Query 044323
Match_columns 93
No_of_seqs 95 out of 97
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 13:31:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044323.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044323hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01133 ER: Enhancer of rudim 100.0 2.4E-60 5.3E-65 327.1 7.3 93 1-93 8-100 (102)
2 KOG1766 Enhancer of rudimentar 100.0 9.9E-59 2.2E-63 318.1 8.1 93 1-93 8-100 (104)
3 PF12646 DUF3783: Domain of un 76.4 2 4.3E-05 26.2 1.7 41 48-90 12-52 (58)
4 PF12872 OST-HTH: OST-HTH/LOTU 75.1 3 6.6E-05 25.2 2.3 44 29-72 29-72 (74)
5 COG2879 Uncharacterized small 72.8 4 8.6E-05 26.5 2.5 24 28-53 27-50 (65)
6 COG5225 RRS1 Uncharacterized p 64.3 3.9 8.4E-05 30.6 1.3 22 61-82 109-140 (172)
7 PF14575 EphA2_TM: Ephrin type 57.3 6.4 0.00014 25.3 1.3 19 6-24 47-68 (75)
8 PF07886 BA14K: BA14K-like pro 52.1 7.2 0.00016 21.7 0.7 13 65-77 13-25 (31)
9 PF03296 Pox_polyA_pol: Poxvir 52.0 14 0.00031 27.3 2.5 22 17-38 30-51 (149)
10 smart00773 WGR Proposed nuclei 51.1 19 0.00042 22.7 2.7 31 8-39 49-79 (84)
11 PHA02086 hypothetical protein 46.8 9.1 0.0002 25.8 0.7 19 15-33 4-22 (88)
12 PF05406 WGR: WGR domain; Int 45.2 23 0.0005 22.3 2.4 26 14-39 51-76 (81)
13 PF12596 Tnp_P_element_C: 87kD 45.1 28 0.00061 24.3 3.0 28 18-45 75-102 (106)
14 PF15374 CCDC71L: Coiled-coil 44.3 24 0.00053 29.6 3.0 35 26-60 17-51 (376)
15 PF06419 COG6: Conserved oligo 42.2 35 0.00076 29.5 3.7 40 17-56 304-345 (618)
16 KOG2022 Nuclear transport rece 41.7 21 0.00046 33.2 2.4 49 18-69 717-766 (982)
17 KOG1498 26S proteasome regulat 40.8 10 0.00022 32.3 0.3 54 8-61 41-107 (439)
18 PF04876 Tenui_NCP: Tenuivirus 40.5 50 0.0011 24.9 3.9 70 13-89 68-138 (175)
19 cd07895 Adenylation_mRNA_cappi 38.8 18 0.00039 26.4 1.3 36 46-81 174-212 (215)
20 COG3091 SprT Zn-dependent meta 34.0 18 0.0004 26.9 0.7 21 59-79 68-88 (156)
21 PF07179 SseB: SseB protein N- 33.2 1.2E+02 0.0026 19.3 4.4 41 40-81 82-122 (124)
22 PF09904 HTH_43: Winged helix- 33.0 44 0.00096 22.8 2.4 17 72-88 71-87 (90)
23 KOG2090 Metalloendopeptidase f 32.7 51 0.0011 29.7 3.3 32 2-33 357-388 (704)
24 PRK04358 hypothetical protein; 32.6 25 0.00054 27.4 1.2 27 6-32 15-41 (217)
25 KOG4426 Arginyl-tRNA synthetas 31.1 70 0.0015 28.3 3.8 51 5-55 184-270 (656)
26 PF04852 DUF640: Protein of un 31.0 1.3E+02 0.0027 22.0 4.6 56 3-61 7-65 (132)
27 smart00386 HAT HAT (Half-A-TPR 30.8 58 0.0013 15.5 2.1 20 22-42 3-22 (33)
28 cd07996 WGR_MMR_like WGR domai 30.1 75 0.0016 19.3 2.9 22 14-35 48-69 (74)
29 PF03542 Tuberin: Tuberin; In 28.8 49 0.0011 27.1 2.4 45 13-57 6-72 (356)
30 smart00455 RBD Raf-like Ras-bi 28.5 50 0.0011 20.7 1.9 14 16-29 20-33 (70)
31 KOG0671 LAMMER dual specificit 28.4 93 0.002 26.5 4.0 58 33-91 139-205 (415)
32 PF02196 RBD: Raf-like Ras-bin 26.0 58 0.0013 20.4 1.9 14 16-29 21-34 (71)
33 PF15467 SGIII: Secretogranin- 25.7 59 0.0013 27.7 2.4 38 21-59 393-430 (453)
34 KOG2290 Rhomboid family protei 25.7 14 0.0003 32.5 -1.3 33 6-42 406-449 (652)
35 PF03081 Exo70: Exo70 exocyst 25.6 1.7E+02 0.0037 22.7 4.8 38 20-57 330-371 (371)
36 PF07315 DUF1462: Protein of u 25.2 45 0.00098 23.0 1.4 16 30-45 26-42 (93)
37 PF10686 DUF2493: Protein of u 24.6 42 0.00092 21.2 1.1 20 8-27 10-29 (71)
38 PRK05911 RNA polymerase sigma 24.5 40 0.00086 25.5 1.1 67 20-91 23-98 (257)
39 PF12645 HTH_16: Helix-turn-he 24.3 1E+02 0.0022 19.1 2.8 17 19-35 12-28 (65)
40 PHA02996 poly(A) polymerase la 22.6 74 0.0016 27.4 2.4 23 17-39 147-169 (467)
41 PF03709 OKR_DC_1_N: Orn/Lys/A 22.6 99 0.0021 20.6 2.7 27 42-68 21-47 (115)
42 cd03133 GATase1_ES1 Type 1 glu 22.3 1.2E+02 0.0026 22.9 3.3 28 7-34 184-211 (213)
43 PF11112 PyocinActivator: Pyoc 21.0 1.6E+02 0.0034 19.1 3.3 13 45-57 59-71 (76)
44 PF05576 Peptidase_S37: PS-10 20.9 73 0.0016 27.4 2.1 32 44-76 263-294 (448)
45 PRK13916 plasmid segregation p 20.6 59 0.0013 22.4 1.2 17 46-62 16-32 (97)
46 PRK09956 hypothetical protein; 20.6 3E+02 0.0065 21.8 5.4 27 11-37 85-111 (308)
47 PF01372 Melittin: Melittin; 20.3 56 0.0012 17.6 0.8 7 77-83 17-23 (26)
48 TIGR03875 RNA_lig_partner RNA 20.1 1.1E+02 0.0023 23.8 2.6 64 6-72 11-84 (206)
No 1
>PF01133 ER: Enhancer of rudimentary; InterPro: IPR000781 The Drosophila protein 'enhancer of rudimentary' (gene (e(r)) is a small protein of 104 residues whose function is not yet clear. From an evolutionary point of view, it is highly conserved [] and has been found to exist in probably all multicellular eukaryotic organisms. It has been proposed that this protein plays a role in the cell cycle.; GO: 0007049 cell cycle; PDB: 1W9G_A 2NML_A 1WWQ_A 1WZ7_B.
Probab=100.00 E-value=2.4e-60 Score=327.09 Aligned_cols=93 Identities=52% Similarity=0.950 Sum_probs=84.8
Q ss_pred CCCCCCCCCccccccCCHHHHHHHHHHHHHHHHHhhCCCCCccceeHHHHHHhhhhhcCceeEEEeCCCCcccCCChhHH
Q 044323 1 MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWI 80 (93)
Q Consensus 1 vQ~~~~~~sRTy~DyeSv~~~megIC~~yE~~LK~~nP~~~~ItYdis~Lf~fiD~l~Dls~LV~~~~~~~Y~P~~K~WI 80 (93)
|||+++++||||+|||||++||||||++||++||++||++++|||||+|||+|||+|+|||||||++++++|+||||+||
T Consensus 8 vQp~~~~~sRTy~DyeSv~~cmegIC~~YE~~LK~~nP~~~~ItYdIs~Lf~fID~l~DlscLV~~~~~~~Y~P~nK~WI 87 (102)
T PF01133_consen 8 VQPSQRPESRTYSDYESVNECMEGICKIYEEHLKRKNPNSPSITYDISDLFDFIDSLADLSCLVYDKSTNAYVPHNKQWI 87 (102)
T ss_dssp EESSSSCCC-EEEEESSHHHHHHHHHHHHHHHHHHHSTT-SS----HHHHHHHHHHSSEEEEEEEETTTTEEEEE-HHHH
T ss_pred EecCCCCCcceeechhhHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHhhhhhcceEEEeCCCCccCCCCHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhC
Q 044323 81 KQRTFQHLKKLAH 93 (93)
Q Consensus 81 Keki~~~L~~~a~ 93 (93)
|||||++||++|+
T Consensus 88 Keki~~~L~~~a~ 100 (102)
T PF01133_consen 88 KEKIFQHLRKQAG 100 (102)
T ss_dssp HHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999984
No 2
>KOG1766 consensus Enhancer of rudimentary [General function prediction only]
Probab=100.00 E-value=9.9e-59 Score=318.07 Aligned_cols=93 Identities=43% Similarity=0.897 Sum_probs=91.8
Q ss_pred CCCCCCCCCccccccCCHHHHHHHHHHHHHHHHHhhCCCCCccceeHHHHHHhhhhhcCceeEEEeCCCCcccCCChhHH
Q 044323 1 MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWI 80 (93)
Q Consensus 1 vQ~~~~~~sRTy~DyeSv~~~megIC~~yE~~LK~~nP~~~~ItYdis~Lf~fiD~l~Dls~LV~~~~~~~Y~P~~K~WI 80 (93)
|||+++++||||+|||||++||||||+|||+|||++||+.++|||||||||+|||+|+|||||||++++++|+||||+||
T Consensus 8 lQ~s~r~esRT~~DYesv~e~megiCk~yEe~Lkk~nPs~~~ITYDIsqlfeFiD~L~DlS~lVy~~~t~tY~pynk~wI 87 (104)
T KOG1766|consen 8 LQPSPRPESRTWGDYESVTECMEGICKMYEEHLKKKNPSAPPITYDISQLFEFIDDLADLSMLVYNRETGTYIPYNKDWI 87 (104)
T ss_pred ecCCCCcccccccchHhHHHHHHHHHHHHHHHHHhcCCCCCCcceeHHHHHHHHHHHhhhhhhheecccccccCccHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhC
Q 044323 81 KQRTFQHLKKLAH 93 (93)
Q Consensus 81 Keki~~~L~~~a~ 93 (93)
|||||++||++|+
T Consensus 88 Kekiy~lmr~~a~ 100 (104)
T KOG1766|consen 88 KEKIYVLMRGRAQ 100 (104)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999884
No 3
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=76.45 E-value=2 Score=26.25 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=33.9
Q ss_pred HHHHHhhhhhcCceeEEEeCCCCcccCCChhHHHHHHHHHHHh
Q 044323 48 ADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIKQRTFQHLKK 90 (93)
Q Consensus 48 s~Lf~fiD~l~Dls~LV~~~~~~~Y~P~~K~WIKeki~~~L~~ 90 (93)
.+|..||+.+..... ..+-...=+|+|+.|--..++..|++
T Consensus 12 ~el~~~l~~~r~~~~--~~~~kAvlT~tN~~Wt~~~L~~El~~ 52 (58)
T PF12646_consen 12 EELDKFLDALRKAGI--PIPLKAVLTPTNINWTLKDLLEELKE 52 (58)
T ss_pred HHHHHHHHHHHHcCC--CcceEEEECCCcccCcHHHHHHHHHH
Confidence 578899999988855 55556677899999999999998876
No 4
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=75.05 E-value=3 Score=25.22 Aligned_cols=44 Identities=14% Similarity=0.228 Sum_probs=31.4
Q ss_pred HHHHHHhhCCCCCccceeHHHHHHhhhhhcCceeEEEeCCCCcc
Q 044323 29 YERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAY 72 (93)
Q Consensus 29 yE~~LK~~nP~~~~ItYdis~Lf~fiD~l~Dls~LV~~~~~~~Y 72 (93)
..+.+++.+|....=+|.-+.|-+|+.++.|+.-+.-+++.+.+
T Consensus 29 l~~~~~~~~~~f~~~~yG~~~l~~ll~~~~~~~~i~~~~~g~~~ 72 (74)
T PF12872_consen 29 LGQEYKKKYPDFDPRDYGFSSLSELLESLPDVVEIEERQHGGQV 72 (74)
T ss_dssp HHHHHHHHHTT--TCCTTSSSHHHHHHT-TTTEEEEEEECCCC-
T ss_pred HHHHHHHHCCCCCccccCCCcHHHHHHhCCCeEEEeeeCCCCcC
Confidence 34455666688888999999999999999999888766655543
No 5
>COG2879 Uncharacterized small protein [Function unknown]
Probab=72.76 E-value=4 Score=26.47 Aligned_cols=24 Identities=17% Similarity=0.450 Sum_probs=19.5
Q ss_pred HHHHHHHhhCCCCCccceeHHHHHHh
Q 044323 28 LYERKLKELNPAIRDITYDVADLYNF 53 (93)
Q Consensus 28 ~yE~~LK~~nP~~~~ItYdis~Lf~f 53 (93)
-|=+|.|.++|+.+..|| .++|.+
T Consensus 27 nYVehmr~~hPd~p~mT~--~EFfre 50 (65)
T COG2879 27 NYVEHMRKKHPDKPPMTY--EEFFRE 50 (65)
T ss_pred HHHHHHHHhCcCCCcccH--HHHHHH
Confidence 378999999999999999 455543
No 6
>COG5225 RRS1 Uncharacterized protein involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=64.30 E-value=3.9 Score=30.63 Aligned_cols=22 Identities=32% Similarity=0.744 Sum_probs=18.6
Q ss_pred eeEEEeCCCCcccCC----------ChhHHHH
Q 044323 61 SALVYDHSIQAYLPY----------DRQWIKQ 82 (93)
Q Consensus 61 s~LV~~~~~~~Y~P~----------~K~WIKe 82 (93)
..||||..++.|+|. .++||+|
T Consensus 109 g~lvyDEasGEwvPkwGykgknk~l~~qwlve 140 (172)
T COG5225 109 GPLVYDEASGEWVPKWGYKGKNKRLLKQWLVE 140 (172)
T ss_pred CCceeeccccccccccCccccchHHHHHHHHh
Confidence 379999999999995 4689886
No 7
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=57.30 E-value=6.4 Score=25.32 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=8.6
Q ss_pred CCCCccccc---cCCHHHHHHH
Q 044323 6 SRATRTFMD---YGSISQAMDG 24 (93)
Q Consensus 6 ~~~sRTy~D---yeSv~~~meg 24 (93)
-+..|||.| ||..++|+-.
T Consensus 47 ~~~~ktYIDP~TYEDP~qAV~e 68 (75)
T PF14575_consen 47 FPGVKTYIDPHTYEDPNQAVRE 68 (75)
T ss_dssp ---------GGGSSSHHHHHHH
T ss_pred CCCceeecCcccccCHHHHHHH
Confidence 466799999 9999999853
No 8
>PF07886 BA14K: BA14K-like protein; InterPro: IPR012413 The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus (Q44701 from SWISSPROT) and by Brucella suis (Q8FVU0 from SWISSPROT). BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process [].
Probab=52.07 E-value=7.2 Score=21.67 Aligned_cols=13 Identities=46% Similarity=0.871 Sum_probs=11.2
Q ss_pred EeCCCCcccCCCh
Q 044323 65 YDHSIQAYLPYDR 77 (93)
Q Consensus 65 ~~~~~~~Y~P~~K 77 (93)
|++.+++|.|++-
T Consensus 13 y~p~~~Ty~~~~G 25 (31)
T PF07886_consen 13 YDPRDNTYQPYDG 25 (31)
T ss_pred CCCCCCcEeCCCC
Confidence 7899999999873
No 9
>PF03296 Pox_polyA_pol: Poxvirus poly(A) polymerase nucleotidyltransferase domain; InterPro: IPR024231 Poly(A) polymerase (2.7.7.19 from EC) catalyses template-independent extension of the 3'-end of a DNA or RNA strand by one nucleotide at a time. The Poxvirus enzyme creates the 3'(poly)A tail of mRNAs, and is a heterodimer of a catalytic and a regulatory subunit. This entry represents the nucleotidyltransferase domain of the catalytic subunit [].; PDB: 3ERC_C 3ER8_D 3OWG_A 2GA9_D 2GAF_D 3ER9_B.
Probab=51.97 E-value=14 Score=27.30 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHHHHHHhhCC
Q 044323 17 SISQAMDGICGLYERKLKELNP 38 (93)
Q Consensus 17 Sv~~~megIC~~yE~~LK~~nP 38 (93)
-|++-++.||++-||.||++|-
T Consensus 30 ~vS~lV~~V~klmeEyLrrhNk 51 (149)
T PF03296_consen 30 NVSDLVENVNKLMEEYLRRHNK 51 (149)
T ss_dssp ---THHHHHHHHHHHHHHH-TT
T ss_pred cCcHHHHHHHHHHHHHHHhhCC
Confidence 4666799999999999999765
No 10
>smart00773 WGR Proposed nucleic acid binding domain. This domain is named after its most conserved central motif. It is found in a variety of polyA polymerases as well as in molybdate metabolism regulators (e.g. in E.coli) and other proteins of unknown function. The domain is found in isolation in some proteins and is between 70 and 80 residues in length. It is proposed that it may be a nucleic acid binding domain.
Probab=51.14 E-value=19 Score=22.73 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=24.8
Q ss_pred CCccccccCCHHHHHHHHHHHHHHHHHhhCCC
Q 044323 8 ATRTFMDYGSISQAMDGICGLYERKLKELNPA 39 (93)
Q Consensus 8 ~sRTy~DyeSv~~~megIC~~yE~~LK~~nP~ 39 (93)
.+++ -+|.|..+|+...+++|.+++++-..+
T Consensus 49 ~~~~-~~~~s~~~A~~~f~k~~~~Kt~~gy~~ 79 (84)
T smart00773 49 QTKL-ETFDSLEDAIKEFEKLFKEKTKNGYEE 79 (84)
T ss_pred ceee-EcCCCHHHHHHHHHHHHHHHhcCCCcc
Confidence 3444 368899999999999999999876543
No 11
>PHA02086 hypothetical protein
Probab=46.82 E-value=9.1 Score=25.84 Aligned_cols=19 Identities=21% Similarity=0.614 Sum_probs=15.7
Q ss_pred cCCHHHHHHHHHHHHHHHH
Q 044323 15 YGSISQAMDGICGLYERKL 33 (93)
Q Consensus 15 yeSv~~~megIC~~yE~~L 33 (93)
||-++++++.||++=-+++
T Consensus 4 yee~~~~l~ricrinirfm 22 (88)
T PHA02086 4 YEELNNALERVCRINIRFM 22 (88)
T ss_pred HHHHHHHHHHHHhhhheec
Confidence 7889999999999965443
No 12
>PF05406 WGR: WGR domain; InterPro: IPR008893 This domain is named after the most conserved central motif of the domain. It is found in a variety of polyA polymerases as well as the Escherichia coli molybdate metabolism regulator P33345 from SWISSPROT and other proteins of unknown function.The domain is found in isolation in proteins such as Q9JN21 from SWISSPROT and is between 70 and 80 residues in length. ; PDB: 2EOC_A 2RA8_A 4DQY_C 2CR9_A.
Probab=45.24 E-value=23 Score=22.26 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=22.3
Q ss_pred ccCCHHHHHHHHHHHHHHHHHhhCCC
Q 044323 14 DYGSISQAMDGICGLYERKLKELNPA 39 (93)
Q Consensus 14 DyeSv~~~megIC~~yE~~LK~~nP~ 39 (93)
.|.|..+|+...+++|.+++++-.-.
T Consensus 51 ~f~s~~eA~~~f~~~~~~K~~~gy~~ 76 (81)
T PF05406_consen 51 PFDSEEEAIKEFEKLFKEKTGKGYEE 76 (81)
T ss_dssp EESSHHHHHHHHHHHHHHHHSSTSCC
T ss_pred eCCCHHHHHHHHHHHHHHHHcCCCcc
Confidence 77899999999999999998875443
No 13
>PF12596 Tnp_P_element_C: 87kDa Transposase; InterPro: IPR022242 This domain family is found in eukaryotes, and is typically between 78 and 110 amino acids in length. The family is found in association with PF05485 from PFAM. There are two completely conserved residues (D and G) that may be functionally important. This family is an 87kDa transposase protein which catalyses both the precise and imprecise excision of a nonautonomous P transposable element.
Probab=45.07 E-value=28 Score=24.28 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCccce
Q 044323 18 ISQAMDGICGLYERKLKELNPAIRDITY 45 (93)
Q Consensus 18 v~~~megIC~~yE~~LK~~nP~~~~ItY 45 (93)
-.+||+.|++.=-+++|.++|++...|.
T Consensus 75 e~d~l~YiaGyVa~k~~~k~p~L~~~t~ 102 (106)
T PF12596_consen 75 EEDGLEYIAGYVAKKFRNKYPNLGDYTC 102 (106)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhheee
Confidence 4689999999999999999998887765
No 14
>PF15374 CCDC71L: Coiled-coil domain-containing protein 71L
Probab=44.25 E-value=24 Score=29.57 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhCCCCCccceeHHHHHHhhhhhcCc
Q 044323 26 CGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60 (93)
Q Consensus 26 C~~yE~~LK~~nP~~~~ItYdis~Lf~fiD~l~Dl 60 (93)
-+.+||.|+--||.....+=.=.||..||-+|.|=
T Consensus 17 ~kaleeAl~vF~PmS~dl~~te~qLv~Flq~Lr~e 51 (376)
T PF15374_consen 17 KKALEEALRVFNPMSKDLSDTEAQLVAFLQGLRHE 51 (376)
T ss_pred HHHHHHHHHHhCccccccchhHHHHHHHHHHHhhc
Confidence 36789999999999999999999999999999874
No 15
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=42.19 E-value=35 Score=29.48 Aligned_cols=40 Identities=15% Similarity=0.398 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHHHHHHhh--CCCCCccceeHHHHHHhhhh
Q 044323 17 SISQAMDGICGLYERKLKEL--NPAIRDITYDVADLYNFIDG 56 (93)
Q Consensus 17 Sv~~~megIC~~yE~~LK~~--nP~~~~ItYdis~Lf~fiD~ 56 (93)
=++.+++|||+-.-.++... ....+.+.|.|.+|..|=-.
T Consensus 304 lld~i~~~l~rplk~RvEQvi~se~~~i~~yki~~LL~fY~~ 345 (618)
T PF06419_consen 304 LLDRILEGLCRPLKIRVEQVISSEEDPITLYKIANLLSFYQM 345 (618)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHH
Confidence 36788999999887666652 33456899999999998543
No 16
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.70 E-value=21 Score=33.18 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCcc-ceeHHHHHHhhhhhcCceeEEEeCCC
Q 044323 18 ISQAMDGICGLYERKLKELNPAIRDI-TYDVADLYNFIDGLADMSALVYDHSI 69 (93)
Q Consensus 18 v~~~megIC~~yE~~LK~~nP~~~~I-tYdis~Lf~fiD~l~Dls~LV~~~~~ 69 (93)
..+-+|++|.+.+..++..-|. . -|-+.+|+.||+++...+|.|--.-+
T Consensus 717 ~s~vve~~C~i~~~~v~~~~~s---F~~p~l~~l~~Fi~r~~~~~~a~tl~l~ 766 (982)
T KOG2022|consen 717 LSDVVEASCIIMVKGVRSLLTS---FPEPMLPSLCPFIVRFLTSCLAVTLSLI 766 (982)
T ss_pred chhHHHHHHHHHHhcccccccc---chhhhHHHHHHHHHHhccchHHHHHHHH
Confidence 3567899999999885554443 4 67799999999999988887654333
No 17
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=40.81 E-value=10 Score=32.34 Aligned_cols=54 Identities=24% Similarity=0.284 Sum_probs=42.7
Q ss_pred CCccccccCCHHHHHHHHHHHHHHH------------HHhhC-CCCCccceeHHHHHHhhhhhcCce
Q 044323 8 ATRTFMDYGSISQAMDGICGLYERK------------LKELN-PAIRDITYDVADLYNFIDGLADMS 61 (93)
Q Consensus 8 ~sRTy~DyeSv~~~megIC~~yE~~------------LK~~n-P~~~~ItYdis~Lf~fiD~l~Dls 61 (93)
.+|.=+|+.|....++.||++--+. |-++. ..+..|++=|.|++.|+|+..|+-
T Consensus 41 qtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~ 107 (439)
T KOG1498|consen 41 QTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRGQLKQAIQSMVQQAMTYIDGTPDLE 107 (439)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCCch
Confidence 4688899999999999999985433 33333 345689999999999999998764
No 18
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=40.53 E-value=50 Score=24.94 Aligned_cols=70 Identities=11% Similarity=0.190 Sum_probs=47.7
Q ss_pred cccCCHHHHHHHHHHHHHHHHHhhCCCCCccceeHHHHHHhhh-hhcCceeEEEeCCCCcccCCChhHHHHHHHHHHH
Q 044323 13 MDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFID-GLADMSALVYDHSIQAYLPYDRQWIKQRTFQHLK 89 (93)
Q Consensus 13 ~DyeSv~~~megIC~~yE~~LK~~nP~~~~ItYdis~Lf~fiD-~l~Dls~LV~~~~~~~Y~P~~K~WIKeki~~~L~ 89 (93)
-.|-+|..-|-++|+.|=+||--..-+..+-+-+++.||+++- +|.|-- |..|.-|+..-=|+||-.++.
T Consensus 68 ~~ftkVhkhmP~~~~s~Lehllg~~~~~~n~~i~~~~ff~~lQ~~lGdWI-------T~~~Lkh~n~MSk~Qik~L~~ 138 (175)
T PF04876_consen 68 PLFTKVHKHMPEFCHSFLEHLLGGEDDSTNGLIDIGKFFDILQPKLGDWI-------TKNFLKHPNRMSKDQIKTLCE 138 (175)
T ss_pred cchHHHHHHhhHHHHHHHHHHhcCCcCCcccceeHHHHHHHHHHHhhhHH-------HHHHHhccchhhHHHHHHHHH
Confidence 3688999999999999999988764444456678899999873 444421 334555555555666655544
No 19
>cd07895 Adenylation_mRNA_capping Adenylation domain of GTP-dependent mRNA capping enzymes. RNA capping enzymes transfer GMP from GTP to the 5'-diphosphate end of nascent mRNAs to form a G(5')ppp(5')RNA cap structure. The RNA cap is found only in eukarya. RNA capping is chemically analogous to the first two steps of polynucleotide ligation. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. Structural studies reveal a shared structure for DNA ligases and capping enzymes, with a common catalytic core composed of an adenylation or nucleotidyltransferase domain and a C-terminal OB-fold domain containing conserved sequence motifs. The adenylation domain binds ATP and contains many active site residues.
Probab=38.83 E-value=18 Score=26.35 Aligned_cols=36 Identities=19% Similarity=0.408 Sum_probs=28.8
Q ss_pred eHHHHHHhhh--hhcCceeEEEeCCCCcccC-CChhHHH
Q 044323 46 DVADLYNFID--GLADMSALVYDHSIQAYLP-YDRQWIK 81 (93)
Q Consensus 46 dis~Lf~fiD--~l~Dls~LV~~~~~~~Y~P-~~K~WIK 81 (93)
++.++|+.+. --...==||+.+....|.| .++.|+|
T Consensus 174 ~~~~~~~~~~~~~~~~~EGlIfk~~~~~Y~~Gr~~~~lK 212 (215)
T cd07895 174 KIEKLFEKIIPKLPHENDGLIFTPNDEPYVPGTDKNLLK 212 (215)
T ss_pred hHHHHHHhccccCCCCCCCEEEccCCCCccCccCCccee
Confidence 6777777774 3345667999999999999 9999998
No 20
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=34.01 E-value=18 Score=26.92 Aligned_cols=21 Identities=19% Similarity=0.566 Sum_probs=15.3
Q ss_pred CceeEEEeCCCCcccCCChhH
Q 044323 59 DMSALVYDHSIQAYLPYDRQW 79 (93)
Q Consensus 59 Dls~LV~~~~~~~Y~P~~K~W 79 (93)
.|+=|.-....+.|.|||++|
T Consensus 68 ELaHl~ly~~~gr~~phg~ew 88 (156)
T COG3091 68 ELAHLHLYQEFGRYKPHGKEW 88 (156)
T ss_pred HHHHHHHHHHcCCCCCCchhH
Confidence 344455555677899999998
No 21
>PF07179 SseB: SseB protein N-terminal domain; InterPro: IPR009839 This family consists of several SseB proteins, which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli [] and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon [].
Probab=33.20 E-value=1.2e+02 Score=19.28 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=32.0
Q ss_pred CCccceeHHHHHHhhhhhcCceeEEEeCCCCcccCCChhHHH
Q 044323 40 IRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWIK 81 (93)
Q Consensus 40 ~~~ItYdis~Lf~fiD~l~Dls~LV~~~~~~~Y~P~~K~WIK 81 (93)
.+.+.-...+|++++- -.+..-+|.|+.+..-...+++.|.
T Consensus 82 ~~~~~~~~~~l~~~~~-~~~~~giviNP~~~~~~~l~~~~i~ 122 (124)
T PF07179_consen 82 RPIIVVPFEDLLEMLL-NNEGDGIVINPGTPSGFVLPREEIE 122 (124)
T ss_pred CceecccHHHHHHHhh-cCCCcEEEEECCCCceEEECHHHHh
Confidence 3445778899999986 5677999999999865777777664
No 22
>PF09904 HTH_43: Winged helix-turn helix; InterPro: IPR017162 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 3KE2_B.
Probab=33.02 E-value=44 Score=22.77 Aligned_cols=17 Identities=29% Similarity=0.595 Sum_probs=12.1
Q ss_pred ccCCChhHHHHHHHHHH
Q 044323 72 YLPYDRQWIKQRTFQHL 88 (93)
Q Consensus 72 Y~P~~K~WIKeki~~~L 88 (93)
+=|.|++||++++=+..
T Consensus 71 WG~id~~wi~~~~~~i~ 87 (90)
T PF09904_consen 71 WGPIDRKWIADHLQEIK 87 (90)
T ss_dssp -TTB-HHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 35999999999876544
No 23
>KOG2090 consensus Metalloendopeptidase family - mitochondrial intermediate peptidase [Posttranslational modification, protein turnover, chaperones]
Probab=32.67 E-value=51 Score=29.74 Aligned_cols=32 Identities=19% Similarity=0.409 Sum_probs=27.3
Q ss_pred CCCCCCCCccccccCCHHHHHHHHHHHHHHHH
Q 044323 2 QTSPSRATRTFMDYGSISQAMDGICGLYERKL 33 (93)
Q Consensus 2 Q~~~~~~sRTy~DyeSv~~~megIC~~yE~~L 33 (93)
|+..+++.-.|+.|=|+..||||+-.++++-.
T Consensus 357 ~~~~~~~~~~~~~fFslg~~ieGLs~L~~~Ly 388 (704)
T KOG2090|consen 357 QSNNSLNPSIYSPFFSLGSCIEGLSTLFQRLY 388 (704)
T ss_pred cccCCCCcceeeccccHHHHHHHHHHHHHHHh
Confidence 45667777889999999999999999998764
No 24
>PRK04358 hypothetical protein; Provisional
Probab=32.63 E-value=25 Score=27.43 Aligned_cols=27 Identities=15% Similarity=0.238 Sum_probs=20.8
Q ss_pred CCCCccccccCCHHHHHHHHHHHHHHH
Q 044323 6 SRATRTFMDYGSISQAMDGICGLYERK 32 (93)
Q Consensus 6 ~~~sRTy~DyeSv~~~megIC~~yE~~ 32 (93)
+|+.|.....+++.+||+.++.+=-+.
T Consensus 15 ~p~vr~~fg~e~l~ea~~~~l~Lia~a 41 (217)
T PRK04358 15 DPDVREQFGVEDLEEAVEKFLDLIARA 41 (217)
T ss_pred CHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 566677778899999999998875444
No 25
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.14 E-value=70 Score=28.29 Aligned_cols=51 Identities=25% Similarity=0.401 Sum_probs=41.8
Q ss_pred CCCCCccccccCCHHHHH-------------HHHHHHHH-----------------------HHHHhhCCCCCccceeHH
Q 044323 5 PSRATRTFMDYGSISQAM-------------DGICGLYE-----------------------RKLKELNPAIRDITYDVA 48 (93)
Q Consensus 5 ~~~~sRTy~DyeSv~~~m-------------egIC~~yE-----------------------~~LK~~nP~~~~ItYdis 48 (93)
.-...|.-.||.|.|=|= |.||+++| +||-++.|+--+++=+|+
T Consensus 184 ~l~~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp~Ig 263 (656)
T KOG4426|consen 184 TLSVKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSPPIG 263 (656)
T ss_pred ccceeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchhccCCCch
Confidence 334568889999988763 57999998 688999999999999999
Q ss_pred HHHHhhh
Q 044323 49 DLYNFID 55 (93)
Q Consensus 49 ~Lf~fiD 55 (93)
||--|--
T Consensus 264 DLQvFYk 270 (656)
T KOG4426|consen 264 DLQVFYK 270 (656)
T ss_pred hHHHHHH
Confidence 9987754
No 26
>PF04852 DUF640: Protein of unknown function (DUF640); InterPro: IPR006936 This conserved region is found in plant proteins including the resistance protein-like protein (O49468 from SWISSPROT).
Probab=31.02 E-value=1.3e+02 Score=21.96 Aligned_cols=56 Identities=14% Similarity=0.204 Sum_probs=38.2
Q ss_pred CCCCCCCccccccCCHHHHHHHHHHHHHHHHHhhCCCCCcccee---HHHHHHhhhhhcCce
Q 044323 3 TSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYD---VADLYNFIDGLADMS 61 (93)
Q Consensus 3 ~~~~~~sRTy~DyeSv~~~megIC~~yE~~LK~~nP~~~~ItYd---is~Lf~fiD~l~Dls 61 (93)
.+....+.+++.|+|-.-... ..|.+.|+...|-+.--+-. |-++..|.|....-.
T Consensus 7 ~~~~~~~~~~SrYesQKrrdw---ntf~qyL~n~rPP~~L~~csg~hVl~FL~~~d~~GkTk 65 (132)
T PF04852_consen 7 TSSRSPQPAPSRYESQKRRDW---NTFGQYLRNHRPPLSLSRCSGNHVLEFLRYLDQFGKTK 65 (132)
T ss_pred CCCCCCCCCCcccchhhhHHH---HHHHHHHHccCCCcchhhcChHHHHHHHHHHhccCCee
Confidence 445556678899999988777 56788888888876655544 444455556655443
No 27
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=30.80 E-value=58 Score=15.45 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCc
Q 044323 22 MDGICGLYERKLKELNPAIRD 42 (93)
Q Consensus 22 megIC~~yE~~LK~~nP~~~~ 42 (93)
++.+..+||+.|+. .|..+.
T Consensus 3 ~~~~r~i~e~~l~~-~~~~~~ 22 (33)
T smart00386 3 IERARKIYERALEK-FPKSVE 22 (33)
T ss_pred HHHHHHHHHHHHHH-CCCChH
Confidence 46678899999954 464443
No 28
>cd07996 WGR_MMR_like WGR domain of molybdate metabolism regulator and related proteins. The WGR domain is found in the putative Escherichia coli molybdate metabolism regulator and related bacterial proteins, as well as in various other bacterial proteins of unknown function. It has been called WGR after the most conserved central motif of the domain. The domain appears to occur in single-domain proteins and in a variety of domain architectures, together with ATP-dependent DNA ligase domains, WD40 repeats, leucine-rich repeats, and other domains. It has been proposed to function as a nucleic acid binding domain.
Probab=30.11 E-value=75 Score=19.32 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.8
Q ss_pred ccCCHHHHHHHHHHHHHHHHHh
Q 044323 14 DYGSISQAMDGICGLYERKLKE 35 (93)
Q Consensus 14 DyeSv~~~megIC~~yE~~LK~ 35 (93)
.|.|..+|+....+++.+++++
T Consensus 48 ~~~s~~~A~~~~~k~~~~K~~~ 69 (74)
T cd07996 48 TFDSEEEALKAAEKLIREKLKR 69 (74)
T ss_pred ECCCHHHHHHHHHHHHHHHHhc
Confidence 4889999999999999999876
No 29
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=28.75 E-value=49 Score=27.10 Aligned_cols=45 Identities=22% Similarity=0.492 Sum_probs=32.5
Q ss_pred cccCCHHHHHHHHHHHHHHHHHhh---------------------CCCCCccceeH-HHHHHhhhhh
Q 044323 13 MDYGSISQAMDGICGLYERKLKEL---------------------NPAIRDITYDV-ADLYNFIDGL 57 (93)
Q Consensus 13 ~DyeSv~~~megIC~~yE~~LK~~---------------------nP~~~~ItYdi-s~Lf~fiD~l 57 (93)
+|.+.|.-|+.|++++|+++|-+. +|....++.+| -++|+|+=.+
T Consensus 6 ~~~~dv~~av~GLi~if~~Kl~~lp~sha~~v~~lLi~hl~~hY~~~~~~~~~~~iR~~iF~~lL~l 72 (356)
T PF03542_consen 6 SDLEDVKTAVDGLIEIFKEKLYRLPSSHAIRVYELLIDHLELHYERPYVFEIASSIRLKIFDCLLKL 72 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHH
Confidence 466778999999999999998776 34455556666 4677776443
No 30
>smart00455 RBD Raf-like Ras-binding domain.
Probab=28.51 E-value=50 Score=20.74 Aligned_cols=14 Identities=7% Similarity=0.019 Sum_probs=12.2
Q ss_pred CCHHHHHHHHHHHH
Q 044323 16 GSISQAMDGICGLY 29 (93)
Q Consensus 16 eSv~~~megIC~~y 29 (93)
.|+.|+++++|+.+
T Consensus 20 ~tl~e~L~~~~~kr 33 (70)
T smart00455 20 KTVRDALAKALKKR 33 (70)
T ss_pred CCHHHHHHHHHHHc
Confidence 58999999999865
No 31
>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]
Probab=28.40 E-value=93 Score=26.52 Aligned_cols=58 Identities=16% Similarity=0.383 Sum_probs=42.1
Q ss_pred HHhhCCCCCccceeHHHHHHhhhhhcCceeEEEeCCC---------CcccCCChhHHHHHHHHHHHhh
Q 044323 33 LKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSI---------QAYLPYDRQWIKQRTFQHLKKL 91 (93)
Q Consensus 33 LK~~nP~~~~ItYdis~Lf~fiD~l~Dls~LV~~~~~---------~~Y~P~~K~WIKeki~~~L~~~ 91 (93)
|.+.|-+.|+=..-+.++.+|+| +..=+|+||+--. |.|+||--+=|.+.-++.+...
T Consensus 139 Lqki~~~DP~g~~rcv~m~~wFd-yrghiCivfellG~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv 205 (415)
T KOG0671|consen 139 LQKINESDPNGKFRCVQMRDWFD-YRGHICIVFELLGLSTFDFLKENNYIPFPIDHIRHMGYQLLESV 205 (415)
T ss_pred HHHHHhcCCCCceEEEeeehhhh-ccCceEEEEeccChhHHHHhccCCccccchHHHHHHHHHHHHHH
Confidence 33444445545556777877777 6677889998654 7899999998888888887754
No 32
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=26.04 E-value=58 Score=20.40 Aligned_cols=14 Identities=21% Similarity=0.311 Sum_probs=12.1
Q ss_pred CCHHHHHHHHHHHH
Q 044323 16 GSISQAMDGICGLY 29 (93)
Q Consensus 16 eSv~~~megIC~~y 29 (93)
.|+.||+.++|+.+
T Consensus 21 ~ti~d~L~~~~~kr 34 (71)
T PF02196_consen 21 MTIRDALSKACKKR 34 (71)
T ss_dssp SBHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHc
Confidence 68999999999853
No 33
>PF15467 SGIII: Secretogranin-3
Probab=25.71 E-value=59 Score=27.73 Aligned_cols=38 Identities=32% Similarity=0.365 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCCccceeHHHHHHhhhhhcC
Q 044323 21 AMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLAD 59 (93)
Q Consensus 21 ~megIC~~yE~~LK~~nP~~~~ItYdis~Lf~fiD~l~D 59 (93)
-||+|-+-- +-||+.|..-..--||+|-|=+|||.=+|
T Consensus 393 YLEAIRKNI-EWLKkHnK~gnKeDyDLSKlrDFi~QQaD 430 (453)
T PF15467_consen 393 YLEAIRKNI-EWLKKHNKEGNKEDYDLSKLRDFIDQQAD 430 (453)
T ss_pred HHHHHHHHH-HHHHHhccccccccccHHHHHHHHHHHHH
Confidence 356665544 46888888888889999999999998766
No 34
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=25.68 E-value=14 Score=32.49 Aligned_cols=33 Identities=39% Similarity=0.751 Sum_probs=23.7
Q ss_pred CCCCcccccc-----------CCHHHHHHHHHHHHHHHHHhhCCCCCc
Q 044323 6 SRATRTFMDY-----------GSISQAMDGICGLYERKLKELNPAIRD 42 (93)
Q Consensus 6 ~~~sRTy~Dy-----------eSv~~~megIC~~yE~~LK~~nP~~~~ 42 (93)
++.||-|.|| +|--.||+|||+|- -=.||.+|+
T Consensus 406 eIttreYCdFmrG~~HEeAtLCSQVhC~d~VCGll----PFln~e~Pd 449 (652)
T KOG2290|consen 406 EITTREYCDFMRGYFHEEATLCSQVHCFDGVCGLL----PFLNPEVPD 449 (652)
T ss_pred eechHHHHHHHhhhhhhhhhhhhhhhhhhcccccc----cccCCCChh
Confidence 5678999997 57778999999973 234555443
No 35
>PF03081 Exo70: Exo70 exocyst complex subunit; InterPro: IPR004140 The Exo70 protein forms one subunit of the exocyst complex. First discovered in Saccharomyces cerevisiae [], Exo70 and other exocyst proteins have been observed in several other eukaryotes, including humans. In S. cerevisiae, the exocyst complex is involved in the late stages of exocytosis, and is localized at the tip of the bud, the major site of exocytosis in yeast []. Exo70 interacts with the Rho3 GTPase []. This interaction mediates one of the three known functions of Rho3 in cell polarity: vesicle docking and fusion with the plasma membrane (the other two functions are regulation of actin polarity and transport of exocytic vesicles from the mother cell to the bud) []. In humans, the functions of Exo70 and the exocyst complex are less well characterised: Exo70 is expressed in several tissues and is thought to also be involved in exocytosis [].; GO: 0006887 exocytosis, 0000145 exocyst; PDB: 2PFV_A 2B7M_B 2B1E_A 2PFT_A.
Probab=25.56 E-value=1.7e+02 Score=22.71 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCCC----ccceeHHHHHHhhhhh
Q 044323 20 QAMDGICGLYERKLKELNPAIR----DITYDVADLYNFIDGL 57 (93)
Q Consensus 20 ~~megIC~~yE~~LK~~nP~~~----~ItYdis~Lf~fiD~l 57 (93)
+..+-|+-.|.+++.+-..... -|.|+..||=+.|++|
T Consensus 330 ~i~~~v~p~Y~~F~~~~~~~~~~~~Kyikyt~~~le~~l~~L 371 (371)
T PF03081_consen 330 EIKEKVVPAYRRFYERYRNSQFNPEKYIKYTPEDLENMLNEL 371 (371)
T ss_dssp HHHHHHHHHHHHHHHHCCCCSSSHCCC-SS-HHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcccccCCCCCCccCHHHHHHHHHcC
Confidence 3446678888888877544333 5899999998888875
No 36
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=25.20 E-value=45 Score=22.96 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=12.1
Q ss_pred HHHHHhhCCCCC-ccce
Q 044323 30 ERKLKELNPAIR-DITY 45 (93)
Q Consensus 30 E~~LK~~nP~~~-~ItY 45 (93)
|..|+|++|+.+ ++||
T Consensus 26 ~aal~RKyp~~~f~~~Y 42 (93)
T PF07315_consen 26 EAALKRKYPDQPFEFTY 42 (93)
T ss_dssp HHHHHHH-TTS-EEEEE
T ss_pred HHHHhCcCCCCceEEEE
Confidence 678999999997 7777
No 37
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=24.59 E-value=42 Score=21.21 Aligned_cols=20 Identities=25% Similarity=0.306 Sum_probs=16.5
Q ss_pred CCccccccCCHHHHHHHHHH
Q 044323 8 ATRTFMDYGSISQAMDGICG 27 (93)
Q Consensus 8 ~sRTy~DyeSv~~~megIC~ 27 (93)
.+|.|.|++-|..+||.+..
T Consensus 10 GgR~~~D~~~i~~~Ld~~~~ 29 (71)
T PF10686_consen 10 GGRDWTDHELIWAALDKVHA 29 (71)
T ss_pred ECCccccHHHHHHHHHHHHH
Confidence 47999999999999996543
No 38
>PRK05911 RNA polymerase sigma factor sigma-28; Reviewed
Probab=24.46 E-value=40 Score=25.47 Aligned_cols=67 Identities=18% Similarity=0.280 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCC---CccceeHHHHHH-----hhhhhcCceeEEEeCCCC-cccCCChhHHHHHHHHHHHh
Q 044323 20 QAMDGICGLYERKLKELNPAI---RDITYDVADLYN-----FIDGLADMSALVYDHSIQ-AYLPYDRQWIKQRTFQHLKK 90 (93)
Q Consensus 20 ~~megIC~~yE~~LK~~nP~~---~~ItYdis~Lf~-----fiD~l~Dls~LV~~~~~~-~Y~P~~K~WIKeki~~~L~~ 90 (93)
+|-+.+..-|....+..--.. ..-..+..||+. ++..+.. ||++.+ .+.-|-..|||..|..+|++
T Consensus 23 ~ar~~Li~~~~~lV~~ia~~~~~~~~~~~~~eDL~QeG~igL~~ai~~-----fd~~~g~~F~tya~~~Ir~~i~~~lr~ 97 (257)
T PRK05911 23 EYRDVLIEFYLPLVKNVAHRLISGMPSHVKTEDLYASGVEGLVRAVER-----FDPEKSRRFEGYALFLIKAAIIDDLRK 97 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHh-----cCCccCCCHHHHHHHHHHHHHHHHHHh
Confidence 366666666666554431110 111234666643 3333332 577666 67888899999999999997
Q ss_pred h
Q 044323 91 L 91 (93)
Q Consensus 91 ~ 91 (93)
+
T Consensus 98 ~ 98 (257)
T PRK05911 98 Q 98 (257)
T ss_pred c
Confidence 5
No 39
>PF12645 HTH_16: Helix-turn-helix domain; InterPro: IPR024760 This domain appears to be a helix-turn-helix domain, suggesting a transcriptional regulatory protein. Some proteins with this domain are annotated as conjugative transposon proteins.
Probab=24.26 E-value=1e+02 Score=19.15 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 044323 19 SQAMDGICGLYERKLKE 35 (93)
Q Consensus 19 ~~~megIC~~yE~~LK~ 35 (93)
.+||+.|.+.||..+.+
T Consensus 12 ~~A~~~IL~~y~~yI~k 28 (65)
T PF12645_consen 12 PEAMEEILKHYEPYISK 28 (65)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47999999999998875
No 40
>PHA02996 poly(A) polymerase large subunit; Provisional
Probab=22.61 E-value=74 Score=27.41 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCC
Q 044323 17 SISQAMDGICGLYERKLKELNPA 39 (93)
Q Consensus 17 Sv~~~megIC~~yE~~LK~~nP~ 39 (93)
-|++-++-||++-||+||+.|-+
T Consensus 147 ~VSdLV~~V~klmeEyLrrhNk~ 169 (467)
T PHA02996 147 NVSDLVGNVNKLMEEYLRRHNKS 169 (467)
T ss_pred cccHHHHHHHHHHHHHHHhcCCc
Confidence 45667899999999999998654
No 41
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=22.56 E-value=99 Score=20.61 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=23.2
Q ss_pred ccceeHHHHHHhhhhhcCceeEEEeCC
Q 044323 42 DITYDVADLYNFIDGLADMSALVYDHS 68 (93)
Q Consensus 42 ~ItYdis~Lf~fiD~l~Dls~LV~~~~ 68 (93)
...-+..|+..+|.+.+|++|+|.+-+
T Consensus 21 v~~~~~dd~~~~i~~~~~i~avvi~~d 47 (115)
T PF03709_consen 21 VDADSTDDALAIIESFTDIAAVVISWD 47 (115)
T ss_dssp EEESSHHHHHHHHHCTTTEEEEEEECH
T ss_pred EEeCChHHHHHHHHhCCCeeEEEEEcc
Confidence 345678899999999999999999865
No 42
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=22.31 E-value=1.2e+02 Score=22.89 Aligned_cols=28 Identities=36% Similarity=0.389 Sum_probs=24.9
Q ss_pred CCCccccccCCHHHHHHHHHHHHHHHHH
Q 044323 7 RATRTFMDYGSISQAMDGICGLYERKLK 34 (93)
Q Consensus 7 ~~sRTy~DyeSv~~~megIC~~yE~~LK 34 (93)
..||+|+.-.|+-+-++||=.++-..|+
T Consensus 184 ITs~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (213)
T cd03133 184 VTTPAYMLADSIHEIADGIEKLVAKVLK 211 (213)
T ss_pred EeCccccCCCCHHHHHHhHHHHHHHHHh
Confidence 5689999999999999999999877664
No 43
>PF11112 PyocinActivator: Pyocin activator protein PrtN
Probab=21.01 E-value=1.6e+02 Score=19.06 Aligned_cols=13 Identities=38% Similarity=0.493 Sum_probs=10.6
Q ss_pred eeHHHHHHhhhhh
Q 044323 45 YDVADLYNFIDGL 57 (93)
Q Consensus 45 Ydis~Lf~fiD~l 57 (93)
=.|.||-+|||+=
T Consensus 59 V~v~dLA~yiD~~ 71 (76)
T PF11112_consen 59 VHVQDLAAYIDKR 71 (76)
T ss_pred eeHHHHHHHHHHH
Confidence 3589999999963
No 44
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=20.92 E-value=73 Score=27.38 Aligned_cols=32 Identities=28% Similarity=0.663 Sum_probs=24.6
Q ss_pred ceeHHHHHHhhhhhcCceeEEEeCCCCcccCCC
Q 044323 44 TYDVADLYNFIDGLADMSALVYDHSIQAYLPYD 76 (93)
Q Consensus 44 tYdis~Lf~fiD~l~Dls~LV~~~~~~~Y~P~~ 76 (93)
+=.-.+||+|+|.++.+| ..-|.....|.||-
T Consensus 263 ~AsddeL~~~l~~isg~s-~ysDq~l~~y~pyy 294 (448)
T PF05576_consen 263 TASDDELFDFLDAISGFS-FYSDQGLEPYTPYY 294 (448)
T ss_pred CCCHHHHHHHHHhhcCcc-ccccCCcccccChH
Confidence 344578999999999999 44566667888873
No 45
>PRK13916 plasmid segregation protein ParR; Provisional
Probab=20.64 E-value=59 Score=22.43 Aligned_cols=17 Identities=12% Similarity=0.534 Sum_probs=13.1
Q ss_pred eHHHHHHhhhhhcCcee
Q 044323 46 DVADLYNFIDGLADMSA 62 (93)
Q Consensus 46 dis~Lf~fiD~l~Dls~ 62 (93)
|-++||+|+..+.|=.+
T Consensus 16 ~~~~iF~FL~~~P~GT~ 32 (97)
T PRK13916 16 DYPQIFDFLENVPRGTK 32 (97)
T ss_pred ccHHHHHHHHHCCCCCc
Confidence 45899999999887443
No 46
>PRK09956 hypothetical protein; Provisional
Probab=20.60 E-value=3e+02 Score=21.75 Aligned_cols=27 Identities=11% Similarity=-0.010 Sum_probs=21.5
Q ss_pred cccccCCHHHHHHHHHHHHHHHHHhhC
Q 044323 11 TFMDYGSISQAMDGICGLYERKLKELN 37 (93)
Q Consensus 11 Ty~DyeSv~~~megIC~~yE~~LK~~n 37 (93)
++.|+.-.-..|-+++.+|+++|++-+
T Consensus 85 S~~d~~m~~Rll~Y~~~~~~~~l~~g~ 111 (308)
T PRK09956 85 SSAEKNMAFRLMRYATAAMQRHLDKGY 111 (308)
T ss_pred CCCCCChhhHHHHHHHHHHHHHHhcCC
Confidence 345666677889999999999998864
No 47
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=20.28 E-value=56 Score=17.63 Aligned_cols=7 Identities=43% Similarity=1.075 Sum_probs=5.3
Q ss_pred hhHHHHH
Q 044323 77 RQWIKQR 83 (93)
Q Consensus 77 K~WIKek 83 (93)
-.|||++
T Consensus 17 ISWIK~k 23 (26)
T PF01372_consen 17 ISWIKNK 23 (26)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4699886
No 48
>TIGR03875 RNA_lig_partner RNA ligase partner, MJ_0950 family. This uncharacterized protein family is found almost perfectly in the same set of genomes as the Pab1020 family described by model TIGR01209. These pairs are found mostly in Archaea, but also in a few bacteria (e.g. Alkalilimnicola ehrlichei MLHE-1, Aquifex aeolicus). While the partner protein has been described as homodimeric ligase that has RNA circularization activity, the function of this protein (also called UPF0278) is unknown.
Probab=20.06 E-value=1.1e+02 Score=23.84 Aligned_cols=64 Identities=17% Similarity=0.227 Sum_probs=37.1
Q ss_pred CCCCccccccCCHHHHHHHHHHHHHHHHHhhCC--CCCccceeHHHHHHhhhhhcCc--------eeEEEeCCCCcc
Q 044323 6 SRATRTFMDYGSISQAMDGICGLYERKLKELNP--AIRDITYDVADLYNFIDGLADM--------SALVYDHSIQAY 72 (93)
Q Consensus 6 ~~~sRTy~DyeSv~~~megIC~~yE~~LK~~nP--~~~~ItYdis~Lf~fiD~l~Dl--------s~LV~~~~~~~Y 72 (93)
+|+.|-....+++.+||+.++.+=.+.=-+.+- .+|.-.| .+|-.|++ ..++ -..|.-++.+.|
T Consensus 11 dp~vr~~fg~~~l~ea~~~~l~Lia~arl~l~iscYmPpsVy--~El~~fl~-~~~~~~e~~~kl~twv~~KsP~ry 84 (206)
T TIGR03875 11 DPELREQLGDEDLCEAVRTFLDLIARARLKLGIECYMPPSVY--KELRRFLE-RNGCDPETLAKLDTWVVKKSPNRY 84 (206)
T ss_pred CHHHHHHcCCCCHHHHHHHHHHHHHHhhhccCceeecCHHHH--HHHHHHHH-hcCCCHHHHHhheeEEEEcCCCee
Confidence 566676668899999999999887766111110 1233333 46666765 2333 355555555544
Done!