee-eCCchhHHHhhhc-------------------------ccchHHHHHHHHHHcc-----chhHHH---cCCCCCccE
Confidence 55 5689999999863 1222333333333221 112222 378999999
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHH----HHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeE
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQ----IVNSLRQFIHILEGTILISLLQPAPETYDLFDDI 378 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~----i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~V 378 (521)
||+. +..||||||||++|||||+.+|+||||||||+++|.+ +.+.|.++. .++|+|+++|+ . .+...||+|
T Consensus 548 vGe~-G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~iiiaHr-l-s~i~~aD~I 622 (1321)
T 4f4c_A 548 VGDR-GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA--KGRTTIIIAHR-L-STIRNADLI 622 (1321)
T ss_dssp ESSS-SCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--TTSEEEEECSC-T-TTTTTCSEE
T ss_pred ecCC-CCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh--CCCEEEEEccc-H-HHHHhCCEE
Confidence 9974 4579999999999999999999999999999976654 444454443 25666665544 3 466789999
Q ss_pred EEEeCCEEEEecCHhHHHH
Q 044321 379 ILISNGHIVYQGPREYVLE 397 (521)
Q Consensus 379 ivL~~G~iv~~G~~~~v~~ 397 (521)
++|++|+|+++|+++++++
T Consensus 623 ivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 623 ISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp EEEETTEEEEEECHHHHHT
T ss_pred EEeeCCeeeccCCHHHHHH
Confidence 9999999999999999863
No 44
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.6e-35 Score=287.18 Aligned_cols=172 Identities=19% Similarity=0.169 Sum_probs=131.8
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------ceeeecCCccccCCCCHHHHHHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------NRCDISQHDVHIGEMTVRETLAFS 237 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------~~~~v~q~d~~~~~lTV~E~l~f~ 237 (521)
.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++.+||+||+.|+
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~ 102 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAV 102 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHH
Confidence 699999999999999999999999999999999999987521 137899998888899999999986
Q ss_pred HHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHH
Q 044321 238 ARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRK 317 (521)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQ 317 (521)
....+. . .+ ...++++++.+||.+. +..+. .|||||||
T Consensus 103 ~~~~~~-~----------------------------------~~-~~~~~~~l~~~gl~~~-~~~~~-----~LSgGqkq 140 (214)
T 1sgw_A 103 ASLYGV-K----------------------------------VN-KNEIMDALESVEVLDL-KKKLG-----ELSQGTIR 140 (214)
T ss_dssp HHHTTC-C----------------------------------CC-HHHHHHHHHHTTCCCT-TSBGG-----GSCHHHHH
T ss_pred HHhcCC-c----------------------------------hH-HHHHHHHHHHcCCCcC-CCChh-----hCCHHHHH
Confidence 432110 0 00 1235668899999876 65554 59999999
Q ss_pred HHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 318 RVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 318 RvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
||+||+||+.+|++|||||||+++|......+.+++.+. .+++|++++|+..++..+||+|+++ .|+|
T Consensus 141 rv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 141 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 999999999999999999999987765544444443322 2345556678888888888887755 3444
No 45
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1e-33 Score=286.62 Aligned_cols=187 Identities=19% Similarity=0.242 Sum_probs=136.6
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------ceeeecCCccccCCCCHHHHHHHHHHhccCch
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------NRCDISQHDVHIGEMTVRETLAFSARCQGVGS 245 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~ 245 (521)
.+|+||||+|++|++++|+|||||||||||++|+|+++|+.+ ..+|++|+..+++ .||+||+. +... .
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~-~tv~enl~-~~~~---~- 125 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMP-GTIKENII-GVSY---D- 125 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCS-SBHHHHHH-TTCC---C-
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCc-ccHHHHhh-Cccc---c-
Confidence 589999999999999999999999999999999999987521 2479999887776 59999997 3210 0
Q ss_pred hhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHH
Q 044321 246 RYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEML 325 (521)
Q Consensus 246 ~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraL 325 (521)
.. .... ..+.. .....++. +....++.++. .+..|||||||||+|||||
T Consensus 126 ~~----~~~~---------------~~~~~---------~l~~~l~~--~~~~~~~~~~~-~~~~LSgGq~QRv~lAraL 174 (290)
T 2bbs_A 126 EY----RYRS---------------VIKAC---------QLEEDISK--FAEKDNIVLGE-GGITLSGGQRARISLARAV 174 (290)
T ss_dssp HH----HHHH---------------HHHHT---------TCHHHHHT--STTGGGCBC-----CCCCHHHHHHHHHHHHH
T ss_pred hH----HHHH---------------HHHHh---------ChHHHHHh--ccccccchhcC-ccCcCCHHHHHHHHHHHHH
Confidence 00 0000 00000 00112222 22233444442 4567999999999999999
Q ss_pred cCCCcEEEEeCCChhhHHHHHHHHHHHH-HHc-CCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHH
Q 044321 326 VGPAQALFMDEISNSTTFQIVNSLRQFI-HIL-EGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVL 396 (521)
Q Consensus 326 v~~P~iLlLDEPTs~~~~~i~~~L~~l~-~~~-~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~ 396 (521)
+.+|++|||||||+++|....+.+.+++ ... .+++||+++|+...+ ..||+|++|++|++++.|+++++.
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 175 YKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHL-KKADKILILHEGSSYFYGTFSELQ 246 (290)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHH-HHSSEEEEEETTEEEEEECHHHHH
T ss_pred HCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHH-HcCCEEEEEECCeEEEeCCHHHHh
Confidence 9999999999999999999988888752 222 345666677887666 469999999999999999998874
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.1e-33 Score=334.04 Aligned_cols=241 Identities=20% Similarity=0.239 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCC--CceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISL--PTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSL 161 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~ 161 (521)
.+.....++|+.++++..++. .. ....+..+ ...+|+|+|+++.+..
T Consensus 351 ~~~~~~a~~ri~~~l~~~~~~-----~~-~~~~~~~~~~~~g~i~~~~v~~~y~~------------------------- 399 (1284)
T 3g5u_A 351 FANARGAAYEVFKIIDNKPSI-----DS-FSKSGHKPDNIQGNLEFKNIHFSYPS------------------------- 399 (1284)
T ss_dssp HHHHHHHHHHHHHTTSCCCCC-----SS-CCSSCCCCTTCCCCEEEEEEEECCSS-------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCcC-----Cc-ccccCCCCCCCCCeEEEEEEEEEcCC-------------------------
Confidence 456667788888888765541 00 00111122 1347999999998621
Q ss_pred ccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCc
Q 044321 162 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHD 222 (521)
Q Consensus 162 ~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d 222 (521)
....++|+||||+|++|++++|+||||||||||+++|+|+++|+.+ ..+||+|++
T Consensus 400 ------~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~ 473 (1284)
T 3g5u_A 400 ------RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEP 473 (1284)
T ss_dssp ------TTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSC
T ss_pred ------CCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCC
Confidence 1224699999999999999999999999999999999999988631 138999998
Q ss_pred cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccc
Q 044321 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTM 302 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 302 (521)
.+++ .||+||+.|+... .+.+...++..... ....++ .|++..||.
T Consensus 474 ~l~~-~ti~eNi~~g~~~-------------------------~~~~~~~~~~~~~~------~~~~i~--~l~~g~~t~ 519 (1284)
T 3g5u_A 474 VLFA-TTIAENIRYGRED-------------------------VTMDEIEKAVKEAN------AYDFIM--KLPHQFDTL 519 (1284)
T ss_dssp CCCS-SCHHHHHHHHCSS-------------------------CCHHHHHHHHHHTT------CHHHHH--HSTTGGGCC
T ss_pred ccCC-ccHHHHHhcCCCC-------------------------CCHHHHHHHHHHhC------cHHHHH--hcccccccc
Confidence 7765 5999999987321 01111111111110 111222 367788999
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
+|+ .+.+|||||||||+|||||+.+|+||||||||+++|.+..+.+.+.+... .+.++|+++|+...+. .||+|++|
T Consensus 520 ~~~-~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~-~~d~i~vl 597 (1284)
T 3g5u_A 520 VGE-RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVR-NADVIAGF 597 (1284)
T ss_dssp CSS-SSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHT-TCSEEEEC
T ss_pred ccC-CCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEE
Confidence 986 55689999999999999999999999999999998887776666655432 3455566678777665 59999999
Q ss_pred eCCEEEEecCHhHHHH
Q 044321 382 SNGHIVYQGPREYVLE 397 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~~ 397 (521)
++|++++.|+++++++
T Consensus 598 ~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 598 DGGVIVEQGNHDELMR 613 (1284)
T ss_dssp SSSCCCCEECHHHHHH
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999999863
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.98 E-value=1.5e-32 Score=326.59 Aligned_cols=243 Identities=20% Similarity=0.278 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhhhhcCCCC--CceeEEeeeeEEEEEeecCCCCCCcchhhhhhHHHhhhhhc
Q 044321 84 QQERQRLVEKLVKVAEVYNEEFLLKLKNRIARVGISL--PTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIVEGFLNSL 161 (521)
Q Consensus 84 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~ 161 (521)
.+......+|+.++++..++. .. ....+... ....|+|+||++.|..
T Consensus 994 ~~~~~~a~~ri~~~l~~~~~~-----~~-~~~~~~~~~~~~g~i~~~~v~~~y~~------------------------- 1042 (1284)
T 3g5u_A 994 YAKATVSASHIIRIIEKTPEI-----DS-YSTQGLKPNMLEGNVQFSGVVFNYPT------------------------- 1042 (1284)
T ss_dssp STHHHHHHHHHHHHHHSCCSS-----SS-CCSSCCCTTTTSCCEEEEEEEBCCSC-------------------------
T ss_pred HHHHHHHHHHHHHHHcCCCcc-----cc-cccccccccCCCCcEEEEEEEEECCC-------------------------
Confidence 345677888998888766541 00 00111111 1346999999987621
Q ss_pred ccccCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------------------ceeeecCCc
Q 044321 162 NILPSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------------------NRCDISQHD 222 (521)
Q Consensus 162 ~~~~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------------------~~~~v~q~d 222 (521)
....++|+||||+|++||+++|+||||||||||+++|+|+++|+.+ ..+||+|++
T Consensus 1043 ------~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 1116 (1284)
T 3g5u_A 1043 ------RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEP 1116 (1284)
T ss_dssp ------GGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSC
T ss_pred ------CCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCC
Confidence 1123589999999999999999999999999999999999987521 238999987
Q ss_pred cccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccc
Q 044321 223 VHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTM 302 (521)
Q Consensus 223 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~ 302 (521)
.++ ..||+||+.++...... +.+...++.... ..... .-.+++.+||.
T Consensus 1117 ~l~-~~ti~eNi~~~~~~~~~-----------------------~~~~i~~~~~~~------~~~~~--i~~l~~gldt~ 1164 (1284)
T 3g5u_A 1117 ILF-DCSIAENIAYGDNSRVV-----------------------SYEEIVRAAKEA------NIHQF--IDSLPDKYNTR 1164 (1284)
T ss_dssp CCC-SSBHHHHHTCCCSSCCC-----------------------CHHHHHHHHHHH------TCHHH--HSSTTTGGGCB
T ss_pred ccc-cccHHHHHhccCCCCCC-----------------------CHHHHHHHHHHh------CcHHH--HHhCccccccc
Confidence 654 68999999875321111 111111111000 01111 12467889999
Q ss_pred ccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEE
Q 044321 303 VGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 303 vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
+|+ .+..|||||||||+|||||+.+|+||||||||+++|....+.+.+.+... ++.++++++|+...+ ..||+|++|
T Consensus 1165 vge-~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i-~~~dri~vl 1242 (1284)
T 3g5u_A 1165 VGD-KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTI-QNADLIVVI 1242 (1284)
T ss_dssp CST-TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGG-GSCSEEEEE
T ss_pred cCC-CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHH-HcCCEEEEE
Confidence 996 56689999999999999999999999999999998888777777766543 344555667777766 559999999
Q ss_pred eCCEEEEecCHhHHHH
Q 044321 382 SNGHIVYQGPREYVLE 397 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~~ 397 (521)
++|+|++.|+++++++
T Consensus 1243 ~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1243 QNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp ETBEEEEEECHHHHHH
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999999864
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=6e-31 Score=290.84 Aligned_cols=183 Identities=24% Similarity=0.191 Sum_probs=147.5
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------ceeeecCCccccCCCCHHHHHHHHHHhccCch
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------NRCDISQHDVHIGEMTVRETLAFSARCQGVGS 245 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~ 245 (521)
..|+++||+|++||+++|+|||||||||||++|+|++.|+.+ ..+|++|+....+.+||.|++.+....
T Consensus 370 ~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~----- 444 (607)
T 3bk7_A 370 FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSS----- 444 (607)
T ss_dssp CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHH-----
T ss_pred eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhcc-----
Confidence 368999999999999999999999999999999999887632 248999987777889998887653100
Q ss_pred hhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHH
Q 044321 246 RYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEML 325 (521)
Q Consensus 246 ~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraL 325 (521)
... ....++.+|+.+||.+..++.++ .|||||||||+||+||
T Consensus 445 ------~~~---------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~QRv~iAraL 486 (607)
T 3bk7_A 445 ------KLN---------------------------SNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATL 486 (607)
T ss_dssp ------HHH---------------------------CHHHHHHTHHHHTCTTTTTSBGG-----GCCHHHHHHHHHHHHH
T ss_pred ------CCC---------------------------HHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHH
Confidence 000 01234668899999888877765 4999999999999999
Q ss_pred cCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeC--CEEEEecCHhHHHH
Q 044321 326 VGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISN--GHIVYQGPREYVLE 397 (521)
Q Consensus 326 v~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~--G~iv~~G~~~~v~~ 397 (521)
+.+|++|||||||+++|......+.++++.+ .+.++|+++|+..++..+||+|++|++ |+++..|++++++.
T Consensus 487 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 487 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp TSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 9999999999999998887666555554432 355666678999999999999999986 88899999988765
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=5.8e-31 Score=287.56 Aligned_cols=183 Identities=23% Similarity=0.186 Sum_probs=146.1
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------ceeeecCCccccCCCCHHHHHHHHHHhccCch
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------NRCDISQHDVHIGEMTVRETLAFSARCQGVGS 245 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~ 245 (521)
..|+++||+|++||+++|+|||||||||||++|+|+++|..+ ..+|++|+....+.+||.|++.......
T Consensus 300 ~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~---- 375 (538)
T 1yqt_A 300 FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASK---- 375 (538)
T ss_dssp EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHH----
T ss_pred EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccC----
Confidence 368999999999999999999999999999999999887532 2479999877778899988775421000
Q ss_pred hhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHH
Q 044321 246 RYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEML 325 (521)
Q Consensus 246 ~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraL 325 (521)
.. ....++.+++.+||.+..++.++ .|||||||||+||++|
T Consensus 376 -------~~---------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~qrv~lAraL 416 (538)
T 1yqt_A 376 -------LN---------------------------SNFYKTELLKPLGIIDLYDREVN-----ELSGGELQRVAIAATL 416 (538)
T ss_dssp -------HT---------------------------CHHHHHHTTTTTTCGGGTTSBGG-----GCCHHHHHHHHHHHHH
T ss_pred -------CC---------------------------HHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHH
Confidence 00 01134567888999877777665 4999999999999999
Q ss_pred cCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeC--CEEEEecCHhHHHH
Q 044321 326 VGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISN--GHIVYQGPREYVLE 397 (521)
Q Consensus 326 v~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~--G~iv~~G~~~~v~~ 397 (521)
+.+|++|||||||+++|......+.+++.++ .+.+||+++|+..++..+||+|++|++ |+++..|+++++..
T Consensus 417 ~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 417 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp TSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 9999999999999998887666665554432 245566678999999999999999986 88999999988765
No 50
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4e-31 Score=291.99 Aligned_cols=183 Identities=23% Similarity=0.170 Sum_probs=145.0
Q ss_pred ceeeeeeEEEEeCC-----cEEEEEcCCCChHHHHHHHHhCCCCCCCC------ceeeecCCccccCCCCHHHHHHHHHH
Q 044321 171 LTILKDVSGIIRPG-----RMTLLLGPPGSVKTTLLLALAGKLDSSLK------NRCDISQHDVHIGEMTVRETLAFSAR 239 (521)
Q Consensus 171 ~~iL~dVS~~I~~G-----e~~~LlGpnGSGKSTLLk~LaG~l~~~~~------~~~~v~q~d~~~~~lTV~E~l~f~~~ 239 (521)
..+++|+||++.+| |+++|+|||||||||||++|+|+++|+.+ ..+|++|+.......||.+++.....
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~ 439 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIR 439 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCS
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhh
Confidence 45889999999999 78999999999999999999999988643 24788998666667899997643211
Q ss_pred hccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHH
Q 044321 240 CQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRV 319 (521)
Q Consensus 240 ~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRv 319 (521)
.... ....++.+++.+||.+..++.++ .|||||||||
T Consensus 440 --~~~~------------------------------------~~~~~~~~l~~l~l~~~~~~~~~-----~LSGGqkQRv 476 (608)
T 3j16_B 440 --GQFL------------------------------------NPQFQTDVVKPLRIDDIIDQEVQ-----HLSGGELQRV 476 (608)
T ss_dssp --STTT------------------------------------SHHHHHHTHHHHTSTTTSSSBSS-----SCCHHHHHHH
T ss_pred --cccc------------------------------------cHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHH
Confidence 0000 01134567889999988877665 5999999999
Q ss_pred HHHHHHcCCCcEEEEeCCChhhHHHHHHH----HHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeC--CEEEEecCHh
Q 044321 320 TTGEMLVGPAQALFMDEISNSTTFQIVNS----LRQFIHILEGTILISLLQPAPETYDLFDDIILISN--GHIVYQGPRE 393 (521)
Q Consensus 320 aIAraLv~~P~iLlLDEPTs~~~~~i~~~----L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~--G~iv~~G~~~ 393 (521)
+||+||+.+|++|||||||+++|...... |+++..+. +.+|++++|+.+++..+||+|++|++ |++++.|+++
T Consensus 477 ~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~-g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~ 555 (608)
T 3j16_B 477 AIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHN-KKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPE 555 (608)
T ss_dssp HHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHH-TCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCE
T ss_pred HHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChH
Confidence 99999999999999999999988755544 44443322 45566678999999999999999996 9999999998
Q ss_pred HHHH
Q 044321 394 YVLE 397 (521)
Q Consensus 394 ~v~~ 397 (521)
+++.
T Consensus 556 ~~~~ 559 (608)
T 3j16_B 556 SLLT 559 (608)
T ss_dssp EHHH
T ss_pred HHhh
Confidence 8864
No 51
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=6.9e-30 Score=292.62 Aligned_cols=181 Identities=18% Similarity=0.197 Sum_probs=147.6
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHh-CCCCC----CCCceeeecCCc-cccCCCCHHHHHHHHHHhccC
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALA-GKLDS----SLKNRCDISQHD-VHIGEMTVRETLAFSARCQGV 243 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~La-G~l~~----~~~~~~~v~q~d-~~~~~lTV~E~l~f~~~~~~~ 243 (521)
.+.+|+||||+|++|++++|+|||||||||||++|+ |.+.. .....+|++|+. ..++.+||.|++.+ ...+.
T Consensus 447 ~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~~~ 524 (986)
T 2iw3_A 447 AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFE--SGVGT 524 (986)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHT--TCSSC
T ss_pred CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHH--hhcCH
Confidence 347999999999999999999999999999999998 43311 111246787763 56788999999865 11000
Q ss_pred chhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC-ccccccccCccCCCCChHHHHHHHHH
Q 044321 244 GSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD-VCADTMVGDEILRGISGGQRKRVTTG 322 (521)
Q Consensus 244 ~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~-~~~dt~vg~~~~r~LSGGqrQRvaIA 322 (521)
...+..+|+.+||. +..++.++ .|||||||||+||
T Consensus 525 ---------------------------------------~~~v~~~L~~lgL~~~~~~~~~~-----~LSGGqkQRvaLA 560 (986)
T 2iw3_A 525 ---------------------------------------KEAIKDKLIEFGFTDEMIAMPIS-----ALSGGWKMKLALA 560 (986)
T ss_dssp ---------------------------------------HHHHHHHHHHTTCCHHHHHSBGG-----GCCHHHHHHHHHH
T ss_pred ---------------------------------------HHHHHHHHHHcCCChhhhcCCcc-----cCCHHHHHHHHHH
Confidence 11346688999995 56676665 4999999999999
Q ss_pred HHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEE-EecCHhHHHH
Q 044321 323 EMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIV-YQGPREYVLE 397 (521)
Q Consensus 323 raLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv-~~G~~~~v~~ 397 (521)
+||+.+|++|||||||+++|....+.|.+++.. .++++|+++|+...+..+||+|++|++|+++ +.|+++++..
T Consensus 561 rAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~-~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 561 RAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT-CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH-SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999999999999999999999999999988877 5667777889999999999999999999997 7899988764
No 52
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=3e-30 Score=281.70 Aligned_cols=183 Identities=17% Similarity=0.136 Sum_probs=141.3
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-------ceeeecCCccccCCCCHHHHHHHHHHhccCc
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-------NRCDISQHDVHIGEMTVRETLAFSARCQGVG 244 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-------~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~ 244 (521)
..|+++||+|++||+++|+||||||||||+++|+|+++|+.+ ..+|++|+....+.+||.+++.+..... .
T Consensus 282 ~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~- 359 (538)
T 3ozx_A 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDA-L- 359 (538)
T ss_dssp EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSST-T-
T ss_pred EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhc-c-
Confidence 357778889999999999999999999999999999988632 2378888766666899999987631100 0
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHH
Q 044321 245 SRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEM 324 (521)
Q Consensus 245 ~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAra 324 (521)
.. ....++.+++.+||.+..++.++ .|||||||||+||||
T Consensus 360 ------------------~~-----------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~QRv~iAra 399 (538)
T 3ozx_A 360 ------------------ST-----------------SSWFFEEVTKRLNLHRLLESNVN-----DLSGGELQKLYIAAT 399 (538)
T ss_dssp ------------------CT-----------------TSHHHHHTTTTTTGGGCTTSBGG-----GCCHHHHHHHHHHHH
T ss_pred ------------------ch-----------------hHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHH
Confidence 00 01134567888999888877765 499999999999999
Q ss_pred HcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEEEEeC--CEEEEecCHhHHH
Q 044321 325 LVGPAQALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDIILISN--GHIVYQGPREYVL 396 (521)
Q Consensus 325 Lv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~VivL~~--G~iv~~G~~~~v~ 396 (521)
|+.+|++|||||||+++|......+.++++++ .+++|++++|+..++..+||+|++|++ |.+...+++..+.
T Consensus 400 L~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 400 LAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 99999999999999988876555544444332 356667778999999999999999986 6667777765543
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.96 E-value=3e-29 Score=274.08 Aligned_cols=191 Identities=19% Similarity=0.216 Sum_probs=121.4
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCcc--ccCCCCHHHHHH-HHHHhccC---ch
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDV--HIGEMTVRETLA-FSARCQGV---GS 245 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~--~~~~lTV~E~l~-f~~~~~~~---~~ 245 (521)
.+|+||| +|++||+++|+||||||||||||+|+|++.|+.+. ........ .+....+..... .......+ .+
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q 113 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG-DNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQ 113 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT-TCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECS
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc-cCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhh
Confidence 4899999 99999999999999999999999999999876422 00000000 011111111000 00000000 00
Q ss_pred hhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHH
Q 044321 246 RYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEML 325 (521)
Q Consensus 246 ~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraL 325 (521)
........ .. ......... .+....++++|+.+||.+..++.++ .|||||||||+||+||
T Consensus 114 ~~~~~~~~---------~~-~~v~e~~~~-----~~~~~~~~~~l~~lgl~~~~~~~~~-----~LSgGekQRv~iAraL 173 (538)
T 1yqt_A 114 YVDLIPKA---------VK-GKVIELLKK-----ADETGKLEEVVKALELENVLEREIQ-----HLSGGELQRVAIAAAL 173 (538)
T ss_dssp CGGGSGGG---------CC-SBHHHHHHH-----HCSSSCHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHHHH
T ss_pred hhhhcchh---------hh-ccHHHHHhh-----hhHHHHHHHHHHHcCCChhhhCChh-----hCCHHHHHHHHHHHHH
Confidence 00000000 00 011111100 1112356789999999888777765 4999999999999999
Q ss_pred cCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 326 VGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 326 v~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
+.+|++|||||||+++|......+.++++.+ .+++||+++|+..++..+||+|++|++|
T Consensus 174 ~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 174 LRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 9999999999999999887555444444322 3556667789999999999999999864
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.96 E-value=2.1e-29 Score=282.25 Aligned_cols=195 Identities=23% Similarity=0.240 Sum_probs=117.6
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHH---------------------HHHhCCCCCCCC------ce-------
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLL---------------------LALAGKLDSSLK------NR------- 215 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLL---------------------k~LaG~l~~~~~------~~------- 215 (521)
..++|+||||+|++|++++|+||||||||||+ ++++|+..|+.+ ..
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 34689999999999999999999999999998 777777666521 00
Q ss_pred ---------eeecCCcc-------------------ccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCC
Q 044321 216 ---------CDISQHDV-------------------HIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPD 267 (521)
Q Consensus 216 ---------~~v~q~d~-------------------~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~ 267 (521)
++++|... .++.+||.||+.+....... .... .
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-----------~~~~--------~ 170 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-----------EKEA--------Q 170 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC-------------------------------------
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccc-----------hhhh--------H
Confidence 22333211 12346677776653211000 0000 0
Q ss_pred hHHHHHHHhhhchhhhhHHHHHHHHcCCCcc-ccccccCccCCCCChHHHHHHHHHHHHcCCCc--EEEEeCCChhhHHH
Q 044321 268 IDVFMKAAATEGQEVSVITDYILKILGLDVC-ADTMVGDEILRGISGGQRKRVTTGEMLVGPAQ--ALFMDEISNSTTFQ 344 (521)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~-~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~--iLlLDEPTs~~~~~ 344 (521)
. ......+.... ..+++.+||.+. .++.++ .|||||||||+|||||+.+|+ +|||||||+++|..
T Consensus 171 ~------~~~~~~~~~~~-~~~l~~~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~ 238 (670)
T 3ux8_A 171 I------ARLILREIRDR-LGFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQR 238 (670)
T ss_dssp --------------CHHH-HHHHHHTTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGG
T ss_pred H------HHHHHHHHHHH-HHHHHHcCCchhhhcCCcc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHH
Confidence 0 00000001111 235888999764 566665 499999999999999999998 99999999987765
Q ss_pred HHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEE------eCCEEEEecCHhHHH
Q 044321 345 IVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILI------SNGHIVYQGPREYVL 396 (521)
Q Consensus 345 i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL------~~G~iv~~G~~~~v~ 396 (521)
....|.++++.+ .+.+||+++|+...+ ..||+|++| ++|++++.|+++++.
T Consensus 239 ~~~~l~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 239 DNDRLIATLKSMRDLGNTLIVVEHDEDTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GHHHHHHHHHHHHHTTCEEEEECCCHHHH-HHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 554444444322 355666678888754 569999999 899999999998875
No 55
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.96 E-value=6.6e-29 Score=274.52 Aligned_cols=191 Identities=21% Similarity=0.239 Sum_probs=122.1
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCcc--ccCCCCHHHHHH-HHHHhccC---ch
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDV--HIGEMTVRETLA-FSARCQGV---GS 245 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~--~~~~lTV~E~l~-f~~~~~~~---~~ 245 (521)
.+|+||| +|++||+++|+|||||||||||++|+|++.|+.+. ........ .+....+..... .......+ .+
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~-~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q 183 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE-DNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQ 183 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT-TCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECS
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc-cccccchhhheeCCEehhhhhhhhhhhhcceEEeec
Confidence 4899999 99999999999999999999999999999886432 00000000 111111111000 00000000 00
Q ss_pred hhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHH
Q 044321 246 RYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEML 325 (521)
Q Consensus 246 ~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraL 325 (521)
....... ... ......... .+....++++|+.+||.+..++.+++ |||||||||+||+||
T Consensus 184 ~~~~~~~---------~~~-~tv~e~l~~-----~~~~~~~~~~L~~lgL~~~~~~~~~~-----LSGGekQRvaIAraL 243 (607)
T 3bk7_A 184 YVDLLPK---------AVK-GKVRELLKK-----VDEVGKFEEVVKELELENVLDRELHQ-----LSGGELQRVAIAAAL 243 (607)
T ss_dssp CGGGGGG---------TCC-SBHHHHHHH-----TCCSSCHHHHHHHTTCTTGGGSBGGG-----CCHHHHHHHHHHHHH
T ss_pred hhhhchh---------hcc-ccHHHHhhh-----hHHHHHHHHHHHHcCCCchhCCChhh-----CCHHHHHHHHHHHHH
Confidence 0000000 000 011111100 11123567899999999888877764 999999999999999
Q ss_pred cCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 326 VGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 326 v~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
+.+|++|||||||+++|......+.++++.+ .+++||+++|+...+..+||+|++|+++
T Consensus 244 ~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 244 LRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 9999999999999998887555544444332 3566677788998899999999999865
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.95 E-value=9.2e-29 Score=283.34 Aligned_cols=213 Identities=19% Similarity=0.248 Sum_probs=143.4
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------ceeeecCCccc----cCCCCHHHHHHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------NRCDISQHDVH----IGEMTVRETLAFSA 238 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------~~~~v~q~d~~----~~~lTV~E~l~f~~ 238 (521)
+.+|+||||+|++|++++|+||||||||||||+|+|++.|+.+ ..+|++|+..+ ....|+.+++.+..
T Consensus 686 ~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~ 765 (986)
T 2iw3_A 686 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRF 765 (986)
T ss_dssp SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEECHHHHHHGGGCTTSCHHHHHHHHT
T ss_pred ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEeeccchhhhhhcccccCHHHHHHHHh
Confidence 5799999999999999999999999999999999999987631 12577776421 13478999887643
Q ss_pred Hhcc-----------Cc--h------------------------------hhH--------------HHHHHHHHHHhcC
Q 044321 239 RCQG-----------VG--S------------------------------RYE--------------MLAELTRREKAAG 261 (521)
Q Consensus 239 ~~~~-----------~~--~------------------------------~~~--------------~~~~l~~~e~~~~ 261 (521)
.... .. . .++ .+..++..+..
T Consensus 766 q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~-- 843 (986)
T 2iw3_A 766 QTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNA-- 843 (986)
T ss_dssp TTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCE--
T ss_pred hccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhhcccccccccchhhhh--
Confidence 2100 00 0 000 00000000000
Q ss_pred CCCCCCh-HHHHHH---------H--hhhchhhhhHHHHHHHHcCCCcc--ccccccCccCCCCChHHHHHHHHHHHHcC
Q 044321 262 IKPDPDI-DVFMKA---------A--ATEGQEVSVITDYILKILGLDVC--ADTMVGDEILRGISGGQRKRVTTGEMLVG 327 (521)
Q Consensus 262 i~~~~~~-~~~~~~---------~--~~~~~~~~~~~~~iL~~lgL~~~--~dt~vg~~~~r~LSGGqrQRvaIAraLv~ 327 (521)
..+.... ..+.+. . ..........++.+|+.+||... .+..++ +|||||||||+||++|+.
T Consensus 844 ~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~-----~LSGGQkQRVaLArAL~~ 918 (986)
T 2iw3_A 844 WIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIR-----GLSGGQKVKLVLAAGTWQ 918 (986)
T ss_dssp EEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGG-----GCCHHHHHHHHHHHHHTT
T ss_pred hhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCcc-----ccCHHHHHHHHHHHHHHh
Confidence 0000000 000000 0 00011223456789999999752 455554 599999999999999999
Q ss_pred CCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecC
Q 044321 328 PAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGP 391 (521)
Q Consensus 328 ~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~ 391 (521)
+|++|||||||+++|......+.+.+.+.++ +||+++|+.+.+..+||+|++|++|+++..|+
T Consensus 919 ~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~-tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 919 RPHLIVLDEPTNYLDRDSLGALSKALKEFEG-GVIIITHSAEFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp CCSEEEEECGGGTCCHHHHHHHHHHHHSCSS-EEEEECSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHhCC-EEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999988877665 56667888888999999999999999988774
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.95 E-value=5.2e-28 Score=270.93 Aligned_cols=105 Identities=23% Similarity=0.246 Sum_probs=81.9
Q ss_pred HHHHHHHcCCCc-cccccccCccCCCCChHHHHHHHHHHHHcCCC---cEEEEeCCChhhHHHHHHHHHHHHHHc--CCe
Q 044321 286 TDYILKILGLDV-CADTMVGDEILRGISGGQRKRVTTGEMLVGPA---QALFMDEISNSTTFQIVNSLRQFIHIL--EGT 359 (521)
Q Consensus 286 ~~~iL~~lgL~~-~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P---~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t 359 (521)
..+.+..+||.. ..+..+ ..|||||||||+|||||+.+| ++|||||||+++|......+.++++++ .+.
T Consensus 523 ~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~ 597 (670)
T 3ux8_A 523 KLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD 597 (670)
T ss_dssp HHHHHHHTTCTTSBTTCCG-----GGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCchhhccCCc-----hhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC
Confidence 345678889864 345444 459999999999999999876 599999999998776655555554332 355
Q ss_pred EEEEEecChhHHHhhcCeEEEE------eCCEEEEecCHhHHH
Q 044321 360 ILISLLQPAPETYDLFDDIILI------SNGHIVYQGPREYVL 396 (521)
Q Consensus 360 ~ii~i~h~~~~~~~l~D~VivL------~~G~iv~~G~~~~v~ 396 (521)
+||+++|+...+ ..||+|++| ++|+|++.|+++++.
T Consensus 598 tvi~vtHd~~~~-~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 598 TVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp EEEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred EEEEEeCCHHHH-HhCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence 666678888765 679999999 899999999999984
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.8e-27 Score=261.35 Aligned_cols=201 Identities=22% Similarity=0.223 Sum_probs=128.8
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhH
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYE 248 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~ 248 (521)
.....|++++ .+++|++++|+||||||||||||+|+|++.|+.+. +... ....+.+.+ ..+... ..
T Consensus 89 ~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~---i~~~------~~~~~~~~~---~~g~~~-~~ 154 (608)
T 3j16_B 89 ANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR---FDDP------PEWQEIIKY---FRGSEL-QN 154 (608)
T ss_dssp TTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT---TCCS------SCHHHHHHH---TTTSTH-HH
T ss_pred CCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCce---Eecc------cchhhhhhe---ecChhh-hh
Confidence 3334677777 68999999999999999999999999999886432 1000 011111110 000000 00
Q ss_pred HHHHHHHHHHhcCCCCCC----------ChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHH
Q 044321 249 MLAELTRREKAAGIKPDP----------DIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKR 318 (521)
Q Consensus 249 ~~~~l~~~e~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQR 318 (521)
...............+.. ...................++++++.+||.+..++.++ .||||||||
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGe~Qr 229 (608)
T 3j16_B 155 YFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIE-----KLSGGELQR 229 (608)
T ss_dssp HHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTT-----TCCHHHHHH
T ss_pred hhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChH-----HCCHHHHHH
Confidence 000000000000000000 00001111111112233567889999999988887775 499999999
Q ss_pred HHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeEEEEeCCEEEE
Q 044321 319 VTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDIILISNGHIVY 388 (521)
Q Consensus 319 vaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~ 388 (521)
|+||+||+.+|++|||||||+++|......+.++++.+ .+.+||+++|+..++..+||+|++|++|..+|
T Consensus 230 v~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 230 FAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp HHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTTTE
T ss_pred HHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcccc
Confidence 99999999999999999999999988777777766554 35567778899999999999999999876544
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.94 E-value=3.8e-27 Score=257.17 Aligned_cols=98 Identities=17% Similarity=0.116 Sum_probs=83.2
Q ss_pred hHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEE
Q 044321 284 VITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILI 362 (521)
Q Consensus 284 ~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii 362 (521)
..++++++.+||.+..++.+++ |||||||||+||+||+.+|++|||||||+++|......+.+++.++ .+.+||
T Consensus 117 ~~~~~~l~~l~l~~~~~~~~~~-----LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii 191 (538)
T 3ozx_A 117 GKKDEVKELLNMTNLWNKDANI-----LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVI 191 (538)
T ss_dssp SCHHHHHHHTTCGGGTTSBGGG-----CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEE
T ss_pred HHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 3567899999999888877764 9999999999999999999999999999999988777766666544 256677
Q ss_pred EEecChhHHHhhcCeEEEEeCCEE
Q 044321 363 SLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 363 ~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
+++|+..++..+||+|++|++|..
T Consensus 192 ~vsHdl~~~~~~~d~i~vl~~~~~ 215 (538)
T 3ozx_A 192 VVDHDLIVLDYLTDLIHIIYGESS 215 (538)
T ss_dssp EECSCHHHHHHHCSEEEEEEEETT
T ss_pred EEEeChHHHHhhCCEEEEecCCcc
Confidence 788999999999999999987543
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.93 E-value=1.6e-25 Score=256.16 Aligned_cols=107 Identities=25% Similarity=0.322 Sum_probs=83.9
Q ss_pred HHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCC---cEEEEeCCChhhHHHHHHHHHHHHHHc--CCe
Q 044321 285 ITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPA---QALFMDEISNSTTFQIVNSLRQFIHIL--EGT 359 (521)
Q Consensus 285 ~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P---~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t 359 (521)
.+..+|+.+||.... ++ +.+..|||||||||+||++|+.+| ++|||||||+++|....+.|.++++.+ .+.
T Consensus 784 ~~~~~L~~vGL~~~~---lg-q~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~ 859 (916)
T 3pih_A 784 RTLQVLHDVGLGYVK---LG-QPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGN 859 (916)
T ss_dssp HHHHHHHHTTGGGSB---TT-CCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCchhh---cc-CCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 456788999996422 11 344579999999999999999865 799999999998877666666655433 345
Q ss_pred EEEEEecChhHHHhhcCeEEEE------eCCEEEEecCHhHHH
Q 044321 360 ILISLLQPAPETYDLFDDIILI------SNGHIVYQGPREYVL 396 (521)
Q Consensus 360 ~ii~i~h~~~~~~~l~D~VivL------~~G~iv~~G~~~~v~ 396 (521)
+||+++|+...+ ..||+|++| ++|+|++.|+++++.
T Consensus 860 TVIvI~HdL~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 860 TVIVIEHNLDVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp EEEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred EEEEEeCCHHHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 566677888665 569999999 899999999999985
No 61
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.93 E-value=1.4e-25 Score=254.63 Aligned_cols=106 Identities=21% Similarity=0.229 Sum_probs=86.5
Q ss_pred HHHHHHHHcCCCcc-ccccccCccCCCCChHHHHHHHHHHHHcCC---CcEEEEeCCChhhHHHHHHHHHHHHHHc--CC
Q 044321 285 ITDYILKILGLDVC-ADTMVGDEILRGISGGQRKRVTTGEMLVGP---AQALFMDEISNSTTFQIVNSLRQFIHIL--EG 358 (521)
Q Consensus 285 ~~~~iL~~lgL~~~-~dt~vg~~~~r~LSGGqrQRvaIAraLv~~---P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~ 358 (521)
.+..+|+.+||... .+..+ ..|||||||||+||++|+.+ |++|||||||+++|....+.|.++++.+ .+
T Consensus 709 ~~~~~L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G 783 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQPA-----TELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG 783 (842)
T ss_dssp HHHHHHHHTTCTTSBTTCCG-----GGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCcccccCCc-----ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 46778999999763 45544 45999999999999999996 7999999999998877666666655433 35
Q ss_pred eEEEEEecChhHHHhhcCeEEEE------eCCEEEEecCHhHHH
Q 044321 359 TILISLLQPAPETYDLFDDIILI------SNGHIVYQGPREYVL 396 (521)
Q Consensus 359 t~ii~i~h~~~~~~~l~D~VivL------~~G~iv~~G~~~~v~ 396 (521)
.+||+++|+.+++ ..||+|++| ++|+|++.|+++++.
T Consensus 784 ~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 784 NTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp CEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred CEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 5666678888887 789999999 799999999999873
No 62
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.92 E-value=6.9e-25 Score=249.82 Aligned_cols=105 Identities=23% Similarity=0.243 Sum_probs=85.1
Q ss_pred HHHHHHHcCCCc-cccccccCccCCCCChHHHHHHHHHHHHcCCC---cEEEEeCCChhhHHHHHHHHHHHHHHc--CCe
Q 044321 286 TDYILKILGLDV-CADTMVGDEILRGISGGQRKRVTTGEMLVGPA---QALFMDEISNSTTFQIVNSLRQFIHIL--EGT 359 (521)
Q Consensus 286 ~~~iL~~lgL~~-~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P---~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t 359 (521)
...+|+.+||.. ..+..++ .|||||||||+||++|+.+| ++|||||||+++|......|.++++.+ .+.
T Consensus 825 ~~~~L~~~gL~~~~l~~~~~-----~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~ 899 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLGQPAT-----TLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD 899 (972)
T ss_dssp HHHHHHHTTCSSSBTTCCGG-----GCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCcccccCchh-----hCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 456899999986 5565554 59999999999999999865 999999999998877666666555433 355
Q ss_pred EEEEEecChhHHHhhcCeEEEE------eCCEEEEecCHhHHH
Q 044321 360 ILISLLQPAPETYDLFDDIILI------SNGHIVYQGPREYVL 396 (521)
Q Consensus 360 ~ii~i~h~~~~~~~l~D~VivL------~~G~iv~~G~~~~v~ 396 (521)
+||+++|+.+.+ ..||+|++| ++|+|++.|+++++.
T Consensus 900 TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 900 TVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp EEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred EEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 666678888765 689999999 789999999999885
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.92 E-value=7.6e-25 Score=250.23 Aligned_cols=106 Identities=25% Similarity=0.255 Sum_probs=85.5
Q ss_pred HHHHHHHcCCCc-cccccccCccCCCCChHHHHHHHHHHHHcCCC---cEEEEeCCChhhHHHHHHHHHHHHHHc--CCe
Q 044321 286 TDYILKILGLDV-CADTMVGDEILRGISGGQRKRVTTGEMLVGPA---QALFMDEISNSTTFQIVNSLRQFIHIL--EGT 359 (521)
Q Consensus 286 ~~~iL~~lgL~~-~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P---~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t 359 (521)
...+|+.+||.. ..+..++ .|||||||||+||++|+.+| ++|||||||+++|......|.++++.+ .+.
T Consensus 843 ~~~~L~~lgL~~~~l~~~~~-----~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~ 917 (993)
T 2ygr_A 843 YLRTLVDVGLGYVRLGQPAP-----TLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGN 917 (993)
T ss_dssp HHHHHHHTTGGGSBTTCCGG-----GSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCcccccCccc-----cCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 456899999976 4555554 59999999999999999865 999999999998887766666655433 355
Q ss_pred EEEEEecChhHHHhhcCeEEEE------eCCEEEEecCHhHHHH
Q 044321 360 ILISLLQPAPETYDLFDDIILI------SNGHIVYQGPREYVLE 397 (521)
Q Consensus 360 ~ii~i~h~~~~~~~l~D~VivL------~~G~iv~~G~~~~v~~ 397 (521)
+||+++|+...+ ..||+|++| ++|++++.|+++++..
T Consensus 918 TVIvisHdl~~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 918 TVIVIEHNLDVI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp EEEEECCCHHHH-TTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred EEEEEcCCHHHH-HhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 666677888765 689999999 6899999999998853
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.91 E-value=8e-27 Score=250.03 Aligned_cols=175 Identities=12% Similarity=0.040 Sum_probs=132.7
Q ss_pred eeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC------------ceeeecCCcc---ccCCCCHHHHHHHHHH
Q 044321 175 KDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK------------NRCDISQHDV---HIGEMTVRETLAFSAR 239 (521)
Q Consensus 175 ~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~------------~~~~v~q~d~---~~~~lTV~E~l~f~~~ 239 (521)
.++|+.+++|++++|+||||||||||+|+|+|++.|..+ ..+|++|... +...+||+||+ |+..
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~ 207 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPT-WGQS 207 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTT-CSCB
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhh-cccc
Confidence 379999999999999999999999999999998865322 2367777763 34457888887 6432
Q ss_pred hc-cCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHH
Q 044321 240 CQ-GVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKR 318 (521)
Q Consensus 240 ~~-~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQR 318 (521)
.. +.. ....+..+++.+||.+..+ + ..||||||||
T Consensus 208 ~~~~~~-------------------------------------~~~~~~~ll~~~gl~~~~~--~-----~~LSgGq~qr 243 (460)
T 2npi_A 208 LTSGAT-------------------------------------LLHNKQPMVKNFGLERINE--N-----KDLYLECISQ 243 (460)
T ss_dssp CBSSCC-------------------------------------SSCCBCCEECCCCSSSGGG--C-----HHHHHHHHHH
T ss_pred cccCcc-------------------------------------hHHHHHHHHHHhCCCcccc--h-----hhhhHHHHHH
Confidence 10 000 0001123566788876654 2 4599999999
Q ss_pred HHHHHH--HcCCCcE----EEEeC-CChhhHHHHHHHHHHHHHHcCCeEEEEEecChh-----HHHhhcCe-----EEEE
Q 044321 319 VTTGEM--LVGPAQA----LFMDE-ISNSTTFQIVNSLRQFIHILEGTILISLLQPAP-----ETYDLFDD-----IILI 381 (521)
Q Consensus 319 vaIAra--Lv~~P~i----LlLDE-PTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~-----~~~~l~D~-----VivL 381 (521)
|+||++ |+.+|++ ||||| ||+++|.. .+.|.+++++.+.|+|+++|++.+ ++..+||+ |++|
T Consensus 244 lalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l 322 (460)
T 2npi_A 244 LGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFI 322 (460)
T ss_dssp HHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEE
T ss_pred HHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEE
Confidence 999999 9999999 99999 99999887 777888877777777666655431 66689999 9999
Q ss_pred e-CCEEEEecCHhHHH
Q 044321 382 S-NGHIVYQGPREYVL 396 (521)
Q Consensus 382 ~-~G~iv~~G~~~~v~ 396 (521)
+ +|+++ .|+++++.
T Consensus 323 ~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 323 PKLDGVS-AVDDVYKR 337 (460)
T ss_dssp CCCTTCC-CCCHHHHH
T ss_pred eCCCcEE-ECCHHHHh
Confidence 9 99999 99987663
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.89 E-value=7.5e-23 Score=215.51 Aligned_cols=79 Identities=16% Similarity=0.133 Sum_probs=67.0
Q ss_pred CChHHHHHHHHHHHHcCCC--cEEEEeCCChhhHHHHHHHHHHHHHHcC-CeEEEEEecChhHHHhhcCeEEEE----eC
Q 044321 311 ISGGQRKRVTTGEMLVGPA--QALFMDEISNSTTFQIVNSLRQFIHILE-GTILISLLQPAPETYDLFDDIILI----SN 383 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P--~iLlLDEPTs~~~~~i~~~L~~l~~~~~-~t~ii~i~h~~~~~~~l~D~VivL----~~ 383 (521)
|||||||||+||++|+.+| ++|||||||+++|......|.++++.+. +.+||+++|+. ++...||++++| .+
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~-~~~~~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLA-QIAARAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCH-HHHTTCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHHhhcCeEEEEEEeccC
Confidence 6999999999999999999 9999999999999988888888776652 45555567776 566889999999 99
Q ss_pred CEEEEec
Q 044321 384 GHIVYQG 390 (521)
Q Consensus 384 G~iv~~G 390 (521)
|+++...
T Consensus 375 G~~~~~~ 381 (415)
T 4aby_A 375 GRTVSHV 381 (415)
T ss_dssp TEEEEEE
T ss_pred CceEEEE
Confidence 9997654
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.88 E-value=1.9e-21 Score=202.64 Aligned_cols=82 Identities=22% Similarity=0.342 Sum_probs=68.3
Q ss_pred ccCCCCChHHHHHHHHHHHHc------CCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCe
Q 044321 306 EILRGISGGQRKRVTTGEMLV------GPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDD 377 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIAraLv------~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~ 377 (521)
.++..|||||||||+||+||+ .+|++|||||||+++|......+.+++..+ .+.+|++++|+... ...||+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d~ 353 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFDR 353 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCSC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCCE
Confidence 355679999999999999999 799999999999999988888777776654 34566667788765 778999
Q ss_pred EEEEeCCEEEE
Q 044321 378 IILISNGHIVY 388 (521)
Q Consensus 378 VivL~~G~iv~ 388 (521)
|++|++|+++.
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999975
No 67
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.86 E-value=3.8e-22 Score=185.82 Aligned_cols=63 Identities=6% Similarity=-0.006 Sum_probs=47.4
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHH----------------HHHHHHHHH---HHcCCeEEEEEecChhH
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQ----------------IVNSLRQFI---HILEGTILISLLQPAPE 370 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~----------------i~~~L~~l~---~~~~~t~ii~i~h~~~~ 370 (521)
..||||||||+||++++.+|++|+|||||++++.. ....+.+++ ...+.| +|+++|+..+
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~t-vi~vtH~~~~ 161 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFR-YVYILNSPEE 161 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCS-EEEEECSHHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCc-EEEEeCCHHH
Confidence 36999999999999999999999999999998877 445555542 222444 5556677766
Q ss_pred HHh
Q 044321 371 TYD 373 (521)
Q Consensus 371 ~~~ 373 (521)
+..
T Consensus 162 ~~~ 164 (171)
T 4gp7_A 162 VEE 164 (171)
T ss_dssp HHH
T ss_pred hhh
Confidence 643
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.84 E-value=2.8e-23 Score=200.24 Aligned_cols=138 Identities=16% Similarity=0.145 Sum_probs=84.2
Q ss_pred cCCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCce----------------eeecCCccccCCC
Q 044321 165 PSRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNR----------------CDISQHDVHIGEM 228 (521)
Q Consensus 165 ~~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~----------------~~v~q~d~~~~~l 228 (521)
++.++++.+|+|| ++|++++|+|||||||||||++|+|+ .|+.+.. +|++|+.
T Consensus 7 pk~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~------ 75 (208)
T 3b85_A 7 PKTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL------ 75 (208)
T ss_dssp CCSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC--------
T ss_pred cCCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH------
Confidence 3444566799996 89999999999999999999999998 6642111 2222211
Q ss_pred CHHHHH-HHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCcc
Q 044321 229 TVRETL-AFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI 307 (521)
Q Consensus 229 TV~E~l-~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 307 (521)
.||+ .+.... ..... .......++.+++. |
T Consensus 76 --~enl~~~~~~~---------------~~~~~------------------~~~~~~~~~~~l~~-g------------- 106 (208)
T 3b85_A 76 --NEKIDPYLRPL---------------HDALR------------------DMVEPEVIPKLMEA-G------------- 106 (208)
T ss_dssp ------CTTTHHH---------------HHHHT------------------TTSCTTHHHHHHHT-T-------------
T ss_pred --HHHHHHHHHHH---------------HHHHH------------------HhccHHHHHHHHHh-C-------------
Confidence 3443 221000 00000 00001123444442 2
Q ss_pred CCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHH
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPET 371 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~ 371 (521)
| ||||||+|||||+.+|++|||||||++....+.+.|+++ . .+++|+ ++|+...+
T Consensus 107 ---l--Gq~qrv~lAraL~~~p~lllLDEPts~~~~~l~~~l~~l-~--~g~tii-vtHd~~~~ 161 (208)
T 3b85_A 107 ---I--VEVAPLAYMRGRTLNDAFVILDEAQNTTPAQMKMFLTRL-G--FGSKMV-VTGDITQV 161 (208)
T ss_dssp ---S--EEEEEGGGGTTCCBCSEEEEECSGGGCCHHHHHHHHTTB-C--TTCEEE-EEEC----
T ss_pred ---C--chHHHHHHHHHHhcCCCEEEEeCCccccHHHHHHHHHHh-c--CCCEEE-EECCHHHH
Confidence 3 999999999999999999999999999666666666665 2 345566 67776443
No 69
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.84 E-value=1.6e-24 Score=220.26 Aligned_cols=157 Identities=13% Similarity=0.057 Sum_probs=112.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHH-HHHHHHHhccCchhhHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRE-TLAFSARCQGVGSRYEM 249 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E-~l~f~~~~~~~~~~~~~ 249 (521)
..+|+|||++|++|++++|+||||||||||+++|+|++ ...+.+|++|...++. .|+++ |+.|....
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~--~G~I~~~v~q~~~lf~-~ti~~~ni~~~~~~--------- 180 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL--GGSVLSFANHKSHFWL-ASLADTRAALVDDA--------- 180 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH--TCEEECGGGTTSGGGG-GGGTTCSCEEEEEE---------
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc--CceEEEEecCcccccc-ccHHHHhhccCccc---------
Confidence 46899999999999999999999999999999999988 3344567788765554 57776 76653100
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCC
Q 044321 250 LAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPA 329 (521)
Q Consensus 250 ~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P 329 (521)
. ..+...++.+ |+..++ +..|||||||| ||||+.+|
T Consensus 181 -----------------~----------------~~~~~~i~~~-L~~gld-------g~~LSgGqkQR---ARAll~~p 216 (305)
T 2v9p_A 181 -----------------T----------------HACWRYFDTY-LRNALD-------GYPVSIDRKHK---AAVQIKAP 216 (305)
T ss_dssp -----------------C----------------HHHHHHHHHT-TTGGGG-------TCCEECCCSSC---CCCEECCC
T ss_pred -----------------c----------------HHHHHHHHHH-hHccCC-------ccCcCHHHHHH---HHHHhCCC
Confidence 0 0011233333 444444 24699999999 99999999
Q ss_pred cEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHHHHHHHH
Q 044321 330 QALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYVLEFFKF 401 (521)
Q Consensus 330 ~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v~~~f~~ 401 (521)
+||| |+++|......+..+ +|.. .+...||+| +|++|++++.|+++++..+|..
T Consensus 217 ~iLl----Ts~LD~~~~~~i~~l------------tH~~-~~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 217 PLLV----TSNIDVQAEDRYLYL------------HSRV-QTFRFEQPC-TDESGEQPFNITDADWKSFFVR 270 (305)
T ss_dssp CEEE----EESSCSTTCGGGGGG------------TTTE-EEEECCCCC-CCC---CCCCCCHHHHHHHHHH
T ss_pred CEEE----ECCCCHHHHHHHHHH------------hCCH-HHHHhCCEE-EEeCCEEEEeCCHHHHHHHHHH
Confidence 9999 888777655555421 4443 345789999 9999999999999998666654
No 70
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.81 E-value=7.7e-21 Score=178.75 Aligned_cols=78 Identities=9% Similarity=0.037 Sum_probs=65.1
Q ss_pred cCCCCChHHHHHHHHHHH-----HcCCCcEEEEeC--CChhhHHHHHHHHHHHHHHcCCeEEEEEe--cChhHHHhhcCe
Q 044321 307 ILRGISGGQRKRVTTGEM-----LVGPAQALFMDE--ISNSTTFQIVNSLRQFIHILEGTILISLL--QPAPETYDLFDD 377 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAra-----Lv~~P~iLlLDE--PTs~~~~~i~~~L~~l~~~~~~t~ii~i~--h~~~~~~~l~D~ 377 (521)
++..||||||||++||+| |+.+|++||||| ||+++|....+.+.+++...+.|+|+++| |+.+.+..++|+
T Consensus 73 ~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 73 YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred cccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhc
Confidence 345699999999999996 999999999999 99999999999999988764455777775 788888889998
Q ss_pred EEEEeCCEEEE
Q 044321 378 IILISNGHIVY 388 (521)
Q Consensus 378 VivL~~G~iv~ 388 (521)
.+|++++
T Consensus 153 ----~~~~i~~ 159 (178)
T 1ye8_A 153 ----PGAVLIE 159 (178)
T ss_dssp ----TTCEEEE
T ss_pred ----CCcEEEE
Confidence 4566654
No 71
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.80 E-value=1.5e-19 Score=185.03 Aligned_cols=87 Identities=16% Similarity=0.222 Sum_probs=65.9
Q ss_pred CCCCChHHHHHHHHHHHHc----CCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeE--EE
Q 044321 308 LRGISGGQRKRVTTGEMLV----GPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDI--IL 380 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv----~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~V--iv 380 (521)
+..|||||||||+||++|+ .+|++|||||||+++|....+.+.+++... .++++|+++|+ .++.+.||++ ++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~-~~~~~~~d~~~~v~ 295 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHN-KIVMEAADLLHGVT 295 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCC-TTGGGGCSEEEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC-HHHHhhCceEEEEE
Confidence 4569999999999999997 689999999999999998888777776654 34555666676 4678899987 78
Q ss_pred EeCCEE-EEecCHhHH
Q 044321 381 ISNGHI-VYQGPREYV 395 (521)
Q Consensus 381 L~~G~i-v~~G~~~~v 395 (521)
|.+|.. +.....++.
T Consensus 296 ~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 296 MVNGVSAIVPVEVEKI 311 (322)
T ss_dssp ESSSCEEEEECCC---
T ss_pred EeCCEEEEEEEEcchh
Confidence 887754 444554443
No 72
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.78 E-value=5.4e-22 Score=209.55 Aligned_cols=158 Identities=14% Similarity=0.132 Sum_probs=115.3
Q ss_pred ceeeeeeEEEEeCCc--------------------EEEEEcCCCChHHHHHHHHhCCCCCCCC----------ceeeecC
Q 044321 171 LTILKDVSGIIRPGR--------------------MTLLLGPPGSVKTTLLLALAGKLDSSLK----------NRCDISQ 220 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge--------------------~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------~~~~v~q 220 (521)
..+|++||+.|++|+ +++|+||||||||||+|+|+|++.|..+ ..++++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 468999999999999 9999999999999999999998876521 1156666
Q ss_pred CccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccc
Q 044321 221 HDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCAD 300 (521)
Q Consensus 221 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~d 300 (521)
++ .++.+|+.|++.++.. ...++.+|+.++|.+..
T Consensus 116 ~~-~~~~ltv~D~~g~~~~-------------------------------------------~~~~~~~L~~~~L~~~~- 150 (413)
T 1tq4_A 116 HP-NIPNVVFWDLPGIGST-------------------------------------------NFPPDTYLEKMKFYEYD- 150 (413)
T ss_dssp CS-SCTTEEEEECCCGGGS-------------------------------------------SCCHHHHHHHTTGGGCS-
T ss_pred cc-ccCCeeehHhhcccch-------------------------------------------HHHHHHHHHHcCCCccC-
Confidence 53 4567777776544210 01245678888887542
Q ss_pred ccccCccCCCCChH--HHHHHHHHHHHcC----------CCcEEEEeCCChhhH----HHHHHHHHHHHH----HcC---
Q 044321 301 TMVGDEILRGISGG--QRKRVTTGEMLVG----------PAQALFMDEISNSTT----FQIVNSLRQFIH----ILE--- 357 (521)
Q Consensus 301 t~vg~~~~r~LSGG--qrQRvaIAraLv~----------~P~iLlLDEPTs~~~----~~i~~~L~~l~~----~~~--- 357 (521)
..+ . |||| |+||+.||++|+. +|++++|||||+++| .++.+.|+++.. +.+
T Consensus 151 ~~~-----~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~ 224 (413)
T 1tq4_A 151 FFI-----I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAE 224 (413)
T ss_dssp EEE-----E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CeE-----E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 222 2 9999 9999999999999 999999999999754 456666666642 221
Q ss_pred CeEEEEEecChhH--HHhhcCeEE
Q 044321 358 GTILISLLQPAPE--TYDLFDDII 379 (521)
Q Consensus 358 ~t~ii~i~h~~~~--~~~l~D~Vi 379 (521)
.+++++++|...+ +.+++|+|.
T Consensus 225 ~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 225 PPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp CCEEECCTTCTTSTTHHHHHHHHH
T ss_pred CcEEEEecCcCCccCHHHHHHHHH
Confidence 3666666776655 777777764
No 73
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.77 E-value=3.5e-18 Score=177.52 Aligned_cols=86 Identities=12% Similarity=0.045 Sum_probs=75.0
Q ss_pred CccCC-CCChHHHHHHHHHHHHc---------CCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhh
Q 044321 305 DEILR-GISGGQRKRVTTGEMLV---------GPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDL 374 (521)
Q Consensus 305 ~~~~r-~LSGGqrQRvaIAraLv---------~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l 374 (521)
+..++ .|||||||||+||++|+ .+|+||||||||+++|..-...|.+++.... .++|+++|. +. .
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~-qt~i~~th~-~~---~ 333 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP-QAIVTGTEL-AP---G 333 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS-EEEEEESSC-CT---T
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC-cEEEEEEec-cc---c
Confidence 44566 69999999999999999 8999999999999999999999988887665 667777774 33 8
Q ss_pred cCeEEEEeCCEEEEecCHhHH
Q 044321 375 FDDIILISNGHIVYQGPREYV 395 (521)
Q Consensus 375 ~D~VivL~~G~iv~~G~~~~v 395 (521)
+|++++|++|+++..|+++++
T Consensus 334 ~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 334 AALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp CSEEEEEETTEEEECCCTTTS
T ss_pred CCEEEEEECCEEEecCCHHHH
Confidence 999999999999999998765
No 74
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.75 E-value=2.5e-19 Score=182.09 Aligned_cols=158 Identities=15% Similarity=0.117 Sum_probs=105.1
Q ss_pred eeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCcee--------------------------eecCCcc-ccC
Q 044321 174 LKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRC--------------------------DISQHDV-HIG 226 (521)
Q Consensus 174 L~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~--------------------------~v~q~d~-~~~ 226 (521)
++++||.+++|++++|+||||||||||+++|+|++.+.. +.. |++|+.. .++
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~-g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~ 168 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEG-TKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 168 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC-CeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence 457899999999999999999999999999999876542 222 3333333 333
Q ss_pred CCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCc
Q 044321 227 EMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDE 306 (521)
Q Consensus 227 ~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~ 306 (521)
.+|+++++.++... +. ...+++.+|+.+..+.+++
T Consensus 169 ~~~v~e~l~~~~~~--------------------------------------~~-----d~~lldt~gl~~~~~~~~~-- 203 (302)
T 3b9q_A 169 ATVLSKAVKRGKEE--------------------------------------GY-----DVVLCDTSGRLHTNYSLME-- 203 (302)
T ss_dssp HHHHHHHHHHHHHT--------------------------------------TC-----SEEEECCCCCSSCCHHHHH--
T ss_pred HHHHHHHHHHHHHc--------------------------------------CC-----cchHHhcCCCCcchhHHHH--
Confidence 33444443332100 00 0113456777766665555
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCc--EEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEec--------ChhHHHhhcC
Q 044321 307 ILRGISGGQRKRVTTGEMLVGPAQ--ALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQ--------PAPETYDLFD 376 (521)
Q Consensus 307 ~~r~LSGGqrQRvaIAraLv~~P~--iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h--------~~~~~~~l~D 376 (521)
.|| |||++||++|+.+|+ +|+|| ||++++... .++.+.+..+.|+|+++|- ....+....+
T Consensus 204 ---eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~--~~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~ 274 (302)
T 3b9q_A 204 ---ELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP--QAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGI 274 (302)
T ss_dssp ---HHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHH--HHHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCC
T ss_pred ---HHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHH--HHHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCC
Confidence 499 999999999999999 99999 999887653 3455544446666665542 2233445678
Q ss_pred eEEEEeCCEE
Q 044321 377 DIILISNGHI 386 (521)
Q Consensus 377 ~VivL~~G~i 386 (521)
.|.++..|+.
T Consensus 275 pi~~i~~Ge~ 284 (302)
T 3b9q_A 275 PVKFIGVGEA 284 (302)
T ss_dssp CEEEEECSSS
T ss_pred CEEEEeCCCC
Confidence 8999999865
No 75
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.75 E-value=2.1e-21 Score=185.89 Aligned_cols=165 Identities=12% Similarity=0.054 Sum_probs=91.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC------------CC---CCceeeecCCccccCCCCHHHHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD------------SS---LKNRCDISQHDVHIGEMTVRETLA 235 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~------------~~---~~~~~~v~q~d~~~~~lTV~E~l~ 235 (521)
..+++| .+|++|++++|+||||||||||+++|+|+++ +. ....+|++|+...++.+|+.+++.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~ 86 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELL 86 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCce
Confidence 457888 7999999999999999999999999999874 11 112357777666666666665543
Q ss_pred HHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHH------HHHcCCCccccccccCccCC
Q 044321 236 FSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYI------LKILGLDVCADTMVGDEILR 309 (521)
Q Consensus 236 f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i------L~~lgL~~~~dt~vg~~~~r 309 (521)
+.....+....+.. .. .+....+++. ++.+|+....+.++ +
T Consensus 87 ~~~~~~~n~~~~g~----~~------------------------~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 133 (207)
T 1znw_A 87 EWAEIHGGLHRSGT----LA------------------------QPVRAAAATGVPVLIEVDLAGARAIKKTMP-----E 133 (207)
T ss_dssp EEEEEGGGTEEEEE----EH------------------------HHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----T
T ss_pred eehhhcCchhhcCC----cH------------------------HHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----C
Confidence 21100000000000 00 0001111221 33344443334333 3
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhh----HHHHHHH----HHHHHHHcCCeEEEEEecChhHHHhhcCeEEEE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNST----TFQIVNS----LRQFIHILEGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~----~~~i~~~----L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
.|| +|+.+|++++|||||+++ +...... ++++.+. .+.++++++|+.+++..+||+|++|
T Consensus 134 ~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~-~g~tvi~vtHdl~~~~~~~d~i~~l 201 (207)
T 1znw_A 134 AVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQ-GDFDKVVVNRRLESACAELVSLLVG 201 (207)
T ss_dssp SEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGG-GGSSEEEECSSHHHHHHHHHHHHC-
T ss_pred cEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhh-ccCcEEEECCCHHHHHHHHHHHHHh
Confidence 466 899999999999999975 4444444 4444322 2445556789999999999999998
Q ss_pred e
Q 044321 382 S 382 (521)
Q Consensus 382 ~ 382 (521)
.
T Consensus 202 ~ 202 (207)
T 1znw_A 202 T 202 (207)
T ss_dssp -
T ss_pred c
Confidence 4
No 76
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.74 E-value=1.9e-17 Score=188.15 Aligned_cols=109 Identities=22% Similarity=0.242 Sum_probs=84.4
Q ss_pred hhhhHHHHHHHHcCCCcc-ccccccCccCCCCChHHHHHHHHHHHHcCCC--cEEEEeCCChhhHHHHHHHHHHHHHHc-
Q 044321 281 EVSVITDYILKILGLDVC-ADTMVGDEILRGISGGQRKRVTTGEMLVGPA--QALFMDEISNSTTFQIVNSLRQFIHIL- 356 (521)
Q Consensus 281 ~~~~~~~~iL~~lgL~~~-~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P--~iLlLDEPTs~~~~~i~~~L~~l~~~~- 356 (521)
++..+++ .|..+||... .++.+. .|||||||||.||++|+.+| .+|||||||++++..-.+.|.++++.+
T Consensus 355 ei~~rl~-~L~~vGL~~l~l~r~~~-----tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~ 428 (842)
T 2vf7_A 355 DLVKRLD-VLLHLGLGYLGLDRSTP-----TLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLK 428 (842)
T ss_dssp HHHHHHH-HHHHTTCTTSBTTCBGG-----GSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhCCCCcCCccCCcC-----cCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHH
Confidence 3445555 5788999864 566655 59999999999999999999 599999999988766555555544332
Q ss_pred -CCeEEEEEecChhHHHhhcCeEEEE------eCCEEEEecCHhHHH
Q 044321 357 -EGTILISLLQPAPETYDLFDDIILI------SNGHIVYQGPREYVL 396 (521)
Q Consensus 357 -~~t~ii~i~h~~~~~~~l~D~VivL------~~G~iv~~G~~~~v~ 396 (521)
.+.+||+++|+.+ +...||+|++| .+|++++.|+++++.
T Consensus 429 ~~G~TVIvVeHdl~-~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 429 RGGNSLFVVEHDLD-VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp TTTCEEEEECCCHH-HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred HcCCEEEEEcCCHH-HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 3455666778876 55789999999 799999999988764
No 77
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.73 E-value=2.8e-19 Score=175.56 Aligned_cols=172 Identities=14% Similarity=0.038 Sum_probs=95.4
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC-----CCceeeecCCccccCCCCHHHHHHHHHHhccC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS-----LKNRCDISQHDVHIGEMTVRETLAFSARCQGV 243 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~-----~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~ 243 (521)
+.+.+|+||||++++|++++|+||||||||||+++|+|++... ....++++|++ +++.+|+.+++.+.......
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~~~~~ 88 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR-FYKVLTAEQKAKALKGQYNF 88 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG-GBCCCCHHHHHHHHTTCCCT
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc-CccccCHhHhhhhhccCCCC
Confidence 4457999999999999999999999999999999999965311 01235788874 67789999988764322111
Q ss_pred chhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHH
Q 044321 244 GSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGE 323 (521)
Q Consensus 244 ~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAr 323 (521)
... + ..+. ......|+.+ .+..+..+ ..||+||+||+.+ +
T Consensus 89 ~~~-~----------------~~~~---------------~~~~~~L~~l--~~~~~~~~-----~~ls~g~~~r~~~-~ 128 (245)
T 2jeo_A 89 DHP-D----------------AFDN---------------DLMHRTLKNI--VEGKTVEV-----PTYDFVTHSRLPE-T 128 (245)
T ss_dssp TSG-G----------------GBCH---------------HHHHHHHHHH--HTTCCEEE-----CCEETTTTEECSS-C
T ss_pred CCc-c----------------cccH---------------HHHHHHHHHH--HCCCCeec-----ccccccccCccCc-e
Confidence 000 0 0000 0112223322 23334443 4699999999988 5
Q ss_pred HHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHH-hhcCeEEEEeCCEEEEecCHhHHHH
Q 044321 324 MLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETY-DLFDDIILISNGHIVYQGPREYVLE 397 (521)
Q Consensus 324 aLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~-~l~D~VivL~~G~iv~~G~~~~v~~ 397 (521)
+++.+|+++|||||+...+..+ .++ .+ .+|++++|+...+. .+++++ .+|+ +.+++..
T Consensus 129 ~~~~~~~~lilDg~~~~~~~~l----~~~---~~-~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 129 TVVYPADVVLFEGILVFYSQEI----RDM---FH-LRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp EEECCCSEEEEECTTTTTSHHH----HTT---CS-EEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred EEecCCCEEEEeCccccccHHH----HHh---cC-eEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 8889999999999988655432 221 23 44555556433443 334444 5564 4555543
No 78
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.72 E-value=3.4e-17 Score=168.68 Aligned_cols=78 Identities=27% Similarity=0.278 Sum_probs=61.3
Q ss_pred cCCCCChHHHH------HHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCeE
Q 044321 307 ILRGISGGQRK------RVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDDI 378 (521)
Q Consensus 307 ~~r~LSGGqrQ------RvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~V 378 (521)
.+..||||||| |+++|++|+.+|++|||||||+++|......+.+++... .+.+|++++|+ .++.+.||+|
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~-~~~~~~~d~~ 323 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHD-EELKDAADHV 323 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESC-GGGGGGCSEE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECh-HHHHHhCCEE
Confidence 45679999999 678888999999999999999999988777777666543 23455556677 4678999999
Q ss_pred EEEe--CCE
Q 044321 379 ILIS--NGH 385 (521)
Q Consensus 379 ivL~--~G~ 385 (521)
++|. +|.
T Consensus 324 ~~l~~~~g~ 332 (339)
T 3qkt_A 324 IRISLENGS 332 (339)
T ss_dssp EEEEEETTE
T ss_pred EEEEecCCc
Confidence 9986 454
No 79
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.71 E-value=1.3e-17 Score=167.94 Aligned_cols=181 Identities=14% Similarity=0.075 Sum_probs=104.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-ceeeecCCccccCCCCHHHHHH-HHHHhccCchhhH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-NRCDISQHDVHIGEMTVRETLA-FSARCQGVGSRYE 248 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-~~~~v~q~d~~~~~lTV~E~l~-f~~~~~~~~~~~~ 248 (521)
..+|+++++.|++|++++|+||||||||||++.|+|.+.+..+ ...|+..+ ++..+... +.....+... .
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e------~~~~~~~~r~~~~~~~~~~--~ 93 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE------ESVEETAEDLIGLHNRVRL--R 93 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS------SCHHHHHHHHHHHHTTCCG--G
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc------CCHHHHHHHHHHHHcCCCh--h
Confidence 4689999999999999999999999999999999998765422 22344332 23222110 1111111100 0
Q ss_pred HHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHH-HHHHHHHHHHcC
Q 044321 249 MLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQ-RKRVTTGEMLVG 327 (521)
Q Consensus 249 ~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGq-rQRvaIAraLv~ 327 (521)
....+.. ......+....++.+++..++. .+ ..+..+|.+| +||+. |+++..
T Consensus 94 ~~~~l~~-------------------~~~~~~~~~~~~~~~l~~~~l~--i~-----~~~~~~~~~~l~~~~~-a~~~~~ 146 (296)
T 1cr0_A 94 QSDSLKR-------------------EIIENGKFDQWFDELFGNDTFH--LY-----DSFAEAETDRLLAKLA-YMRSGL 146 (296)
T ss_dssp GCHHHHH-------------------HHHHHTHHHHHHHHHHSSSCEE--EE-----CCCCSCCHHHHHHHHH-HHHHTT
T ss_pred hcccccc-------------------CCCCHHHHHHHHHHHhccCCEE--EE-----CCCCCCCHHHHHHHHH-HHHHhc
Confidence 0000000 0001111222333343322221 11 1123589998 66666 999999
Q ss_pred CCcEEEEeCCCh---h---hH-----HHHHHHHHHHHHHcCCeEEEEEecC-hh--------------------HHHhhc
Q 044321 328 PAQALFMDEISN---S---TT-----FQIVNSLRQFIHILEGTILISLLQP-AP--------------------ETYDLF 375 (521)
Q Consensus 328 ~P~iLlLDEPTs---~---~~-----~~i~~~L~~l~~~~~~t~ii~i~h~-~~--------------------~~~~l~ 375 (521)
+|++||+||||+ + .+ ..+.+.|++++++.+.++|+++|.. .. .+..+|
T Consensus 147 ~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~a 226 (296)
T 1cr0_A 147 GCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLS 226 (296)
T ss_dssp CCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHC
T ss_pred CCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhC
Confidence 999999999999 3 22 2466667777665566666655443 23 678899
Q ss_pred CeEEEEeCCEE
Q 044321 376 DDIILISNGHI 386 (521)
Q Consensus 376 D~VivL~~G~i 386 (521)
|+|++|++|+.
T Consensus 227 D~vi~L~~~~~ 237 (296)
T 1cr0_A 227 DTIIALERNQQ 237 (296)
T ss_dssp SEEEEEEEC--
T ss_pred cEEEEEecCcc
Confidence 99999998874
No 80
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.71 E-value=1.7e-19 Score=184.19 Aligned_cols=125 Identities=10% Similarity=-0.065 Sum_probs=92.0
Q ss_pred eeEE-EEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC--CceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHH
Q 044321 176 DVSG-IIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL--KNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAE 252 (521)
Q Consensus 176 dVS~-~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~--~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~ 252 (521)
|+|. .+++|++++|+||||||||||+++|+|++.|.. ...++|+|++.+++. |+.||+.+... .+....
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~-t~~e~~~~~~~-~g~~~~------ 152 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPN-AELQRRNLMHR-KGFPES------ 152 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCH-HHHHHTTCTTC-TTSGGG------
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcc-cHHHHHHHHHh-cCCChH------
Confidence 4555 378999999999999999999999999987642 235899999888877 99998754211 111000
Q ss_pred HHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEE
Q 044321 253 LTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQAL 332 (521)
Q Consensus 253 l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iL 332 (521)
.....+..+|+.++ ....+..+. .|||||+|||++|++++.+|+||
T Consensus 153 ----------------------------~d~~~~~~~L~~l~-~~~~~~~~~-----~lS~G~~qRv~~a~al~~~p~il 198 (312)
T 3aez_A 153 ----------------------------YNRRALMRFVTSVK-SGSDYACAP-----VYSHLHYDIIPGAEQVVRHPDIL 198 (312)
T ss_dssp ----------------------------BCHHHHHHHHHHHH-TTCSCEEEE-----EEETTTTEEEEEEEEEECSCSEE
T ss_pred ----------------------------HHHHHHHHHHHHhC-CCcccCCcc-----cCChhhhhhhhhHHHhccCCCEE
Confidence 00112345666676 444444443 59999999999999999999999
Q ss_pred EEeCCChhhH
Q 044321 333 FMDEISNSTT 342 (521)
Q Consensus 333 lLDEPTs~~~ 342 (521)
|||||+...+
T Consensus 199 IlDep~~~~d 208 (312)
T 3aez_A 199 ILEGLNVLQT 208 (312)
T ss_dssp EEECTTTTCC
T ss_pred EECCccccCC
Confidence 9999998653
No 81
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.70 E-value=5.2e-21 Score=185.16 Aligned_cols=38 Identities=21% Similarity=0.163 Sum_probs=25.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
..-|+||||+|++|++++|+||||||||||+++|+|++
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45799999999999999999999999999999999987
No 82
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.70 E-value=5e-18 Score=176.21 Aligned_cols=157 Identities=15% Similarity=0.124 Sum_probs=104.5
Q ss_pred eeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCcee--------------------------eecCCcc-ccCC
Q 044321 175 KDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRC--------------------------DISQHDV-HIGE 227 (521)
Q Consensus 175 ~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~--------------------------~v~q~d~-~~~~ 227 (521)
..+||.+++|++++|+||||||||||++.|+|++.+.. +.. +++|+.. .++.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~-G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~ 226 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEG-TKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 226 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccC-CEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChh
Confidence 46899999999999999999999999999999876542 222 3333333 3333
Q ss_pred CCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCcc
Q 044321 228 MTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEI 307 (521)
Q Consensus 228 lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~ 307 (521)
+|+++++.++... +. ...+++.+|+.+..+.++.
T Consensus 227 ~tv~e~l~~~~~~--------------------------------------~~-----d~~lldt~Gl~~~~~~~~~--- 260 (359)
T 2og2_A 227 TVLSKAVKRGKEE--------------------------------------GY-----DVVLCDTSGRLHTNYSLME--- 260 (359)
T ss_dssp HHHHHHHHHHHHT--------------------------------------TC-----SEEEEECCCCSSCCHHHHH---
T ss_pred hhHHHHHHHHHhC--------------------------------------CC-----HHHHHHhcCCChhhhhHHH---
Confidence 4444444332100 00 0013455677766655554
Q ss_pred CCCCChHHHHHHHHHHHHcCCCc--EEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecC--------hhHHHhhcCe
Q 044321 308 LRGISGGQRKRVTTGEMLVGPAQ--ALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQP--------APETYDLFDD 377 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv~~P~--iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~--------~~~~~~l~D~ 377 (521)
.|| |||++||++|+.+|+ +|+|| ||++++... .++.+.+..+.|+|+++|-+ ...+....+.
T Consensus 261 --eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~--~~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~p 332 (359)
T 2og2_A 261 --ELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP--QAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIP 332 (359)
T ss_dssp --HHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHH--HHHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCC
T ss_pred --HHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHH--HHHHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCC
Confidence 499 999999999999999 99999 999887653 34455444466666655422 2334456788
Q ss_pred EEEEeCCEE
Q 044321 378 IILISNGHI 386 (521)
Q Consensus 378 VivL~~G~i 386 (521)
|.++..|+.
T Consensus 333 I~~ig~Ge~ 341 (359)
T 2og2_A 333 VKFIGVGEA 341 (359)
T ss_dssp EEEEECSSS
T ss_pred EEEEeCCCC
Confidence 999988864
No 83
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.69 E-value=1.5e-18 Score=178.57 Aligned_cols=134 Identities=13% Similarity=0.181 Sum_probs=93.7
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLA 251 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~ 251 (521)
.+++++|+.|++|++++|+||||||||||+++|+|+++|. .+...+...+. +. + ..
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~-~g~i~i~~~~e----~~------~----~~--------- 214 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE-ERIISIEDTEE----IV------F----KH--------- 214 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT-SCEEEEESSCC----CC------C----SS---------
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC-CcEEEECCeec----cc------c----cc---------
Confidence 3899999999999999999999999999999999998875 23333332211 00 0 00
Q ss_pred HHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcE
Q 044321 252 ELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQA 331 (521)
Q Consensus 252 ~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~i 331 (521)
.. + .++ +..+ |||+||++||+||..+|++
T Consensus 215 -------------------------------------------~~---~-~i~--~~~g--gg~~~r~~la~aL~~~p~i 243 (330)
T 2pt7_A 215 -------------------------------------------HK---N-YTQ--LFFG--GNITSADCLKSCLRMRPDR 243 (330)
T ss_dssp -------------------------------------------CS---S-EEE--EECB--TTBCHHHHHHHHTTSCCSE
T ss_pred -------------------------------------------ch---h-EEE--EEeC--CChhHHHHHHHHhhhCCCE
Confidence 00 0 000 0011 8999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEE
Q 044321 332 LFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHI 386 (521)
Q Consensus 332 LlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~i 386 (521)
|++||||+. ++.+.|+.+. .+++++++++|... +.+.||++++|.+|..
T Consensus 244 lildE~~~~---e~~~~l~~~~--~g~~tvi~t~H~~~-~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 244 IILGELRSS---EAYDFYNVLC--SGHKGTLTTLHAGS-SEEAFIRLANMSSSNS 292 (330)
T ss_dssp EEECCCCST---HHHHHHHHHH--TTCCCEEEEEECSS-HHHHHHHHHHHHHTSG
T ss_pred EEEcCCChH---HHHHHHHHHh--cCCCEEEEEEcccH-HHHHhhhheehhcCCc
Confidence 999999983 3455555543 24543444445544 7889999999988753
No 84
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.69 E-value=3.6e-17 Score=178.11 Aligned_cols=151 Identities=13% Similarity=0.031 Sum_probs=99.7
Q ss_pred EEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeee-cCCccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHH
Q 044321 178 SGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDI-SQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRR 256 (521)
Q Consensus 178 S~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v-~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~ 256 (521)
++.|++|++++|+||||||||||+++|+|...+......|+ +|+.. .++.++. ..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~----~~l~~~~----~~---------------- 330 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESR----AQLLRNA----YS---------------- 330 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCH----HHHHHHH----HT----------------
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCH----HHHHHHH----HH----------------
Confidence 56999999999999999999999999999876642222343 33321 0111111 00
Q ss_pred HHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeC
Q 044321 257 EKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDE 336 (521)
Q Consensus 257 e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDE 336 (521)
.++ + .+. +..+|+....+..+ ..|||||+||+.+|+++..+|++|++|
T Consensus 331 ---~g~----~------------------~~~-~~~~g~~~~~~~~p-----~~LS~g~~q~~~~a~~l~~~p~llilD- 378 (525)
T 1tf7_A 331 ---WGM----D------------------FEE-MERQNLLKIVCAYP-----ESAGLEDHLQIIKSEINDFKPARIAID- 378 (525)
T ss_dssp ---TSC----C------------------HHH-HHHTTSEEECCCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEE-
T ss_pred ---cCC----C------------------HHH-HHhCCCEEEEEecc-----ccCCHHHHHHHHHHHHHhhCCCEEEEc-
Confidence 000 0 011 12345555554443 459999999999999999999999999
Q ss_pred CChhhHHH-----HHHHHHHHH---HHcCCeEEEEEecCh----------hHHHhhcCeEEEEeCCE
Q 044321 337 ISNSTTFQ-----IVNSLRQFI---HILEGTILISLLQPA----------PETYDLFDDIILISNGH 385 (521)
Q Consensus 337 PTs~~~~~-----i~~~L~~l~---~~~~~t~ii~i~h~~----------~~~~~l~D~VivL~~G~ 385 (521)
||++++.. ..+.+.+++ ++.+.|+|++. |+. ..+..+||+|++|.+|+
T Consensus 379 p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvs-h~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 379 SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTN-TSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEE-ECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEE-CcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99976655 444444333 33355555554 554 56678999999999886
No 85
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.68 E-value=3.2e-17 Score=188.39 Aligned_cols=157 Identities=18% Similarity=0.161 Sum_probs=99.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEML 250 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~ 250 (521)
..|++||+|.+.+|++++|+||||||||||||+|++..-.. ....++++....++.
T Consensus 649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~a-q~G~~vpa~~~~~~~----------------------- 704 (934)
T 3thx_A 649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMA-QIGCFVPCESAEVSI----------------------- 704 (934)
T ss_dssp CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHH-HHTCCBSEEEEEEEC-----------------------
T ss_pred eeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHH-hcCCccccccccchH-----------------------
Confidence 46889999999999999999999999999999994311000 000122221111000
Q ss_pred HHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHH--cCC
Q 044321 251 AELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEML--VGP 328 (521)
Q Consensus 251 ~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraL--v~~ 328 (521)
++.++..+|+.+ ...+++|+|+++++.+|++| +.+
T Consensus 705 -----------------------------------~d~i~~~ig~~d--------~l~~~lStf~~e~~~~a~il~~a~~ 741 (934)
T 3thx_A 705 -----------------------------------VDCILARVGAGD--------SQLKGVSTFMAEMLETASILRSATK 741 (934)
T ss_dssp -----------------------------------CSEEEEECC-----------------CHHHHHHHHHHHHHHHCCT
T ss_pred -----------------------------------HHHHHHhcCchh--------hHHHhHhhhHHHHHHHHHHHHhccC
Confidence 000111223321 12246999999999999998 999
Q ss_pred CcEEEEeCCChhhHHHHHHH----HHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHH
Q 044321 329 AQALFMDEISNSTTFQIVNS----LRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQGPREYV 395 (521)
Q Consensus 329 P~iLlLDEPTs~~~~~i~~~----L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v 395 (521)
|+++||||||++++...... +.+.+....+++++++||+ .++..+||++..+.+|++.+.++.+++
T Consensus 742 ~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~-~el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 742 DSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHF-HELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp TCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESC-GGGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCc-HHHHHHhcccceeEeeEEEEEecCCcE
Confidence 99999999999887643322 2222232224455556676 466789999999999999988776654
No 86
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.66 E-value=4.1e-19 Score=177.72 Aligned_cols=130 Identities=13% Similarity=0.121 Sum_probs=83.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCCCCC----------------CceeeecCCccccCCCCHHHHHHHHHHhccCchhhHH
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKLDSSL----------------KNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEM 249 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l~~~~----------------~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~ 249 (521)
.++|+||||||||||+|+|+|+..|.. ...++++|++.+++.+||.||+.|+.......
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~----- 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNEN----- 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTT-----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHH-----
Confidence 479999999999999999999876542 12378899888888999999998864322100
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCC
Q 044321 250 LAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPA 329 (521)
Q Consensus 250 ~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P 329 (521)
..+ .+...+. ....+..++ .|||||||||+||||++.
T Consensus 79 -----------------~~~---------------~i~~~~~----~~~~~~~~~-----~LS~G~~qrv~iaRal~~-- 115 (270)
T 3sop_A 79 -----------------CWE---------------PIEKYIN----EQYEKFLKE-----EVNIARKKRIPDTRVHCC-- 115 (270)
T ss_dssp -----------------CSH---------------HHHHHHH----HHHHHHHHH-----HSCTTCCSSCCCCSCCEE--
T ss_pred -----------------HHH---------------HHHHHHH----HHHHhhhHH-----hcCcccchhhhhheeeee--
Confidence 000 0001111 112222332 499999999999999886
Q ss_pred cEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEec
Q 044321 330 QALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQ 366 (521)
Q Consensus 330 ~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h 366 (521)
++|+|||+.+++..-.+.++.+.. ..++|++++.
T Consensus 116 -lllldep~~gL~~lD~~~l~~L~~--~~~vI~Vi~K 149 (270)
T 3sop_A 116 -LYFISPTGHSLRPLDLEFMKHLSK--VVNIIPVIAK 149 (270)
T ss_dssp -EEEECCCSSSCCHHHHHHHHHHHT--TSEEEEEETT
T ss_pred -eEEEecCCCcCCHHHHHHHHHHHh--cCcEEEEEec
Confidence 999999999877777777776643 2566665543
No 87
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.66 E-value=1.1e-17 Score=194.23 Aligned_cols=158 Identities=14% Similarity=0.049 Sum_probs=104.1
Q ss_pred cceeeeeeEEEEeC-------CcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhcc
Q 044321 170 HLTILKDVSGIIRP-------GRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQG 242 (521)
Q Consensus 170 ~~~iL~dVS~~I~~-------Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~ 242 (521)
...|++||+|.+.+ |++++|+||||||||||||+| |++.+-....+||+|+.. .+||.+++..
T Consensus 768 ~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~~Vpq~~~---~l~v~d~I~~------ 837 (1022)
T 2o8b_B 768 DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGCYVPAEVC---RLTPIDRVFT------ 837 (1022)
T ss_dssp CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHHTTTCCEESSEE---EECCCSBEEE------
T ss_pred CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHhheeEEeccCcC---CCCHHHHHHH------
Confidence 35699999999987 999999999999999999999 876532223358888652 3455443310
Q ss_pred CchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHH
Q 044321 243 VGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTG 322 (521)
Q Consensus 243 ~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIA 322 (521)
.+|+.+.... ....+|+|+++ +++|
T Consensus 838 -------------------------------------------------rig~~d~~~~-----~~stf~~em~~-~a~a 862 (1022)
T 2o8b_B 838 -------------------------------------------------RLGASDRIMS-----GESTFFVELSE-TASI 862 (1022)
T ss_dssp -------------------------------------------------ECC--------------CHHHHHHHH-HHHH
T ss_pred -------------------------------------------------HcCCHHHHhh-----chhhhHHHHHH-HHHH
Confidence 0111111110 11247777665 9999
Q ss_pred HHHcCCCcEEEEeCCChhhHHH-----HHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEE--EecCHhH
Q 044321 323 EMLVGPAQALFMDEISNSTTFQ-----IVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIV--YQGPREY 394 (521)
Q Consensus 323 raLv~~P~iLlLDEPTs~~~~~-----i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv--~~G~~~~ 394 (521)
++++.+|+++|||||+++++.. +...|..+.+ ..+.+++++||+.+.+..++|++.++ +|++. +.|++++
T Consensus 863 l~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~-~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 863 LMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAE-TIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENECED 939 (1022)
T ss_dssp HHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHH-TSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-------
T ss_pred HHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCccc
Confidence 9999999999999999976643 2344555443 22556666788888888899999887 48887 5565543
No 88
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.64 E-value=4.1e-18 Score=181.48 Aligned_cols=160 Identities=14% Similarity=0.100 Sum_probs=107.5
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCce---------------------------eeecCC-
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNR---------------------------CDISQH- 221 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~---------------------------~~v~q~- 221 (521)
...+|+++ |.|.+|++++|+|||||||||||++|+|+.+++.... ++++|.
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~ 222 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPAD 222 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTT
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCC
Confidence 56799999 9999999999999999999999999999987752211 122221
Q ss_pred ccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccc
Q 044321 222 DVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADT 301 (521)
Q Consensus 222 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt 301 (521)
+..++.+|+.+|+.+.+.. ...-+ .++ ..
T Consensus 223 ~~~~~~~~v~~~~~~~ae~-------------------------------------------------~~~~~-~~v-~~ 251 (438)
T 2dpy_A 223 VSPLLRMQGAAYATRIAED-------------------------------------------------FRDRG-QHV-LL 251 (438)
T ss_dssp SCHHHHHHHHHHHHHHHHH-------------------------------------------------HHTTT-CEE-EE
T ss_pred CCHHHHHHHHHHHHHHHHH-------------------------------------------------HHhCC-CCH-HH
Confidence 1112222222222221110 00000 000 00
Q ss_pred cccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcC------Ce-----EEEEEecChhH
Q 044321 302 MVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILE------GT-----ILISLLQPAPE 370 (521)
Q Consensus 302 ~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~------~t-----~ii~i~h~~~~ 370 (521)
.+ +.+..+|+|| |||+|| +.+|++ |++++......+.+++.+.. ++ +|++++|+..
T Consensus 252 ~l--d~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~- 318 (438)
T 2dpy_A 252 IM--DSLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ- 318 (438)
T ss_dssp EE--ECHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-
T ss_pred HH--HhHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-
Confidence 01 1134599999 999999 888887 88888888777777765542 42 6666778776
Q ss_pred HHhhcCeEEEEeCCEEEEecCHhHH
Q 044321 371 TYDLFDDIILISNGHIVYQGPREYV 395 (521)
Q Consensus 371 ~~~l~D~VivL~~G~iv~~G~~~~v 395 (521)
..+||++++|.+|+|+..|++.++
T Consensus 319 -~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 319 -DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp -CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred -chhhceEEEEeCcEEEEeCCHHHc
Confidence 678999999999999999988776
No 89
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.61 E-value=2.7e-15 Score=171.89 Aligned_cols=104 Identities=21% Similarity=0.248 Sum_probs=84.2
Q ss_pred HHHHHHcCCCcc-ccccccCccCCCCChHHHHHHHHHHHHcCCCc--EEEEeCCChhhHHHHHHHHHHHHHHc--CCeEE
Q 044321 287 DYILKILGLDVC-ADTMVGDEILRGISGGQRKRVTTGEMLVGPAQ--ALFMDEISNSTTFQIVNSLRQFIHIL--EGTIL 361 (521)
Q Consensus 287 ~~iL~~lgL~~~-~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~--iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~i 361 (521)
...|..+||... .++.++ .|||||||||+||++|+.+|+ +|||||||++++....+.|.++++.+ .+.+|
T Consensus 445 ~~~L~~vgL~~l~l~r~~~-----~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tv 519 (916)
T 3pih_A 445 LEFLVDVGLEYLTLSRSAT-----TLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTV 519 (916)
T ss_dssp HHHHHTTTCTTCBTTSBGG-----GCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEE
T ss_pred HHHHHHcCCccccccCCcc-----cCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEE
Confidence 346778999754 465554 599999999999999999887 99999999998877777666666554 24566
Q ss_pred EEEecChhHHHhhcCeEEEE------eCCEEEEecCHhHHH
Q 044321 362 ISLLQPAPETYDLFDDIILI------SNGHIVYQGPREYVL 396 (521)
Q Consensus 362 i~i~h~~~~~~~l~D~VivL------~~G~iv~~G~~~~v~ 396 (521)
|+++|+...+ ..||+|++| ++|++++.|+++++.
T Consensus 520 ivVtHd~~~~-~~aD~ii~lgpgag~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 520 IVVEHDEEVI-RNADHIIDIGPGGGTNGGRVVFQGTVDELL 559 (916)
T ss_dssp EEECCCHHHH-HTCSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred EEEeCCHHHH-HhCCEEEEEcCCcccCCCEEEEeechhhhh
Confidence 6678887655 569999999 899999999999875
No 90
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.59 E-value=1.3e-15 Score=174.64 Aligned_cols=141 Identities=11% Similarity=0.064 Sum_probs=85.0
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEM 249 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~ 249 (521)
...|++||||.+++|++++|+||||||||||||+|++..... ....+++.....++.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a-q~g~~vpa~~~~i~~---------------------- 715 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA-QIGSYVPAEEATIGI---------------------- 715 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-HHTCCBSSSEEEEEC----------------------
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-hcCccccchhhhhhH----------------------
Confidence 356999999999999999999999999999999998632100 000112211110000
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCC
Q 044321 250 LAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPA 329 (521)
Q Consensus 250 ~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P 329 (521)
++.++..+|+.+.... ....+|+||+|++.|+++ +.+|
T Consensus 716 ------------------------------------~d~i~~~ig~~d~l~~-----~~stfs~em~~~~~il~~-a~~p 753 (918)
T 3thx_B 716 ------------------------------------VDGIFTRMGAADNIYK-----GRSTFMEELTDTAEIIRK-ATSQ 753 (918)
T ss_dssp ------------------------------------CSEEEEEC---------------CCHHHHHHHHHHHHHH-CCTT
T ss_pred ------------------------------------HHHHHHhCChHHHHHH-----hHHHhhHHHHHHHHHHHh-ccCC
Confidence 0001112222221111 234699999999999998 8999
Q ss_pred cEEEEeCCChhhHHHHHHHH-----HHHHHHcCCeEEEEEecChhHHHhhcCe
Q 044321 330 QALFMDEISNSTTFQIVNSL-----RQFIHILEGTILISLLQPAPETYDLFDD 377 (521)
Q Consensus 330 ~iLlLDEPTs~~~~~i~~~L-----~~l~~~~~~t~ii~i~h~~~~~~~l~D~ 377 (521)
+++|||||++++|......+ ..+.+. .+++++++||+. ++.+++|+
T Consensus 754 ~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~-~g~tvl~vTH~~-el~~l~~~ 804 (918)
T 3thx_B 754 SLVILDELGRGTSTHDGIAIAYATLEYFIRD-VKSLTLFVTHYP-PVCELEKN 804 (918)
T ss_dssp CEEEEESTTTTSCHHHHHHHHHHHHHHHHHT-TCCEEEEECSCG-GGGGHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHh-cCCeEEEEeCcH-HHHHHHhh
Confidence 99999999999887533333 333222 345555566765 44456654
No 91
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.59 E-value=5.8e-15 Score=141.57 Aligned_cols=147 Identities=18% Similarity=0.196 Sum_probs=84.2
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC------CCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHH
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS------LKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAE 252 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~------~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~ 252 (521)
+-|++|++++|+||||||||||+++|+|.+.+. .....|+...+. .. .+.+.+..+..+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~----~~-~~~i~~~~~~~~~--------- 85 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT----FR-PERIREIAQNRGL--------- 85 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC----CC-HHHHHHHHHHTTS---------
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC----CC-HHHHHHHHHHcCC---------
Confidence 479999999999999999999999999955442 112344444321 11 1122221111000
Q ss_pred HHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHH-HHHHHHHHHcC----
Q 044321 253 LTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQR-KRVTTGEMLVG---- 327 (521)
Q Consensus 253 l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqr-QRvaIAraLv~---- 327 (521)
. .+.+++.+.+ ....+++++ +.+..+..++.
T Consensus 86 ----------~----------------------~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (231)
T 4a74_A 86 ----------D----------------------PDEVLKHIYV------------ARAFNSNHQMLLVQQAEDKIKELLN 121 (231)
T ss_dssp ----------C----------------------HHHHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHHTT
T ss_pred ----------C----------------------HHHHhhcEEE------------EecCChHHHHHHHHHHHHHHHHhcc
Confidence 0 0011221111 112444443 33555555554
Q ss_pred ---CCcEEEEeCCChhhHH----------------HHHHHHHHHHHHcCCeEEEEEecChh----HHHhhcCeEEEEeCC
Q 044321 328 ---PAQALFMDEISNSTTF----------------QIVNSLRQFIHILEGTILISLLQPAP----ETYDLFDDIILISNG 384 (521)
Q Consensus 328 ---~P~iLlLDEPTs~~~~----------------~i~~~L~~l~~~~~~t~ii~i~h~~~----~~~~l~D~VivL~~G 384 (521)
+|+++++|||++.++. ++++.|.+++++.+.|+| +++|... .+...+|.+++|++|
T Consensus 122 ~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi-~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 122 TDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVF-VTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp SSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEE-EEEECC---------CCSEEEEEEEC
T ss_pred cCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEE-EEeecccCcchhhHhhceEEEEEEec
Confidence 9999999999996554 566677777665455554 4566333 477899999999875
No 92
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.58 E-value=4.8e-15 Score=169.19 Aligned_cols=102 Identities=24% Similarity=0.272 Sum_probs=80.0
Q ss_pred HHHHcCCCcc-ccccccCccCCCCChHHHHHHHHHHHHcCCC--cEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEE
Q 044321 289 ILKILGLDVC-ADTMVGDEILRGISGGQRKRVTTGEMLVGPA--QALFMDEISNSTTFQIVNSLRQFIHIL--EGTILIS 363 (521)
Q Consensus 289 iL~~lgL~~~-~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P--~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~ 363 (521)
.|..+||... .++.++ +|||||+|||.||++|..+| ++|||||||++++..-.+.|.++++.+ .+.+||+
T Consensus 487 ~L~~vGL~~l~ldR~~~-----tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIv 561 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIV 561 (972)
T ss_dssp HHHHHTCTTSBSSSBGG-----GCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEE
T ss_pred HhhhCCCCccccCCccc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 5889999864 576665 59999999999999999985 999999999988765544444443322 3455666
Q ss_pred EecChhHHHhhcCeEEEE------eCCEEEEecCHhHHH
Q 044321 364 LLQPAPETYDLFDDIILI------SNGHIVYQGPREYVL 396 (521)
Q Consensus 364 i~h~~~~~~~l~D~VivL------~~G~iv~~G~~~~v~ 396 (521)
++|+.+.+ ..||+|++| ++|++++.|+++++.
T Consensus 562 VeHdl~~i-~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 562 VEHDEDTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp ECCCHHHH-HSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred EecCHHHH-HhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 77887654 679999999 799999999998764
No 93
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.58 E-value=1.3e-15 Score=172.18 Aligned_cols=132 Identities=15% Similarity=0.112 Sum_probs=82.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC-CCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHH
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD-SSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEM 249 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~-~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~ 249 (521)
..+++||||. |++++|+||||||||||||+|+|+.. +.. ..+++.....++ .+.+
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~--G~~vpa~~~~i~---------------~v~~---- 621 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQV--GSFVPAEEAHLP---------------LFDG---- 621 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTT--TCCBSSSEEEEC---------------CCSE----
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhccc--Cceeehhcccee---------------eHHH----
Confidence 4689999999 99999999999999999999999642 211 112221100000 0000
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHH--cC
Q 044321 250 LAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEML--VG 327 (521)
Q Consensus 250 ~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraL--v~ 327 (521)
++..++.. +....++|+|+++++.+++++ +.
T Consensus 622 ---------------------------------------i~~~~~~~--------d~l~~g~S~~~~e~~~la~il~~a~ 654 (765)
T 1ewq_A 622 ---------------------------------------IYTRIGAS--------DDLAGGKSTFMVEMEEVALILKEAT 654 (765)
T ss_dssp ---------------------------------------EEEECCC--------------CCSHHHHHHHHHHHHHHHCC
T ss_pred ---------------------------------------hhccCCHH--------HHHHhcccHHHHHHHHHHHHHHhcc
Confidence 00001111 111235899999999999999 99
Q ss_pred CCcEEEEeCC---ChhhHHHHH-HHHHHHHHHcCCeEEEEEecChhHHHhhc
Q 044321 328 PAQALFMDEI---SNSTTFQIV-NSLRQFIHILEGTILISLLQPAPETYDLF 375 (521)
Q Consensus 328 ~P~iLlLDEP---Ts~~~~~i~-~~L~~l~~~~~~t~ii~i~h~~~~~~~l~ 375 (521)
+|+++||||| |+++|.... ..+.+.+...+.+ ++++||+.+. ..++
T Consensus 655 ~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~-vl~~TH~~~l-~~~~ 704 (765)
T 1ewq_A 655 ENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAY-TLFATHYFEL-TALG 704 (765)
T ss_dssp TTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCE-EEEECCCHHH-HTCC
T ss_pred CCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCE-EEEEeCCHHH-HHhh
Confidence 9999999999 887776543 3344444443444 4555676543 4454
No 94
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.57 E-value=1.1e-14 Score=166.92 Aligned_cols=107 Identities=22% Similarity=0.244 Sum_probs=83.7
Q ss_pred hHHHHHHHHcCCCcc-ccccccCccCCCCChHHHHHHHHHHHHcCC--CcEEEEeCCChhhHHHHHHHHHHHHHHc--CC
Q 044321 284 VITDYILKILGLDVC-ADTMVGDEILRGISGGQRKRVTTGEMLVGP--AQALFMDEISNSTTFQIVNSLRQFIHIL--EG 358 (521)
Q Consensus 284 ~~~~~iL~~lgL~~~-~dt~vg~~~~r~LSGGqrQRvaIAraLv~~--P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~ 358 (521)
.+++ .|..+||... .++.++ +|||||||||.||++|..+ |++|||||||++++..-.+.|.++++.+ .+
T Consensus 500 ~Rl~-~L~~vGL~~l~l~r~~~-----tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G 573 (993)
T 2ygr_A 500 SRLG-FLLDVGLEYLSLSRAAA-----TLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLG 573 (993)
T ss_dssp HHHH-HHHHHTGGGSCTTCBGG-----GCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHH-HHhhCCCCccccCCCcc-----cCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcC
Confidence 3443 4788999854 566655 5999999999999999998 5899999999998876666655554432 34
Q ss_pred eEEEEEecChhHHHhhcCeEEEE------eCCEEEEecCHhHHHH
Q 044321 359 TILISLLQPAPETYDLFDDIILI------SNGHIVYQGPREYVLE 397 (521)
Q Consensus 359 t~ii~i~h~~~~~~~l~D~VivL------~~G~iv~~G~~~~v~~ 397 (521)
.+||+++|+.+. ...||+|++| ++|++++.|+++++..
T Consensus 574 ~TVIvVeHdl~~-i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 574 NTLIVVEHDEDT-IEHADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp CEEEEECCCHHH-HHTCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred CEEEEECCCHHH-HHhCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 556667788765 4689999999 7999999999998764
No 95
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.55 E-value=1.6e-15 Score=147.35 Aligned_cols=70 Identities=10% Similarity=0.051 Sum_probs=43.5
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhH-----HH----HHHHHHHHHHHcCCeEEEEEecChhHH---------H
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTT-----FQ----IVNSLRQFIHILEGTILISLLQPAPET---------Y 372 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~-----~~----i~~~L~~l~~~~~~t~ii~i~h~~~~~---------~ 372 (521)
.+-++......+..-..+|+++++||||+.++ .. +.+.++.+ ++.+. +|++++|+..++ .
T Consensus 118 ~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l-~~~g~-tii~vtH~~~~~~~~~~~~~i~ 195 (251)
T 2ehv_A 118 FNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTIL-LEMGV-TTILTTEAPDPQHGKLSRYGIE 195 (251)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHH-HHHCC-EEEEEECCC----CCSSSSSCG
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHH-HHCCC-eEEEEECCCCCCcccccccChh
Confidence 34455555555555568999999999999775 33 33333333 33344 455566776676 6
Q ss_pred hhc-CeEEEEe
Q 044321 373 DLF-DDIILIS 382 (521)
Q Consensus 373 ~l~-D~VivL~ 382 (521)
.+| |+|++|+
T Consensus 196 ~~~aD~vi~l~ 206 (251)
T 2ehv_A 196 EFIARGVIVLD 206 (251)
T ss_dssp GGGCSEEEEEE
T ss_pred hEeeeEEEEEe
Confidence 788 9999995
No 96
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.55 E-value=1.7e-17 Score=158.21 Aligned_cols=141 Identities=13% Similarity=0.027 Sum_probs=94.0
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCcccc--CCCCHHHHHHHHHHhccCchhhHHHHHHHHHHH
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHI--GEMTVRETLAFSARCQGVGSRYEMLAELTRREK 258 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~--~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~ 258 (521)
.++|++++|+||||||||||+++|+|++.+ ..++++|++.++ ..+|+.+++.+..... ..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~---~~------------ 64 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHYYKDLGHLPLEERLRVNYDHP---DA------------ 64 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGCBCCCTTSCHHHHHHSCTTSG---GG------------
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCccccCcccccHHHhcCCCCCCh---hh------------
Confidence 578999999999999999999999998754 347888887665 5678888765431100 00
Q ss_pred hcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHH----HHHHHHHHHcCCCcEEEE
Q 044321 259 AAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQR----KRVTTGEMLVGPAQALFM 334 (521)
Q Consensus 259 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqr----QRvaIAraLv~~P~iLlL 334 (521)
........+++.+++.+..+.++ ..+|+||+ ||+++|++++.+|.++++
T Consensus 65 ----------------------~~~~~~~~~l~~~~~~~~~~~~~-----~~~s~g~~~~~~~~~~~~~~li~~~~ll~~ 117 (211)
T 3asz_A 65 ----------------------FDLALYLEHAQALLRGLPVEMPV-----YDFRAYTRSPRRTPVRPAPVVILEGILVLY 117 (211)
T ss_dssp ----------------------BCHHHHHHHHHHHHTTCCEEECC-----EETTTTEECSSCEEECCCSEEEEESTTTTS
T ss_pred ----------------------hhHHHHHHHHHHHHcCCCcCCCc-----ccCcccCCCCCeEEeCCCcEEEEeehhhcc
Confidence 00112344566677766555443 35999964 788999999999999999
Q ss_pred eCCChh-------hHH----HHHHHHHHHHHHcCCeEEEEEec
Q 044321 335 DEISNS-------TTF----QIVNSLRQFIHILEGTILISLLQ 366 (521)
Q Consensus 335 DEPTs~-------~~~----~i~~~L~~l~~~~~~t~ii~i~h 366 (521)
||||++ ++. .+.+.+.+.....+.|++.++|+
T Consensus 118 de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 118 PKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp SHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred CHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999886 443 44555554433335555554443
No 97
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.54 E-value=1.7e-16 Score=164.13 Aligned_cols=184 Identities=15% Similarity=0.182 Sum_probs=108.8
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEM 249 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~ 249 (521)
...+|+++ |.|.+|++++|+||||||||||+++|+|...++......+.+.. -.+.+.+.. ... .
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~-----~ev~~~i~~------~~~--~- 122 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERG-----REVNEFLAL------LPQ--S- 122 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCH-----HHHHHHHTT------SCH--H-
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccH-----HHHHHHHHh------hhh--h-
Confidence 56799999 99999999999999999999999999999887632222222210 012211111 000 0
Q ss_pred HHHHHHHHHhcCC---CCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHc
Q 044321 250 LAELTRREKAAGI---KPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLV 326 (521)
Q Consensus 250 ~~~l~~~e~~~~i---~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv 326 (521)
.+ ++...+ ...+....+..... .....+ .+...| .+..+--+.+..||+|| |||++| +
T Consensus 123 --~~---~~~v~~~~~~~~~~~~r~~~~~~-----~~~~ae-~~~~~~----~~vl~~ld~~~~lS~g~-r~v~la---l 183 (347)
T 2obl_A 123 --TL---SKCVLVVTTSDRPALERMKAAFT-----ATTIAE-YFRDQG----KNVLLMMDSVTRYARAA-RDVGLA---S 183 (347)
T ss_dssp --HH---TTEEEEEECTTSCHHHHHHHHHH-----HHHHHH-HHHTTT----CEEEEEEETHHHHHHHH-HHHHHH---T
T ss_pred --hh---hceEEEEECCCCCHHHHHHHHHH-----HHHHHH-HHHhcc----ccHHHHHhhHHHHHHHH-HHHHHH---c
Confidence 00 000000 00000000000000 000001 111111 11100002244699999 899999 5
Q ss_pred CCCcEEEEeCCChhhHHHHHHHHHHHHHHc----CCe-----EEEEEecChhHHHhhcCeEEEEeCCEEEEecCHhHH
Q 044321 327 GPAQALFMDEISNSTTFQIVNSLRQFIHIL----EGT-----ILISLLQPAPETYDLFDDIILISNGHIVYQGPREYV 395 (521)
Q Consensus 327 ~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~----~~t-----~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G~~~~v 395 (521)
++|++ |++++......+.+++... +++ +|++.+|+.. ..+||++++|.+|+|+..|+.+++
T Consensus 184 ~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 184 GEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp TCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred CCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEeCCHHHc
Confidence 77776 7899999988888887654 255 6777778876 678999999999999999988765
No 98
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.54 E-value=1.8e-14 Score=131.38 Aligned_cols=80 Identities=24% Similarity=0.228 Sum_probs=64.8
Q ss_pred ccCCCCChHHHHHHHHH------HHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc--CCeEEEEEecChhHHHhhcCe
Q 044321 306 EILRGISGGQRKRVTTG------EMLVGPAQALFMDEISNSTTFQIVNSLRQFIHIL--EGTILISLLQPAPETYDLFDD 377 (521)
Q Consensus 306 ~~~r~LSGGqrQRvaIA------raLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~--~~t~ii~i~h~~~~~~~l~D~ 377 (521)
..+..|||||||||+|| ++|+.+|++|||||||+++|....+.+.+++... ++.+|++++|+. ++..+||+
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~d~ 131 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAADH 131 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGCSE
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HHHHhCCE
Confidence 45567999999999876 8999999999999999999998888887777654 244556666776 67789999
Q ss_pred EEEE--eCCEE
Q 044321 378 IILI--SNGHI 386 (521)
Q Consensus 378 VivL--~~G~i 386 (521)
+++| .+|..
T Consensus 132 ii~l~~~~g~s 142 (148)
T 1f2t_B 132 VIRISLENGSS 142 (148)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEcCCCeE
Confidence 9999 46644
No 99
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.54 E-value=4.9e-16 Score=169.16 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=45.0
Q ss_pred CCcceeeeeeEE-EEeCCcEEEEEcCCCChHHHHHHH--HhCCCCCCCCceeeecCCc
Q 044321 168 KKHLTILKDVSG-IIRPGRMTLLLGPPGSVKTTLLLA--LAGKLDSSLKNRCDISQHD 222 (521)
Q Consensus 168 ~~~~~iL~dVS~-~I~~Ge~~~LlGpnGSGKSTLLk~--LaG~l~~~~~~~~~v~q~d 222 (521)
.....+|++||+ .|++|++++|+||||||||||+++ ++|+++|. ....|+...+
T Consensus 22 ~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~-~g~i~v~g~~ 78 (525)
T 1tf7_A 22 RTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD-EPGVFVTFEE 78 (525)
T ss_dssp CCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC-CCEEEEESSS
T ss_pred cCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC-CCEEEEEEeC
Confidence 345679999999 999999999999999999999999 78987654 3456776554
No 100
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.53 E-value=4.4e-14 Score=149.90 Aligned_cols=73 Identities=14% Similarity=0.272 Sum_probs=61.4
Q ss_pred CCCChHHHHHHHHHHHHc----CCCcEEEEeCCChhhHHHHHHHHHHHHHHcC--CeEEEEEecChhHHHhhcCeEEEEe
Q 044321 309 RGISGGQRKRVTTGEMLV----GPAQALFMDEISNSTTFQIVNSLRQFIHILE--GTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv----~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~--~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
..||||||||++||++|+ .+|++|||||||+++|......+.+++.... ++.+|+++|+ ..+...||++++|.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~-~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLK-NTMFEKSDALVGVY 410 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSC-HHHHTTCSEEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECC-HHHHHhCCEEEEEE
Confidence 359999999999999999 6899999999999999998888888876542 4556666676 46678899999986
No 101
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.52 E-value=2e-15 Score=150.20 Aligned_cols=133 Identities=15% Similarity=0.191 Sum_probs=83.7
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHH
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLA 251 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~ 251 (521)
.+|+++| +++|++++|+||||||||||+++|+|+++|...+...+.+++.-+.. +...
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~-------------~~~~------- 72 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF-------------KHKK------- 72 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC-------------CCSS-------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec-------------CCcc-------
Confidence 4899999 89999999999999999999999999887642333444333321100 0000
Q ss_pred HHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcE
Q 044321 252 ELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQA 331 (521)
Q Consensus 252 ~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~i 331 (521)
.+ .. + ..+|+.. ..+ |++||++|..+|++
T Consensus 73 ---------~~--------------v~-q----------~~~gl~~-----------~~l------~~~la~aL~~~p~i 101 (261)
T 2eyu_A 73 ---------SI--------------VN-Q----------REVGEDT-----------KSF------ADALRAALREDPDV 101 (261)
T ss_dssp ---------SE--------------EE-E----------EEBTTTB-----------SCH------HHHHHHHHHHCCSE
T ss_pred ---------ee--------------ee-H----------HHhCCCH-----------HHH------HHHHHHHHhhCCCE
Confidence 00 00 0 0122211 112 89999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeC
Q 044321 332 LFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISN 383 (521)
Q Consensus 332 LlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~ 383 (521)
|++|||| |.+....+.+.+. .+.+ +++++|+.. +...||++++|..
T Consensus 102 lllDEp~---D~~~~~~~l~~~~-~g~~-vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 102 IFVGEMR---DLETVETALRAAE-TGHL-VFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp EEESCCC---SHHHHHHHHHHHH-TTCE-EEEEECCSS-HHHHHHHHHHTSC
T ss_pred EEeCCCC---CHHHHHHHHHHHc-cCCE-EEEEeCcch-HHHHHHHHhhhcC
Confidence 9999999 3333333333332 3444 555566654 6788898887753
No 102
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.51 E-value=4.4e-14 Score=135.15 Aligned_cols=167 Identities=16% Similarity=0.078 Sum_probs=97.2
Q ss_pred ceeeeeeEE-EEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHH
Q 044321 171 LTILKDVSG-IIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEM 249 (521)
Q Consensus 171 ~~iL~dVS~-~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~ 249 (521)
...|+++.+ .+++|++++|+||||||||||++.|++...+......|+..+ .+..+............+..
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~------~~~~~~~~~~~~~~~~~~~~-- 80 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE------ESRDSIIRQAKQFNWDFEEY-- 80 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS------SCHHHHHHHHHHTTCCCGGG--
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc------cCHHHHHHHHHHhcchHHHH--
Confidence 456788885 899999999999999999999999998654332222343322 22222111110110000000
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCC
Q 044321 250 LAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPA 329 (521)
Q Consensus 250 ~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P 329 (521)
... .. ...+.....++ ...+ ....|.++.++...+.+...+|
T Consensus 81 -------------~~~-~~---------------~~~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~ 122 (235)
T 2w0m_A 81 -------------IEK-KL---------------IIIDALMKEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGY 122 (235)
T ss_dssp -------------BTT-TE---------------EEEECCC---------CTTB----CSSCCHHHHHHHHHHHHHHHCS
T ss_pred -------------hhC-CE---------------EEEeccccccC-----ceee----ecCCCHHHHHHHHHHHHHhhCC
Confidence 000 00 00000000011 0011 1235999999888888878899
Q ss_pred c--EEEEeCCChhh--H----HHHHHHHHHHHHHcCCeEEEEEecCh--------hHHHhhcCeEEEEeCC
Q 044321 330 Q--ALFMDEISNST--T----FQIVNSLRQFIHILEGTILISLLQPA--------PETYDLFDDIILISNG 384 (521)
Q Consensus 330 ~--iLlLDEPTs~~--~----~~i~~~L~~l~~~~~~t~ii~i~h~~--------~~~~~l~D~VivL~~G 384 (521)
+ ++++||||+.+ + .++++.|++++++.+ .++++++|.. +.+..+||+|++|+..
T Consensus 123 ~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~-~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 123 GKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWN-FTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp SCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTT-EEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred CceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCC-CeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 9 99999999743 3 567777777766544 5555566766 4588899999999854
No 103
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.48 E-value=1.7e-13 Score=136.71 Aligned_cols=138 Identities=12% Similarity=0.141 Sum_probs=83.4
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC----------CCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHH
Q 044321 180 IIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS----------LKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEM 249 (521)
Q Consensus 180 ~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~----------~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~ 249 (521)
-+++|++++|+||||||||||++.|++.+... .....|+..++ +..+ +. .++...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~------~~~~-~~--~r~~~~------ 90 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED------PPTA-IH--HRLHAL------ 90 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS------CHHH-HH--HHHHHH------
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC------CHHH-HH--HHHHHH------
Confidence 58999999999999999999999999854321 01112333222 1111 10 000000
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCC
Q 044321 250 LAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPA 329 (521)
Q Consensus 250 ~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P 329 (521)
+.. ......+.+++.+++.+..+.. +..||+||++++ ++++.+|
T Consensus 91 -----------g~~-----------------~~~~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~ 134 (279)
T 1nlf_A 91 -----------GAH-----------------LSAEERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGR 134 (279)
T ss_dssp -----------HTT-----------------SCHHHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTC
T ss_pred -----------Hhh-----------------cChhhhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCC
Confidence 000 0001234466777777655443 345999998765 6788899
Q ss_pred cEEEEeCCCh--hhH-------HHHHHHHHHHHHHcCCeEEEEEecChh
Q 044321 330 QALFMDEISN--STT-------FQIVNSLRQFIHILEGTILISLLQPAP 369 (521)
Q Consensus 330 ~iLlLDEPTs--~~~-------~~i~~~L~~l~~~~~~t~ii~i~h~~~ 369 (521)
+++++||||+ +++ .++++.|..++++.+.|+|+ ++|...
T Consensus 135 ~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~-i~H~~~ 182 (279)
T 1nlf_A 135 RLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVF-LHHASK 182 (279)
T ss_dssp SEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEE-EEEC--
T ss_pred CEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEE-EecCCC
Confidence 9999999999 433 45677777776655555555 556543
No 104
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.46 E-value=3.1e-14 Score=161.65 Aligned_cols=145 Identities=13% Similarity=-0.003 Sum_probs=86.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCcc-------ccCCCCHHHHHHHHHHhccC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDV-------HIGEMTVRETLAFSARCQGV 243 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~-------~~~~lTV~E~l~f~~~~~~~ 243 (521)
..+++|+|+. ++|++++|+||||||||||||+|+|+.... ....++++... .+..+++.+++..
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~-q~G~~vpa~~~~i~~~~~i~~~~~~~d~l~~------- 665 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA-YIGSYVPAQKVEIGPIDRIFTRVGAADDLAS------- 665 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH-TTTCCBSSSEEEECCCCEEEEEEC--------------
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH-hcCcccchhcccceeHHHHHhhCCHHHHHHh-------
Confidence 4689999999 999999999999999999999999953211 01123332211 1111111111100
Q ss_pred chhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHH
Q 044321 244 GSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGE 323 (521)
Q Consensus 244 ~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAr 323 (521)
....+|+|+++ ++.+.
T Consensus 666 ---------------------------------------------------------------~~stf~~e~~~-~~~il 681 (800)
T 1wb9_A 666 ---------------------------------------------------------------GRSTFMVEMTE-TANIL 681 (800)
T ss_dssp -------------------------------------------------------------------CHHHHHH-HHHHH
T ss_pred ---------------------------------------------------------------hhhhhhHHHHH-HHHHH
Confidence 01236777664 44445
Q ss_pred HHcCCCcEEEEeCCChhhH---HH-H-HHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCCEEEEec
Q 044321 324 MLVGPAQALFMDEISNSTT---FQ-I-VNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNGHIVYQG 390 (521)
Q Consensus 324 aLv~~P~iLlLDEPTs~~~---~~-i-~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G~iv~~G 390 (521)
.++.+|+++|||||+++++ .. + ...+..+.+ ..+.+++++||+.+ ...+||++..+.+|++.+..
T Consensus 682 ~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~-~~g~~vl~~TH~~e-l~~l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 682 HNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLAN-KIKALTLFATHYFE-LTQLPEKMEGVANVHLDALE 751 (800)
T ss_dssp HHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHH-TTCCEEEEECSCGG-GGGHHHHSTTEEEEEEEEEE
T ss_pred HhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHh-ccCCeEEEEeCCHH-HHHHhhhhhceEEEEEEEEE
Confidence 5689999999999976543 22 2 344444433 22445555667654 45688887777777776544
No 105
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.46 E-value=4.3e-16 Score=147.77 Aligned_cols=81 Identities=12% Similarity=0.147 Sum_probs=58.8
Q ss_pred cCCCCChHHHHHHH-HHH---HHcCCCcEEEEeC--CChhhHHHHHHHHHHHHHHcCCeEEE---EEecChhHHHhhcCe
Q 044321 307 ILRGISGGQRKRVT-TGE---MLVGPAQALFMDE--ISNSTTFQIVNSLRQFIHILEGTILI---SLLQPAPETYDLFDD 377 (521)
Q Consensus 307 ~~r~LSGGqrQRva-IAr---aLv~~P~iLlLDE--PTs~~~~~i~~~L~~l~~~~~~t~ii---~i~h~~~~~~~l~D~ 377 (521)
+...+|||||+++. +++ |++.+|++||+|| |+...+...++.|.+++.. ..++|+ +++|+.+ ..+.|+
T Consensus 80 ~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~-~~~~ilgti~vsh~~~--~~~vd~ 156 (189)
T 2i3b_A 80 YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST-PGTIILGTIPVPKGKP--LALVEE 156 (189)
T ss_dssp SEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC-SSCCEEEECCCCCSSC--CTTHHH
T ss_pred EEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC-CCcEEEEEeecCCCCc--hHHHHH
Confidence 34469999999984 444 5899999999999 6767778889999998874 334443 3336543 346677
Q ss_pred EEEEeCCEEEEec
Q 044321 378 IILISNGHIVYQG 390 (521)
Q Consensus 378 VivL~~G~iv~~G 390 (521)
|..+.+|+|+.-.
T Consensus 157 i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 157 IRNRKDVKVFNVT 169 (189)
T ss_dssp HHTTCCSEEEECC
T ss_pred HeecCCcEEEEeC
Confidence 7777888887643
No 106
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.45 E-value=1.3e-15 Score=154.44 Aligned_cols=145 Identities=14% Similarity=0.098 Sum_probs=76.4
Q ss_pred CCCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCC-CCCCCC---------------ceeeecCCccccCCCC
Q 044321 166 SRKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGK-LDSSLK---------------NRCDISQHDVHIGEMT 229 (521)
Q Consensus 166 ~~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~-l~~~~~---------------~~~~v~q~d~~~~~lT 229 (521)
+.++.+.++++++|.| +|+||||||||||+++|+|. +.+... ..+++.|.+.....+|
T Consensus 6 ~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 6 NQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp ------------CEEE------EEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEE
T ss_pred ceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 3345668999999998 99999999999999999996 443211 1244555555555677
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCC
Q 044321 230 VRETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILR 309 (521)
Q Consensus 230 V~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r 309 (521)
+.++..++.... ..+ ......+.+.+ ..+. +++
T Consensus 80 v~Dt~g~~~~~~-------------~~e-----------------------~~~~l~~~l~~------~~~~-----~~~ 112 (301)
T 2qnr_A 80 VVDTPGYGDAIN-------------CRD-----------------------CFKTIISYIDE------QFER-----YLH 112 (301)
T ss_dssp EEEEC-----------------------------------------------CTTHHHHHHH------HHHH-----HHH
T ss_pred hhhhhhhhhhcC-------------cHH-----------------------HHHHHHHHHHH------HHHH-----HHH
Confidence 777766542110 000 00011122111 1122 234
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCCh-hhHHHHHHHHHHHHHHcCCeEEEEEecCh
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISN-STTFQIVNSLRQFIHILEGTILISLLQPA 368 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs-~~~~~i~~~L~~l~~~~~~t~ii~i~h~~ 368 (521)
++|||||||+.+||+++ +|++||||+ +++..-.+.++++.. ....++|+..|+.
T Consensus 113 ~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~~~l~~l~~-~~~iilV~~K~Dl 167 (301)
T 2qnr_A 113 DESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDVAFMKAIHN-KVNIVPVIAKADT 167 (301)
T ss_dssp HHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHHHHHHHHTT-TSCEEEEECCGGG
T ss_pred HhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHHHHHHHHHh-cCCEEEEEEeCCC
Confidence 59999999999999886 999999998 477766666665532 1245666666665
No 107
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.45 E-value=5.9e-14 Score=145.26 Aligned_cols=163 Identities=20% Similarity=0.204 Sum_probs=89.7
Q ss_pred eeeeee-EEEEeCCcEEEEEcCCCChHHHHHHHHhCCC--CCCC---Cce-eeecCCccccCCCCHHHHHHHHHHhccCc
Q 044321 172 TILKDV-SGIIRPGRMTLLLGPPGSVKTTLLLALAGKL--DSSL---KNR-CDISQHDVHIGEMTVRETLAFSARCQGVG 244 (521)
Q Consensus 172 ~iL~dV-S~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l--~~~~---~~~-~~v~q~d~~~~~lTV~E~l~f~~~~~~~~ 244 (521)
..|+.+ ++.|++|++++|+||||||||||++.|++.. +|.. ... .|+...+.. . .+.+.+.+...+..
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~----~-~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF----R-PERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC----C-HHHHHHHHHTTTCC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC----C-HHHHHHHHHHcCCC
Confidence 345555 6899999999999999999999999999987 3332 133 677665431 1 23333222111100
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHH
Q 044321 245 SRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEM 324 (521)
Q Consensus 245 ~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAra 324 (521)
. +.+++.+-+ ... --|++++|++.++++
T Consensus 193 -----------------------~------------------~~v~~ni~~--------~~~---~~~~~~~~~l~~~~~ 220 (349)
T 1pzn_A 193 -----------------------P------------------DEVLKHIYV--------ARA---FNSNHQMLLVQQAED 220 (349)
T ss_dssp -----------------------H------------------HHHGGGEEE--------EEC---CSHHHHHHHHHHHHH
T ss_pred -----------------------H------------------HHHhhCEEE--------Eec---CChHHHHHHHHHHHH
Confidence 0 011111111 100 125788899999988
Q ss_pred Hc-------CCCcEEEEeCCChhhHHH----------------HHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEE
Q 044321 325 LV-------GPAQALFMDEISNSTTFQ----------------IVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILI 381 (521)
Q Consensus 325 Lv-------~~P~iLlLDEPTs~~~~~----------------i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL 381 (521)
++ .+|++||+||||+.++.. ++..|++++++.+ +++++++|........++....+
T Consensus 221 ~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~-~tvii~~h~~~~~~~~~~~~~~~ 299 (349)
T 1pzn_A 221 KIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYD-IAVFVTNQVQARPDAFFGDPTRP 299 (349)
T ss_dssp HHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTT-CEEEEEEECC-------------
T ss_pred HHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcC-cEEEEEcccccccccccCCcccc
Confidence 88 789999999999976542 3334455544434 45555566555554455666677
Q ss_pred eCCEEEEecCH
Q 044321 382 SNGHIVYQGPR 392 (521)
Q Consensus 382 ~~G~iv~~G~~ 392 (521)
..|+++.++..
T Consensus 300 ~~G~~l~~~~~ 310 (349)
T 1pzn_A 300 IGGHILAHSAT 310 (349)
T ss_dssp --CCCCCTTCS
T ss_pred CCcceEeecCc
Confidence 77777666543
No 108
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.44 E-value=2.8e-13 Score=128.93 Aligned_cols=150 Identities=19% Similarity=0.108 Sum_probs=92.2
Q ss_pred eeeeeeE-EEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHH
Q 044321 172 TILKDVS-GIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEML 250 (521)
Q Consensus 172 ~iL~dVS-~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~ 250 (521)
..|+++. +-+++|++++|+||||||||||++.|++ . ......|+..+.. .+.. .+.-...
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~~~~~----~~~~-~~~~~~~----------- 67 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-SGKKVAYVDTEGG----FSPE-RLVQMAE----------- 67 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEESSCC----CCHH-HHHHHHH-----------
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEECCCC----CCHH-HHHHHHH-----------
Confidence 4566665 4799999999999999999999999998 2 2223355544321 1111 1100000
Q ss_pred HHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHH--HHHHHHHHHHcCC
Q 044321 251 AELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQ--RKRVTTGEMLVGP 328 (521)
Q Consensus 251 ~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGq--rQRvaIAraLv~~ 328 (521)
..++ + .+.+++.+. +. ..|+++ ++++..+++++.+
T Consensus 68 --------~~~~----~------------------~~~~~~~~~--------~~-----~~~~~~~~~~~~~~~~~l~~~ 104 (220)
T 2cvh_A 68 --------TRGL----N------------------PEEALSRFI--------LF-----TPSDFKEQRRVIGSLKKTVDS 104 (220)
T ss_dssp --------TTTC----C------------------HHHHHHHEE--------EE-----CCTTTSHHHHHHHHHHHHCCT
T ss_pred --------hcCC----C------------------hHHHhhcEE--------EE-----ecCCHHHHHHHHHHHHHHhhc
Confidence 0000 0 011222211 11 245554 5688888999986
Q ss_pred -CcEEEEeCCChhhH------------HHHHHHHHHHHHHcCCeEEEEEecChh-------------HHHhhcCeEEEEe
Q 044321 329 -AQALFMDEISNSTT------------FQIVNSLRQFIHILEGTILISLLQPAP-------------ETYDLFDDIILIS 382 (521)
Q Consensus 329 -P~iLlLDEPTs~~~------------~~i~~~L~~l~~~~~~t~ii~i~h~~~-------------~~~~l~D~VivL~ 382 (521)
|+++++||||+.++ .++++.|++++++.+.++|++ +|... .+...||.|++|+
T Consensus 105 ~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~-~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~ 183 (220)
T 2cvh_A 105 NFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVI-NQVHFDSRTEMTKPVAEQTLGYRCKDILRLD 183 (220)
T ss_dssp TEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEE-ECSSSSCTTSSCCSCCCHHHHHTSSEEEEEE
T ss_pred CCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEE-eeEEEcCCCCccccCCCcceeecCcEEEEEE
Confidence 99999999999543 234555777776666666655 45433 4678999999997
Q ss_pred CC
Q 044321 383 NG 384 (521)
Q Consensus 383 ~G 384 (521)
..
T Consensus 184 ~~ 185 (220)
T 2cvh_A 184 KL 185 (220)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 109
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.44 E-value=5.2e-14 Score=142.99 Aligned_cols=53 Identities=9% Similarity=0.030 Sum_probs=36.8
Q ss_pred CChHHHHHHHHHHHHcCCCc--EEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEec
Q 044321 311 ISGGQRKRVTTGEMLVGPAQ--ALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQ 366 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~--iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h 366 (521)
++..++||++|||+++.+|+ +|.|| |+++. ++++.++.+.+..+.|+|+++|.
T Consensus 203 ~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~--~~~~~~~~~~~~~~~t~iivTh~ 257 (304)
T 1rj9_A 203 MEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQ--NGLEQAKKFHEAVGLTGVIVTKL 257 (304)
T ss_dssp HHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCT--HHHHHHHHHHHHHCCSEEEEECT
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHH--HHHHHHHHHHHHcCCcEEEEECC
Confidence 45566999999999999999 78888 55543 35555566554446666665543
No 110
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.41 E-value=2.9e-14 Score=150.78 Aligned_cols=138 Identities=12% Similarity=0.065 Sum_probs=80.9
Q ss_pred CCCcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC---------------ceeeecCCccccCCCCHH
Q 044321 167 RKKHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK---------------NRCDISQHDVHIGEMTVR 231 (521)
Q Consensus 167 ~~~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~---------------~~~~v~q~d~~~~~lTV~ 231 (521)
.++.+.+++|+||.| +|+||||||||||+++|+|...+... ..+++.|.+..+..+||.
T Consensus 20 ~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~ 93 (418)
T 2qag_C 20 QVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIV 93 (418)
T ss_dssp CTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEE
T ss_pred eECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeee
Confidence 334567999999998 99999999999999999998653110 124556666666678888
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCC
Q 044321 232 ETLAFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGI 311 (521)
Q Consensus 232 E~l~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~L 311 (521)
+|+.|+..... .. . ...+.+++ + ..+
T Consensus 94 Dt~g~~~~~~~-------------~~---------~--------------~~~i~~~i-~-----------------~~~ 119 (418)
T 2qag_C 94 DTPGFGDAVDN-------------SN---------C--------------WQPVIDYI-D-----------------SKF 119 (418)
T ss_dssp ECC-----------------------------------------------CHHHHHHH-H-----------------HHH
T ss_pred echhhhhhccc-------------hh---------h--------------HHHHHHHH-H-----------------HHH
Confidence 88776532100 00 0 00011111 1 025
Q ss_pred ChHHHHHHHHHHHHcCCCc---EEEEeCCC-hhhHHHHHHHHHHHHHHcCCeEEEEEec
Q 044321 312 SGGQRKRVTTGEMLVGPAQ---ALFMDEIS-NSTTFQIVNSLRQFIHILEGTILISLLQ 366 (521)
Q Consensus 312 SGGqrQRvaIAraLv~~P~---iLlLDEPT-s~~~~~i~~~L~~l~~~~~~t~ii~i~h 366 (521)
+.+++||++|||+++.+|+ +|++|||| .+++..-...++.+. .+.++|+++++
T Consensus 120 ~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~--~~v~iIlVinK 176 (418)
T 2qag_C 120 EDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH--EKVNIIPLIAK 176 (418)
T ss_dssp HHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT--TTSEEEEEEES
T ss_pred HHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh--ccCcEEEEEEc
Confidence 6677889999999999999 99999999 466655555555543 24566666655
No 111
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.39 E-value=4.8e-14 Score=146.29 Aligned_cols=59 Identities=7% Similarity=0.128 Sum_probs=43.8
Q ss_pred HHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCeEEEEeCC
Q 044321 320 TTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLFDDIILISNG 384 (521)
Q Consensus 320 aIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~VivL~~G 384 (521)
+||+||..+|++|++|||+. .+..+.+.++.. .|.+ +++++|....+ ..+|+++.|..|
T Consensus 188 ~La~aL~~~PdvillDEp~d---~e~~~~~~~~~~-~G~~-vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMRD---LETIRLALTAAE-TGHL-VFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCCS---HHHHHHHHHHHH-TTCE-EEEEESCSSHH-HHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCCC---HHHHHHHHHHHh-cCCE-EEEEEccChHH-HHHHHHhhhcCc
Confidence 89999999999999999994 555555555543 3555 55566766555 789999988554
No 112
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.35 E-value=5.8e-12 Score=117.67 Aligned_cols=88 Identities=20% Similarity=0.227 Sum_probs=65.0
Q ss_pred CCCCChHHHHHHHHHHHHc----CCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 308 LRGISGGQRKRVTTGEMLV----GPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 308 ~r~LSGGqrQRvaIAraLv----~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
+..||||||||++||++|+ .+|+++||||||+++|......+.++++.. ..+.+|+++|+. .+...||+++.+.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~-~~~~~ad~i~~v~ 140 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRD-VMMANADKIIGVS 140 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCH-HHHTTCSEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecH-HHHHhCCEEEEEE
Confidence 4569999999999999996 567999999999999998888877777654 334455555654 5678999998664
Q ss_pred --CCEE-EEecCHhHHH
Q 044321 383 --NGHI-VYQGPREYVL 396 (521)
Q Consensus 383 --~G~i-v~~G~~~~v~ 396 (521)
+|.. +.....++..
T Consensus 141 ~~~g~s~~~~~~~~~~~ 157 (173)
T 3kta_B 141 MRDGVSKVVSLSLEKAM 157 (173)
T ss_dssp EETTEEEEEECCHHHHH
T ss_pred ecCCEEEEEEEEcHHHH
Confidence 6654 3334444443
No 113
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.24 E-value=1.4e-13 Score=152.36 Aligned_cols=147 Identities=14% Similarity=0.102 Sum_probs=86.3
Q ss_pred EEEEcCCCChHHHHHHHHhCCCCCC-CC----------------------ceeeecCCccccCCCCHHHHHHHHHHhccC
Q 044321 187 TLLLGPPGSVKTTLLLALAGKLDSS-LK----------------------NRCDISQHDVHIGEMTVRETLAFSARCQGV 243 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~l~~~-~~----------------------~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~ 243 (521)
++|+|||||||||||++|+|++.|. .+ ..+|++|+..+++.+||++++.++....+
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~- 126 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA- 126 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH-
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc-
Confidence 9999999999999999999998662 11 01566777667777888888776532110
Q ss_pred chhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHH
Q 044321 244 GSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGE 323 (521)
Q Consensus 244 ~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAr 323 (521)
... .++| ++++.++.
T Consensus 127 ---------------------------------------------------~~~-----------~~~s---~~~i~l~i 141 (608)
T 3szr_A 127 ---------------------------------------------------GEG-----------MGIS---HELITLEI 141 (608)
T ss_dssp ---------------------------------------------------CSS-----------SCCC---SCCEEEEE
T ss_pred ---------------------------------------------------CCc-----------cccc---hHHHHHHh
Confidence 000 0011 11122222
Q ss_pred HHcCCCcEEEEeCC------ChhhHHHHHHHHHHHHHH----cCCeEEEEEecChhH----HHhh--------cCeEEEE
Q 044321 324 MLVGPAQALFMDEI------SNSTTFQIVNSLRQFIHI----LEGTILISLLQPAPE----TYDL--------FDDIILI 381 (521)
Q Consensus 324 aLv~~P~iLlLDEP------Ts~~~~~i~~~L~~l~~~----~~~t~ii~i~h~~~~----~~~l--------~D~VivL 381 (521)
+....|+++|+||| |++++......+.+++.. ....++++++|+.+. +.++ ...|+|+
T Consensus 142 ~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~Vl 221 (608)
T 3szr_A 142 SSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGIL 221 (608)
T ss_dssp EESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEE
T ss_pred cCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEe
Confidence 33458999999999 887665555555554443 235666777776541 2222 2468899
Q ss_pred eCCEEEEecCHhHHHHHH
Q 044321 382 SNGHIVYQGPREYVLEFF 399 (521)
Q Consensus 382 ~~G~iv~~G~~~~v~~~f 399 (521)
.++.++..|+.+++.+++
T Consensus 222 TK~Dlv~~g~~~~~~~~l 239 (608)
T 3szr_A 222 TKPDLVDKGTEDKVVDVV 239 (608)
T ss_dssp ECGGGSSSSSTTCCCCCC
T ss_pred cchhhcCcccHHHHHHHH
Confidence 998888777765554333
No 114
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.22 E-value=7e-11 Score=113.97 Aligned_cols=28 Identities=32% Similarity=0.338 Sum_probs=26.7
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
+-|++|++++|+||||||||||++.|++
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999999999999999
No 115
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.22 E-value=2.3e-12 Score=136.16 Aligned_cols=153 Identities=12% Similarity=0.051 Sum_probs=89.5
Q ss_pred CcceeeeeeEEEEeCCcE--EEEEcCCCChHHHHHHHHhCCCCC--C-----C----CceeeecCCccccCCCCHHHHHH
Q 044321 169 KHLTILKDVSGIIRPGRM--TLLLGPPGSVKTTLLLALAGKLDS--S-----L----KNRCDISQHDVHIGEMTVRETLA 235 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~--~~LlGpnGSGKSTLLk~LaG~l~~--~-----~----~~~~~v~q~d~~~~~lTV~E~l~ 235 (521)
+..+ |++||++|++|++ ++|+||||||||||+++|+|..-. . . ...+|++|...+++.+||.+|+.
T Consensus 26 ~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~ 104 (427)
T 2qag_B 26 DSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVG 104 (427)
T ss_dssp C--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEEC
T ss_pred CCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhh
Confidence 4445 9999999999999 999999999999999999997411 0 0 12377888877778899999887
Q ss_pred HHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHc-CCCc----ccccc----cc--
Q 044321 236 FSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKIL-GLDV----CADTM----VG-- 304 (521)
Q Consensus 236 f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~l-gL~~----~~dt~----vg-- 304 (521)
|+.... . ......+. .......+.+|... ++.. ..|+. +.
T Consensus 105 ~g~~~~---~-~~~~~~i~-------------------------~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI 155 (427)
T 2qag_B 105 FGDQIN---K-EDSYKPIV-------------------------EFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFI 155 (427)
T ss_dssp CCC-CC---H-HHHSHHHH-------------------------HHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEE
T ss_pred hhhccc---c-chhhhHHH-------------------------HHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEE
Confidence 753210 0 00000000 00111223334333 4331 12222 10
Q ss_pred CccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHH
Q 044321 305 DEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIH 354 (521)
Q Consensus 305 ~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~ 354 (521)
.+...+|+-.+ +.|+++|..+++++++|||+..++..-+..+.+.+.
T Consensus 156 ~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~ 202 (427)
T 2qag_B 156 APTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKIT 202 (427)
T ss_dssp CCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHH
T ss_pred eCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHH
Confidence 01123577666 789999999999999999999766554444444443
No 116
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.21 E-value=1.2e-12 Score=135.96 Aligned_cols=39 Identities=26% Similarity=0.343 Sum_probs=36.0
Q ss_pred eeeeeEEEEeC--CcEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 173 ILKDVSGIIRP--GRMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 173 iL~dVS~~I~~--Ge~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
+.+.|++.|.+ |+.++|+||||||||||+++|+|++.++
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 35679999999 9999999999999999999999998875
No 117
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.20 E-value=1.7e-12 Score=125.74 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=26.9
Q ss_pred EEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 178 SGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 178 S~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
.-..++|++++|+||||||||||+++|+|.++|
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 346789999999999999999999999998875
No 118
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.20 E-value=7.9e-13 Score=124.87 Aligned_cols=61 Identities=21% Similarity=0.023 Sum_probs=43.3
Q ss_pred HHHHHcCCCcc-ccccccCccCCCCChHHHHH-HHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHH
Q 044321 288 YILKILGLDVC-ADTMVGDEILRGISGGQRKR-VTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFI 353 (521)
Q Consensus 288 ~iL~~lgL~~~-~dt~vg~~~~r~LSGGqrQR-vaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~ 353 (521)
.++...+++.. ..+++ ..+|+||+|| +..+++++.+|.++++|||||+++...++.+.+.+
T Consensus 131 ~~~~~~~~~~~~v~nK~-----D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l 193 (210)
T 1pui_A 131 EWAVDSNIAVLVLLTKA-----DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKL 193 (210)
T ss_dssp HHHHHTTCCEEEEEECG-----GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHH
T ss_pred HHHHHcCCCeEEEEecc-----cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHH
Confidence 34556676543 13333 3499999999 89999999999989999999987665444444443
No 119
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.20 E-value=1.5e-11 Score=133.58 Aligned_cols=77 Identities=16% Similarity=0.126 Sum_probs=57.9
Q ss_pred cCCCC-ChHHHHHHHHHHHHcCCC--cEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChhHHHhhcCeEEEEe
Q 044321 307 ILRGI-SGGQRKRVTTGEMLVGPA--QALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 307 ~~r~L-SGGqrQRvaIAraLv~~P--~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
.+..| ||||||||+||++|+.+| ++|||||||+++|......+.+++..+ .+.+||+++|+.. +...||++++|+
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~-~~~~~d~~~~~~ 471 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQ-IAARAHHHYKVE 471 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHH-HHHHSSEEEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhCCEEEEEe
Confidence 45667 999999999999999999 999999999987765555544444322 1345555667755 556799999996
Q ss_pred CC
Q 044321 383 NG 384 (521)
Q Consensus 383 ~G 384 (521)
+|
T Consensus 472 ~~ 473 (517)
T 4ad8_A 472 KQ 473 (517)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 120
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.18 E-value=1e-12 Score=132.54 Aligned_cols=131 Identities=15% Similarity=0.119 Sum_probs=77.8
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCCCCC---CCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHH
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKLDSS---LKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREK 258 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~---~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~ 258 (521)
+++.+++|.||+|||||||.+.|++++.+. .....+|+|++.+++ .++++++.+...-.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~-~~~~~~l~~~~~~~~l~~~------------ 95 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLT-HEDQLKLNEQFKNNKLLQG------------ 95 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCC-HHHHHHHHHHTTTCGGGSS------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCC-hHHHHHHhccccccchhhh------------
Confidence 357899999999999999999999987642 122344488877664 5788888775210000000
Q ss_pred hcCCCCCC-ChHHHHHHHhhhchhhhhHHHHHHHHcCCC--c--cccccccCccCCCCChHHHHHHHHHHHHcCCCcEEE
Q 044321 259 AAGIKPDP-DIDVFMKAAATEGQEVSVITDYILKILGLD--V--CADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALF 333 (521)
Q Consensus 259 ~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~--~--~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLl 333 (521)
.+ .|+. +.+ .....++.+.-. . .....+. .+...+||||+||+.+|++.+.+|+|||
T Consensus 96 -~g-~p~a~d~~---------------~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~~~~IlI 157 (290)
T 1odf_A 96 -RG-LPGTHDMK---------------LLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKLPVDIFI 157 (290)
T ss_dssp -SC-STTSBCHH---------------HHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEESSCSEEE
T ss_pred -cc-CcchhHHH---------------HHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEcCCCEEE
Confidence 00 0111 111 112234443221 0 0111111 2346799999999999833333999999
Q ss_pred EeCCChhhHH
Q 044321 334 MDEISNSTTF 343 (521)
Q Consensus 334 LDEPTs~~~~ 343 (521)
+||++++++.
T Consensus 158 lEG~~~~ld~ 167 (290)
T 1odf_A 158 LEGWFLGFNP 167 (290)
T ss_dssp EEESSTTCCC
T ss_pred EeCccccCCc
Confidence 9999996654
No 121
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.16 E-value=3.1e-14 Score=133.31 Aligned_cols=79 Identities=9% Similarity=0.005 Sum_probs=46.5
Q ss_pred ChHHHHHHHHHH------HHcCCCcEEEEeCCCh-hhHHHHHHHHHHHHHHcCCeEEEEEecC-hhHHHhhcCeEEEEeC
Q 044321 312 SGGQRKRVTTGE------MLVGPAQALFMDEISN-STTFQIVNSLRQFIHILEGTILISLLQP-APETYDLFDDIILISN 383 (521)
Q Consensus 312 SGGqrQRvaIAr------aLv~~P~iLlLDEPTs-~~~~~i~~~L~~l~~~~~~t~ii~i~h~-~~~~~~l~D~VivL~~ 383 (521)
|+|++|++.++. +++.+|+...+|+... ..... .+.+..+. . ...+++.++|. .+++.++||+|+ ++
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~~ld~~~~~~-~~~~~~~~-~-~~~~ii~tsh~~~~~~e~~~~~i~--~~ 170 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDEQMGERCLEL-VEEFESKG-I-DERYFYNTSHLQPTNLNDIVKNLK--TN 170 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC----CGGGGHH-HHHHHHTT-C-CTTSEEECSSSCGGGHHHHHHHHH--HC
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccccCCHHHHHH-HHHHhhcC-C-CccEEEeCCCCChhhHHHHHHHHh--hC
Confidence 888888877777 7888887777775211 11112 33333331 1 23445555666 778999999999 99
Q ss_pred CEEEEecCHhHH
Q 044321 384 GHIVYQGPREYV 395 (521)
Q Consensus 384 G~iv~~G~~~~v 395 (521)
|+++..|+++-+
T Consensus 171 g~~~~~~~~~~~ 182 (189)
T 2bdt_A 171 PRFIFCMAGDPL 182 (189)
T ss_dssp GGGSCC------
T ss_pred CcEEEeecCCch
Confidence 999999987654
No 122
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.14 E-value=2.4e-12 Score=118.41 Aligned_cols=65 Identities=18% Similarity=0.033 Sum_probs=52.9
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------c------eeeecCCccccCCCCHHHHHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------N------RCDISQHDVHIGEMTVRETLA 235 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------~------~~~v~q~d~~~~~lTV~E~l~ 235 (521)
.+.++++|||+|++|++++|+||||||||||+++|+|.+ |..+ . ..+++|+..++ .+||.|++.
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~l~-~ltv~e~l~ 96 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFDLY-RLADPEELE 96 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEECT-TCSCTTHHH
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceeccccc-cCCcHHHHH
Confidence 346899999999999999999999999999999999988 5421 0 12467766666 899999885
Q ss_pred H
Q 044321 236 F 236 (521)
Q Consensus 236 f 236 (521)
+
T Consensus 97 ~ 97 (158)
T 1htw_A 97 F 97 (158)
T ss_dssp H
T ss_pred H
Confidence 4
No 123
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.13 E-value=9.1e-12 Score=129.34 Aligned_cols=138 Identities=14% Similarity=0.106 Sum_probs=85.1
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHH
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAE 252 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~ 252 (521)
+++++|+.|++|++++|+||||||||||+++|+|+++|. .+...+.... ++.... .+ ..
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~-~g~I~ie~~~----e~~~~~-----~~-~~---------- 222 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD-QRLITIEDVP----ELFLPD-----HP-NH---------- 222 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT-SCEEEEESSS----CCCCTT-----CS-SE----------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC-ceEEEECCcc----ccCccc-----cC-CE----------
Confidence 349999999999999999999999999999999998875 3333333211 110000 00 00
Q ss_pred HHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCcccccccc-CccCCCCChHHHHHHHHHHHHcCCCcE
Q 044321 253 LTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVG-DEILRGISGGQRKRVTTGEMLVGPAQA 331 (521)
Q Consensus 253 l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg-~~~~r~LSGGqrQRvaIAraLv~~P~i 331 (521)
+++ +- .+...+++++...+..|+.++..+|+.
T Consensus 223 ----------------------------------------v~~-------v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~ 255 (361)
T 2gza_A 223 ----------------------------------------VHL-------FYPSEAKEEENAPVTAATLLRSCLRMKPTR 255 (361)
T ss_dssp ----------------------------------------EEE-------ECC----------CCHHHHHHHHTTSCCSE
T ss_pred ----------------------------------------EEE-------eecCccccccccccCHHHHHHHHHhcCCCE
Confidence 000 00 000012356667899999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHcCC-eEEEEEecChhHHHhhcCeEEEEeCCE
Q 044321 332 LFMDEISNSTTFQIVNSLRQFIHILEG-TILISLLQPAPETYDLFDDIILISNGH 385 (521)
Q Consensus 332 LlLDEPTs~~~~~i~~~L~~l~~~~~~-t~ii~i~h~~~~~~~l~D~VivL~~G~ 385 (521)
+++||+.... +.+.|..+- .+. +++.++|. . .+...+||++.|..|.
T Consensus 256 ~l~~e~r~~~---~~~~l~~l~--~g~~~~l~t~H~-~-~~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 256 ILLAELRGGE---AYDFINVAA--SGHGGSITSCHA-G-SCELTFERLALMVLQN 303 (361)
T ss_dssp EEESCCCSTH---HHHHHHHHH--TTCCSCEEEEEC-S-SHHHHHHHHHHHHTTS
T ss_pred EEEcCchHHH---HHHHHHHHh--cCCCeEEEEECC-C-CHHHHHHHHHHHHhcc
Confidence 9999998743 333444432 233 44555544 3 4777888988887663
No 124
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.12 E-value=1.7e-12 Score=121.17 Aligned_cols=29 Identities=41% Similarity=0.369 Sum_probs=26.4
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 180 IIRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 180 ~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+++|++++|+||||||||||+++|+|..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 47799999999999999999999999973
No 125
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.11 E-value=1e-11 Score=129.55 Aligned_cols=37 Identities=22% Similarity=0.374 Sum_probs=33.2
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
+|++++ +++|++++|+||||||||||+++|+|++.+.
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 677766 8999999999999999999999999988764
No 126
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.11 E-value=5.2e-12 Score=117.26 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=27.9
Q ss_pred EEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 178 SGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 178 S~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
++.+.+|+.++|+||||+|||||+++|++.+.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34566799999999999999999999999764
No 127
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.10 E-value=2.7e-10 Score=118.51 Aligned_cols=96 Identities=18% Similarity=0.205 Sum_probs=70.2
Q ss_pred HHHHHHHcCCCc-------cccccccC----ccCCCCChHHHHHH------HHHHHHcCC-CcEEEEeCCChhhHHHHHH
Q 044321 286 TDYILKILGLDV-------CADTMVGD----EILRGISGGQRKRV------TTGEMLVGP-AQALFMDEISNSTTFQIVN 347 (521)
Q Consensus 286 ~~~iL~~lgL~~-------~~dt~vg~----~~~r~LSGGqrQRv------aIAraLv~~-P~iLlLDEPTs~~~~~i~~ 347 (521)
+..+++.+++.+ ..+..+.. ..+..|||||+||| ++|++|+.+ |++|||||||+++|.....
T Consensus 245 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~ 324 (371)
T 3auy_A 245 LNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRA 324 (371)
T ss_dssp HHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHH
T ss_pred HHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHH
Confidence 345677777655 11222222 34567999999988 567899999 9999999999999999888
Q ss_pred HHHHHHHHcC-CeEEEEEecChhHHHhhcCeEEEEe
Q 044321 348 SLRQFIHILE-GTILISLLQPAPETYDLFDDIILIS 382 (521)
Q Consensus 348 ~L~~l~~~~~-~t~ii~i~h~~~~~~~l~D~VivL~ 382 (521)
.+.+++.... ...|++++|+. ++..+||++++|+
T Consensus 325 ~l~~~l~~~~~~~~vi~~th~~-~~~~~~d~~~~l~ 359 (371)
T 3auy_A 325 KLAEIFRKVKSIPQMIIITHHR-ELEDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHCCSCSEEEEEESCG-GGGGGCSEEEEEE
T ss_pred HHHHHHHHhccCCeEEEEEChH-HHHhhCCEEEEEE
Confidence 8888776642 22455556665 4678999999997
No 128
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.09 E-value=4.9e-11 Score=122.28 Aligned_cols=31 Identities=29% Similarity=0.294 Sum_probs=28.4
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
.++|++++|+||||||||||+++|+|++.+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999988765
No 129
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.08 E-value=4.7e-12 Score=133.84 Aligned_cols=158 Identities=16% Similarity=0.132 Sum_probs=88.7
Q ss_pred eeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC-----C--C-CceeeecCCccccCCCCHHHHHHHH---HHhcc
Q 044321 174 LKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS-----S--L-KNRCDISQHDVHIGEMTVRETLAFS---ARCQG 242 (521)
Q Consensus 174 L~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~-----~--~-~~~~~v~q~d~~~~~lTV~E~l~f~---~~~~~ 242 (521)
-++|+++++.|+.++|+|+|||||||||++|+|..+. . . ...+++.+.+. ..+++.++..+. ....+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~--~~~~l~DtpGli~~a~~~~~ 224 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE--ERFTLADIPGIIEGASEGKG 224 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS--CEEEEEECCCCCCCGGGSCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc--ceEEEEeccccccchhhhhh
Confidence 4899999999999999999999999999999997421 0 0 11234444320 111222211110 00000
Q ss_pred CchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHH
Q 044321 243 VGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTG 322 (521)
Q Consensus 243 ~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIA 322 (521)
.+. .+.+. ...++.++..+++. + ..+..||+|++|++.+|
T Consensus 225 L~~------------------------~fl~~--------~era~~lL~vvDls---~-----~~~~~ls~g~~el~~la 264 (416)
T 1udx_A 225 LGL------------------------EFLRH--------IARTRVLLYVLDAA---D-----EPLKTLETLRKEVGAYD 264 (416)
T ss_dssp SCH------------------------HHHHH--------HTSSSEEEEEEETT---S-----CHHHHHHHHHHHHHHHC
T ss_pred hhH------------------------HHHHH--------HHHHHhhhEEeCCc---c-----CCHHHHHHHHHHHHHHh
Confidence 000 00000 00112233333443 2 23345999999999999
Q ss_pred HHHcCCCcEEEEeCCChhhHH---HHHHHHHHHHHHcCCeEEEEEecChhHHHhhcCe
Q 044321 323 EMLVGPAQALFMDEISNSTTF---QIVNSLRQFIHILEGTILISLLQPAPETYDLFDD 377 (521)
Q Consensus 323 raLv~~P~iLlLDEPTs~~~~---~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~D~ 377 (521)
++|+..|.+|++ +.+|. ...+.+.+.+...+.++++++.+....+.++++.
T Consensus 265 ~aL~~~P~ILVl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~ 318 (416)
T 1udx_A 265 PALLRRPSLVAL----NKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEA 318 (416)
T ss_dssp HHHHHSCEEEEE----ECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred HHhhcCCEEEEE----ECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHH
Confidence 999999999998 32221 4445555555444556666665555555555543
No 130
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.06 E-value=3.1e-11 Score=129.41 Aligned_cols=38 Identities=21% Similarity=0.174 Sum_probs=34.9
Q ss_pred eeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 174 LKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 174 L~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
-++|||.+++|++++|+||||||||||+++|+|++.+.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~ 320 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ 320 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc
Confidence 36899999999999999999999999999999988654
No 131
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.06 E-value=5.3e-13 Score=127.38 Aligned_cols=121 Identities=18% Similarity=0.148 Sum_probs=70.6
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhc
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAA 260 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~ 260 (521)
.++|++++|+||||||||||+++|+|++.+.....++|++++.++.. +..+++.... ..+.+..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~-~~~~~~~~~~-~~~~~~~~------------- 83 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDN-RLLEPRGLLP-RKGAPETF------------- 83 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCH-HHHGGGTCGG-GTTSGGGB-------------
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCH-HHHHHhcccc-cCCCCchh-------------
Confidence 47899999999999999999999999987541235778877655432 2222211000 00110000
Q ss_pred CCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHH-HHHcCCCcEEEEeCCC
Q 044321 261 GIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTG-EMLVGPAQALFMDEIS 338 (521)
Q Consensus 261 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIA-raLv~~P~iLlLDEPT 338 (521)
+... ....+..+...+..++.+.+ ...++|+||+||+++| ++++.++.++++|||.
T Consensus 84 ------~~~~---------------~~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 84 ------DFEG---------------FQRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp ------CHHH---------------HHHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred ------hHHH---------------HHHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 0000 01112211111222233333 2335899999999998 8888888888899974
No 132
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.04 E-value=1.3e-09 Score=114.65 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=32.2
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHH--HhCCCCCCC----CceeeecCCc
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLA--LAGKLDSSL----KNRCDISQHD 222 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~--LaG~l~~~~----~~~~~v~q~d 222 (521)
+-|++|++++|+||||||||||++. +++.+++.. ....|+..++
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 5689999999999999999999994 456554421 2245665543
No 133
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.04 E-value=3.1e-11 Score=124.99 Aligned_cols=108 Identities=19% Similarity=0.132 Sum_probs=74.2
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC-CCCC----------------ceeeecCCccccCCCCHHHHHH
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD-SSLK----------------NRCDISQHDVHIGEMTVRETLA 235 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~-~~~~----------------~~~~v~q~d~~~~~lTV~E~l~ 235 (521)
.++++++. .+|++++|+||||||||||+|+|+|... +..+ ..++++|+..+++..+|+++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~-- 281 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF-- 281 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTC--
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh--
Confidence 45666664 4899999999999999999999999887 5421 11566777667777777763
Q ss_pred HHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHH
Q 044321 236 FSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQ 315 (521)
Q Consensus 236 f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGq 315 (521)
. +.+.. . .+......++++.+|+....+..+. ++| ||
T Consensus 282 -~--l~~l~----------~------------------------~e~~~~~~e~l~~~gl~~f~~~~~~-----~lS-G~ 318 (358)
T 2rcn_A 282 -G--LWHLE----------P------------------------EQITQGFVEFHDYLGHCKYRDCKHD-----ADP-GC 318 (358)
T ss_dssp -C--CCCCC----------H------------------------HHHHHTSGGGGGGTTCSSSTTCCSS-----SCT-TC
T ss_pred -h--hcCCC----------H------------------------HHHHHHHHHHHHHcCCchhcCCCcc-----cCC-HH
Confidence 1 00100 0 0011123456777888877776654 599 99
Q ss_pred HHHHHHHHHHc
Q 044321 316 RKRVTTGEMLV 326 (521)
Q Consensus 316 rQRvaIAraLv 326 (521)
+||++||++++
T Consensus 319 ~~r~ala~gli 329 (358)
T 2rcn_A 319 AIREAVENGAI 329 (358)
T ss_dssp HHHHHHHHTSS
T ss_pred HHHHHHHhcCC
Confidence 99999999875
No 134
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.01 E-value=1.1e-11 Score=121.09 Aligned_cols=29 Identities=38% Similarity=0.448 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHh---CCCCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALA---GKLDSS 211 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~La---G~l~~~ 211 (521)
++++++|+||||||||||+++|+ |+..++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 46899999999999999999999 987653
No 135
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.98 E-value=6.3e-12 Score=117.18 Aligned_cols=30 Identities=13% Similarity=0.137 Sum_probs=27.5
Q ss_pred cccccccCccCCCCChHHHHHHHHHHHHcCCCcE
Q 044321 298 CADTMVGDEILRGISGGQRKRVTTGEMLVGPAQA 331 (521)
Q Consensus 298 ~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~i 331 (521)
.+|+.+++ +|||||+||++|||+++.+|++
T Consensus 95 g~dt~i~E----glSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 95 DYDLVITE----GFSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp TCSEEEEE----SCGGGCCCEEEECSSGGGGGGG
T ss_pred CCCEEEEC----CcCCCCCcEEEEEecccCCCcc
Confidence 57999987 5999999999999999999986
No 136
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.97 E-value=2.5e-12 Score=131.25 Aligned_cols=56 Identities=11% Similarity=0.054 Sum_probs=37.8
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHHHhhc
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPETYDLF 375 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~~~l~ 375 (521)
.+|+||+||+..+++++.+|+++ ||| ..+.+.|+++. .+.+|+.++|....+..++
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~-----~~l~~~l~~l~---~~~~ii~~sh~~~~~~~l~ 196 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA-----EKLHERLARIN---ARAPVYTVTHGDIDLGLLF 196 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT-----HHHHHHHHHHC---SSSCEEECCSSCCCGGGGS
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH-----HHHHHHHHHhC---CCCeEEEecccCCCHHHHh
Confidence 48999999998888888998887 888 55666666542 2344455555433333344
No 137
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.94 E-value=9.2e-12 Score=131.73 Aligned_cols=41 Identities=34% Similarity=0.410 Sum_probs=35.5
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
....+|+++ + .++|++++|+|||||||||||++|+|.+.+.
T Consensus 154 ~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 154 HNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp HHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 344588888 5 4899999999999999999999999988765
No 138
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.88 E-value=3.3e-09 Score=107.68 Aligned_cols=113 Identities=18% Similarity=0.165 Sum_probs=75.6
Q ss_pred eEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHH
Q 044321 177 VSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRR 256 (521)
Q Consensus 177 VS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~ 256 (521)
+++..++|++++|+|||||||||++..|++.+.+..+ ...+...|..- ....+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~-kV~lv~~D~~r--~~a~e------------------------ 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGK-SVVLAAADTFR--AAAIE------------------------ 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEEEEECTTC--HHHHH------------------------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCC-EEEEEcccccc--HHHHH------------------------
Confidence 4566789999999999999999999999998765422 22222222110 00000
Q ss_pred HHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHH---HHHHHHcCCCcEEE
Q 044321 257 EKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRV---TTGEMLVGPAQALF 333 (521)
Q Consensus 257 e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRv---aIAraLv~~P~iLl 333 (521)
....+++.+|++. +...|||+.+++ ++++++..+|+++|
T Consensus 150 ----------------------------qL~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvI 191 (306)
T 1vma_A 150 ----------------------------QLKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVI 191 (306)
T ss_dssp ----------------------------HHHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEE
T ss_pred ----------------------------HHHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEE
Confidence 0112334456542 124789999999 89999999999999
Q ss_pred EeCCCh-hhHHHHHHHHHHHHH
Q 044321 334 MDEISN-STTFQIVNSLRQFIH 354 (521)
Q Consensus 334 LDEPTs-~~~~~i~~~L~~l~~ 354 (521)
+|+|.. ..+...++.|..+..
T Consensus 192 iDtpg~~~~~~~l~~eL~~l~~ 213 (306)
T 1vma_A 192 IDTAGRLHTKKNLMEELRKVHR 213 (306)
T ss_dssp EEECCCCSCHHHHHHHHHHHHH
T ss_pred EECCCchhhHHHHHHHHHHHHH
Confidence 999976 455666666666543
No 139
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.86 E-value=2.6e-09 Score=96.99 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=28.7
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
+|+++ +|+.++|+||||||||||+++|+|.+.+
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 55555 8999999999999999999999997644
No 140
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.83 E-value=9e-10 Score=111.52 Aligned_cols=110 Identities=12% Similarity=0.015 Sum_probs=70.0
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC----------------------ceeeecCCccc-----cCCCCHHH
Q 044321 180 IIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK----------------------NRCDISQHDVH-----IGEMTVRE 232 (521)
Q Consensus 180 ~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~----------------------~~~~v~q~d~~-----~~~lTV~E 232 (521)
.+.+|++++|+||||||||||+|+|+ .+.+..+ ..+|++|.+.. ++.+|+ |
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 34569999999999999999999999 7765311 12677776533 267888 7
Q ss_pred HH--HHHHHhccCchhhHHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCc-cccccccCccCC
Q 044321 233 TL--AFSARCQGVGSRYEMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDV-CADTMVGDEILR 309 (521)
Q Consensus 233 ~l--~f~~~~~~~~~~~~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~-~~dt~vg~~~~r 309 (521)
++ .|.. . ..+. -+..+.. ...+....++++++.++|.+ .++.++.
T Consensus 239 ~l~~~f~~-~----------~~~~--c~~~~~~--------------~~~e~~~~v~~~l~~~~L~~~~~~~~~~----- 286 (302)
T 2yv5_A 239 EVRNYFRE-F----------LRYQ--CKYPDCT--------------HTNEPGCAVKEAVKNGEISCERYKSYLK----- 286 (302)
T ss_dssp GGGGGCGG-G----------HHHH--HHSTTCC--------------SSSCTTCHHHHHHHTTSSCHHHHHHHHH-----
T ss_pred HHHHHHHH-H----------HHcc--CCCCCCC--------------CCCCCCCHHHHHHHcCCCCHHHHHHHHH-----
Confidence 77 3320 0 0000 0000000 01122335677899999986 6666654
Q ss_pred CCChHHHHHHHHHH
Q 044321 310 GISGGQRKRVTTGE 323 (521)
Q Consensus 310 ~LSGGqrQRvaIAr 323 (521)
.|||.++|++.|||
T Consensus 287 ~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 287 IIKVYLEEIKELCR 300 (302)
T ss_dssp HTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHhc
Confidence 49999999999986
No 141
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.81 E-value=2.1e-08 Score=96.53 Aligned_cols=56 Identities=16% Similarity=0.098 Sum_probs=37.9
Q ss_pred CCCcEEEEeCCChhh------HHHHHHHHHHHHHHcCCeEEEEEecChhH--------HHhhcCeEEEEeC
Q 044321 327 GPAQALFMDEISNST------TFQIVNSLRQFIHILEGTILISLLQPAPE--------TYDLFDDIILISN 383 (521)
Q Consensus 327 ~~P~iLlLDEPTs~~------~~~i~~~L~~l~~~~~~t~ii~i~h~~~~--------~~~l~D~VivL~~ 383 (521)
.+|+++++|+|++.. ..+.+..|.+++++.+.+++++. |.... +.+.||.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~-h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVS-QVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEE-ECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEe-cCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999832 24555666666666566666554 44333 4678999999974
No 142
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.78 E-value=1.4e-08 Score=108.42 Aligned_cols=179 Identities=14% Similarity=0.122 Sum_probs=102.3
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-ceeeecCCccccCCCCHHHHHHHH-HHhccCchhh
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-NRCDISQHDVHIGEMTVRETLAFS-ARCQGVGSRY 247 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-~~~~v~q~d~~~~~lTV~E~l~f~-~~~~~~~~~~ 247 (521)
+...|+++.+-+++|++++|.|+||+|||||+..|++...+..+ ...|++. +++..+...-. +...++...
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~------E~s~~~l~~r~~~~~~~~~~~- 261 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL------EMSAQQLVMRMLCAEGNINAQ- 261 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES------SSCHHHHHHHHHHHHHTCCHH-
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC------CCCHHHHHHHHHHHHcCCCHH-
Confidence 45679999989999999999999999999999999885432111 1233322 34544322111 111111100
Q ss_pred HHHHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHc-
Q 044321 248 EMLAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLV- 326 (521)
Q Consensus 248 ~~~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv- 326 (521)
.+ ..+ ....+.. ..+...+..++..... +-+ ..++|++|.+ +.++.++
T Consensus 262 ----~l-----~~g---~l~~~~~------------~~~~~a~~~l~~~~l~---i~d--~~~~s~~~i~--~~~~~l~~ 310 (454)
T 2r6a_A 262 ----NL-----RTG---KLTPEDW------------GKLTMAMGSLSNAGIY---IDD--TPSIRVSDIR--AKCRRLKQ 310 (454)
T ss_dssp ----HH-----HTS---CCCHHHH------------HHHHHHHHHHHSSCEE---EEC--CTTCCHHHHH--HHHHHHHT
T ss_pred ----HH-----hcC---CCCHHHH------------HHHHHHHHHHhcCCEE---EEC--CCCCCHHHHH--HHHHHHHH
Confidence 00 000 0010100 1122233333332211 111 2359999987 5666665
Q ss_pred -CCCcEEEEeCCChhh--------H----HHHHHHHHHHHHHcCCeEEEEEec-----------Ch-------hHHHhhc
Q 044321 327 -GPAQALFMDEISNST--------T----FQIVNSLRQFIHILEGTILISLLQ-----------PA-------PETYDLF 375 (521)
Q Consensus 327 -~~P~iLlLDEPTs~~--------~----~~i~~~L~~l~~~~~~t~ii~i~h-----------~~-------~~~~~l~ 375 (521)
.+|+++++|+++... . .++.+.|+.++++.+.++|++.|- |. ..+...|
T Consensus 311 ~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~a 390 (454)
T 2r6a_A 311 ESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDA 390 (454)
T ss_dssp TTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHC
T ss_pred HcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhC
Confidence 689999999988721 1 356677888877777776665541 21 1467789
Q ss_pred CeEEEEeCCEE
Q 044321 376 DDIILISNGHI 386 (521)
Q Consensus 376 D~VivL~~G~i 386 (521)
|.|++|+.++.
T Consensus 391 D~vi~l~r~~~ 401 (454)
T 2r6a_A 391 DIVAFLYRDDY 401 (454)
T ss_dssp SEEEEEEETTC
T ss_pred CEEEEEecccc
Confidence 99999987653
No 143
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.77 E-value=7.2e-11 Score=121.48 Aligned_cols=40 Identities=23% Similarity=0.186 Sum_probs=36.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
..+|+++|+.+.+|++++|+||||||||||+++|+|.+.|
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 4689999999999999999999999999999999987644
No 144
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.69 E-value=4.7e-11 Score=125.19 Aligned_cols=63 Identities=6% Similarity=0.095 Sum_probs=49.1
Q ss_pred CC--cEEEEeCCChhhHHHHHHHHHHHHHHc---CCeEEEEEecChhHHHhhcCeEE-EEeCC-EEEEecCH
Q 044321 328 PA--QALFMDEISNSTTFQIVNSLRQFIHIL---EGTILISLLQPAPETYDLFDDII-LISNG-HIVYQGPR 392 (521)
Q Consensus 328 ~P--~iLlLDEPTs~~~~~i~~~L~~l~~~~---~~t~ii~i~h~~~~~~~l~D~Vi-vL~~G-~iv~~G~~ 392 (521)
+| +++++|||+...+.+.++.....+... ++++++ +|....+.++||++. +|.+| ++++.|+.
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 88 999999999999888776655555443 233332 677888999999999 99999 99887764
No 145
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.69 E-value=1.4e-09 Score=104.94 Aligned_cols=38 Identities=24% Similarity=0.178 Sum_probs=22.9
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHh-CCCC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALA-GKLD 209 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~La-G~l~ 209 (521)
+..+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 5788999999999999999999999999999999 9873
No 146
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.67 E-value=2.3e-09 Score=100.75 Aligned_cols=32 Identities=28% Similarity=0.431 Sum_probs=26.5
Q ss_pred EEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 178 SGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 178 S~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
|+.+++|++++|+||||||||||+++|+|+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 57788999999999999999999999999863
No 147
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.59 E-value=8.4e-08 Score=97.85 Aligned_cols=44 Identities=16% Similarity=0.201 Sum_probs=30.5
Q ss_pred HcCCCcEEEEeCCChhhHHHHHHHHHHHHHHc-CCeEEEEEecChh
Q 044321 325 LVGPAQALFMDEISNSTTFQIVNSLRQFIHIL-EGTILISLLQPAP 369 (521)
Q Consensus 325 Lv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~-~~t~ii~i~h~~~ 369 (521)
+..+|+++|+|||++ ++....+.|.+.+.+. ..+++|+++|...
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 788999999999999 7777777777777654 3556666666543
No 148
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.58 E-value=6.6e-08 Score=97.57 Aligned_cols=138 Identities=14% Similarity=0.144 Sum_probs=79.6
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC-ceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHHHHHHHHhc
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK-NRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELTRREKAA 260 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~-~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~~~e~~~ 260 (521)
.+|++++|+|||||||||++..|++.+.+..+ ...++..+. ...+..+.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~---~r~~a~eqL~~~~---------------------- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT---YRIAAVEQLKTYA---------------------- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC---SSTTHHHHHHHHH----------------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc---ccchHHHHHHHHH----------------------
Confidence 47999999999999999999999998765322 334454432 1333444333211
Q ss_pred CCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEEeCCChh
Q 044321 261 GIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFMDEISNS 340 (521)
Q Consensus 261 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlLDEPTs~ 340 (521)
+.+|++... ..+. ..-+.+|++ +.+|+++|+| |++
T Consensus 158 ------------------------------~~~gl~~~~----------~~~~-~~l~~al~~--~~~~dlvIiD--T~G 192 (296)
T 2px0_A 158 ------------------------------ELLQAPLEV----------CYTK-EEFQQAKEL--FSEYDHVFVD--TAG 192 (296)
T ss_dssp ------------------------------TTTTCCCCB----------CSSH-HHHHHHHHH--GGGSSEEEEE--CCC
T ss_pred ------------------------------HhcCCCeEe----------cCCH-HHHHHHHHH--hcCCCEEEEe--CCC
Confidence 112332110 0122 233555654 4899999999 553
Q ss_pred h---HHHHHHHHHHHHHHc--CCeEEEE-EecChhHHHhhcCeEEEEeCCEEEEe
Q 044321 341 T---TFQIVNSLRQFIHIL--EGTILIS-LLQPAPETYDLFDDIILISNGHIVYQ 389 (521)
Q Consensus 341 ~---~~~i~~~L~~l~~~~--~~t~ii~-i~h~~~~~~~l~D~VivL~~G~iv~~ 389 (521)
. +...+..+.+++... ..+++++ .+|...++.+.++++..+..|.++..
T Consensus 193 ~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 193 RNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp CCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred CChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 3 333444444443211 1233333 46666778888887766777777764
No 149
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.58 E-value=3.8e-07 Score=94.09 Aligned_cols=43 Identities=26% Similarity=0.268 Sum_probs=31.0
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCC
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQH 221 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~ 221 (521)
+-+++|+++.|.||||||||||+..++...........|+..+
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 3688999999999999999999888875432222233555543
No 150
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.58 E-value=1.6e-08 Score=108.42 Aligned_cols=40 Identities=18% Similarity=0.045 Sum_probs=37.3
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
..+|+||||+|++ ++++|+|||||||||||++|+|++.|+
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~ 56 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD 56 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 3589999999999 999999999999999999999988775
No 151
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.56 E-value=5.7e-09 Score=105.46 Aligned_cols=33 Identities=24% Similarity=0.293 Sum_probs=29.3
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
|.+.+|++++|+|||||||||||++|+|+..|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~ 196 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLR 196 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccccc
Confidence 345679999999999999999999999988764
No 152
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.53 E-value=3.5e-09 Score=108.33 Aligned_cols=40 Identities=35% Similarity=0.439 Sum_probs=35.5
Q ss_pred CcceeeeeeEEEEeCC-------cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 169 KHLTILKDVSGIIRPG-------RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~G-------e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+...+++++++.|++| +.++|+||||+|||||+++|+|.+
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4456888999999876 899999999999999999999976
No 153
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.51 E-value=3.1e-07 Score=92.56 Aligned_cols=117 Identities=16% Similarity=0.093 Sum_probs=74.4
Q ss_pred eeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHHHHHHH
Q 044321 175 KDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEMLAELT 254 (521)
Q Consensus 175 ~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~l~ 254 (521)
+++++. +|++++|+|+||+||||++..|+|.+.+.. ....+...|..-+ .++ +. +
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~-~~v~l~~~d~~~~-~~~-~q--l------------------ 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKG-RRPLLVAADTQRP-AAR-EQ--L------------------ 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTT-CCEEEEECCSSCH-HHH-HH--H------------------
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEecCCcccH-hHH-HH--H------------------
Confidence 678888 999999999999999999999999876532 2222222222100 000 00 0
Q ss_pred HHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCCcEEEE
Q 044321 255 RREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPAQALFM 334 (521)
Q Consensus 255 ~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P~iLlL 334 (521)
..+.+..|++.... + .+-.-.+.+|.+|+.+...+++++|+
T Consensus 146 --------------------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~vii 186 (295)
T 1ls1_A 146 --------------------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILV 186 (295)
T ss_dssp --------------------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEE
T ss_pred --------------------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 00122344442210 0 01233456788999998899999999
Q ss_pred eCC-ChhhHHHHHHHHHHHHHH
Q 044321 335 DEI-SNSTTFQIVNSLRQFIHI 355 (521)
Q Consensus 335 DEP-Ts~~~~~i~~~L~~l~~~ 355 (521)
||| +.+++...+..+..+...
T Consensus 187 Dtpp~~~~d~~~~~~l~~~~~~ 208 (295)
T 1ls1_A 187 DTAGRLQIDEPLMGELARLKEV 208 (295)
T ss_dssp ECCCCSSCCHHHHHHHHHHHHH
T ss_pred eCCCCccccHHHHHHHHHHhhh
Confidence 998 888887777777776543
No 154
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.49 E-value=1.8e-08 Score=101.98 Aligned_cols=28 Identities=21% Similarity=0.131 Sum_probs=26.8
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
.+|++++|+||||||||||+++|+|++.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999999999876
No 155
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.47 E-value=5.8e-08 Score=104.87 Aligned_cols=31 Identities=19% Similarity=0.060 Sum_probs=28.2
Q ss_pred eeEEEEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 176 DVSGIIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 176 dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
.+++.+.++..++|.|++||||||+|++|..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 4778889999999999999999999999875
No 156
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.45 E-value=2e-08 Score=101.92 Aligned_cols=56 Identities=18% Similarity=0.157 Sum_probs=38.9
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCC--------------------c-eeeecCCccccC----CCCHHHH
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLK--------------------N-RCDISQHDVHIG----EMTVRET 233 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~--------------------~-~~~v~q~d~~~~----~lTV~E~ 233 (521)
+.+.+|++++|+||||||||||+|+|+|...+..+ . .+++.|.+.... .+|+ |+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 45668999999999999999999999998754310 0 257777765443 6788 88
Q ss_pred HH
Q 044321 234 LA 235 (521)
Q Consensus 234 l~ 235 (521)
+.
T Consensus 247 l~ 248 (307)
T 1t9h_A 247 LG 248 (307)
T ss_dssp HG
T ss_pred HH
Confidence 73
No 157
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.39 E-value=5.5e-08 Score=107.40 Aligned_cols=52 Identities=21% Similarity=0.210 Sum_probs=43.0
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQ 220 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q 220 (521)
+...+++++++.+.+|+.++|+||||+|||||+++|+|.+.+.......+.+
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~ 96 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFP 96 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEEC
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeC
Confidence 4557899999999999999999999999999999999998765433334433
No 158
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.28 E-value=7.8e-07 Score=91.35 Aligned_cols=131 Identities=14% Similarity=0.099 Sum_probs=80.8
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEM 249 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~ 249 (521)
...-|+.+.+-+.+|+++.|.|+||+|||||+..++...........|++ .+++..+...-..
T Consensus 32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS------lEms~~ql~~Rll----------- 94 (338)
T 4a1f_A 32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS------LEMSAEQLALRAL----------- 94 (338)
T ss_dssp SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE------SSSCHHHHHHHHH-----------
T ss_pred CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe------CCCCHHHHHHHHH-----------
Confidence 45678888888999999999999999999999888763221111112222 2344443211000
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCCccccccccCccCCCCChHHHHHHHHHHHHcCCC
Q 044321 250 LAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLDVCADTMVGDEILRGISGGQRKRVTTGEMLVGPA 329 (521)
Q Consensus 250 ~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~~P 329 (521)
.....+.+....+ | .||+++.+|++.|...+.++
T Consensus 95 --------------------------------------s~~~~v~~~~l~~---g-----~Ls~~e~~~l~~a~~~l~~~ 128 (338)
T 4a1f_A 95 --------------------------------------SDLTSINMHDLES---G-----RLDDDQWENLAKCFDHLSQK 128 (338)
T ss_dssp --------------------------------------HHHHCCCHHHHHH---T-----CCCHHHHHHHHHHHHHHHHS
T ss_pred --------------------------------------HHhhCCCHHHHhc---C-----CCCHHHHHHHHHHHHHHhcC
Confidence 0000001111000 2 49999999999999888899
Q ss_pred cEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEE
Q 044321 330 QALFMDEISNSTTFQIVNSLRQFIHILEGTILISL 364 (521)
Q Consensus 330 ~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i 364 (521)
+++|.|+|..+. .++...++.+..+.++..+|++
T Consensus 129 ~l~I~d~~~~si-~~i~~~ir~l~~~~gg~~lIVI 162 (338)
T 4a1f_A 129 KLFFYDKSYVRI-EQIRLQLRKLKSQHKELGIAFI 162 (338)
T ss_dssp CEEEECCTTCCH-HHHHHHHHHHHHHCTTEEEEEE
T ss_pred CeEEeCCCCCcH-HHHHHHHHHHHHhcCCCCEEEE
Confidence 999999986543 3566667777665424444443
No 159
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.27 E-value=2.8e-07 Score=98.88 Aligned_cols=34 Identities=38% Similarity=0.624 Sum_probs=28.7
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++++++.+++| ++|+||||+|||||+++|++..
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 566677777777 8899999999999999999843
No 160
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.26 E-value=1.1e-06 Score=82.63 Aligned_cols=70 Identities=14% Similarity=0.133 Sum_probs=38.7
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEecChhHH--HhhcCeEEEEe
Q 044321 311 ISGGQRKRVTTGEMLVGPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQPAPET--YDLFDDIILIS 382 (521)
Q Consensus 311 LSGGqrQRvaIAraLv~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~~~--~~l~D~VivL~ 382 (521)
.+.|+.+|..+++.+..+|..+.++ ++.+.+.+...+.+.+....+.++|+..+...+. ...||.+++|+
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 3678899999999888887643332 2344555655565555433333444444544443 56789888885
No 161
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.23 E-value=4.2e-07 Score=83.84 Aligned_cols=35 Identities=29% Similarity=0.249 Sum_probs=32.2
Q ss_pred eeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 175 KDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 175 ~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
+++++.+.+| +++|+||||||||||+++|++.+.+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 6789999999 9999999999999999999997754
No 162
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.23 E-value=4.3e-07 Score=85.50 Aligned_cols=40 Identities=28% Similarity=0.018 Sum_probs=24.8
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
....+++||||.+++|++++|+|||||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3446899999999999999999999999999999999865
No 163
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.21 E-value=2.7e-07 Score=87.24 Aligned_cols=29 Identities=34% Similarity=0.425 Sum_probs=23.7
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
+++|++++|+||||||||||+++|+|+++
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35899999999999999999999999764
No 164
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.19 E-value=6.7e-07 Score=83.74 Aligned_cols=32 Identities=22% Similarity=0.193 Sum_probs=27.4
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
++|++|++++|+||||||||||+++|++.+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 36789999999999999999999999998855
No 165
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.15 E-value=2.4e-05 Score=80.75 Aligned_cols=43 Identities=26% Similarity=0.198 Sum_probs=33.2
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCC
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQH 221 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~ 221 (521)
+=+++|+++.|.||||||||||+..+++...+......|+...
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E 98 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE 98 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 3588999999999999999999999998654332334566554
No 166
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.14 E-value=1.5e-07 Score=92.62 Aligned_cols=40 Identities=38% Similarity=0.445 Sum_probs=36.3
Q ss_pred cceeeeeeEEEEeC---CcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 170 HLTILKDVSGIIRP---GRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 170 ~~~iL~dVS~~I~~---Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
...+|+|+||.|++ |++++|+|++||||||+.++|++.+.
T Consensus 31 ~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 31 EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp -CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45699999999999 99999999999999999999998653
No 167
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.09 E-value=3.5e-07 Score=99.00 Aligned_cols=41 Identities=22% Similarity=0.113 Sum_probs=38.1
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSL 212 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~ 212 (521)
.+++++++.+++|+.++|+|||||||||||++|+|+++|+.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~ 288 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDA 288 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCC
Confidence 57899999999999999999999999999999999997753
No 168
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.08 E-value=8.3e-07 Score=82.67 Aligned_cols=27 Identities=33% Similarity=0.493 Sum_probs=24.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
|++++|+||||||||||+++|+|++++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 678999999999999999999998753
No 169
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.07 E-value=2.9e-06 Score=96.23 Aligned_cols=69 Identities=17% Similarity=0.229 Sum_probs=51.0
Q ss_pred CCChHHHHHHHHHHHHcCCCcEEEEeCCCh-hhHHHH-HHHHHHHHHHc-C-CeEEEEEecChhHHHhhcCeE
Q 044321 310 GISGGQRKRVTTGEMLVGPAQALFMDEISN-STTFQI-VNSLRQFIHIL-E-GTILISLLQPAPETYDLFDDI 378 (521)
Q Consensus 310 ~LSGGqrQRvaIAraLv~~P~iLlLDEPTs-~~~~~i-~~~L~~l~~~~-~-~t~ii~i~h~~~~~~~l~D~V 378 (521)
-+|+|+.+|..++..++.+++++++|||.. +++... ...++.+.... + .+++++.|++...+.++++..
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSC
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCC
Confidence 489999999999999999999999999996 666443 34444444332 2 355666788877777888753
No 170
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.07 E-value=1.4e-06 Score=80.79 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
+|++++|+||||||||||+++|++.+++
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~ 31 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPD 31 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 6899999999999999999999997653
No 171
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.03 E-value=6.1e-06 Score=83.63 Aligned_cols=126 Identities=15% Similarity=0.067 Sum_probs=76.2
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccCCCCHHHHHHHHHHhccCchhhHH
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIGEMTVRETLAFSARCQGVGSRYEM 249 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~ 249 (521)
....|+++.+-+.+|+++.|.|+||+|||||+..++...........|++ .+++..+...-...
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s------lE~s~~~l~~R~~~---------- 117 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS------LEMGKKENIKRLIV---------- 117 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE------SSSCHHHHHHHHHH----------
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE------CCCCHHHHHHHHHH----------
Confidence 34578888888999999999999999999999887742211101112222 13444432211000
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHhhhchhhhhHHHHHHHHcCCC--ccccccccCccCCCCChHHHHHHHHHHHHcC
Q 044321 250 LAELTRREKAAGIKPDPDIDVFMKAAATEGQEVSVITDYILKILGLD--VCADTMVGDEILRGISGGQRKRVTTGEMLVG 327 (521)
Q Consensus 250 ~~~l~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~lgL~--~~~dt~vg~~~~r~LSGGqrQRvaIAraLv~ 327 (521)
. ..|++ ...+ |. ..||+++.+|+..|...+.
T Consensus 118 ---------------------------------------~--~~~i~~~~l~~---~~---~~l~~~~~~~l~~a~~~l~ 150 (315)
T 3bh0_A 118 ---------------------------------------T--AGSINAQKIKA---AR---RDFASEDWGKLSMAIGEIS 150 (315)
T ss_dssp ---------------------------------------H--HTTCCHHHHHS---CH---HHHCSSCHHHHHHHHHHHH
T ss_pred ---------------------------------------H--HcCCCHHHHhc---CC---CCCCHHHHHHHHHHHHHHh
Confidence 0 00111 0000 00 1289999999999988888
Q ss_pred CCcEEEEeCCChhhHHHHHHHHHHHHHHcCCe
Q 044321 328 PAQALFMDEISNSTTFQIVNSLRQFIHILEGT 359 (521)
Q Consensus 328 ~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t 359 (521)
++++++.|+|... -.++...++++..+.+..
T Consensus 151 ~~~i~i~d~~~~~-~~~i~~~i~~l~~~~~~~ 181 (315)
T 3bh0_A 151 NSNINIFDKAGQS-VNYIWSKTRQTKRKNPGK 181 (315)
T ss_dssp TSCEEEECCSCCB-HHHHHHHHHHHHHTSSSC
T ss_pred CCCEEEECCCCCC-HHHHHHHHHHHHHhcCCC
Confidence 8899999988643 344666667666544434
No 172
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.02 E-value=4.1e-05 Score=77.78 Aligned_cols=35 Identities=34% Similarity=0.320 Sum_probs=28.9
Q ss_pred eeeeeE-EEEeCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 173 ILKDVS-GIIRPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 173 iL~dVS-~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.|+.+- +-+++|+++.|.||+|||||||+..++..
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 344442 57899999999999999999999988864
No 173
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.97 E-value=8.7e-07 Score=83.42 Aligned_cols=41 Identities=24% Similarity=0.174 Sum_probs=35.2
Q ss_pred CcceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 169 KHLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
+...+.+.+++..++|++++|+||||||||||+++|++.+.
T Consensus 10 ~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 10 CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34456677778889999999999999999999999999774
No 174
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.95 E-value=8.1e-07 Score=88.44 Aligned_cols=38 Identities=34% Similarity=0.424 Sum_probs=35.0
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
..+++++++.+++| ++|+||||||||||+++|+|.+.+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC
Confidence 46899999999999 999999999999999999998765
No 175
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.95 E-value=3.8e-06 Score=79.73 Aligned_cols=29 Identities=28% Similarity=0.361 Sum_probs=27.0
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999998765
No 176
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.93 E-value=5.5e-05 Score=77.53 Aligned_cols=34 Identities=24% Similarity=0.155 Sum_probs=28.7
Q ss_pred eeeeE-EEEeCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 174 LKDVS-GIIRPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 174 L~dVS-~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
|+.+- +-+++|+++.|.||||||||||+..|+..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44433 56899999999999999999999988874
No 177
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.92 E-value=3.8e-06 Score=78.99 Aligned_cols=31 Identities=29% Similarity=0.324 Sum_probs=24.9
Q ss_pred EEEEeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 178 SGIIRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 178 S~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+..++|++++|+||||||||||+++|+|.+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3566789999999999999999999999965
No 178
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.90 E-value=1.3e-06 Score=91.03 Aligned_cols=38 Identities=37% Similarity=0.232 Sum_probs=35.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
..+|+++++.+++|++++|+||||||||||+++|+|.+
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 36899999999999999999999999999999999954
No 179
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.90 E-value=9.3e-05 Score=73.34 Aligned_cols=27 Identities=44% Similarity=0.637 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++..++|.||+|+|||||+++|++.+
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999854
No 180
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.88 E-value=6.2e-07 Score=91.45 Aligned_cols=58 Identities=14% Similarity=0.003 Sum_probs=41.8
Q ss_pred CcceeeeeeEEEEeCCc------EEEEEcCCCChHHHHHHHHhCCCCC--CCCceeeecCCccccC
Q 044321 169 KHLTILKDVSGIIRPGR------MTLLLGPPGSVKTTLLLALAGKLDS--SLKNRCDISQHDVHIG 226 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge------~~~LlGpnGSGKSTLLk~LaG~l~~--~~~~~~~v~q~d~~~~ 226 (521)
+....|++++..+..++ +++|+||||||||||+++|++++.. .......+.+++.+++
T Consensus 71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~ 136 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYS 136 (321)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCC
T ss_pred cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccc
Confidence 33456666776666665 9999999999999999999998763 2333456666655443
No 181
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.83 E-value=6.1e-07 Score=87.10 Aligned_cols=33 Identities=24% Similarity=0.175 Sum_probs=29.2
Q ss_pred EEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 178 SGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 178 S~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
++++.+ ++++|+|||||||||||++|+|.+.|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~ 54 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD 54 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC
Confidence 566666 899999999999999999999988775
No 182
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.82 E-value=9.9e-06 Score=76.27 Aligned_cols=43 Identities=30% Similarity=0.116 Sum_probs=35.2
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHhCCCCCCCCceeeecCCccccC
Q 044321 180 IIRPGRMTLLLGPPGSVKTTLLLALAGKLDSSLKNRCDISQHDVHIG 226 (521)
Q Consensus 180 ~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~~~~~~~v~q~d~~~~ 226 (521)
.+++|.+++|+|+||||||||++.|++.+. ...++++++.+++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~~~~ 59 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDFFKP 59 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGGBCC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCccccC
Confidence 567899999999999999999999999763 2367777766554
No 183
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.77 E-value=5.8e-05 Score=77.15 Aligned_cols=28 Identities=32% Similarity=0.306 Sum_probs=24.2
Q ss_pred CCc--EEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 183 PGR--MTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 183 ~Ge--~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
++. .++|.||+|+|||||++.+++.+.+
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345 8999999999999999999987654
No 184
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.73 E-value=1e-05 Score=73.56 Aligned_cols=28 Identities=36% Similarity=0.468 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
.|++++|+||||||||||+++|++.+..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4678999999999999999999997643
No 185
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.71 E-value=4.5e-06 Score=81.19 Aligned_cols=37 Identities=38% Similarity=0.578 Sum_probs=33.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
..+++++++.+++| ++|+||||+|||||+++|++.+.
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC
Confidence 35889999999999 99999999999999999999764
No 186
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.71 E-value=6e-06 Score=79.57 Aligned_cols=30 Identities=27% Similarity=0.062 Sum_probs=27.1
Q ss_pred EEEEeCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 178 SGIIRPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 178 S~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
++..++|++++|.|+||||||||+++|+|.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 345578999999999999999999999996
No 187
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.70 E-value=4.5e-06 Score=82.62 Aligned_cols=37 Identities=38% Similarity=0.578 Sum_probs=33.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
..+++++++.+++| ++|+||||||||||+++|++.+.
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC
Confidence 35789999999999 99999999999999999999764
No 188
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.68 E-value=1.5e-05 Score=72.78 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=24.6
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+|++++|+||||||||||+++|++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 468999999999999999999999864
No 189
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.67 E-value=2e-05 Score=71.11 Aligned_cols=29 Identities=31% Similarity=0.430 Sum_probs=23.8
Q ss_pred eEEEEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 177 VSGIIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 177 VS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
.++.+.+| +++|+|||||||||||.+|.-
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 34455555 999999999999999999874
No 190
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.66 E-value=1.5e-05 Score=75.55 Aligned_cols=30 Identities=17% Similarity=0.259 Sum_probs=26.3
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 180 IIRPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 180 ~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
...+|++++|+||||||||||++.|++.++
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 334899999999999999999999999764
No 191
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.65 E-value=2.1e-05 Score=76.98 Aligned_cols=27 Identities=33% Similarity=0.266 Sum_probs=25.1
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHh---CCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALA---GKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~La---G~l 208 (521)
++|++++|+||||||||||+++|+ |+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~ 54 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWR 54 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 789999999999999999999999 753
No 192
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.60 E-value=3.6e-05 Score=78.32 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++..++|.||+|+|||||++.+++.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 357789999999999999999999855
No 193
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.59 E-value=1.6e-05 Score=74.86 Aligned_cols=30 Identities=27% Similarity=0.082 Sum_probs=26.9
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
.++|++++|+|+||||||||+++|++.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 467899999999999999999999997644
No 194
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.57 E-value=0.00076 Score=69.53 Aligned_cols=28 Identities=36% Similarity=0.449 Sum_probs=25.0
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 180 IIRPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 180 ~I~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
=+++|+++.|.|++|+|||||...++..
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999887753
No 195
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.48 E-value=2e-05 Score=80.31 Aligned_cols=39 Identities=21% Similarity=0.085 Sum_probs=34.3
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
++++++|.+++|++++|+||||+||||++..|++.+.+.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 457899999999999999999999999999999987654
No 196
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.45 E-value=0.00014 Score=70.03 Aligned_cols=64 Identities=17% Similarity=0.189 Sum_probs=40.1
Q ss_pred ChHHHHHHHHHHHHcCCCcEEEEeCCCh-hhHHHHH-HHHHHHHHHcC--CeEEEEEecChhHHHhhcCe
Q 044321 312 SGGQRKRVTTGEMLVGPAQALFMDEISN-STTFQIV-NSLRQFIHILE--GTILISLLQPAPETYDLFDD 377 (521)
Q Consensus 312 SGGqrQRvaIAraLv~~P~iLlLDEPTs-~~~~~i~-~~L~~l~~~~~--~t~ii~i~h~~~~~~~l~D~ 377 (521)
+.|.-.+.. ...+.+-+++++||... +.+.... ..++.+..... .+++++.|.+.+...++|+.
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence 345555543 33578899999999977 4665554 45555554432 35666777776666666654
No 197
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.44 E-value=0.00022 Score=70.86 Aligned_cols=27 Identities=44% Similarity=0.476 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
|...++|.||+|+|||||.++|++.+.
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 345789999999999999999998654
No 198
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.42 E-value=0.00065 Score=67.91 Aligned_cols=29 Identities=38% Similarity=0.564 Sum_probs=26.0
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 180 IIRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 180 ~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+.++..++|.||||+|||||+++|++.+
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 35678899999999999999999999865
No 199
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.41 E-value=0.00021 Score=73.47 Aligned_cols=55 Identities=5% Similarity=0.071 Sum_probs=33.8
Q ss_pred CCCChHHHHHHHHHHHHcCCCcEEEEe-CCChhhHHHH-HHHHHHHHHHc-CCeEEEEE
Q 044321 309 RGISGGQRKRVTTGEMLVGPAQALFMD-EISNSTTFQI-VNSLRQFIHIL-EGTILISL 364 (521)
Q Consensus 309 r~LSGGqrQRvaIAraLv~~P~iLlLD-EPTs~~~~~i-~~~L~~l~~~~-~~t~ii~i 364 (521)
..+|+|++|++. +.+...++-++++| ++..+.+.+. .+.+..+.... +..++++.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~ 287 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVI 287 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEE
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 358999998876 55556778889999 8776544332 33333333322 45555554
No 200
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.38 E-value=0.00076 Score=67.98 Aligned_cols=28 Identities=25% Similarity=0.209 Sum_probs=25.3
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
+-+++|+++.|.||+|+|||||+..++.
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999999988774
No 201
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.38 E-value=0.00019 Score=81.81 Aligned_cols=31 Identities=39% Similarity=0.525 Sum_probs=28.4
Q ss_pred EEEeCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 179 GIIRPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 179 ~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
+.+++|+.++|+||||+|||||+++|+|.+.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 4688999999999999999999999999764
No 202
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.37 E-value=2.8e-05 Score=82.45 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+..+.|.||+|+|||||+++|++.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999854
No 203
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.35 E-value=8.1e-05 Score=71.90 Aligned_cols=38 Identities=24% Similarity=0.203 Sum_probs=27.6
Q ss_pred eeeeeEEEEe---CCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 173 ILKDVSGIIR---PGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 173 iL~dVS~~I~---~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
-|.++|+.+. +|.+++|.||+||||||+++.|+..+.+
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4677777776 9999999999999999999999997754
No 204
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.35 E-value=0.00021 Score=73.90 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
.++|+|+||||||||++.|+|...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 499999999999999999999753
No 205
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.33 E-value=3.3e-05 Score=84.27 Aligned_cols=32 Identities=34% Similarity=0.351 Sum_probs=29.5
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 180 IIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 180 ~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
.+++|++++|+|+||||||||+++|+|.+.+.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~ 396 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM 396 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc
Confidence 57899999999999999999999999988764
No 206
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.32 E-value=0.0001 Score=69.71 Aligned_cols=29 Identities=31% Similarity=0.430 Sum_probs=23.6
Q ss_pred eEEEEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 177 VSGIIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 177 VS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
.++.+.+| +++|+|||||||||++.+|.-
T Consensus 17 ~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 34455554 999999999999999999864
No 207
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.30 E-value=0.00045 Score=73.03 Aligned_cols=28 Identities=32% Similarity=0.170 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
++.+++++|||||||||++..|++.+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999987654
No 208
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.28 E-value=0.00011 Score=68.09 Aligned_cols=32 Identities=28% Similarity=0.281 Sum_probs=26.4
Q ss_pred eeEEEEeCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 176 DVSGIIRPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 176 dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999875
No 209
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.27 E-value=4.2e-05 Score=82.70 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=32.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
...++++++.+.+| +++|+|+|||||||||.+|.+.+
T Consensus 48 f~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp BTTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred ccceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 34678899999999 99999999999999999996653
No 210
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.25 E-value=0.00012 Score=69.43 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+.+++|+|||||||||++++|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999864
No 211
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.25 E-value=3.7e-05 Score=78.76 Aligned_cols=40 Identities=23% Similarity=0.171 Sum_probs=35.5
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
..+++++++.+.+|.+++|+|+||+|||||++.|+|.+.+
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3578888888999999999999999999999999987644
No 212
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.23 E-value=0.00014 Score=67.47 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
.++|+|+||||||||++.|+|...+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999997653
No 213
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.23 E-value=0.00013 Score=66.76 Aligned_cols=28 Identities=36% Similarity=0.330 Sum_probs=24.8
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
++|++++|+|++||||||++++|++.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999999998653
No 214
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.22 E-value=0.0016 Score=62.03 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=38.3
Q ss_pred cCCCcEEEEeCCCh--------hhHHHHHHHHHHHHHHcCCeEEEEEecChh---------HHHhhcCeEEEEe
Q 044321 326 VGPAQALFMDEISN--------STTFQIVNSLRQFIHILEGTILISLLQPAP---------ETYDLFDDIILIS 382 (521)
Q Consensus 326 v~~P~iLlLDEPTs--------~~~~~i~~~L~~l~~~~~~t~ii~i~h~~~---------~~~~l~D~VivL~ 382 (521)
..+|+++++|-.+. ....++...|+.++++.+.+++++.+...+ .....+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 46889999998554 234467777888888777777776543221 1345789988885
No 215
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.20 E-value=0.00014 Score=68.45 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=26.1
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 180 IIRPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 180 ~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
...+|.+++|+||||||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999999988663
No 216
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.20 E-value=0.00099 Score=65.37 Aligned_cols=28 Identities=46% Similarity=0.644 Sum_probs=24.2
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+.++.-++|.||+|+|||||+++|+..+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3456679999999999999999999865
No 217
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.19 E-value=0.00095 Score=70.64 Aligned_cols=37 Identities=24% Similarity=0.487 Sum_probs=31.7
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
...|+.+.+-+++|+++.|.|+||+|||||+..++..
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~ 223 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQN 223 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3457777777999999999999999999999888763
No 218
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.15 E-value=0.00057 Score=65.91 Aligned_cols=53 Identities=17% Similarity=0.191 Sum_probs=38.1
Q ss_pred CCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEe---------cChhHHHhhcCeEEEEe
Q 044321 328 PAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLL---------QPAPETYDLFDDIILIS 382 (521)
Q Consensus 328 ~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~---------h~~~~~~~l~D~VivL~ 382 (521)
+++++++||.-. ++.+.++.+..+.. .+..+|++-+ ..++.+..++|.|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999754 33446667777665 3666666655 45677889999999975
No 219
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.09 E-value=0.0002 Score=66.54 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|+||||||||++.|+|..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999974
No 220
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.06 E-value=0.0055 Score=61.88 Aligned_cols=27 Identities=44% Similarity=0.613 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.|..-++|.||+|+|||||.++++..+
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 466789999999999999999999854
No 221
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.05 E-value=0.00029 Score=72.36 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=27.8
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
..+|+++++.++ .++|+|++|||||||++.|+|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 468999999998 8999999999999999999994
No 222
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.04 E-value=0.00016 Score=75.16 Aligned_cols=33 Identities=33% Similarity=0.527 Sum_probs=31.2
Q ss_pred eeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 176 DVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 176 dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
|+++.|.+|+.++|+||+|+|||||++.|++.+
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999998854
No 223
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.04 E-value=0.00028 Score=64.14 Aligned_cols=27 Identities=37% Similarity=0.539 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++|..++|+|+||+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999999854
No 224
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.03 E-value=0.0022 Score=67.15 Aligned_cols=28 Identities=39% Similarity=0.521 Sum_probs=23.5
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++|-.=++|.||||+|||+|.++||+..
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 4444558999999999999999999854
No 225
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.02 E-value=0.00024 Score=66.30 Aligned_cols=21 Identities=24% Similarity=0.139 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 044321 186 MTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG 206 (521)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999999
No 226
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.01 E-value=0.00095 Score=67.05 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+..+.|.||+|+|||||+++|++.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4578999999999999999999854
No 227
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.99 E-value=0.00028 Score=65.15 Aligned_cols=35 Identities=31% Similarity=0.342 Sum_probs=20.9
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.+|+++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4788999998887 6789999999999999999874
No 228
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.99 E-value=0.0051 Score=63.57 Aligned_cols=27 Identities=44% Similarity=0.569 Sum_probs=24.2
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 180 IIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 180 ~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
-+++|+++.|.||+|+|||||...++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 578999999999999999999977764
No 229
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.96 E-value=0.00032 Score=72.09 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=25.3
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
+++.+++|+|+||||||||++.|+|.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 35779999999999999999999996544
No 230
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.96 E-value=0.0001 Score=80.23 Aligned_cols=38 Identities=29% Similarity=0.472 Sum_probs=33.2
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
.+++++++.+ +|+.++|+||||+|||||+++|++.+.+
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4667777777 8999999999999999999999997754
No 231
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.93 E-value=9.6e-05 Score=75.10 Aligned_cols=41 Identities=29% Similarity=0.580 Sum_probs=36.0
Q ss_pred CcceeeeeeEEEEeCCcE--EEEEcCCCChHHHHHHHHhCCCC
Q 044321 169 KHLTILKDVSGIIRPGRM--TLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 169 ~~~~iL~dVS~~I~~Ge~--~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
++..+++.++..|+.|++ ++|.||||+||||+++++++.+.
T Consensus 29 g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 345688888999999998 99999999999999999999653
No 232
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.91 E-value=9e-05 Score=69.11 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=30.2
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 57888888888775 689999999999999999873
No 233
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.89 E-value=0.00011 Score=75.69 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=32.3
Q ss_pred eeeeeeEEEEeCCcE--EEEEcCCCChHHHHHHHHhCCC
Q 044321 172 TILKDVSGIIRPGRM--TLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~--~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 366777788888888 9999999999999999999965
No 234
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.88 E-value=0.00017 Score=77.77 Aligned_cols=36 Identities=39% Similarity=0.615 Sum_probs=32.6
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
.+++++++.+++| ++|+||||+|||||+++|+|...
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC
Confidence 4688899999999 99999999999999999999764
No 235
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.87 E-value=0.00043 Score=63.41 Aligned_cols=26 Identities=38% Similarity=0.590 Sum_probs=22.7
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36788999999999999999999853
No 236
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.86 E-value=0.00046 Score=63.56 Aligned_cols=29 Identities=45% Similarity=0.532 Sum_probs=25.7
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
..+|.+++|+|++||||||+.+.|++.+.
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34789999999999999999999998654
No 237
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.86 E-value=0.00055 Score=70.67 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=26.4
Q ss_pred eeeeEEEEeCCcEEEEEcCCCChHHHHHHHHh
Q 044321 174 LKDVSGIIRPGRMTLLLGPPGSVKTTLLLALA 205 (521)
Q Consensus 174 L~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~La 205 (521)
+++..+.+.+| +++|+|||||||||||.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 35667777775 99999999999999999976
No 238
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.00088 Score=71.17 Aligned_cols=28 Identities=43% Similarity=0.605 Sum_probs=24.3
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+++-.=++|.||||+|||+|.++||+..
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 4566678999999999999999999854
No 239
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.85 E-value=0.00039 Score=65.59 Aligned_cols=30 Identities=30% Similarity=0.243 Sum_probs=26.7
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 180 IIRPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 180 ~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
.+++|.+++|+|++||||||+.+.|++.+.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 356789999999999999999999998764
No 240
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.84 E-value=0.00042 Score=64.72 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
..+++|+|+||||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999865
No 241
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.83 E-value=0.00035 Score=70.15 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+..++|+|+||+|||||++.|.|..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3489999999999999999999963
No 242
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.82 E-value=0.00058 Score=61.34 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|+||+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 243
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.002 Score=68.02 Aligned_cols=28 Identities=43% Similarity=0.591 Sum_probs=24.3
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+++-.=++|.||||+|||+|.++||+..
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 4556678999999999999999999854
No 244
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.79 E-value=0.00068 Score=61.58 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998653
No 245
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.0028 Score=67.03 Aligned_cols=28 Identities=46% Similarity=0.733 Sum_probs=24.5
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++|-.=++|.||||+|||+|.++||+..
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 5566779999999999999999999854
No 246
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.77 E-value=0.00063 Score=61.11 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998754
No 247
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.77 E-value=0.0095 Score=58.87 Aligned_cols=26 Identities=42% Similarity=0.580 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++.-++|.||+|+|||||.++|+..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45578999999999999999988754
No 248
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.77 E-value=0.0004 Score=67.41 Aligned_cols=35 Identities=40% Similarity=0.690 Sum_probs=24.9
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
.++++++.++.| ++|.||||+|||||+++|++.+.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 345556656555 89999999999999999998653
No 249
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.76 E-value=0.018 Score=61.57 Aligned_cols=36 Identities=22% Similarity=0.164 Sum_probs=29.6
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
..-|+.+.+-+.+|+++.|.|+||+|||||+.-++-
T Consensus 229 ~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 229 CTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp CTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 345666655699999999999999999999876654
No 250
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.67 E-value=0.00087 Score=61.26 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
|.+++|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998744
No 251
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.67 E-value=0.0028 Score=64.23 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
..+..+.|.||+|+|||||++.++..+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 346689999999999999999998754
No 252
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.66 E-value=0.00078 Score=61.82 Aligned_cols=27 Identities=37% Similarity=0.443 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 457789999999999999999998643
No 253
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.62 E-value=0.0036 Score=64.18 Aligned_cols=27 Identities=41% Similarity=0.599 Sum_probs=22.9
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+..-++|.||+|+|||||.++|+..+
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 345568899999999999999999854
No 254
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.61 E-value=0.00089 Score=64.30 Aligned_cols=28 Identities=21% Similarity=0.162 Sum_probs=24.5
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-.+|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578899999999999999999999744
No 255
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.60 E-value=0.0046 Score=70.14 Aligned_cols=28 Identities=43% Similarity=0.687 Sum_probs=24.3
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++|-.-++|.||+|+|||||.++|++.+
T Consensus 235 ~~~p~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4555678999999999999999999865
No 256
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.59 E-value=0.00031 Score=68.52 Aligned_cols=30 Identities=23% Similarity=0.171 Sum_probs=26.2
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 180 IIRPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 180 ~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
...++.++.|+|+|||||||+.+.|+..+.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 345778999999999999999999998764
No 257
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.003 Score=66.54 Aligned_cols=28 Identities=39% Similarity=0.599 Sum_probs=24.2
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+++-.=++|.||||+|||+|.++||+..
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHHh
Confidence 4555679999999999999999999854
No 258
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.58 E-value=0.00097 Score=60.97 Aligned_cols=23 Identities=39% Similarity=0.444 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999953
No 259
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.57 E-value=0.0011 Score=60.33 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 260
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.57 E-value=0.001 Score=59.38 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=18.2
Q ss_pred EEEEEcCCCChHHHHHHHH
Q 044321 186 MTLLLGPPGSVKTTLLLAL 204 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~L 204 (521)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 261
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.51 E-value=0.015 Score=70.64 Aligned_cols=34 Identities=35% Similarity=0.408 Sum_probs=28.3
Q ss_pred eeeeeE--EEEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 173 ILKDVS--GIIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 173 iL~dVS--~~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
-|+.+- +=+++|+++.|.||||+|||||...++.
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 466654 3599999999999999999999877765
No 262
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.50 E-value=0.00037 Score=71.88 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=28.4
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+.++++++|.| +|+|++|+|||||++.|.|..
T Consensus 29 ~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 29 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 345788888877 999999999999999998853
No 263
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.50 E-value=0.0013 Score=60.10 Aligned_cols=26 Identities=27% Similarity=0.117 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999999998644
No 264
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.49 E-value=0.0011 Score=61.24 Aligned_cols=25 Identities=32% Similarity=0.223 Sum_probs=22.4
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
.+++|+|+||||||||++.|.+.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 5789999999999999999998654
No 265
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.46 E-value=0.0014 Score=60.80 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999987554
No 266
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.46 E-value=0.0013 Score=63.83 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.5
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-+++|.||+||||||+.+.|+..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999643
No 267
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.45 E-value=0.006 Score=64.61 Aligned_cols=37 Identities=22% Similarity=0.183 Sum_probs=31.1
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
+..-|+.+.+-+.+|+++.|.|+||+|||||+.-++.
T Consensus 183 G~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 183 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp SCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred CcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 3456777777799999999999999999999877765
No 268
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.44 E-value=0.0015 Score=60.44 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999866
No 269
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.44 E-value=0.0014 Score=59.92 Aligned_cols=25 Identities=48% Similarity=0.383 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.+..++|.|++||||||+.+.|+-.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999853
No 270
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.44 E-value=0.0014 Score=59.16 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.3
Q ss_pred cEEEEEcCCCChHHHHHHHHhC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG 206 (521)
.++.|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 271
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.43 E-value=0.0039 Score=65.78 Aligned_cols=28 Identities=50% Similarity=0.716 Sum_probs=24.1
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+++-.=++|.||||+|||+|.++||+.+
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4556669999999999999999999854
No 272
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.39 E-value=0.0016 Score=60.20 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998553
No 273
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.38 E-value=0.0015 Score=59.95 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998643
No 274
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.38 E-value=0.0014 Score=64.09 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+++|+||||||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999999854
No 275
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.38 E-value=0.023 Score=69.05 Aligned_cols=29 Identities=34% Similarity=0.419 Sum_probs=26.4
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 180 IIRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 180 ~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
=+++|+++.|.||||+|||||+..++...
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 59999999999999999999999987743
No 276
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.36 E-value=0.0017 Score=60.51 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+|.+++|.|++||||||+.+.|+-.+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998643
No 277
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.35 E-value=0.0011 Score=69.93 Aligned_cols=35 Identities=26% Similarity=0.095 Sum_probs=31.4
Q ss_pred eeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCCC
Q 044321 175 KDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDSS 211 (521)
Q Consensus 175 ~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~~ 211 (521)
+++++. +|++++|+|+|||||||++..|++.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 577887 89999999999999999999999987654
No 278
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.34 E-value=0.0019 Score=60.97 Aligned_cols=24 Identities=33% Similarity=0.259 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999997
No 279
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.34 E-value=0.0015 Score=61.07 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+.+.|+||||||||||++.|....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 357899999999999999987644
No 280
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.31 E-value=0.00064 Score=62.73 Aligned_cols=28 Identities=32% Similarity=0.477 Sum_probs=23.8
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++++.+++|.|++||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456789999999999999999998643
No 281
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.30 E-value=0.0016 Score=59.14 Aligned_cols=23 Identities=43% Similarity=0.431 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|+|||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998754
No 282
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.30 E-value=0.0019 Score=60.20 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++|.+++|.|++||||||+.+.|+-.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998643
No 283
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.29 E-value=0.002 Score=58.84 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
+.+++|.|++||||||+.+.|+-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999753
No 284
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.25 E-value=0.0018 Score=64.59 Aligned_cols=27 Identities=37% Similarity=0.348 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
..|.++.|.||||||||||.+.|+..+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999998654
No 285
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.24 E-value=0.002 Score=58.79 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+++|.|++||||||+.+.|+-.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 286
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.21 E-value=0.0021 Score=61.61 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
.++|+|++|+|||||++.|+|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 479999999999999999999643
No 287
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.19 E-value=0.0025 Score=60.19 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++|-.++|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998644
No 288
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.19 E-value=0.03 Score=57.70 Aligned_cols=27 Identities=48% Similarity=0.684 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++.-++|.||+|+|||||.++|+...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999998754
No 289
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.18 E-value=0.00098 Score=66.95 Aligned_cols=35 Identities=26% Similarity=0.082 Sum_probs=30.5
Q ss_pred ee-eEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 175 KD-VSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 175 ~d-VS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
++ +++.++ |++++++|+||+||||++..|++.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45 777776 999999999999999999999987654
No 290
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.17 E-value=0.0011 Score=61.83 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988654
No 291
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.13 E-value=0.0022 Score=62.94 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999964
No 292
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.11 E-value=0.0028 Score=58.58 Aligned_cols=23 Identities=26% Similarity=0.160 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHHhCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.+++|.|++||||||+.+.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 47899999999999999999985
No 293
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.11 E-value=0.0018 Score=67.57 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=26.0
Q ss_pred EEEEeCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 178 SGIIRPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 178 S~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-..+..|..++|+|+||+|||||+++|+|.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 345677889999999999999999999996
No 294
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.09 E-value=0.0021 Score=58.46 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=18.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998644
No 295
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.03 E-value=0.052 Score=66.90 Aligned_cols=35 Identities=34% Similarity=0.393 Sum_probs=28.5
Q ss_pred eeeeeE--EEEeCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 173 ILKDVS--GIIRPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 173 iL~dVS--~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-|+.+- +=+++|+++.|.||||+|||||+..++..
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~ 406 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 455553 35999999999999999999998877653
No 296
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.02 E-value=0.0031 Score=59.94 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=22.2
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++.+++|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999998643
No 297
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.00 E-value=0.021 Score=61.26 Aligned_cols=28 Identities=43% Similarity=0.687 Sum_probs=23.8
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+.+..-++|.||+|+|||+|.++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3455679999999999999999998754
No 298
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.00 E-value=0.0072 Score=69.13 Aligned_cols=24 Identities=46% Similarity=0.555 Sum_probs=21.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
..++|.||+|+|||+|.++|+..+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999865
No 299
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.98 E-value=0.0038 Score=58.01 Aligned_cols=25 Identities=52% Similarity=0.659 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+-+++|.|++||||||+.+.|+..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998643
No 300
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.97 E-value=0.0034 Score=57.65 Aligned_cols=23 Identities=35% Similarity=0.300 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 301
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.96 E-value=0.003 Score=66.67 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.9
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-.++|+|+||+|||||++.|+|..
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 378999999999999999999964
No 302
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.95 E-value=0.0031 Score=55.81 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 37899999999999999998743
No 303
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.93 E-value=0.0037 Score=55.70 Aligned_cols=23 Identities=48% Similarity=0.627 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-++|+|++|+|||||++.|.|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47899999999999999999853
No 304
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.91 E-value=0.0038 Score=55.23 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999974
No 305
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.0032 Score=57.44 Aligned_cols=24 Identities=33% Similarity=0.410 Sum_probs=21.4
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-.++|+|++|+|||||++.|++..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999853
No 306
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.89 E-value=0.0038 Score=58.57 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999754
No 307
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.89 E-value=0.0033 Score=55.50 Aligned_cols=22 Identities=9% Similarity=0.178 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 308
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.84 E-value=0.0042 Score=56.77 Aligned_cols=23 Identities=35% Similarity=0.216 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998644
No 309
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.84 E-value=0.0035 Score=60.11 Aligned_cols=29 Identities=31% Similarity=0.417 Sum_probs=24.0
Q ss_pred EEeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 180 IIRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 180 ~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+++..++.|+|||||||+|..+.|+-.+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34456788999999999999999998643
No 310
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.83 E-value=0.0037 Score=59.15 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+.++.|+||+||||||+.+.|+-.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998644
No 311
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.83 E-value=0.0037 Score=57.05 Aligned_cols=24 Identities=42% Similarity=0.487 Sum_probs=21.0
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998643
No 312
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.83 E-value=0.0037 Score=54.92 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998864
No 313
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.83 E-value=0.0042 Score=55.05 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=19.5
Q ss_pred EEEEcCCCChHHHHHHHHhCCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++|+|++|+|||||++.+++..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999998743
No 314
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.83 E-value=0.004 Score=55.69 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998853
No 315
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.83 E-value=0.0047 Score=58.11 Aligned_cols=26 Identities=27% Similarity=0.287 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++..++|.||+|+|||||++.++..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998743
No 316
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.82 E-value=0.0039 Score=57.43 Aligned_cols=25 Identities=24% Similarity=0.109 Sum_probs=22.1
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
.+++|+|++|||||||+..|+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999988654
No 317
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.82 E-value=0.0045 Score=60.44 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999864
No 318
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.82 E-value=0.0043 Score=56.54 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
..+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999864
No 319
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.82 E-value=0.0039 Score=56.09 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=20.9
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998643
No 320
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.81 E-value=0.0039 Score=57.81 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999999999999854
No 321
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.80 E-value=0.0043 Score=58.23 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999997643
No 322
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.79 E-value=0.0036 Score=54.79 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999874
No 323
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.79 E-value=0.0038 Score=54.85 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 324
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.78 E-value=0.0046 Score=57.36 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
..+++|.|++||||||+.+.|+-.+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3478999999999999999998643
No 325
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.78 E-value=0.0039 Score=54.67 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999853
No 326
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.78 E-value=0.014 Score=54.75 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=38.3
Q ss_pred CCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEe---------cChhHHHhhcCeEEEEe
Q 044321 327 GPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLL---------QPAPETYDLFDDIILIS 382 (521)
Q Consensus 327 ~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~---------h~~~~~~~l~D~VivL~ 382 (521)
.+.+++++||.-- .+.+.++.++.+... +..+|++-. ..++.+..++|.|.-|.
T Consensus 80 ~~~dvViIDEaqf-l~~~~v~~l~~l~~~-~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 80 EDTEVIAIDEVQF-FDDEIVEIVNKIAES-GRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TTCSEEEECSGGG-SCTHHHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred ccCCEEEEECCCC-CCHHHHHHHHHHHhC-CCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 3579999999433 334457777777653 666666655 55678889999998875
No 327
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.76 E-value=0.005 Score=55.41 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=21.4
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+.++|.|++||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998643
No 328
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=95.75 E-value=0.0031 Score=70.26 Aligned_cols=32 Identities=38% Similarity=0.163 Sum_probs=26.3
Q ss_pred EEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 178 SGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 178 S~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
|+.+++|+.++|+|++|+|||||++.|++...
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~ 34 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTG 34 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcC
Confidence 45678899999999999999999999997543
No 329
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.74 E-value=0.0041 Score=54.95 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998854
No 330
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.74 E-value=0.0061 Score=54.48 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.-.++|+|++|+|||||++.|.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999884
No 331
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.73 E-value=0.0049 Score=60.95 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999953
No 332
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.72 E-value=0.0077 Score=60.89 Aligned_cols=37 Identities=27% Similarity=0.220 Sum_probs=32.8
Q ss_pred cceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 170 HLTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 170 ~~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
....+++..+.+ .|.-++|+|+||+|||||...|.+.
T Consensus 131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 346899988888 8999999999999999999999874
No 333
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.71 E-value=0.004 Score=55.04 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3789999999999999999874
No 334
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.71 E-value=0.0043 Score=56.47 Aligned_cols=22 Identities=50% Similarity=0.507 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999884
No 335
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.71 E-value=0.0043 Score=54.73 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998743
No 336
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.70 E-value=0.0053 Score=54.98 Aligned_cols=23 Identities=30% Similarity=0.166 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998643
No 337
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.69 E-value=0.0044 Score=54.86 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 338
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.69 E-value=0.0044 Score=56.53 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.|.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999984
No 339
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.69 E-value=0.0054 Score=59.30 Aligned_cols=25 Identities=40% Similarity=0.522 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
++-.++|+||+||||||+.+.|+-.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999853
No 340
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.69 E-value=0.0045 Score=55.34 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 341
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.66 E-value=0.0046 Score=55.31 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.+.+.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
No 342
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.66 E-value=0.0046 Score=54.49 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999874
No 343
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.64 E-value=0.0063 Score=54.63 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+..+.|.||+|+|||||++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34678999999999999999998754
No 344
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.62 E-value=0.0049 Score=55.91 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.|.|..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58899999999999999999854
No 345
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.60 E-value=0.0047 Score=55.17 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999885
No 346
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.59 E-value=0.0051 Score=55.63 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=19.7
Q ss_pred EEEEcCCCChHHHHHHHHhCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~ 207 (521)
++|+|++|+|||||++.+.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 689999999999999999985
No 347
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.57 E-value=0.0051 Score=55.83 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999999853
No 348
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.56 E-value=0.0052 Score=54.17 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.|.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
No 349
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.56 E-value=0.006 Score=54.53 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999999873
No 350
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.55 E-value=0.0058 Score=59.24 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|.+|+|||||++.|.|.-
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999853
No 351
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.55 E-value=0.0053 Score=55.34 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998743
No 352
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.51 E-value=0.0063 Score=57.50 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
|-.++|+|++||||||+.+.|+-.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998644
No 353
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.50 E-value=0.0041 Score=56.00 Aligned_cols=21 Identities=43% Similarity=0.480 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 044321 186 MTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG 206 (521)
.++|+|++|+|||||++.+.+
T Consensus 20 ~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 354
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.49 E-value=0.0056 Score=55.27 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 355
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.48 E-value=0.0058 Score=54.13 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999763
No 356
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.46 E-value=0.0059 Score=55.75 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.|.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999999884
No 357
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.45 E-value=0.0063 Score=55.19 Aligned_cols=24 Identities=33% Similarity=0.220 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
-++|+|++|+|||||++.|.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 468999999999999999998654
No 358
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.43 E-value=0.0072 Score=57.47 Aligned_cols=22 Identities=36% Similarity=0.363 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
+++|.|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999854
No 359
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.42 E-value=0.011 Score=56.49 Aligned_cols=54 Identities=13% Similarity=0.236 Sum_probs=39.0
Q ss_pred CCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEe---------cChhHHHhhcCeEEEEe
Q 044321 327 GPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLL---------QPAPETYDLFDDIILIS 382 (521)
Q Consensus 327 ~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~---------h~~~~~~~l~D~VivL~ 382 (521)
.+.++++.||. -..+.++++.+..++ ..+..+++.-. ..+..+..+||.|.-|.
T Consensus 100 ~~~dvV~IDEa-QFf~~~~v~~l~~la-~~gi~Vi~~GLd~DF~~~~F~~~~~Ll~~Ad~v~kl~ 162 (219)
T 3e2i_A 100 TNVDVIGIDEV-QFFDDEIVSIVEKLS-ADGHRVIVAGLDMDFRGEPFEPMPKLMAVSEQVTKLQ 162 (219)
T ss_dssp TTCSEEEECCG-GGSCTHHHHHHHHHH-HTTCEEEEEEESBCTTSCBCTTHHHHHHHCSEEEEEC
T ss_pred cCCCEEEEech-hcCCHHHHHHHHHHH-HCCCEEEEeecccccccCCCccHHHHHHhcceEEEee
Confidence 47899999993 234446778888887 45777777644 24567788999999885
No 360
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.41 E-value=0.099 Score=55.25 Aligned_cols=28 Identities=32% Similarity=0.360 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
++.+++++|++|+||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 5689999999999999999999875543
No 361
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.41 E-value=0.0059 Score=54.42 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 362
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.40 E-value=0.0064 Score=53.55 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=18.8
Q ss_pred EEEEcCCCChHHHHHHHHhC
Q 044321 187 TLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG 206 (521)
++|+|++|+|||||++.+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999976
No 363
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.40 E-value=0.0065 Score=59.37 Aligned_cols=22 Identities=45% Similarity=0.588 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|||||||++.|+|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5799999999999999999995
No 364
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.38 E-value=0.032 Score=53.25 Aligned_cols=53 Identities=11% Similarity=0.204 Sum_probs=39.1
Q ss_pred CCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEe---------cChhHHHhhcCeEEEEe
Q 044321 328 PAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLL---------QPAPETYDLFDDIILIS 382 (521)
Q Consensus 328 ~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~---------h~~~~~~~l~D~VivL~ 382 (521)
+.+++++||.-- .+.+.++.+..+.. .+..+|+.-. ..++.+..+||.|.-|.
T Consensus 101 ~~dvViIDEaQF-~~~~~V~~l~~l~~-~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGDIVEVVQVLAN-RGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTTHHHHHHHHHH-TTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHHHHHHHHHHhh-CCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999543 33344577777665 3667777666 67888999999999886
No 365
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.38 E-value=0.0066 Score=54.12 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998743
No 366
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.38 E-value=0.0077 Score=57.09 Aligned_cols=23 Identities=39% Similarity=0.562 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++.|+|||||||+|..+.|+-.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999998743
No 367
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.37 E-value=0.0088 Score=55.40 Aligned_cols=24 Identities=42% Similarity=0.408 Sum_probs=21.6
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
..+.|.||+|+|||||+++|+..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999999998754
No 368
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.36 E-value=0.0067 Score=54.33 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.|.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998743
No 369
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.36 E-value=0.0067 Score=54.49 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4789999999999999999874
No 370
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.34 E-value=0.0078 Score=60.32 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|.+|+|||||++.|.|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 371
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.34 E-value=0.0079 Score=60.35 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.|.
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7899999999999999999995
No 372
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.33 E-value=0.007 Score=54.24 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 373
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.33 E-value=0.0079 Score=58.24 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=21.3
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998754
No 374
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.31 E-value=0.008 Score=54.38 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
=.++|+|++|+|||||++.+.+..
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999854
No 375
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.30 E-value=0.0069 Score=56.48 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999854
No 376
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.30 E-value=0.084 Score=65.10 Aligned_cols=36 Identities=33% Similarity=0.337 Sum_probs=31.9
Q ss_pred cceeeeeeE--EEEeCCcEEEEEcCCCChHHHHHHHHh
Q 044321 170 HLTILKDVS--GIIRPGRMTLLLGPPGSVKTTLLLALA 205 (521)
Q Consensus 170 ~~~iL~dVS--~~I~~Ge~~~LlGpnGSGKSTLLk~La 205 (521)
....|+++. +-+++|+.++|.||+|+|||||...+.
T Consensus 1065 Gi~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A 1065 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp SCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred CcHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 445788988 589999999999999999999998876
No 377
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.29 E-value=0.008 Score=56.50 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998643
No 378
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.29 E-value=0.0069 Score=62.62 Aligned_cols=26 Identities=19% Similarity=0.098 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+..++|+||||||||||++.|++..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998754
No 379
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.29 E-value=0.0072 Score=54.91 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|++.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 380
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.27 E-value=0.0088 Score=56.01 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-+++|.|++||||||+.+.|+-.
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999864
No 381
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.26 E-value=0.0097 Score=56.81 Aligned_cols=26 Identities=42% Similarity=0.592 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998643
No 382
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.26 E-value=0.012 Score=55.62 Aligned_cols=38 Identities=21% Similarity=0.098 Sum_probs=30.2
Q ss_pred ceeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 171 LTILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 171 ~~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
...++..-.. ..|..++|+||+|||||||...|+....
T Consensus 22 ~~~lHa~~v~-~~g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 22 RRSMHGVLVD-IYGLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp CCCEESEEEE-ETTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred ceeeeEEEEE-ECCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3456665555 4688999999999999999999987643
No 383
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.26 E-value=0.007 Score=54.57 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.+.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 384
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.26 E-value=0.052 Score=60.96 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|.||+|+|||+|.++|+..+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 68999999999999999999855
No 385
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.25 E-value=0.0075 Score=59.19 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.|.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999874
No 386
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.24 E-value=0.0075 Score=55.34 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.|.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 387
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.24 E-value=0.0076 Score=55.43 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 388
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.23 E-value=0.0069 Score=55.99 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5799999999999999999874
No 389
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.20 E-value=0.0076 Score=55.00 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5799999999999999999873
No 390
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.19 E-value=0.009 Score=58.39 Aligned_cols=22 Identities=41% Similarity=0.475 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|+|.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4799999999999999999984
No 391
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.19 E-value=0.008 Score=54.70 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-++|+|++|+|||||++.|.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998743
No 392
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.19 E-value=0.0093 Score=54.85 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998853
No 393
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.18 E-value=0.0081 Score=54.65 Aligned_cols=23 Identities=39% Similarity=0.522 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998743
No 394
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.18 E-value=0.0081 Score=53.92 Aligned_cols=25 Identities=40% Similarity=0.537 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+..+.|.||+|+|||||++.++..+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999998754
No 395
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.16 E-value=0.0088 Score=57.86 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|||||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 396
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.15 E-value=0.0077 Score=62.27 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|+||+|||||+++|+|.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999985
No 397
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.15 E-value=0.0079 Score=54.58 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4689999999999999999874
No 398
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.14 E-value=0.0086 Score=53.93 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4689999999999999999874
No 399
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.12 E-value=0.0082 Score=54.95 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-++|+|++|+|||||++.|.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 400
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.11 E-value=0.0088 Score=53.71 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
No 401
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.11 E-value=0.0095 Score=58.97 Aligned_cols=22 Identities=27% Similarity=0.234 Sum_probs=20.1
Q ss_pred cEEEEEcCCCChHHHHHHHHhC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG 206 (521)
.+++|.|++||||||+.+.|+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999983
No 402
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.10 E-value=0.006 Score=57.03 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999853
No 403
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.10 E-value=0.0093 Score=58.75 Aligned_cols=23 Identities=43% Similarity=0.492 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|.+|||||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999953
No 404
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.10 E-value=0.01 Score=58.64 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.3
Q ss_pred cEEEEEcCCCChHHHHHHHHhC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG 206 (521)
.++.|.|+|||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 405
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.09 E-value=0.009 Score=54.59 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=18.3
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 044321 186 MTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG 206 (521)
.++|+|++|+|||||++.+.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999976665
No 406
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.09 E-value=0.0097 Score=54.55 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.|.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 407
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.09 E-value=0.0087 Score=57.66 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=21.5
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
..+|.++.|.|++||||||+.+.|+-.+
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999998755
No 408
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.08 E-value=0.0099 Score=59.04 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|||||||++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999963
No 409
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.06 E-value=0.011 Score=56.67 Aligned_cols=27 Identities=44% Similarity=0.580 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+..-++|.||+|+|||||+++|+..+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445568999999999999999998754
No 410
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.05 E-value=0.0094 Score=55.77 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.|++..
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998754
No 411
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.04 E-value=0.0084 Score=54.63 Aligned_cols=23 Identities=35% Similarity=0.257 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.|.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998853
No 412
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.03 E-value=0.01 Score=53.84 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.+.+.
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999963
No 413
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.02 E-value=0.0098 Score=54.11 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.|.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999863
No 414
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.01 E-value=0.011 Score=53.95 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.|.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998843
No 415
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.01 E-value=0.0091 Score=55.08 Aligned_cols=23 Identities=22% Similarity=0.130 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-++|+|++|+|||||++.|.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 57899999999999999999853
No 416
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.00 E-value=0.011 Score=54.71 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.|.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 417
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.00 E-value=0.013 Score=54.43 Aligned_cols=23 Identities=35% Similarity=0.335 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|.||+|+|||||++.++..+
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999998754
No 418
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.99 E-value=0.0094 Score=53.56 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 044321 186 MTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG 206 (521)
.++|+|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 578999999999999999984
No 419
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.99 E-value=0.0093 Score=54.44 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.+.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4789999999999999999874
No 420
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.97 E-value=0.01 Score=53.85 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999998753
No 421
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.97 E-value=0.01 Score=54.74 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999873
No 422
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.97 E-value=0.012 Score=61.68 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=24.1
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-.+..++.|+|+|||||||+.+.|+..+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3457899999999999999999998643
No 423
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.97 E-value=0.0095 Score=55.02 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998743
No 424
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.96 E-value=0.011 Score=55.82 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.|.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999884
No 425
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.96 E-value=0.013 Score=55.70 Aligned_cols=28 Identities=36% Similarity=0.361 Sum_probs=24.2
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
.+|.+++|.|++||||||+++.|+-.+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999987654
No 426
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.95 E-value=0.01 Score=53.11 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 427
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.94 E-value=0.01 Score=54.12 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.|.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 428
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.94 E-value=0.012 Score=54.73 Aligned_cols=23 Identities=35% Similarity=0.374 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.|.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999843
No 429
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.93 E-value=0.011 Score=54.02 Aligned_cols=22 Identities=32% Similarity=0.211 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.|.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 430
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.93 E-value=0.01 Score=53.75 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999984
No 431
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.92 E-value=0.01 Score=54.75 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.+.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 432
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.89 E-value=0.011 Score=54.18 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.+.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999999874
No 433
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.87 E-value=0.011 Score=53.96 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998843
No 434
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.86 E-value=0.012 Score=60.68 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
|-.++|+|.||+|||||+++|+|.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 346899999999999999999984
No 435
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.86 E-value=0.011 Score=54.36 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.|.+.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5799999999999999999874
No 436
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.85 E-value=0.016 Score=59.16 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
++.+++|+||+|||||||...|+-.+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 456899999999999999999998764
No 437
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.85 E-value=0.014 Score=53.70 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
-++|+|++|+|||||++.+.|...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 578999999999999999998644
No 438
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.81 E-value=0.014 Score=53.58 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.+.+.
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 439
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.79 E-value=0.012 Score=57.93 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|.+|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999964
No 440
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.78 E-value=0.0089 Score=53.83 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=9.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999998763
No 441
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.78 E-value=0.0071 Score=60.31 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=19.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+-+++|.||+||||||+.+.|+..+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998743
No 442
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.76 E-value=0.012 Score=54.95 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.+.+.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999988764
No 443
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.75 E-value=0.015 Score=59.00 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=28.4
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
-|+.+-+-+.+|.++.|.||+|+|||||...++.
T Consensus 112 ~LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 112 VVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEEETTEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3444436799999999999999999999998875
No 444
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.74 E-value=0.013 Score=53.83 Aligned_cols=21 Identities=33% Similarity=0.351 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 044321 186 MTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG 206 (521)
.++|+|++|+|||||++.+.+
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999976
No 445
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.73 E-value=0.014 Score=54.60 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 446
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.73 E-value=0.0096 Score=53.35 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 447
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.73 E-value=0.012 Score=54.57 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 448
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.69 E-value=0.016 Score=56.13 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
+|.+++|.|++||||||+++.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987653
No 449
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.67 E-value=0.014 Score=53.35 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4789999999999999988864
No 450
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.65 E-value=0.013 Score=54.76 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.+.+.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999985
No 451
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.62 E-value=0.018 Score=53.35 Aligned_cols=54 Identities=13% Similarity=0.210 Sum_probs=34.2
Q ss_pred CCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEec---------ChhHHHhhcCeEEEEe
Q 044321 327 GPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQ---------PAPETYDLFDDIILIS 382 (521)
Q Consensus 327 ~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h---------~~~~~~~l~D~VivL~ 382 (521)
.+++++++||.-. .+...++.|..+... +..++++-+. ..+....++|.|.-|.
T Consensus 75 ~~~dvviIDE~Q~-~~~~~~~~l~~l~~~-~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 75 EDTRGVFIDEVQF-FNPSLFEVVKDLLDR-GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TTEEEEEECCGGG-SCTTHHHHHHHHHHT-TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECccc-CCHHHHHHHHHHHHC-CCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 3578999999543 223466777777654 5666665552 2244566788887764
No 452
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.60 E-value=0.014 Score=54.17 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998743
No 453
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.56 E-value=0.0047 Score=62.10 Aligned_cols=23 Identities=48% Similarity=0.790 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|.||+|+|||||+++|++.+
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999864
No 454
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.56 E-value=0.017 Score=54.20 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+-+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999998754
No 455
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.54 E-value=0.094 Score=50.64 Aligned_cols=53 Identities=13% Similarity=0.103 Sum_probs=37.9
Q ss_pred CCCcEEEEeCCChhhHHHHHHHHHHHHHHcCCeEEEEEec---------ChhHHHhhcCeEEEEe
Q 044321 327 GPAQALFMDEISNSTTFQIVNSLRQFIHILEGTILISLLQ---------PAPETYDLFDDIILIS 382 (521)
Q Consensus 327 ~~P~iLlLDEPTs~~~~~i~~~L~~l~~~~~~t~ii~i~h---------~~~~~~~l~D~VivL~ 382 (521)
.+.+++++||.--..+ +.+.++.+ ...+..+|++-+. .++.+..+||.|.-|.
T Consensus 89 ~~~dvViIDEaQF~~~--v~el~~~l-~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD--IVEFCEAM-ANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT--HHHHHHHH-HHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh--HHHHHHHH-HhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999544332 44444443 3457777777666 7788899999999985
No 456
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.52 E-value=0.014 Score=53.81 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999974
No 457
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.52 E-value=0.006 Score=69.41 Aligned_cols=33 Identities=33% Similarity=0.472 Sum_probs=29.0
Q ss_pred eEEEEeCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 177 VSGIIRPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 177 VS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
.++.+.+|+.++|+||||+|||||.++|++.+.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 356678999999999999999999999998653
No 458
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.50 E-value=0.019 Score=54.82 Aligned_cols=29 Identities=31% Similarity=0.288 Sum_probs=25.6
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKLDS 210 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l~~ 210 (521)
.+|.++.|.|++||||||+.+.|+-.+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36889999999999999999999986653
No 459
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.50 E-value=0.079 Score=60.06 Aligned_cols=28 Identities=39% Similarity=0.618 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
++..-++|.||||+|||.|.++|++...
T Consensus 509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~~ 536 (806)
T 3cf2_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCSCCEEESSTTSSHHHHHHHHHHTTT
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHhC
Confidence 4445588999999999999999999653
No 460
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.49 E-value=0.02 Score=54.54 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
+|.++.|-|++||||||+++.|+..+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987654
No 461
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.48 E-value=0.029 Score=51.98 Aligned_cols=34 Identities=21% Similarity=0.115 Sum_probs=26.7
Q ss_pred eeeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhC
Q 044321 172 TILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 172 ~iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
..++.. +.--.|.-++|.|+||+|||||...|..
T Consensus 5 ~~lHas-~v~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 5 QTWHAN-FLVIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEESE-EEEETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEE-EEEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 345544 4445789999999999999999988865
No 462
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.47 E-value=0.018 Score=58.86 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=22.0
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
.+++|.||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3789999999999999999997653
No 463
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.47 E-value=0.012 Score=57.19 Aligned_cols=28 Identities=14% Similarity=0.042 Sum_probs=24.2
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
+++.+++|.|+.||||||+.+.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4678999999999999999999988663
No 464
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.45 E-value=0.02 Score=54.85 Aligned_cols=26 Identities=19% Similarity=0.104 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
|.+++|-|+.||||||+.+.|+-.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 66899999999999999999997653
No 465
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.39 E-value=0.019 Score=57.04 Aligned_cols=26 Identities=15% Similarity=0.017 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+...++|.||+|+|||+|.++|+..+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34568888999999999999999854
No 466
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.38 E-value=0.0089 Score=55.72 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.|.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 467
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.38 E-value=0.016 Score=52.73 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 468
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.37 E-value=0.018 Score=56.00 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999853
No 469
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.37 E-value=0.02 Score=54.12 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999974
No 470
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.34 E-value=0.02 Score=50.44 Aligned_cols=25 Identities=24% Similarity=0.118 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+.-+.|.||+|+|||+|.++|....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 4458899999999999999998754
No 471
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.32 E-value=0.013 Score=53.13 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhC
Q 044321 186 MTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG 206 (521)
.++|+|++|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999965
No 472
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.29 E-value=0.019 Score=56.07 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999853
No 473
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.29 E-value=0.0092 Score=54.73 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=4.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.|.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999998874
No 474
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.29 E-value=0.021 Score=57.95 Aligned_cols=25 Identities=40% Similarity=0.565 Sum_probs=22.1
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
.+++|+||+|||||||.+.|+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998653
No 475
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.29 E-value=0.023 Score=57.46 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
+.+++|+||+|||||||...|+-.+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45789999999999999999987653
No 476
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.24 E-value=0.019 Score=53.82 Aligned_cols=23 Identities=35% Similarity=0.346 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+|++|+|||||++.+++..
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68899999999999999988743
No 477
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.23 E-value=0.021 Score=52.33 Aligned_cols=23 Identities=48% Similarity=0.678 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|.||+|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998643
No 478
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.21 E-value=0.019 Score=53.15 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.+.+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4799999999999999999873
No 479
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.18 E-value=0.0096 Score=57.70 Aligned_cols=22 Identities=55% Similarity=0.829 Sum_probs=20.0
Q ss_pred EEEEcCCCChHHHHHHHHhCCC
Q 044321 187 TLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 187 ~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++|.||+|+|||||+++|+...
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7899999999999999999853
No 480
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.17 E-value=0.026 Score=54.20 Aligned_cols=27 Identities=33% Similarity=0.177 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
+|.++.|.|++||||||+.+.|+..+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 578999999999999999999987553
No 481
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.16 E-value=0.02 Score=53.75 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.|.+.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
No 482
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=94.12 E-value=0.023 Score=55.69 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-.++|+|.||+|||||++.|.|..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCHHHHHHHHhccc
Confidence 468999999999999999999864
No 483
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.09 E-value=0.025 Score=57.32 Aligned_cols=27 Identities=37% Similarity=0.672 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKLD 209 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l~ 209 (521)
+|..++|.||+|+|||||.+.++..+.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 567899999999999999999998654
No 484
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.99 E-value=0.027 Score=59.90 Aligned_cols=34 Identities=24% Similarity=0.234 Sum_probs=28.5
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 173 ILKDVSGIIRPGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 173 iL~dVS~~I~~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
+++.+ ..+-+|+.++|+||||+|||||++.|++.
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhh
Confidence 55555 56668999999999999999999999874
No 485
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.99 E-value=0.021 Score=52.86 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.+.+.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5789999999999999998853
No 486
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.98 E-value=0.026 Score=54.55 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhCCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.++|+||+||||||+.+.|+-.+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998643
No 487
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=93.96 E-value=0.022 Score=60.30 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
.++|+|++|+|||||++.|+|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999994
No 488
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.96 E-value=0.028 Score=56.36 Aligned_cols=26 Identities=42% Similarity=0.588 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+..-++|.||+|+|||||.++|+...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 55678999999999999999998753
No 489
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.96 E-value=0.025 Score=55.01 Aligned_cols=25 Identities=44% Similarity=0.500 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
+..-++|.||+|+|||||.++|+..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3346889999999999999999874
No 490
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.93 E-value=0.022 Score=52.69 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.+.+.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 491
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.86 E-value=0.025 Score=53.01 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhCC
Q 044321 186 MTLLLGPPGSVKTTLLLALAGK 207 (521)
Q Consensus 186 ~~~LlGpnGSGKSTLLk~LaG~ 207 (521)
-++|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999998874
No 492
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.85 E-value=0.028 Score=55.09 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+.-+.|.||+|+|||||+++|+..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3467899999999999999999865
No 493
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.81 E-value=0.033 Score=56.25 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
..+++|+||+|||||||...|+-.+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999998754
No 494
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=93.73 E-value=1.7 Score=46.63 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHhC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAG 206 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG 206 (521)
..+++|+|+.|.|||||.+.++.
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 495
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.60 E-value=0.037 Score=55.46 Aligned_cols=25 Identities=36% Similarity=0.360 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+.-+.|.||+|+|||+|+.+|+..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 5788999999999999999998743
No 496
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.58 E-value=0.033 Score=56.77 Aligned_cols=26 Identities=46% Similarity=0.478 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 183 PGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 183 ~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
++.-++|.||||+||||+.++|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34568899999999999999999865
No 497
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.56 E-value=0.037 Score=56.52 Aligned_cols=27 Identities=37% Similarity=0.573 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 182 RPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 182 ~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
.+..-++|.||+|+|||||+++|+..+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345678999999999999999999754
No 498
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.50 E-value=0.028 Score=53.46 Aligned_cols=28 Identities=11% Similarity=0.167 Sum_probs=22.8
Q ss_pred EeCCcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 181 IRPGRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 181 I~~Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
+++...++|.||+|+||||+..+|+..+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444578999999999999999998743
No 499
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.48 E-value=0.032 Score=56.97 Aligned_cols=24 Identities=33% Similarity=0.344 Sum_probs=21.3
Q ss_pred cEEEEEcCCCChHHHHHHHHhCCC
Q 044321 185 RMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 185 e~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-+++|+|++|+|||||++.|++.+
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999999998754
No 500
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.42 E-value=0.038 Score=57.75 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhCCC
Q 044321 184 GRMTLLLGPPGSVKTTLLLALAGKL 208 (521)
Q Consensus 184 Ge~~~LlGpnGSGKSTLLk~LaG~l 208 (521)
-.+++|+||+|||||||...|+-.+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3478999999999999999998643
Done!