BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044323
         (93 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WWQ|A Chain A, Solution Structure Of Mouse Er
          Length = 111

 Score = 92.0 bits (227), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 61/93 (65%)

Query: 1   MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
           +Q +     RT+ DY S+++ M+G+C +YE  LK +NP    ITYD++ L++FID LAD+
Sbjct: 15  VQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADL 74

Query: 61  SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH 93
           S LVY    Q Y PY++ WIK++ +  L++ A 
Sbjct: 75  SCLVYRADTQTYQPYNKDWIKEKIYVLLRRQAQ 107


>pdb|1W9G|A Chain A, Structure Of Erh (Enhencer Of Rudimentary Gene)
 pdb|1W9G|B Chain B, Structure Of Erh (Enhencer Of Rudimentary Gene)
 pdb|2NML|A Chain A, Crystal Structure Of Hef2ERH AT 1.55 A RESOLUTION
          Length = 104

 Score = 92.0 bits (227), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 61/93 (65%)

Query: 1   MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
           +Q +     RT+ DY S+++ M+G+C +YE  LK +NP    ITYD++ L++FID LAD+
Sbjct: 8   VQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADL 67

Query: 61  SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH 93
           S LVY    Q Y PY++ WIK++ +  L++ A 
Sbjct: 68  SCLVYRADTQTYQPYNKDWIKEKIYVLLRRQAQ 100


>pdb|1WZ7|A Chain A, Crystal Structure Of Enhancer Of Rudimentary Homologue
           (Erh)
 pdb|1WZ7|B Chain B, Crystal Structure Of Enhancer Of Rudimentary Homologue
           (Erh)
 pdb|1WZ7|C Chain C, Crystal Structure Of Enhancer Of Rudimentary Homologue
           (Erh)
          Length = 111

 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 58/93 (62%)

Query: 1   MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
           +Q +     RT+ DY S+++  +G+C  YE  LK  NP    ITYD++ L++FID LAD+
Sbjct: 15  VQPTKRPEGRTYADYESVNECXEGVCKXYEEHLKRXNPNSPSITYDISQLFDFIDDLADL 74

Query: 61  SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH 93
           S LVY    Q Y PY++ WIK++ +  L++ A 
Sbjct: 75  SCLVYRADTQTYQPYNKDWIKEKIYVLLRRQAQ 107


>pdb|3UJH|A Chain A, Crystal Structure Of Substrate-Bound Glucose-6-Phosphate
          Isomerase From Toxoplasma Gondii
 pdb|3UJH|B Chain B, Crystal Structure Of Substrate-Bound Glucose-6-Phosphate
          Isomerase From Toxoplasma Gondii
          Length = 567

 Score = 27.7 bits (60), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 13/22 (59%)

Query: 72 YLPYDRQWIKQRTFQHLKKLAH 93
          YL + RQ I   T QHL  LAH
Sbjct: 53 YLDFSRQKITLETLQHLVNLAH 74


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,727,964
Number of Sequences: 62578
Number of extensions: 93089
Number of successful extensions: 210
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 206
Number of HSP's gapped (non-prelim): 4
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)