Query 044323
Match_columns 93
No_of_seqs 95 out of 97
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 23:47:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044323.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044323hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nml_A Enhancer of rudimentary 100.0 4.4E-60 1.5E-64 325.8 7.6 93 1-93 8-100 (104)
2 2lu1_A Subtilase; SUB2 inhibit 50.3 2.7 9.1E-05 29.8 -0.5 34 21-54 49-82 (149)
3 2i39_A Protein N1, N1L protein 47.6 22 0.00074 25.0 3.8 41 17-59 85-127 (137)
4 2lix_A IMKTX104, potassium cha 36.5 11 0.00037 19.6 0.0 18 10-27 8-25 (27)
5 2gzd_C RAB11 family-interactin 26.0 25 0.00085 23.8 1.2 54 4-57 23-79 (107)
6 3sj5_A Methyl-accepting chemot 25.3 32 0.0011 24.0 1.8 40 17-60 62-101 (188)
7 1jy2_O Fibrinogen beta chain; 24.7 35 0.0012 20.6 1.6 30 26-59 27-56 (56)
8 3c1q_A General secretion pathw 22.4 31 0.0011 21.6 1.1 30 16-45 90-119 (123)
9 2eoc_A Poly [ADP-ribose] polym 21.6 59 0.002 21.4 2.4 24 14-37 81-104 (124)
10 1xg8_A Hypothetical protein SA 20.3 46 0.0016 22.6 1.6 16 30-45 36-52 (111)
No 1
>2nml_A Enhancer of rudimentary homolog; HEF2/ERH fold, pseudo beta barrel, interaction network, transcription, cell cycle; 1.55A {Homo sapiens} SCOP: d.330.1.1 PDB: 1w9g_A 1wwq_A 1wz7_A
Probab=100.00 E-value=4.4e-60 Score=325.75 Aligned_cols=93 Identities=42% Similarity=0.886 Sum_probs=91.7
Q ss_pred CCCCCCCCCccccccCCHHHHHHHHHHHHHHHHHhhCCCCCccceeHHHHHHhhhhhcCceeEEEeCCCCcccCCChhHH
Q 044323 1 MQTSPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADMSALVYDHSIQAYLPYDRQWI 80 (93)
Q Consensus 1 vQ~~~~~~sRTy~DyeSv~~~megIC~~yE~~LK~~nP~~~~ItYdis~Lf~fiD~l~Dls~LV~~~~~~~Y~P~~K~WI 80 (93)
|||+++++||||+|||||++||||||++||++||++||++++|||||+|||+|||+|+|||||||++++++|+||||+||
T Consensus 8 vQp~~~~~sRTy~DyeSv~~~megiC~iYE~~LK~~nP~~~~ItYdI~~Lf~fID~l~DlscLV~~~~t~~Y~P~~K~WI 87 (104)
T 2nml_A 8 VQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWI 87 (104)
T ss_dssp EECSSCGGGCEEEEESSHHHHHHHHHHHHHHHHHHHSTTCSSCCCCHHHHHHHHHHSSEEEEEEEETTTTEEEEECHHHH
T ss_pred EecCCCCCcceeeccccHHHHHHHHHHHHHHHHHHcCCCCCccccCHHHHHHHHhcccccceEEEeCCCCccCCCCHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhC
Q 044323 81 KQRTFQHLKKLAH 93 (93)
Q Consensus 81 Keki~~~L~~~a~ 93 (93)
|||||++||++|+
T Consensus 88 Keki~~~L~~~a~ 100 (104)
T 2nml_A 88 KEKIYVLLRRQAQ 100 (104)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999984
No 2
>2lu1_A Subtilase; SUB2 inhibitor prodomain, hydrolase; NMR {Plasmodium falciparum}
Probab=50.28 E-value=2.7 Score=29.85 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhhCCCCCccceeHHHHHHhh
Q 044323 21 AMDGICGLYERKLKELNPAIRDITYDVADLYNFI 54 (93)
Q Consensus 21 ~megIC~~yE~~LK~~nP~~~~ItYdis~Lf~fi 54 (93)
.+..--..||++++.....+.+|.||||-=.+|+
T Consensus 49 VI~~an~kf~~yi~~hFk~v~~i~YDiSsPInF~ 82 (149)
T 2lu1_A 49 VINNAKKNLEKYFKEHFKEFDKISYDISTPINFL 82 (149)
T ss_dssp HHHHHHHHHHHHHHHSSSCCCCCEEEEETTTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeeecCCCceEE
Confidence 3444556899999999999999999999877763
No 3
>2i39_A Protein N1, N1L protein; all alpha, viral protein; 2.20A {Vaccinia virus} PDB: 2uxe_A
Probab=47.61 E-value=22 Score=25.00 Aligned_cols=41 Identities=17% Similarity=0.162 Sum_probs=28.4
Q ss_pred CHHHHHH--HHHHHHHHHHHhhCCCCCccceeHHHHHHhhhhhcC
Q 044323 17 SISQAMD--GICGLYERKLKELNPAIRDITYDVADLYNFIDGLAD 59 (93)
Q Consensus 17 Sv~~~me--gIC~~yE~~LK~~nP~~~~ItYdis~Lf~fiD~l~D 59 (93)
++-.|.| |+|++--|.. .++.--+--.-+..||++|+.+.|
T Consensus 85 ~v~~~~E~IGlCaivaE~~--~~~~~inW~~vf~~LF~vi~~~~~ 127 (137)
T 2i39_A 85 NIEDAKRMIAISAKVARDI--GERSEIRWEESFTILFRMIETYFD 127 (137)
T ss_dssp SHHHHHHHHHHHHHHHHHH--CTTCCCCHHHHHHHHHHHHGGGHH
T ss_pred cccCHHHHHHHHHHHHHHH--cccccccHHHHHHHHHHHHHHHHH
Confidence 5566655 9999998888 333333334446899999998865
No 4
>2lix_A IMKTX104, potassium channel toxins; disulfide bond stabilized structure; NMR {Lychas mucronatus}
Probab=36.46 E-value=11 Score=19.61 Aligned_cols=18 Identities=33% Similarity=0.693 Sum_probs=15.2
Q ss_pred ccccccCCHHHHHHHHHH
Q 044323 10 RTFMDYGSISQAMDGICG 27 (93)
Q Consensus 10 RTy~DyeSv~~~megIC~ 27 (93)
-|-.=|+++.-|+||-|+
T Consensus 8 ctllcydtigtcvdgkck 25 (27)
T 2lix_A 8 CTLLCYDTIGTCVDGKCK 25 (27)
Confidence 456679999999999997
No 5
>2gzd_C RAB11 family-interacting protein 2; G protein folds, A-helical coiled coil, protein transport; HET: GTP; 2.44A {Homo sapiens} SCOP: h.1.31.1 PDB: 2gzh_B* 2k6s_A
Probab=26.02 E-value=25 Score=23.79 Aligned_cols=54 Identities=20% Similarity=0.247 Sum_probs=11.4
Q ss_pred CCCCCCccccccCCHHHHHHHHHHHHHHHHHhhCCCCCccc---eeHHHHHHhhhhh
Q 044323 4 SPSRATRTFMDYGSISQAMDGICGLYERKLKELNPAIRDIT---YDVADLYNFIDGL 57 (93)
Q Consensus 4 ~~~~~sRTy~DyeSv~~~megIC~~yE~~LK~~nP~~~~It---Ydis~Lf~fiD~l 57 (93)
+.+...|-=-|+.+.+.+-..=-.-.||-++...-....+. =.|.||=+|||+|
T Consensus 23 ~~~~d~~~~k~~~p~d~~a~Y~~lTrdELI~lllk~e~~l~~kd~~IrELEDYID~L 79 (107)
T 2gzd_C 23 TSNEDLRKIPDSNPFDATAGYRSLTYEEVLQELVKHKELLRRKDTHIRELEDYIDNL 79 (107)
T ss_dssp ----------------------------------------CCHHHHHHHHHHHHHHH
T ss_pred CccHHHHhcccCCccchhHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444333333223334444444333333332 3589999999987
No 6
>3sj5_A Methyl-accepting chemotaxis protein; no or O2-sensing protein, signaling protein; HET: HEM; 1.67A {Caldanaerobacter subterraneus} SCOP: d.278.1.1 PDB: 3nvr_A* 3tf0_A* 1u4h_A* 1u56_A* 3m0b_A* 1u55_A* 3tf1_A* 1xbn_A* 3nvu_A* 3eee_A* 3iqb_A* 3lah_A* 3lai_A*
Probab=25.34 E-value=32 Score=24.04 Aligned_cols=40 Identities=13% Similarity=0.196 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCccceeHHHHHHhhhhhcCc
Q 044323 17 SISQAMDGICGLYERKLKELNPAIRDITYDVADLYNFIDGLADM 60 (93)
Q Consensus 17 Sv~~~megIC~~yE~~LK~~nP~~~~ItYdis~Lf~fiD~l~Dl 60 (93)
|++++++.+.+-+=.++.+.+|..=. . .++++|+.+|-+|
T Consensus 62 ~~~~ll~~fG~~~~~~~~~~y~~~l~---g-~~~~dFL~~ld~l 101 (188)
T 3sj5_A 62 NVNEIWREVGRQNIKTFSEWFPSYFA---G-RRLVNFLMMMDEV 101 (188)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCGGGTT---T-CCHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHHhC---C-CCHHHHHHHHHHH
Confidence 67888888888888888888887543 3 6788888777654
No 7
>1jy2_O Fibrinogen beta chain; fragment E, disulfide bonds, asymmetry, coiled- coil, beta-sheet, blood clotting; 1.40A {Bos taurus} SCOP: h.1.8.1 PDB: 1jy3_O
Probab=24.65 E-value=35 Score=20.64 Aligned_cols=30 Identities=27% Similarity=0.502 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhCCCCCccceeHHHHHHhhhhhcC
Q 044323 26 CGLYERKLKELNPAIRDITYDVADLYNFIDGLAD 59 (93)
Q Consensus 26 C~~yE~~LK~~nP~~~~ItYdis~Lf~fiD~l~D 59 (93)
|.+=+..||.. ++|.+.|++|-+=+|+|++
T Consensus 27 CeLq~tLlKQE----r~Vk~si~~Lk~~v~~~Sq 56 (56)
T 1jy2_O 27 CKLQDTLVRQE----RPIRKSIEDLRNTVDSVSR 56 (56)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHTC--
T ss_pred chHHHHHHHhh----cchhhhHHHHHHHHHHhcC
Confidence 77777888887 7799999999999998763
No 8
>3c1q_A General secretion pathway protein F; type 2 secretion system, T2SS, T4PB, inner membrane membrane, transmembrane, transport protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB: 2vmb_A* 2vma_A*
Probab=22.40 E-value=31 Score=21.57 Aligned_cols=30 Identities=10% Similarity=0.166 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhhCCCCCccce
Q 044323 16 GSISQAMDGICGLYERKLKELNPAIRDITY 45 (93)
Q Consensus 16 eSv~~~megIC~~yE~~LK~~nP~~~~ItY 45 (93)
.++.++|+.+...||+..+...--...++|
T Consensus 90 G~L~~~L~~la~~~e~~~~~~~~~~~al~Y 119 (123)
T 3c1q_A 90 GHLDSVLERLADYAENRQKMRSKLQQASEN 119 (123)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 367899999999999998876544444444
No 9
>2eoc_A Poly [ADP-ribose] polymerase 3; anti-parallel beta-sheet, cell cycle control, DNA damage, transcription, NAD+, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.55 E-value=59 Score=21.40 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=20.7
Q ss_pred ccCCHHHHHHHHHHHHHHHHHhhC
Q 044323 14 DYGSISQAMDGICGLYERKLKELN 37 (93)
Q Consensus 14 DyeSv~~~megIC~~yE~~LK~~n 37 (93)
.|.|..+|+...+++|.++.++..
T Consensus 81 ~~~s~~~A~~~F~k~f~~Ktgn~w 104 (124)
T 2eoc_A 81 HFTRLEDAKKDFEKKFREKTKNNW 104 (124)
T ss_dssp EESSHHHHHHHHHHHHHHHHSSCS
T ss_pred cCCCHHHHHHHHHHHHHHHHcCCc
Confidence 578999999999999999976543
No 10
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=20.26 E-value=46 Score=22.61 Aligned_cols=16 Identities=38% Similarity=0.501 Sum_probs=13.9
Q ss_pred HHHHHhhCCCCC-ccce
Q 044323 30 ERKLKELNPAIR-DITY 45 (93)
Q Consensus 30 E~~LK~~nP~~~-~ItY 45 (93)
|..|+|+.|+.+ ++||
T Consensus 36 qAal~RKyp~~~f~~~Y 52 (111)
T 1xg8_A 36 QPLLKRKYPNISFKYTY 52 (111)
T ss_dssp HHHHHHHCTTSCEEEEE
T ss_pred HHHHhCcCCCCceEEEE
Confidence 678999999887 8887
Done!