BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044323
(93 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96319|ERH_ARATH Enhancer of rudimentary homolog OS=Arabidopsis thaliana
GN=At5g10810 PE=3 SV=1
Length = 109
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 75/93 (80%), Positives = 87/93 (93%)
Query: 1 MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
+Q SPSRATRTFMDY SI QAMDGICGLYERKLKE+NP++R+I+YD+ADLYNFIDGLAD+
Sbjct: 14 LQNSPSRATRTFMDYDSIGQAMDGICGLYERKLKEINPSLRNISYDIADLYNFIDGLADL 73
Query: 61 SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH 93
SALVYDHSI AYLPYDRQWIKQ+ F HLK++A+
Sbjct: 74 SALVYDHSISAYLPYDRQWIKQKAFHHLKRIAN 106
>sp|Q86A92|ERH_DICDI Enhancer of rudimentary homolog OS=Dictyostelium discoideum GN=erh
PE=3 SV=1
Length = 100
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 71/93 (76%)
Query: 1 MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
+QT+ +++RTFMDY S++QA++GIC +YE++LK+ P ++ITYD++ L+ FID LAD+
Sbjct: 8 LQTTMGKSSRTFMDYESVNQAIEGICNMYEQRLKQERPNQKNITYDISQLFKFIDSLADL 67
Query: 61 SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH 93
S LVY I AY PY+++WIK + HL+KLA
Sbjct: 68 SCLVYTSHINAYTPYNKEWIKTKIINHLQKLAQ 100
>sp|Q93104|ERH_AEDAE Enhancer of rudimentary homolog OS=Aedes aegypti PE=3 SV=1
Length = 103
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 62/92 (67%)
Query: 1 MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
+Q + TRT+ DY S+++ M+G+C +YE LK NP ITYD++ L++F+D LAD+
Sbjct: 8 VQPGRNPETRTYSDYESVNECMEGVCKIYEEHLKRRNPNTPTITYDISQLFDFVDQLADL 67
Query: 61 SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLA 92
S LVY S Y PY+++WIK++ + L++ A
Sbjct: 68 SCLVYQKSTNTYAPYNKEWIKEKIYVLLRQAA 99
>sp|Q94554|ER_DROVI Protein enhancer of rudimentary OS=Drosophila virilis GN=e(r)
PE=3 SV=1
Length = 104
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 59/92 (64%)
Query: 1 MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
+Q TRT+ DY S+++ M+G+C +YE LK NP ITYD++ L++FID L D+
Sbjct: 8 VQPGARPETRTYCDYESVNECMEGVCKIYEEHLKRRNPNTPTITYDISQLFDFIDTLIDI 67
Query: 61 SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLA 92
S LVY S Y PY++ WIK++ + L++ A
Sbjct: 68 SCLVYQKSTNTYAPYNKDWIKEKIYVLLRQAA 99
>sp|P84089|ERH_MOUSE Enhancer of rudimentary homolog OS=Mus musculus GN=Erh PE=1 SV=1
Length = 104
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 61/93 (65%)
Query: 1 MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
+Q + RT+ DY S+++ M+G+C +YE LK +NP ITYD++ L++FID LAD+
Sbjct: 8 VQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADL 67
Query: 61 SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH 93
S LVY Q Y PY++ WIK++ + L++ A
Sbjct: 68 SCLVYRADTQTYQPYNKDWIKEKIYVLLRRQAQ 100
>sp|P84090|ERH_HUMAN Enhancer of rudimentary homolog OS=Homo sapiens GN=ERH PE=1 SV=1
Length = 104
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 61/93 (65%)
Query: 1 MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
+Q + RT+ DY S+++ M+G+C +YE LK +NP ITYD++ L++FID LAD+
Sbjct: 8 VQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADL 67
Query: 61 SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH 93
S LVY Q Y PY++ WIK++ + L++ A
Sbjct: 68 SCLVYRADTQTYQPYNKDWIKEKIYVLLRRQAQ 100
>sp|Q3SZC0|ERH_BOVIN Enhancer of rudimentary homolog OS=Bos taurus GN=ERH PE=2 SV=1
Length = 104
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 61/93 (65%)
Query: 1 MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
+Q + RT+ DY S+++ M+G+C +YE LK +NP ITYD++ L++FID LAD+
Sbjct: 8 VQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADL 67
Query: 61 SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH 93
S LVY Q Y PY++ WIK++ + L++ A
Sbjct: 68 SCLVYRADTQTYQPYNKDWIKEKIYVLLRRQAQ 100
>sp|Q98874|ERH_DANRE Enhancer of rudimentary homolog OS=Danio rerio GN=erh PE=3 SV=1
Length = 104
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 61/93 (65%)
Query: 1 MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
+Q + RT+ DY S+++ M+G+C +YE LK +NP ITYD++ L++F+D LAD+
Sbjct: 8 VQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFVDDLADL 67
Query: 61 SALVYDHSIQAYLPYDRQWIKQRTFQHLKKLAH 93
S LVY Q Y PY++ WIK++ + L++ A
Sbjct: 68 SCLVYRADTQTYQPYNKDWIKEKIYVLLRRQAQ 100
>sp|Q24337|ER_DROME Protein enhancer of rudimentary OS=Drosophila melanogaster
GN=e(r) PE=1 SV=1
Length = 104
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 57/84 (67%)
Query: 9 TRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHS 68
TRT+ DY S+++ M+G+C +YE LK NP ITYD++ L++FID + D+S +VY S
Sbjct: 16 TRTYCDYESVNECMEGVCKIYEEHLKRRNPNTPTITYDISQLFDFIDTMVDISCMVYQKS 75
Query: 69 IQAYLPYDRQWIKQRTFQHLKKLA 92
Y PY++ WIK++ + L++ A
Sbjct: 76 TNTYAPYNKDWIKEKIYVLLRQAA 99
>sp|P69100|ERH_TAESO Enhancer of rudimentary homolog OS=Taenia solium GN=ERH PE=3 SV=1
Length = 102
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 9 TRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHS 68
+R + DY +++Q ++G+C +YE +LK+ NP ITYD++ L+ FID LAD+S L + +
Sbjct: 17 SRVWADYETLNQCLEGVCKIYEEQLKQQNPTAPTITYDISQLFKFIDQLADLSCLEFHPA 76
Query: 69 IQAYLPYDRQWIKQRTFQHLKKLA 92
Y+P+ + WIK+ + L+ A
Sbjct: 77 TGTYVPHTKDWIKENIYALLRNQA 100
>sp|P69099|ERH_ECHMU Enhancer of rudimentary homolog OS=Echinococcus multilocularis
GN=ERH PE=3 SV=1
Length = 102
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 9 TRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHS 68
+R + DY +++Q ++G+C +YE +LK+ NP ITYD++ L+ FID LAD+S L + +
Sbjct: 17 SRVWADYETLNQCLEGVCKIYEEQLKQQNPTAPTITYDISQLFKFIDQLADLSCLEFHPA 76
Query: 69 IQAYLPYDRQWIKQRTFQHLKKLA 92
Y+P+ + WIK+ + L+ A
Sbjct: 77 TGTYVPHTKDWIKENIYALLRNQA 100
>sp|Q22640|ERH_CAEEL Enhancer of rudimentary homolog OS=Caenorhabditis elegans
GN=T21C9.4 PE=1 SV=1
Length = 103
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 60/86 (69%)
Query: 1 MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60
+Q + + +R++ DY + ++ ++GIC +YE LK+ PA +ITYD++ L+ FID L D+
Sbjct: 8 LQPTDNIESRSWSDYENTTECLEGICRVYEEYLKKKVPAQNEITYDISHLFEFIDDLKDL 67
Query: 61 SALVYDHSIQAYLPYDRQWIKQRTFQ 86
S LV D++ Y+P+++Q++K+ ++
Sbjct: 68 SMLVLDNTTYTYVPHNKQYVKESIYK 93
>sp|G2TRN4|ERH_SCHPO Enhancer of rudimentary homolog OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=new10 PE=2 SV=1
Length = 104
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 1 MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDI-TYDVADLYNFIDGLAD 59
+Q TR + D+ S+ A++ I G+Y+ N A+ + + DV+ +NF D + D
Sbjct: 14 IQQGSDPKTRIWSDHCSLRSAIEYIVGVYQ-----TNQAVSEKESIDVSRFFNFFDEIYD 68
Query: 60 MSALVYDHSIQAYLPYDRQWIKQRTFQHL 88
LVYD +AY+P+++QW+ ++L
Sbjct: 69 CVPLVYDRHFRAYIPHEKQWLLHHAQEYL 97
>sp|B6ENH6|MUTS_ALISL DNA mismatch repair protein MutS OS=Aliivibrio salmonicida (strain
LFI1238) GN=mutS PE=3 SV=1
Length = 855
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 12 FMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYN 52
++ S++Q +D IC L ER +KE P + +AD YN
Sbjct: 391 LLELASLAQPIDSICELLERAVKENPPVVIRDGGVLADGYN 431
>sp|Q15QR4|LEU1_PSEA6 2-isopropylmalate synthase OS=Pseudoalteromonas atlantica (strain
T6c / ATCC BAA-1087) GN=leuA PE=3 SV=1
Length = 519
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 30 ERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQ 78
+ +L+EL D YD+ LY LAD V+D+ ++A L +D+Q
Sbjct: 338 KHRLEELGYKAED--YDLDTLYASFVKLADKKGQVFDYDLEALLFFDKQ 384
>sp|A1SRG8|LEU1_PSYIN 2-isopropylmalate synthase OS=Psychromonas ingrahamii (strain 37)
GN=leuA PE=3 SV=1
Length = 519
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 30 ERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDR 77
+ +++EL RD YD+ LY LAD V+D+ ++A + +++
Sbjct: 338 QHRMQEL--GYRDTDYDLEQLYASFVELADKKGQVFDYDLEALMFFNK 383
>sp|B0TM27|COAA_SHEHH Pantothenate kinase OS=Shewanella halifaxensis (strain HAW-EB4)
GN=coaA PE=3 SV=1
Length = 316
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 44 TYDVADLYNFID----GLADMSALVYDHSIQAYLPYDRQWIKQ 82
+YD+ L FI G A +S+ +Y H +P ++QWI+Q
Sbjct: 150 SYDMKALVEFISAIKAGEATVSSPIYSHITYDRIPDEQQWIRQ 192
>sp|Q8R977|SPEE2_THETN Spermidine synthase 2 OS=Thermoanaerobacter tengcongensis (strain
DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=speE2 PE=3
SV=1
Length = 297
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 24 GICGLYERKLKELNPAI---RDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWI 80
G C +YE LKE+ P + D +DL+ F L + L H I L Y ++
Sbjct: 222 GFCHIYE-ILKEVFPFVIPYADYIPSFSDLWTFFVALKGIKDLTPRHEIPRDLKYYDEYT 280
Query: 81 KQRTFQHLKKL 91
+R F K L
Sbjct: 281 NERIFTLAKPL 291
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,581,436
Number of Sequences: 539616
Number of extensions: 1140401
Number of successful extensions: 2707
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2694
Number of HSP's gapped (non-prelim): 23
length of query: 93
length of database: 191,569,459
effective HSP length: 63
effective length of query: 30
effective length of database: 157,573,651
effective search space: 4727209530
effective search space used: 4727209530
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)