Query 044324
Match_columns 291
No_of_seqs 142 out of 578
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 23:48:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044324.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044324hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tod_A Lactotransferrin; C-LOB 100.0 6.7E-69 2.3E-73 510.8 15.7 209 63-290 2-228 (335)
2 3skp_A Serotransferrin; iron b 100.0 3.3E-68 1.1E-72 507.2 15.4 208 63-290 3-222 (342)
3 3mc2_A Inhibitor of carbonic a 100.0 1.1E-65 3.7E-70 525.4 15.8 211 60-290 337-568 (687)
4 3v83_A Serotransferrin; iron b 100.0 5.8E-65 2E-69 521.3 13.7 210 61-290 357-578 (698)
5 3mc2_A Inhibitor of carbonic a 100.0 3.1E-61 1.1E-65 492.5 16.7 204 60-278 7-224 (687)
6 1iej_A Ovotransferrin; iron, m 100.0 4.9E-60 1.7E-64 449.7 16.7 203 63-273 5-217 (332)
7 2d3i_A Ovotransferrin; aluminu 100.0 3.3E-60 1.1E-64 485.9 15.2 209 61-290 341-566 (686)
8 3v83_A Serotransferrin; iron b 100.0 5.1E-60 1.7E-64 484.8 16.4 211 54-276 14-235 (698)
9 1blf_A Lactoferrin; transferri 100.0 4E-60 1.4E-64 485.8 15.6 207 62-287 342-565 (689)
10 1cb6_A Protein (lactoferrin); 100.0 6.2E-60 2.1E-64 484.2 14.3 207 62-287 342-567 (691)
11 2d3i_A Ovotransferrin; aluminu 100.0 4.1E-59 1.4E-63 477.8 16.0 204 61-273 3-217 (686)
12 1h45_A Lactoferrin; metal tran 100.0 6E-59 2.1E-63 442.5 15.7 203 61-273 3-219 (334)
13 1cb6_A Protein (lactoferrin); 100.0 3.6E-59 1.2E-63 478.6 15.0 204 63-277 4-221 (691)
14 1blf_A Lactoferrin; transferri 100.0 1.5E-57 5.1E-62 466.8 16.4 205 61-276 2-220 (689)
15 1ryo_A Serotransferrin; iron t 100.0 1.2E-56 4E-61 425.7 14.6 200 61-273 2-214 (327)
16 2j4u_S Lactotransferrin, lacto 98.9 1.3E-11 4.6E-16 84.9 -4.7 42 61-103 2-45 (45)
17 3p7i_A PHND, subunit of alkylp 98.3 5.8E-07 2E-11 83.6 6.7 170 61-273 12-192 (321)
18 3n5l_A Binding protein compone 98.3 1.5E-06 5.1E-11 80.0 7.7 143 89-273 35-183 (310)
19 3ksx_A Nitrate transport prote 97.0 0.0021 7.2E-08 58.0 8.9 99 89-197 57-156 (324)
20 3ix1_A N-formyl-4-amino-5-amin 96.9 0.0014 4.8E-08 58.4 6.3 98 89-197 33-131 (302)
21 3qsl_A Putative exported prote 96.4 0.0058 2E-07 54.6 7.1 98 89-196 63-163 (346)
22 3uif_A Sulfonate ABC transport 96.4 0.0074 2.5E-07 55.1 7.8 103 84-197 38-144 (348)
23 3un6_A Hypothetical protein sa 96.3 0.0047 1.6E-07 56.3 6.0 125 62-198 51-181 (341)
24 4esw_A Pyrimidine biosynthesis 95.9 0.013 4.4E-07 53.6 6.7 100 88-198 36-136 (342)
25 2x26_A Periplasmic aliphatic s 95.8 0.019 6.5E-07 50.9 7.1 98 90-197 32-130 (308)
26 4ddd_A Immunogenic protein; ss 95.7 0.037 1.3E-06 50.9 9.1 109 60-179 29-155 (327)
27 4f3p_A Glutamine-binding perip 95.0 0.028 9.5E-07 47.7 5.3 116 47-175 7-135 (249)
28 3del_B Arginine binding protei 94.9 0.038 1.3E-06 46.3 5.7 75 89-175 49-123 (242)
29 3kzg_A Arginine 3RD transport 94.4 0.051 1.7E-06 45.6 5.3 75 88-175 41-115 (237)
30 1ii5_A SLR1257 protein; membra 94.2 0.048 1.7E-06 45.0 4.8 75 89-175 43-121 (233)
31 3hv1_A Polar amino acid ABC up 94.0 0.075 2.6E-06 45.5 5.7 133 85-273 55-190 (268)
32 4eq9_A ABC transporter substra 93.9 0.078 2.7E-06 44.2 5.5 82 79-175 35-120 (246)
33 2pvu_A ARTJ; basic amino acid 93.8 0.067 2.3E-06 46.1 5.1 75 89-176 79-153 (272)
34 2pyy_A Ionotropic glutamate re 93.8 0.067 2.3E-06 43.8 4.8 76 89-175 39-117 (228)
35 1wdn_A GLNBP, glutamine bindin 93.7 0.085 2.9E-06 43.2 5.2 71 89-175 40-114 (226)
36 3tql_A Arginine-binding protei 93.4 0.11 3.6E-06 42.6 5.4 76 87-175 38-114 (227)
37 3h7m_A Sensor protein; histidi 93.3 0.15 5E-06 42.1 6.2 124 89-273 49-173 (234)
38 1us5_A Putative GLUR0 ligand b 93.3 0.24 8.3E-06 43.7 8.0 123 62-196 18-156 (314)
39 2vha_A Periplasmic binding tra 93.1 0.12 3.9E-06 44.9 5.5 71 90-175 63-135 (287)
40 3mpk_A Virulence sensor protei 93.0 0.33 1.1E-05 41.8 8.2 77 89-177 70-146 (267)
41 2yjp_A Putative ABC transporte 92.7 0.084 2.9E-06 46.4 3.9 74 89-175 96-169 (291)
42 2iee_A ORF2, probable ABC tran 92.6 0.093 3.2E-06 45.4 4.0 74 88-175 61-137 (271)
43 2y7i_A STM4351; arginine-bindi 92.2 0.12 4E-06 42.6 4.1 74 88-175 43-117 (229)
44 3qax_A Probable ABC transporte 91.9 0.24 8.1E-06 41.8 5.7 76 89-175 69-144 (268)
45 2v25_A Major cell-binding fact 91.8 0.097 3.3E-06 43.9 3.1 74 90-176 81-154 (259)
46 2yln_A Putative ABC transporte 91.6 0.12 4E-06 45.4 3.5 75 89-175 95-169 (283)
47 1xt8_A Putative amino-acid tra 90.3 0.3 1E-05 42.6 4.9 74 89-175 85-158 (292)
48 1lst_A Lysine, arginine, ornit 90.2 0.1 3.4E-06 43.4 1.7 74 89-175 42-116 (239)
49 4dz1_A DALS D-alanine transpor 89.7 0.3 1E-05 41.8 4.3 132 89-273 67-199 (259)
50 4i62_A Amino acid ABC transpor 89.5 0.29 9.9E-06 41.2 4.1 76 89-175 80-155 (269)
51 1xs5_A 29 kDa protein, membran 89.3 0.81 2.8E-05 40.6 7.0 98 84-196 24-125 (241)
52 2czl_A Hypothetical protein TT 89.3 0.17 6E-06 44.0 2.5 88 90-193 30-117 (272)
53 2nxo_A Hypothetical protein SC 87.8 0.28 9.4E-06 43.8 2.9 91 92-196 35-127 (291)
54 1mqi_A Glutamate receptor 2; G 87.6 0.5 1.7E-05 40.1 4.3 65 99-175 70-134 (263)
55 1sw5_A Osmoprotection protein 87.4 0.76 2.6E-05 40.9 5.5 105 63-172 6-135 (275)
56 3kbr_A Cyclohexadienyl dehydra 86.5 0.33 1.1E-05 40.3 2.5 74 88-175 52-130 (239)
57 1zbm_A Hypothetical protein AF 86.2 0.23 7.9E-06 43.4 1.4 76 89-181 37-114 (280)
58 2x7q_A Ca3427, possible thiami 85.9 1.3 4.5E-05 39.6 6.3 83 89-181 43-129 (321)
59 3g3k_A Glutamate receptor, ion 85.5 0.35 1.2E-05 41.0 2.2 64 97-172 68-131 (259)
60 1p99_A Hypothetical protein PG 82.5 1.6 5.5E-05 39.8 5.4 98 84-196 59-161 (295)
61 3k4u_A Binding component of AB 81.3 1.8 6.1E-05 36.1 4.9 75 89-175 43-120 (245)
62 2q88_A EHUB, putative ABC tran 80.8 0.92 3.1E-05 38.1 2.9 74 89-175 50-129 (257)
63 2g29_A Nitrate transport prote 80.1 3 0.0001 39.3 6.5 100 88-198 60-182 (417)
64 4gvo_A LMO2349 protein; struct 78.3 1.1 3.9E-05 37.8 2.7 76 89-175 48-123 (243)
65 3ho7_A OXYR; beta-alpha-barrel 77.1 17 0.00058 29.1 9.5 103 61-177 9-115 (232)
66 3hn0_A Nitrate transport prote 76.9 4.2 0.00014 36.0 6.1 87 89-196 32-121 (283)
67 3jv9_A OXYR, transcriptional r 75.3 16 0.00055 28.8 8.8 102 62-177 3-108 (219)
68 3i6v_A Periplasmic His/Glu/Gln 74.6 4.4 0.00015 33.7 5.3 68 89-175 43-111 (232)
69 3tmg_A Glycine betaine, L-prol 73.6 23 0.0008 31.5 10.3 113 62-185 15-135 (280)
70 2de3_A Dibenzothiophene desulf 72.1 2.7 9.2E-05 38.9 3.7 77 89-177 46-126 (365)
71 2pfz_A Putative exported prote 71.7 3.5 0.00012 37.0 4.3 31 90-120 34-67 (301)
72 4ab5_A Transcriptional regulat 70.7 12 0.0004 29.8 6.9 102 61-176 6-111 (222)
73 4ib2_A Putative lipoprotein; p 69.9 13 0.00045 33.5 7.6 118 63-196 11-133 (252)
74 1i6a_A OXYR, hydrogen peroxide 69.9 29 0.00099 27.8 9.3 101 62-175 4-107 (219)
75 2v3u_A Glutamate receptor delt 69.9 4.8 0.00016 33.6 4.5 64 98-174 65-128 (265)
76 2i49_A Bicarbonate transporter 69.2 6.8 0.00023 37.3 5.9 103 88-198 63-190 (429)
77 2zzv_A ABC transporter, solute 69.1 0.88 3E-05 42.1 -0.3 31 90-120 67-100 (361)
78 4ef1_A Pheromone COB1/lipoprot 68.5 11 0.00039 33.8 6.9 97 85-196 26-126 (246)
79 2hzl_A Trap-T family sorbitol/ 68.5 0.73 2.5E-05 42.7 -1.0 32 90-121 66-100 (365)
80 2rc8_A Glutamate [NMDA] recept 67.9 3.2 0.00011 36.4 3.1 64 97-175 102-175 (294)
81 2pfy_A Putative exported prote 67.7 6.7 0.00023 35.1 5.3 31 90-120 35-68 (301)
82 2vpn_A Periplasmic substrate b 64.9 8.9 0.0003 34.6 5.5 31 90-120 32-65 (316)
83 2y7p_A LYSR-type regulatory pr 64.1 13 0.00045 30.3 6.1 99 61-173 6-107 (218)
84 1ixc_A CBNR, LYSR-type regulat 63.5 60 0.0021 27.1 10.4 103 61-177 89-195 (294)
85 2qpq_A Protein BUG27; alpha/be 62.8 4.8 0.00016 36.6 3.3 163 61-277 6-195 (301)
86 3oxn_A Putative transcriptiona 62.8 15 0.00051 30.0 6.2 103 60-176 16-121 (241)
87 2rin_A Putative glycine betain 62.3 20 0.00067 32.2 7.3 110 62-186 6-131 (298)
88 2xwv_A Sialic acid-binding per 61.7 8.9 0.0003 34.7 4.9 31 90-120 36-69 (312)
89 1yae_A Glutamate receptor, ion 59.8 4.8 0.00016 35.4 2.7 20 97-116 77-96 (312)
90 2f5x_A BUGD; periplasmic bindi 58.8 5.6 0.00019 36.5 3.0 164 60-277 14-204 (312)
91 3gxa_A Outer membrane lipoprot 57.6 9.2 0.00031 35.1 4.2 119 63-196 23-146 (275)
92 2hpg_A ABC transporter, peripl 57.0 7.7 0.00026 35.5 3.6 31 90-120 42-75 (327)
93 2a5s_A N-methyl-D-aspartate re 56.1 6.5 0.00022 34.1 2.9 62 97-171 91-153 (284)
94 3del_B Arginine binding protei 55.7 20 0.00069 29.2 5.8 50 65-122 119-169 (242)
95 2ql3_A Probable transcriptiona 52.5 39 0.0013 26.5 6.9 100 62-175 4-108 (209)
96 1twy_A ABC transporter, peripl 51.4 49 0.0017 27.5 7.7 56 61-119 26-84 (290)
97 2fyi_A HTH-type transcriptiona 49.9 55 0.0019 26.4 7.5 103 61-176 12-118 (228)
98 1pb7_A N-methyl-D-aspartate re 49.5 19 0.00065 31.4 4.8 58 99-169 105-163 (292)
99 4e7p_A Response regulator; DNA 49.2 52 0.0018 24.9 6.9 59 61-120 17-75 (150)
100 3tqw_A Methionine-binding prot 46.5 23 0.00077 31.7 4.9 93 89-196 30-126 (240)
101 3qax_A Probable ABC transporte 46.1 23 0.00079 29.2 4.7 32 91-122 159-190 (268)
102 3l6g_A Betaine ABC transporter 45.3 1.2E+02 0.0041 26.3 9.5 111 64-186 3-119 (256)
103 2xxp_A CPS2A; replication, pep 45.2 12 0.0004 35.8 2.9 44 145-194 15-58 (398)
104 3fxq_A LYSR type regulator of 44.8 46 0.0016 28.4 6.5 101 62-178 91-197 (305)
105 3mpk_A Virulence sensor protei 44.7 14 0.00049 31.2 3.2 52 64-122 139-191 (267)
106 4h5g_A Amino acid ABC superfam 43.2 8.4 0.00029 32.3 1.4 50 65-121 124-174 (243)
107 3k2d_A ABC-type metal ION tran 41.4 15 0.00051 32.9 2.8 93 89-196 33-129 (237)
108 2i6e_A Hypothetical protein; N 40.6 26 0.00088 31.5 4.3 85 96-196 43-129 (301)
109 4f3p_A Glutamine-binding perip 40.1 27 0.00091 28.9 4.1 52 64-122 130-182 (249)
110 1uth_A LYSR-type regulatory pr 39.5 41 0.0014 29.1 5.4 98 62-172 104-203 (315)
111 3ir1_A Outer membrane lipoprot 39.5 51 0.0018 29.5 6.1 97 85-196 24-124 (245)
112 2hxr_A HTH-type transcriptiona 39.3 51 0.0018 26.5 5.7 100 61-175 28-132 (238)
113 3i6v_A Periplasmic His/Glu/Gln 39.3 40 0.0014 27.6 5.1 48 66-122 108-156 (232)
114 4dz1_A DALS D-alanine transpor 39.1 28 0.00094 29.2 4.1 31 92-122 165-195 (259)
115 3onm_A Transcriptional regulat 38.0 1.3E+02 0.0045 24.2 8.1 80 60-155 24-106 (238)
116 3up9_A Putative uncharacterize 37.9 19 0.00066 32.3 3.0 93 89-196 34-130 (245)
117 4eq9_A ABC transporter substra 36.8 11 0.00037 30.8 1.1 31 92-122 142-173 (246)
118 3kht_A Response regulator; PSI 36.7 89 0.003 23.2 6.4 56 64-120 5-60 (144)
119 3ilh_A Two component response 36.4 1.1E+02 0.0039 22.3 6.9 58 62-120 7-69 (146)
120 4i62_A Amino acid ABC transpor 35.7 17 0.00058 30.1 2.2 32 91-122 171-202 (269)
121 2h9b_A HTH-type transcriptiona 35.3 2.1E+02 0.0071 24.3 12.2 99 64-176 91-195 (312)
122 2dvz_A BUGE, putative exported 35.1 6.9 0.00023 35.9 -0.5 163 61-277 17-208 (314)
123 2esn_A Probable transcriptiona 34.1 60 0.0021 27.5 5.5 101 61-175 99-205 (310)
124 1r9l_A Glycine betaine-binding 33.6 24 0.00082 31.8 2.9 103 63-170 8-116 (309)
125 3hhf_B Transcriptional regulat 32.9 76 0.0026 24.7 5.6 99 61-174 5-105 (213)
126 2vha_A Periplasmic binding tra 31.2 29 0.00098 29.4 2.9 54 65-121 131-185 (287)
127 3t8y_A CHEB, chemotaxis respon 29.4 1.5E+02 0.0051 22.8 6.8 59 61-120 22-80 (164)
128 3gt7_A Sensor protein; structu 29.3 1.2E+02 0.004 23.0 6.1 55 63-120 6-60 (154)
129 2y7i_A STM4351; arginine-bindi 29.3 44 0.0015 26.7 3.6 52 64-122 112-164 (229)
130 3isp_A HTH-type transcriptiona 28.9 96 0.0033 26.2 5.9 102 61-178 93-197 (303)
131 1k66_A Phytochrome response re 28.4 1.1E+02 0.0036 22.6 5.5 57 63-120 5-71 (149)
132 2h98_A HTH-type transcriptiona 27.9 2.9E+02 0.0098 23.6 9.7 99 64-176 91-195 (313)
133 3k4u_A Binding component of AB 27.8 44 0.0015 27.3 3.4 51 64-121 115-166 (245)
134 3tql_A Arginine-binding protei 27.6 40 0.0014 26.7 3.1 53 63-122 108-162 (227)
135 1i3c_A Response regulator RCP1 27.4 1.9E+02 0.0066 21.5 7.4 57 63-120 7-70 (149)
136 3kzg_A Arginine 3RD transport 26.9 51 0.0017 26.7 3.7 52 64-122 110-162 (237)
137 1atg_A MODA, periplasmic molyb 26.7 73 0.0025 25.3 4.5 68 90-171 27-102 (231)
138 3hv2_A Response regulator/HD d 26.5 2E+02 0.0069 21.5 6.9 56 62-120 12-67 (153)
139 3eod_A Protein HNR; response r 26.1 1.7E+02 0.0059 21.0 6.3 55 63-120 6-60 (130)
140 2jz2_A SSL0352 protein; SH3-li 26.0 22 0.00076 25.7 1.0 24 240-263 13-36 (66)
141 3h7m_A Sensor protein; histidi 25.9 45 0.0015 26.7 3.1 51 65-122 118-169 (234)
142 3kbr_A Cyclohexadienyl dehydra 25.7 41 0.0014 27.2 2.8 52 64-122 125-177 (239)
143 3i42_A Response regulator rece 25.6 1.5E+02 0.0051 21.3 5.8 53 65-120 4-56 (127)
144 3hv1_A Polar amino acid ABC up 24.9 43 0.0015 27.9 2.9 33 90-122 154-186 (268)
145 1lst_A Lysine, arginine, ornit 24.9 58 0.002 26.2 3.6 31 91-121 134-164 (239)
146 2ozz_A Hypothetical protein YH 24.3 21 0.00072 31.6 0.8 108 40-155 84-198 (231)
147 1k68_A Phytochrome response re 24.1 2E+02 0.0068 20.6 6.8 54 66-120 4-64 (140)
148 1ii5_A SLR1257 protein; membra 24.1 61 0.0021 25.8 3.5 50 64-122 116-166 (233)
149 4gvo_A LMO2349 protein; struct 23.9 30 0.001 28.7 1.7 28 95-122 148-175 (243)
150 3cg4_A Response regulator rece 23.7 1.5E+02 0.0051 21.7 5.6 56 62-120 5-60 (142)
151 2qr3_A Two-component system re 23.5 1.8E+02 0.0063 21.0 6.0 53 65-120 4-56 (140)
152 2rjn_A Response regulator rece 23.4 2.1E+02 0.0072 21.3 6.5 55 63-120 6-60 (154)
153 3m6m_D Sensory/regulatory prot 23.0 1.7E+02 0.0058 21.8 5.9 56 62-120 12-67 (143)
154 1wdn_A GLNBP, glutamine bindin 22.0 72 0.0025 25.1 3.6 51 64-121 109-160 (226)
155 3r0j_A Possible two component 21.5 1.4E+02 0.0049 24.8 5.6 56 62-120 21-76 (250)
156 2qxy_A Response regulator; reg 21.3 2.2E+02 0.0076 20.7 6.1 53 64-119 4-56 (142)
157 2q88_A EHUB, putative ABC tran 21.2 62 0.0021 26.5 3.1 33 90-122 145-177 (257)
158 3grc_A Sensor protein, kinase; 21.2 2.1E+02 0.0071 20.8 5.9 54 64-120 6-59 (140)
159 3hhg_A Transcriptional regulat 20.9 90 0.0031 26.2 4.1 99 61-174 91-191 (306)
No 1
>3tod_A Lactotransferrin; C-LOBE, metal binding protein, 1- butyl1-H-pyrazol-5-carboxy hydrolase; HET: NAG XXB; 1.38A {Bos taurus} PDB: 1sdx_A* 3u72_A* 3u8q_A* 3ugw_A* 3uk4_A* 3usd_A* 3v5a_A* 3vdf_A* 4dig_A* 4dxu_A* 4fim_A* 4fjp_A* 4for_A* 4g2z_A* 4grk_A* 2b6d_A* 2b65_A* 2doj_A* 2dp8_A* 2dqv_A* ...
Probab=100.00 E-value=6.7e-69 Score=510.75 Aligned_cols=209 Identities=34% Similarity=0.661 Sum_probs=189.3
Q ss_pred CceEEEecc-chHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEeec-
Q 044324 63 ATIKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYC- 140 (291)
Q Consensus 63 ~~vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y~- 140 (291)
++|||||+| .|++||++| +.++ .|.|+||.+.|++|||++|++|+||+++||++++|+|++ ++|+|||+|.|.
T Consensus 2 ~~vrWC~~s~~E~~KC~~~-~~~~---~~~i~Cv~~~s~~dCi~~I~~g~AD~~~ld~g~vy~Ag~-~~L~Pv~~E~y~~ 76 (335)
T 3tod_A 2 TRVVWCAVGPEEQKKCQQW-SQQS---GQNVTCATASTTDDCIVLVLKGEADALNLDGGYIYTAGK-CGLVPVLAENRKS 76 (335)
T ss_dssp CCEEEEEEHHHHHHHHHHH-HHHT---TTSEEEEEESSHHHHHHHHHHTSCCEEEECHHHHHHHHH-TTCEEEEEEEECC
T ss_pred CceEEccCCHHHHHHHHHH-HHhC---CCCeEEEecCCHHHHHHHHHcCCCCEEEECchheEEecc-CCceeEEEEeecc
Confidence 579999999 999999999 5443 489999999999999999999999999999999999985 899999999997
Q ss_pred ---C-C------CceeEEEEEEecCccccCCCCCcccCCCCcccCCCCCCCCCchhHHHHHHhCCCCCCCCCCchhhhhh
Q 044324 141 ---D-H------AQSYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGSTPTFDSGKISDIEIAS 210 (291)
Q Consensus 141 ---~-~------~~~Y~aVAVVkK~~~~~S~~~~l~dLkGKksCHtG~~~taGW~iPvg~L~~~~~~c~~~~~~~~~~~s 210 (291)
+ + ..+||+||||||+ +++++|+||||||+||||+++++||+||++.|+++...| ++ +
T Consensus 77 ~~~~~~~~~~~~~~~YyaVAVVkKs----~s~~tl~dLrGKksCHtg~g~tAGW~iP~g~L~~~~~~c--------~~-s 143 (335)
T 3tod_A 77 SKHSSLDCVLRPTEGYLAVAVVKKA----NEGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQTGSC--------AF-D 143 (335)
T ss_dssp SSCCCSCGGGSCCCCEEEEEEEETT----CTTCCGGGCTTCEEEESCTTCTTTTHHHHHHHHHHHTCS--------CG-G
T ss_pred cccccccccCCccceEEEEEEEEcC----CCCCCHHHcCCCCccCCCCCCccchhhhhhhhhhcCCCC--------CH-H
Confidence 3 1 2369999999995 446799999999999999999999999999998875556 36 9
Q ss_pred ccccccCCCCCCCCCCCCcCCCCC---CCCCC--CCCCccCccccccccccCCCcEEEEechhhhhhhcCCCCCcccccc
Q 044324 211 SFFSEVCAPGEFEGTGMCSGCGIE---NGSCH--SNSLYFGDSGAFRCLVEELGDIAFVRGDTALLYSKEGPQNQSWSSK 285 (291)
Q Consensus 211 ~FFs~SCvPG~~~~~~LC~lC~g~---~~~C~--~~e~Y~Gy~GAlrCL~eg~GDVAFVk~~tV~~~~~dg~~~~~Wa~~ 285 (291)
+||++||+||++.+++||+||.|+ .++|+ ++|+||||.||||||+||+||||||||+||++++ +|+++++||++
T Consensus 144 ~FFs~sC~PG~~~~~~LC~lC~g~~~~~~kC~~~~~e~Y~Gy~GAfrCL~eg~GDVAFvkh~tV~~~~-~g~~~~~wa~~ 222 (335)
T 3tod_A 144 EFFSQSCAPGADPKSRLCALCAGDDQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVKNDTVWENT-NGESTADWAKN 222 (335)
T ss_dssp GSSSEEECTTSCTTSGGGTTCCCSTTSTTTTCSSTTSTTCHHHHHHHHHHTTSCSEEEEEHHHHHHTS-TTSCCSTTTTT
T ss_pred HhhhhhccCCCCCCcchhhhcCCCCCccCcCCCCCCCcCcCCCcceeeeccCCCcEEEEechhHHhhc-CCCCchhhhcc
Confidence 999999999999999999999995 36897 7899999999999999999999999999999999 99999999987
Q ss_pred cc-ccc
Q 044324 286 SV-RDF 290 (291)
Q Consensus 286 ~~-~~~ 290 (291)
.. +||
T Consensus 223 ~~~~dy 228 (335)
T 3tod_A 223 LKREDF 228 (335)
T ss_dssp CCGGGE
T ss_pred CChhhe
Confidence 65 445
No 2
>3skp_A Serotransferrin; iron binding protein, transferrin receptor, TBP metal binding protein; 1.70A {Homo sapiens} PDB: 3v89_B 1suv_E
Probab=100.00 E-value=3.3e-68 Score=507.21 Aligned_cols=208 Identities=32% Similarity=0.650 Sum_probs=190.1
Q ss_pred CceEEEecc-chHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEeecC
Q 044324 63 ATIKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCD 141 (291)
Q Consensus 63 ~~vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y~~ 141 (291)
++|||||+| .|++||++| +.++ .+.|+||++.|+++||++|++|+||+++||++++|+|++ ++|+||++|.|.+
T Consensus 3 ~~vrWC~~s~~E~~KC~~~-~~~~---~~~v~Cv~a~s~~~Ci~~I~~g~AD~~~ld~~~vy~Ag~-~~L~Pv~~E~y~~ 77 (342)
T 3skp_A 3 KPVKWCALSHHERLKCDEW-SVNS---VGKIECVSAETTEDCIAKIMNGEADAMSLDGGFVYIAGK-CGLVPVLAENYNK 77 (342)
T ss_dssp CSEEEEECSHHHHHHHHHH-HHHT---TTSEEEEECSSHHHHHHHHHHTSCCBEEECHHHHHHHHH-TTCEEEEEEECSC
T ss_pred ceEEEeeCCHHHHHHHHHH-HHhc---CCCeEEEeCCCHHHHHHHHHcCCCCEEEECchheEEecc-CCcEEEEEEEeec
Confidence 579999999 999999999 6554 478999999999999999999999999999999999997 4999999999976
Q ss_pred C-------CceeEEEEEEecCccccCCCCCcccCCCCcccCCCCCCCCCchhHHHHHHhCCCCCCCCCCchhhhhhcccc
Q 044324 142 H-------AQSYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGSTPTFDSGKISDIEIASSFFS 214 (291)
Q Consensus 142 ~-------~~~Y~aVAVVkK~~~~~S~~~~l~dLkGKksCHtG~~~taGW~iPvg~L~~~~~~c~~~~~~~~~~~s~FFs 214 (291)
+ ..+||+||||||+ +++.+|+||||||+||||+++++||++|++.|+++...| ++ ++||+
T Consensus 78 ~~~~~~~~~~~YyaVAVVkK~----s~~~tl~dLrGKksCHtg~g~tAGW~iP~g~L~~~~~~c--------~~-s~FFs 144 (342)
T 3skp_A 78 SDNCEDTPEAGYFAVAVVKKS----ASDLTWDNLKGKKSCHTAVGRTAGWNIPMGLLYNKINHC--------RF-DEFFS 144 (342)
T ss_dssp CTTGGGSCCCCEEEEEEEETT----CSSCCGGGCTTSEEEESCTTCTTTTHHHHHHSGGGCSTT--------CG-GGSSS
T ss_pred CccccCCCcceEEEEEEEEcC----CCCCCHHHcCCCCccCCCCCCccchhhHHHHHhhccCCC--------CH-HHhhh
Confidence 3 2479999999997 668999999999999999999999999999998876556 46 99999
Q ss_pred ccCCCCCCCCCCCCcCCCCC-CCCCC--CCCCccCccccccccccCCCcEEEEechhhhhhhcCCCCCcccccccc-ccc
Q 044324 215 EVCAPGEFEGTGMCSGCGIE-NGSCH--SNSLYFGDSGAFRCLVEELGDIAFVRGDTALLYSKEGPQNQSWSSKSV-RDF 290 (291)
Q Consensus 215 ~SCvPG~~~~~~LC~lC~g~-~~~C~--~~e~Y~Gy~GAlrCL~eg~GDVAFVk~~tV~~~~~dg~~~~~Wa~~~~-~~~ 290 (291)
+||+||+..++|||+||.|+ .++|. ++|+||||.||||||+|| ||||||||+||++++ +|+++++||++.. +||
T Consensus 145 ~sC~PG~~~~~~LC~lC~g~~~~~C~~~~~e~Y~Gy~GAfrCL~eg-GDVAFvkh~tV~~~~-~g~~~~~wa~~~~~~dy 222 (342)
T 3skp_A 145 EGCAPGSKKDSSLCKLCMGSGLNLCEPNNKEGYYGYTGAFRCLVEK-GDVAFVKHQTVPQNT-GGKNPDPWAKNLNEKDY 222 (342)
T ss_dssp EEECTTSCTTSGGGTTCCCCGGGTTCSSTTSTTCHHHHHHHHHHHT-CSEEEEETTHHHHTS-TTSSCSTTTTTCCGGGE
T ss_pred hcccCCCCCccchhhhcCCCCCCCCCCCCCCcCcCCcchheeeccC-CcEEEEechhHHhhc-CCCCchhhhccCChhhE
Confidence 99999999999999999993 56897 789999999999999999 999999999999999 9999999988764 455
No 3
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily, lyase inhibitor; 2.40A {Mus musculus}
Probab=100.00 E-value=1.1e-65 Score=525.37 Aligned_cols=211 Identities=34% Similarity=0.673 Sum_probs=191.5
Q ss_pred CCCCceEEEecc-chHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEe
Q 044324 60 GSEATIKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEV 138 (291)
Q Consensus 60 ~~~~~vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~ 138 (291)
.+.++|||||+| .|++||++| +... .|.|+||++.|++|||++|++|+||+++||++++|+|++ |+|+|||+|.
T Consensus 337 ~~~~~vrWCv~s~~E~~KC~~~-~~~~---~p~~~Cv~~~s~~dCi~~I~~g~ADa~tldgg~vy~Ag~-~~L~Pv~~E~ 411 (687)
T 3mc2_A 337 EDSQRVKWCAVGQQERTKCDQW-SAVS---GGALACATEETPEDCIAATMKGEADAMSLDGGFAYVAGH-CGLVPVLAEN 411 (687)
T ss_dssp --CCCEEEEEESSHHHHHHHHH-HHHT---TTSEEEEEESSHHHHHHHHHHTSSCBEEECHHHHHHHHH-TTCEEEEECC
T ss_pred CCCCceEEccCCHHHHHHHHHH-Hhhc---CCceEEEeCCCHHHHHHHHhCCCCCEEEECchHheehhh-cCcEEEeeec
Confidence 467899999999 999999999 5432 489999999999999999999999999999999999998 9999999999
Q ss_pred ecCC--------------CceeEEEEEEecCccccCCCCCcccCCCCcccCCCCCCCCCchhHHHHHHhCCCCCCCCCCc
Q 044324 139 YCDH--------------AQSYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGSTPTFDSGKIS 204 (291)
Q Consensus 139 y~~~--------------~~~Y~aVAVVkK~~~~~S~~~~l~dLkGKksCHtG~~~taGW~iPvg~L~~~~~~c~~~~~~ 204 (291)
|... ...||+||||||+ +.+++|+||||||+||||+++++||++||++|+++...|
T Consensus 412 y~~~~~~~~~~~~c~~~~~~~YyaVAVVkks----~~~~~~~~LrGkkSCHtg~g~tAGWniP~g~L~~~~~~c------ 481 (687)
T 3mc2_A 412 YLSTHSSGRLGSKCVNAPLEGYYVVAVVKKS----DVGITWKSLQGKKSCHTAVGTSEGWNVPMGLIYDQTGSC------ 481 (687)
T ss_dssp BCCCSCSSCCSTTSTTCCCCCEEEEEEEESS----CSCCCTTCCTTSCEEESCTTCCCCCCTHHHHHHTTSCCS------
T ss_pred ccccccccccccccccCCCceEEEEEEEecC----CCCCCHhHcCCCCCCCCCCCCccchhhhHhhhhcCCCCC------
Confidence 9741 3479999999997 557999999999999999999999999999999875556
Q ss_pred hhhhhhccccccCCCCCCCCCCCCcCCCCC---CCCCC--CCCCccCccccccccccCCCcEEEEechhhhhhhcCCCCC
Q 044324 205 DIEIASSFFSEVCAPGEFEGTGMCSGCGIE---NGSCH--SNSLYFGDSGAFRCLVEELGDIAFVRGDTALLYSKEGPQN 279 (291)
Q Consensus 205 ~~~~~s~FFs~SCvPG~~~~~~LC~lC~g~---~~~C~--~~e~Y~Gy~GAlrCL~eg~GDVAFVk~~tV~~~~~dg~~~ 279 (291)
++ ++||++||+||++..++||+||.|+ +++|. ++|+||||.||||||+|| ||||||||+||++|+ +|+++
T Consensus 482 --~~-~~FFs~sC~PGa~~~~~LC~lC~g~~~~~~kC~~~~~e~Y~Gy~GAfrCL~eg-GDVAFVkh~tV~en~-~g~~~ 556 (687)
T 3mc2_A 482 --KF-DAFFSRSCAPGSDPDSPLCALCVGGNNPAHMCAANNAEGYHGSSGALRCLVEK-GDVAFMKHPTVLQNT-DGKNP 556 (687)
T ss_dssp --CH-HHHSSSEECTTSCTTSTTBSSCCCCSSTTCTTCSSSSSTTCHHHHHHHHHHHT-CSEEEECTTCSTTTS-TTSCC
T ss_pred --CH-HHhccccccCCCCCCcchHHhcCCCCCCCCcCCCCCCCcCcCCchhHHhhccC-CeEEEEeCCcHHhhc-CCCCc
Confidence 46 9999999999999999999999994 47897 789999999999999999 999999999999999 99999
Q ss_pred ccccccccc-cc
Q 044324 280 QSWSSKSVR-DF 290 (291)
Q Consensus 280 ~~Wa~~~~~-~~ 290 (291)
++||++... ||
T Consensus 557 ~~wa~~l~~~dy 568 (687)
T 3mc2_A 557 EPWAKGLKHEDF 568 (687)
T ss_dssp SGGGSSCCTTTE
T ss_pred hhhhhccCccce
Confidence 999988754 44
No 4
>3v83_A Serotransferrin; iron binding domain, iron carrier/transporter, transferrin R serum, metal transport; HET: P6G; 2.10A {Homo sapiens} PDB: 3v8x_B* 3qyt_A* 4h0w_A* 3ve1_B 2hav_A* 3s9l_C* 3s9m_C* 3s9n_C* 2hau_A* 1jnf_A 1h76_A*
Probab=100.00 E-value=5.8e-65 Score=521.35 Aligned_cols=210 Identities=32% Similarity=0.636 Sum_probs=191.8
Q ss_pred CCCceEEEecc-chHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEee
Q 044324 61 SEATIKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVY 139 (291)
Q Consensus 61 ~~~~vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y 139 (291)
+.++|||||+| .|++||++| +.+. .|.|+||++.|++|||++|++|+||+++||++++|+|++ |+|+|||+|.|
T Consensus 357 ~~~~vrwC~~s~~E~~KC~~~-~~~~---~~~i~Cv~a~s~~~Ci~~I~~g~AD~~~ld~~~vy~Ag~-~~L~Pv~~E~y 431 (698)
T 3v83_A 357 ECKPVKWCALSHHERLKCDEW-SVNS---VGKIECVSAETTEDCIAKIMNGEADAMSLDGGFVYIAGK-CGLVPVLAENY 431 (698)
T ss_dssp HCCCEEEEEEHHHHHHHHHHH-HHHT---TTSEEEEEESSHHHHHHHHHHTSCCEEEECHHHHHHHHH-TTCEEEEEEEC
T ss_pred CCCceEEeeCCHHHHHHHHHH-HHhc---CCCeEEEeCCCHHHHHHHHHcCCCCEEEECcHHHhhhhh-cCceEEEEEee
Confidence 45789999999 999999999 5542 479999999999999999999999999999999999998 99999999999
Q ss_pred cCC-------CceeEEEEEEecCccccCCCCCcccCCCCcccCCCCCCCCCchhHHHHHHhCCCCCCCCCCchhhhhhcc
Q 044324 140 CDH-------AQSYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGSTPTFDSGKISDIEIASSF 212 (291)
Q Consensus 140 ~~~-------~~~Y~aVAVVkK~~~~~S~~~~l~dLkGKksCHtG~~~taGW~iPvg~L~~~~~~c~~~~~~~~~~~s~F 212 (291)
.++ ...||+||||||+ +..++|+||||||+||||+++++||++|+++|+++...| ++ ++|
T Consensus 432 ~~~~~~~~~~~~~YyaVAVVkks----~s~~t~~dLrGKksCHtg~~~tAGw~iP~g~L~~~~~~c--------~~-~~F 498 (698)
T 3v83_A 432 NKSDNCEDTPEAGYFAVAVVKKS----ASDLTWDNLKGKKSCHTAVGRTAGWNIPMGLLYNKINHC--------RF-DEF 498 (698)
T ss_dssp SCCTTGGGCCCCCEEEEEEEETT----SCCCCSSTTTTCEEEESCTTCTTTTHHHHHHHHHHHCSS--------CH-HHH
T ss_pred ccccccccCCCCceEEEEEEecC----CCCCCHHHhCCCCccCCCCCCccccchhheehhcCCCCC--------CH-HHh
Confidence 765 3489999999996 457899999999999999999999999999998874446 46 999
Q ss_pred ccccCCCCCCCCCCCCcCCCCC-CCCCC--CCCCccCccccccccccCCCcEEEEechhhhhhhcCCCCCccccccccc-
Q 044324 213 FSEVCAPGEFEGTGMCSGCGIE-NGSCH--SNSLYFGDSGAFRCLVEELGDIAFVRGDTALLYSKEGPQNQSWSSKSVR- 288 (291)
Q Consensus 213 Fs~SCvPG~~~~~~LC~lC~g~-~~~C~--~~e~Y~Gy~GAlrCL~eg~GDVAFVk~~tV~~~~~dg~~~~~Wa~~~~~- 288 (291)
|++||+||++.+++||+||.|+ .++|. ++|+||||.||||||+|| ||||||||+||++|+ ||+++++||++...
T Consensus 499 Fs~sC~PG~~~~~~LC~lC~g~~~~kC~~~~~e~Y~Gy~GAfrCL~eg-GDVAFvkh~tv~~n~-~g~~~~~wa~~~~~~ 576 (698)
T 3v83_A 499 FSEGCAPGSKKDSSLCKLCMGSGLNLCEPNNKEGYYGYTGAFRCLVEK-GDVAFVKHQTVPQNT-GGKNPDPWAKNLNEK 576 (698)
T ss_dssp SSEEECTTSCTTSGGGTTCCCCGGGTTCSSTTSTTCHHHHHHHHHHHT-CSEEEEETTHHHHTS-TTSSCSTTTTTCCGG
T ss_pred hhhhccCCCCCCcchHHhcCCCCCCcCCCCCcCcCcCCcchHhhhccC-CeEEEEeCCcHHhhc-CCCCchhhhhccCcc
Confidence 9999999999999999999993 56897 799999999999999999 999999999999999 99999999988664
Q ss_pred cc
Q 044324 289 DF 290 (291)
Q Consensus 289 ~~ 290 (291)
||
T Consensus 577 dy 578 (698)
T 3v83_A 577 DY 578 (698)
T ss_dssp GE
T ss_pred cE
Confidence 45
No 5
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily, lyase inhibitor; 2.40A {Mus musculus}
Probab=100.00 E-value=3.1e-61 Score=492.51 Aligned_cols=204 Identities=26% Similarity=0.489 Sum_probs=183.0
Q ss_pred CCCCceEEEecc-chHHHHHHHHHHhhcCC----CcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeec-ccCCcEE
Q 044324 60 GSEATIKWCAVR-DQYEDCEYLVSIISQSE----DYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAF-LNFSMKA 133 (291)
Q Consensus 60 ~~~~~vRwCv~S-~E~~KC~~l~~~a~~~~----~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~-~~~~L~P 133 (291)
.|+.+|||||+| .|++||++| +.++++. .|.|+||++.|+.|||++|++|+||+++||++++|+|+ +.|+|+|
T Consensus 7 ~~~~~vrwCt~S~~E~~KC~~l-~~~~~~~~~~~~p~~~Cv~~~d~~~Ci~~I~~g~AD~~~ld~~~vy~A~~~~~~L~P 85 (687)
T 3mc2_A 7 LPEKTIRWCVVSDHEATKCSSF-RDNMKKVLPAGGPAVTCVRKMSHPECIRDISANKVDAVTVDGALVAEADLPHHSLKP 85 (687)
T ss_dssp --CCCEEEEECSSHHHHHHHHH-HHHHHHHCSSSSCCEEEEECSCHHHHHHHHHTTSCCBEEECTTGGGSCSSTTCCEEE
T ss_pred CCCCcEEEEECCHHHHHHHHHH-HHHHHHhccCCCCceEEEeCCCHHHHHHHHHCCCCCEEEEChHHHHhhhcccCCceE
Confidence 478899999999 999999999 6666642 48999999999999999999999999999999999998 7899999
Q ss_pred EEEEeecCCC---ceeEEEEEEecCccccCCCCCcccCCCCcccCCCCCCCCCchhHHHHHHhCCCCCCCCCCchhhhhh
Q 044324 134 IANEVYCDHA---QSYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGSTPTFDSGKISDIEIAS 210 (291)
Q Consensus 134 Il~E~y~~~~---~~Y~aVAVVkK~~~~~S~~~~l~dLkGKksCHtG~~~taGW~iPvg~L~~~~~~c~~~~~~~~~~~s 210 (291)
|++|.|.++. ..||+||||||+ +++ +|+||||||+||||+++++||++||++|+. .|+. ++++ +
T Consensus 86 i~~E~y~~~~~~~~~YyaVAVVkK~----s~i-~l~dLrGKksCHtg~g~taGw~iPi~~L~~---~~~~----~~av-s 152 (687)
T 3mc2_A 86 IMAEYYGSKDDPKTHYYVVAMAKKG----TGF-QLNQLRGKKSCHTGLGWSAGWYVPLSTLLP---SGSR----ETAA-A 152 (687)
T ss_dssp EEEEEEECSSSEECEEEEEEEEETT----TCC-CTTTTTTCEEEESCTTCTTTTHHHHHHTCC---TTCC----SSSH-H
T ss_pred EEEEeeecCCCCCceeEEEEEEECC----CCC-CHHHcCCCCcccCCCCCccchhhhHHHhcC---CCch----hHHH-H
Confidence 9999998754 699999999999 855 699999999999999999999999999972 2322 3577 9
Q ss_pred ccccccCCCCCCC--CCCCCcCCCCC-CCCCC--CCCCccCccccccccccCCCcEEEEechhhhhhhcCCCC
Q 044324 211 SFFSEVCAPGEFE--GTGMCSGCGIE-NGSCH--SNSLYFGDSGAFRCLVEELGDIAFVRGDTALLYSKEGPQ 278 (291)
Q Consensus 211 ~FFs~SCvPG~~~--~~~LC~lC~g~-~~~C~--~~e~Y~Gy~GAlrCL~eg~GDVAFVk~~tV~~~~~dg~~ 278 (291)
+||++||+||++. ++|||+||.|+ .++|+ ++|+||||.||||||+||+||||||||+||++++ ++++
T Consensus 153 ~FFs~SCvPG~~~~~y~~LC~lC~g~~~~~C~~~~~e~Y~Gy~GA~rCL~eg~GDVAFvkh~tV~e~~-~~~~ 224 (687)
T 3mc2_A 153 TFFSSSCVPCADGKMFPSLCQLCAGKGTDKCACSSREPYFGSWGALKCLQDGTADVSFVKHLTVFEAM-PTKA 224 (687)
T ss_dssp HHSSEEECTTSCTTTCGGGBSSCCCCTTSTTCSSTTSSSCHHHHTTHHHHTTSCSEEEEEHHHHTTSC-SSTT
T ss_pred HhhhhcccCCcCCCcchHHHhhcCCCCCCcCCCCCCCcCcCccchhhhhhhCCCcEEEEEchhhhhhc-CCCC
Confidence 9999999999987 58999999993 67897 6999999999999999999999999999999998 6653
No 6
>1iej_A Ovotransferrin; iron, metal binding protein; 1.65A {Gallus gallus} SCOP: c.94.1.2 PDB: 1tfa_A 1nft_A 1nnt_A 1ovb_A 1gv8_A 1gvc_A*
Probab=100.00 E-value=4.9e-60 Score=449.69 Aligned_cols=203 Identities=32% Similarity=0.622 Sum_probs=182.8
Q ss_pred CceEEEecc-chHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeec-ccCCcEEEEEEeec
Q 044324 63 ATIKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAF-LNFSMKAIANEVYC 140 (291)
Q Consensus 63 ~~vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~-~~~~L~PIl~E~y~ 140 (291)
.+|||||+| .|++||++| +.++...++.|+|+.++|+.+||++|++|+||+++||++++|+|+ +.++|+||++|.|.
T Consensus 5 ~~vrwCv~s~~E~~KC~~l-~~~~~~~~~~veCv~~~s~~~Ci~aI~~g~aD~~~ld~~~~~~A~~~~~~l~pi~~e~~~ 83 (332)
T 1iej_A 5 SVIRWCTISSPEEKKCNNL-RDLTQQERISLTCVQKATYLDCIKAIANNEADAITLDGGQVFEAGLAPYKLKPIAAEVYE 83 (332)
T ss_dssp EEEEEEESSHHHHHHHHHH-HHHTTTSSEEEEEEECSSHHHHHHHHHTTSCCBEEECHHHHHHHTSTTTCCEEEEEEEEE
T ss_pred CcEEEEECCHHHHHHHHHH-HHHHHhcCCceEEEEcCCHHHHHHHHHcCCCcEEEeCccceeEecccccCCEEEEEEEec
Confidence 469999999 999999999 666643459999999999999999999999999999999999998 78999999999997
Q ss_pred CC---CceeEEEEEEecCccccCCCCCcccCCCCcccCCCCCCCCCchhHHHHHHhCCCCCCCC----CCchhhhhhccc
Q 044324 141 DH---AQSYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGSTPTFDSG----KISDIEIASSFF 213 (291)
Q Consensus 141 ~~---~~~Y~aVAVVkK~~~~~S~~~~l~dLkGKksCHtG~~~taGW~iPvg~L~~~~~~c~~~----~~~~~~~~s~FF 213 (291)
.. ...||+||||||+ |.+ +|+||||||+||+|+++++||++|++.|+++|++...+ .. ++++ ++||
T Consensus 84 ~~~~~~~~Y~aVaVVkkd----S~i-sl~dLkGKksChtg~~stsGw~~Pi~~L~~~g~i~~~~~~~~~~-~~a~-s~fF 156 (332)
T 1iej_A 84 HTEGSTTSYYAVAVVKKG----TEF-TVNDLQGKTSCHTGLGRSAGWNIPIGTLLHRGAIEWEGIESGSV-EQAV-AKFF 156 (332)
T ss_dssp CSSSEESEEEEEEEEETT----CCC-CGGGCTTCEEEESCTTCTTTTHHHHHHHHHTTSSCCCCGGGCCH-HHHH-HHHS
T ss_pred CCCCCCCceEEEEEEeCC----CCC-CHHHHCCCceEcCCCCCccchHHHHHHHHHcCCCCccccccchH-HHHH-HHhc
Confidence 52 3489999999999 866 99999999999999999999999999999998543211 11 3567 9999
Q ss_pred cccCCCCCCCCCCCCcCCCC-CCCCCCCCCCccCccccccccccCCCcEEEEechhhhhhh
Q 044324 214 SEVCAPGEFEGTGMCSGCGI-ENGSCHSNSLYFGDSGAFRCLVEELGDIAFVRGDTALLYS 273 (291)
Q Consensus 214 s~SCvPG~~~~~~LC~lC~g-~~~~C~~~e~Y~Gy~GAlrCL~eg~GDVAFVk~~tV~~~~ 273 (291)
++||+||++..++||+||.| +..+|+.+|+||||.||||||+||+||||||+|+||.+++
T Consensus 157 ~~sC~pG~~~~~~LC~lC~g~~~~~C~~~~~y~Gy~GA~rCL~eg~GDVAFvk~~~v~~~~ 217 (332)
T 1iej_A 157 SASCVPGATIEQKLCRQCKGDPKTKCARNAPYSGYSGAFHCLKDGKGDVAFVKHTTVNENA 217 (332)
T ss_dssp SEEECTTCCSCGGGGTTCCSCTTTTTSTTSTTCHHHHHHHHHHTTSCSEEEEETTHHHHHC
T ss_pred cccccCCCCcccchhhhhcCCCcccCCCCcccCCchHHHHHHHhCCCcEEEEeccchhhhc
Confidence 99999999999999999999 4578998899999999999999999999999999999987
No 7
>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2 PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A* 1iq7_A*
Probab=100.00 E-value=3.3e-60 Score=485.93 Aligned_cols=209 Identities=36% Similarity=0.693 Sum_probs=190.0
Q ss_pred CCCceEEEecc-chHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEee
Q 044324 61 SEATIKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVY 139 (291)
Q Consensus 61 ~~~~vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y 139 (291)
+.++|||||+| .|+.||++| +.++ .+.|+||.+.|+++||++|++|+||+++||++++|+|++ ++|+|||+|.|
T Consensus 341 ~~~~vrwCv~s~~E~~KC~~~-~~~~---~~~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~-~gL~Pv~~E~y 415 (686)
T 2d3i_A 341 RENRIQWCAVGKDEKSKCDRW-SVVS---NGDVECTVVDETKDCIIKIMKGEADAVALDGGLVYTAGV-CGLVPVMAERY 415 (686)
T ss_dssp -CCSEEEEEEHHHHHHHHHHH-HHHT---TTSEEEEEESSHHHHHHHHHHTSCCBEEECHHHHHHHHH-TTCEEEEEEEC
T ss_pred CCcceEEeecCchHHHHHHHH-HHhc---CCCeEEEeCCCHHHHHHHHHcCCCCEEEECchHHhhhhc-CCceeeEEEee
Confidence 46899999999 999999999 6664 369999999999999999999999999999999999998 99999999999
Q ss_pred c-C-------CCc-eeEEEEEEecCccccCCCCCcccCCCCcccCCCCCCCCCchhHHHHHHhCCCCCCCCCCchhhhhh
Q 044324 140 C-D-------HAQ-SYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGSTPTFDSGKISDIEIAS 210 (291)
Q Consensus 140 ~-~-------~~~-~Y~aVAVVkK~~~~~S~~~~l~dLkGKksCHtG~~~taGW~iPvg~L~~~~~~c~~~~~~~~~~~s 210 (291)
. . +.. .||+||||||+ +. .+|+||||||+||||+++++||++|+++|++++..| .+ +
T Consensus 416 ~~~~~c~~~~g~~~~Y~aVAVVkk~----s~-~tl~dLkGkksChtg~gstaGw~iP~~~L~~~~~~c--------~~-~ 481 (686)
T 2d3i_A 416 DDESQCSKTDERPASYFAVAVARKD----SN-VNWNNLKGKKSCHTAVGRTAGWVIPMGLIHNRTGTC--------NF-D 481 (686)
T ss_dssp SCGGGC------CCCEEEEEEEESS----SC-CCTTSCTTSEEEESCTTCTTTTHHHHHHHHHHHCCC--------CG-G
T ss_pred cccccccccCCCCceEEEEEEEecC----CC-CCHHHhcCCCcccCCCCCCcchhhHHHHHhhCCCcc--------cH-H
Confidence 7 2 123 79999999998 74 799999999999999999999999999999888667 35 9
Q ss_pred ccccccCCCCCCCCCCCCcCCCCCC----CCCC--CCCCccCccccccccccCCCcEEEEechhhhhhhcCCCCCccccc
Q 044324 211 SFFSEVCAPGEFEGTGMCSGCGIEN----GSCH--SNSLYFGDSGAFRCLVEELGDIAFVRGDTALLYSKEGPQNQSWSS 284 (291)
Q Consensus 211 ~FFs~SCvPG~~~~~~LC~lC~g~~----~~C~--~~e~Y~Gy~GAlrCL~eg~GDVAFVk~~tV~~~~~dg~~~~~Wa~ 284 (291)
+||+.||+||+..+++||+||.|+. ++|. +.|+||||.||||||+|| ||||||||+||.+|+ ||+|+++||+
T Consensus 482 ~fFs~sC~pg~~~~~~lC~lC~g~~~~~~~~C~~~~~e~Y~Gy~GAfrCL~eg-GDVAFvkh~tv~~~~-~g~~~~~wa~ 559 (686)
T 2d3i_A 482 EYFSEGCAPGSPPNSRLCQLCQGSGGIPPEKCVASSHEKYFGYTGALRCLVEK-GDVAFIQHSTVEENT-GGKNKADWAK 559 (686)
T ss_dssp GTSSEEECTTSCTTSGGGTTCCCCSSSSCCTTCSSTTSTTCHHHHHHHHHHHT-CSEEEEETTHHHHTS-TTCCCSTTTT
T ss_pred HhCcccccCCCCCchhhhhhccCCCccccCccCCCCcccccCcchhHHhhccC-CcEEEEechhHHhhc-cCCCcchhhc
Confidence 9999999999999999999999942 5898 789999999999999999 999999999999999 9999999998
Q ss_pred cc-cccc
Q 044324 285 KS-VRDF 290 (291)
Q Consensus 285 ~~-~~~~ 290 (291)
+. .+||
T Consensus 560 ~l~~~d~ 566 (686)
T 2d3i_A 560 NLQMDDF 566 (686)
T ss_dssp TCCGGGE
T ss_pred cCCccce
Confidence 75 4444
No 8
>3v83_A Serotransferrin; iron binding domain, iron carrier/transporter, transferrin R serum, metal transport; HET: P6G; 2.10A {Homo sapiens} PDB: 3v8x_B* 3qyt_A* 4h0w_A* 3ve1_B 2hav_A* 3s9l_C* 3s9m_C* 3s9n_C* 2hau_A* 1jnf_A 1h76_A*
Probab=100.00 E-value=5.1e-60 Score=484.82 Aligned_cols=211 Identities=31% Similarity=0.597 Sum_probs=179.6
Q ss_pred cccccCCCCCceEEEecc-chHHHHHHHHHHhhcCC----CcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeec-c
Q 044324 54 VGDDEEGSEATIKWCAVR-DQYEDCEYLVSIISQSE----DYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAF-L 127 (291)
Q Consensus 54 ~~~~~~~~~~~vRwCv~S-~E~~KC~~l~~~a~~~~----~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~-~ 127 (291)
.++|.+.|+++|||||+| .|++||++| +.++++. .|.|+||++.|+++||++|++|+||+++||++++|+|+ +
T Consensus 14 ~~~~~~~p~~~vrwCv~s~~E~~KC~~l-~~~~~~~~~~~~p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~vy~A~~~ 92 (698)
T 3v83_A 14 LGLCLAVPDKTVRWCAVSEHEATKCQSF-RDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVTLDAGLVYDAYLA 92 (698)
T ss_dssp ---------CEEEEEEEHHHHHHHHHHH-HHHHHTTSCTTSCEEEEEEESSHHHHHHHHHTTSCCBEEECHHHHHHHHST
T ss_pred HHHhccCCCCcEEEeeCCHHHHHHHHHH-HHHHHhhccCCCCceEEEecCCHHHHHHHHHcCCCCEEEEChHHHHhhccC
Confidence 456777788999999999 999999999 6666653 48999999999999999999999999999999999998 6
Q ss_pred cCCcEEEEEEeecCCC---ceeEEEEEEecCccccCCCCCcccCCCCcccCCCCCCCCCchhHHHHHHhCCCCCCCCCCc
Q 044324 128 NFSMKAIANEVYCDHA---QSYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGSTPTFDSGKIS 204 (291)
Q Consensus 128 ~~~L~PIl~E~y~~~~---~~Y~aVAVVkK~~~~~S~~~~l~dLkGKksCHtG~~~taGW~iPvg~L~~~~~~c~~~~~~ 204 (291)
.|+|+||++|.|.++. ..||+||||||+ ++ ++|+||||||+||||+++++||++||++|+.+-..|+. .+
T Consensus 93 ~~~L~Pv~~E~y~~~~~~~~~YyaVAVVkk~----s~-~~l~dLrGKksChtg~g~taGw~iPi~~L~~~~~~~~~-~~- 165 (698)
T 3v83_A 93 PNNLKPVVAEFYGSKEDPQTFYYAVAVVKKD----SG-FQMNQLRGKKSCHTGLGRSAGWNIPIGLLYCDLPEPRK-PL- 165 (698)
T ss_dssp TTCEEEEEEEEEECSSSEESEEEEEEEEESS----CC-CCGGGCTTCCEEESCTTCTTTTHHHHHHHGGGSCSCCC-SH-
T ss_pred cCCcEEEEEEeeccCCCCCcceEEEEEEeCC----CC-CCHHHcCCCCcccCCCCCcccHHHHHHHHeeccCCCCc-hH-
Confidence 8999999999998753 589999999999 85 46999999999999999999999999999643233422 11
Q ss_pred hhhhhhccccccCCCCCCC--CCCCCcCCCCCCCCCCCCCCccCccccccccccCCCcEEEEechhhhhhhcCC
Q 044324 205 DIEIASSFFSEVCAPGEFE--GTGMCSGCGIENGSCHSNSLYFGDSGAFRCLVEELGDIAFVRGDTALLYSKEG 276 (291)
Q Consensus 205 ~~~~~s~FFs~SCvPG~~~--~~~LC~lC~g~~~~C~~~e~Y~Gy~GAlrCL~eg~GDVAFVk~~tV~~~~~dg 276 (291)
++++ ++||++||+||++. ++|||+||.| -.|+++|+||||.||||||+||+||||||||+||++++ ++
T Consensus 166 ~~av-s~FFs~SC~PG~~~~~y~~LC~LC~g--C~~s~~e~Y~Gy~GAfrCL~eg~GDVAFVk~~tV~e~~-~~ 235 (698)
T 3v83_A 166 EKAV-ANFFSGSCAPCADGTDFPQLCQLCPG--CGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTIFENL-AN 235 (698)
T ss_dssp HHHH-HHHSSSEECTTSCTTTCGGGGTTSTT--CCSSTTSTTCHHHHHHHHHHTTSCSEEEEETTHHHHHC-CC
T ss_pred HHHH-HHhhhccccCCCCCCcChhhhhhccC--CCCCCCCcCcCchhHHHhhhcCCCcEEEEEchhhhhhc-cC
Confidence 4577 99999999999987 5899999998 33448999999999999999999999999999999998 55
No 9
>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP: c.94.1.2 c.94.1.2 PDB: 1lfc_A
Probab=100.00 E-value=4e-60 Score=485.84 Aligned_cols=207 Identities=34% Similarity=0.645 Sum_probs=192.3
Q ss_pred CCceEEEecc-chHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEeec
Q 044324 62 EATIKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYC 140 (291)
Q Consensus 62 ~~~vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y~ 140 (291)
+++|||||+| .|++||++| +.++ ++.|+||.+.|+++||++|++|+||+++||++++|+|++ ++|+|||+|.|.
T Consensus 342 ~~~vrwCv~s~~E~~KC~~~-~~~~---~~~i~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~-~gL~Pv~~E~y~ 416 (689)
T 1blf_A 342 YTRVVWCAVGPEEQKKCQQW-SQQS---GQNVTCATASTTDDCIVLVLKGEADALNLDGGYIYTAGK-CGLVPVLAENRK 416 (689)
T ss_dssp HHSEEEEEESHHHHHHHHHH-HHHT---TSSEEEEEESSHHHHHHHHHHTSCCEEEECHHHHHHHHT-TTCEEEEEEECC
T ss_pred CcceEEeecCcHHHHHHHHH-HHhc---CCCeEEEeCCCHHHHHHHHHcCCCCEEEeCcHHHHHHhh-cCCEEEEEeeec
Confidence 5799999999 999999999 7665 369999999999999999999999999999999999998 999999999997
Q ss_pred CC-----------CceeEEEEEEecCccccCCCCCcccCCCCcccCCCCCCCCCchhHHHHHHhCCCCCCCCCCchhhhh
Q 044324 141 DH-----------AQSYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGSTPTFDSGKISDIEIA 209 (291)
Q Consensus 141 ~~-----------~~~Y~aVAVVkK~~~~~S~~~~l~dLkGKksCHtG~~~taGW~iPvg~L~~~~~~c~~~~~~~~~~~ 209 (291)
.. ...||+||||||+ +++.+|+||||||+||||+++++||++|+++|++++..| .+
T Consensus 417 ~~~~~~~~c~~~~~~~Y~aVAVVkk~----s~~~t~~dLkGkksChtg~~~taGw~iP~~~L~~~~~~c--------~~- 483 (689)
T 1blf_A 417 SSKHSSLDCVLRPTEGYLAVAVVKKA----NEGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQTGSC--------AF- 483 (689)
T ss_dssp CSSCSSSCTTTSCCCCEEEEEEEETT----STTCCSGGGTTSEEEESCTTCTTTTHHHHHHHHHHHTCS--------CG-
T ss_pred CccccccccccCCccceEEEEEEEcC----CCcCCHHHHcCCCcccCCCCCCcchhhhHHHHhhCCCCC--------cH-
Confidence 54 1279999999998 778999999999999999999999999999999988767 36
Q ss_pred hccccccCCCCCCCCCCCCcCCCCC---CCCCC--CCCCccCccccccccccCCCcEEEEechhhhhhhcCCCCCccccc
Q 044324 210 SSFFSEVCAPGEFEGTGMCSGCGIE---NGSCH--SNSLYFGDSGAFRCLVEELGDIAFVRGDTALLYSKEGPQNQSWSS 284 (291)
Q Consensus 210 s~FFs~SCvPG~~~~~~LC~lC~g~---~~~C~--~~e~Y~Gy~GAlrCL~eg~GDVAFVk~~tV~~~~~dg~~~~~Wa~ 284 (291)
++||++||+||++.+++||+||.|+ .++|. +.|+||||.||||||+||+||||||+|+||.+|+ +|+|+++||+
T Consensus 484 ~~fFs~sC~PG~~~~~~lC~lC~g~~~~~~~C~~~~~e~Y~Gy~GA~rCL~eg~gDVAFv~~~tv~~~~-~g~~~~~wa~ 562 (689)
T 1blf_A 484 DEFFSQSCAPGADPKSRLCALCAGDDQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVKNDTVWENT-NGESTADWAK 562 (689)
T ss_dssp GGTSSEEECTTSCTTSTTSTTCCCSSSCCSTTCSSTTSTTCHHHHHHHHHHTTSSSEEEEEHHHHHHTS-TTSCCSTTTT
T ss_pred HHhcCCcccCCCCCchhHHHhhcCCCccccccCCCCcccccCchHHHHHHHcCCCcEEEecchhHHHhh-ccCCchhhhh
Confidence 9999999999999999999999983 36898 7899999999999999999999999999999999 9999999998
Q ss_pred ccc
Q 044324 285 KSV 287 (291)
Q Consensus 285 ~~~ 287 (291)
+..
T Consensus 563 ~~~ 565 (689)
T 1blf_A 563 NLN 565 (689)
T ss_dssp TCC
T ss_pred hcc
Confidence 743
No 10
>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin, conformational change; 2.00A {Homo sapiens} SCOP: c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A 1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A 1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A 1i6q_A 1jw1_A ...
Probab=100.00 E-value=6.2e-60 Score=484.23 Aligned_cols=207 Identities=34% Similarity=0.671 Sum_probs=192.2
Q ss_pred CCceEEEecc-chHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEeec
Q 044324 62 EATIKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYC 140 (291)
Q Consensus 62 ~~~vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y~ 140 (291)
+++|||||+| .|++||++| +.++ .+.|+||.+.|+++||++|++|+||+++||++++|+|++ ++|+|||+|.|.
T Consensus 342 ~~~vrwCv~s~~E~~KC~~~-~~~~---~~~i~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~-~gL~Pv~~E~y~ 416 (691)
T 1cb6_A 342 RARVVWCAVGEQELRKCNQW-SGLS---EGSVTCSSASTTEDCIALVLKGEADAMSLDGGYVYTAGK-CGLVPVLAENYK 416 (691)
T ss_dssp HHSEEEEEESHHHHHHHHHH-HHHT---TTSEEEEEESSHHHHHHHHHHTSCCBEEECHHHHHHHHH-TTCEEEEEEEEC
T ss_pred CcceEEeecCcHHHHHHHHH-HHhc---CCCeEEEeCCCHHHHHHHHHcCCCCEEEeCcHHHHHHhh-cCCEEEEeeeec
Confidence 5799999999 999999999 6665 369999999999999999999999999999999999998 999999999997
Q ss_pred C------C-------CceeEEEEEEecCccccCCCCCcccCCCCcccCCCCCCCCCchhHHHHHHhCCCCCCCCCCchhh
Q 044324 141 D------H-------AQSYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGSTPTFDSGKISDIE 207 (291)
Q Consensus 141 ~------~-------~~~Y~aVAVVkK~~~~~S~~~~l~dLkGKksCHtG~~~taGW~iPvg~L~~~~~~c~~~~~~~~~ 207 (291)
. + ...||+||||||+ +++.+|+||||||+||||+++++||++|+++|++++..| .
T Consensus 417 ~~~~~~~~~~c~~~~~~~Y~aVAVVkk~----s~~~t~~dLkGkksChtg~~~taGw~iP~~~L~~~~~~c--------~ 484 (691)
T 1cb6_A 417 SQQSSDPDPNCVDRPVEGYLAVAVVRRS----DTSLTWNSVKGKKSCHTAVDRTAGWNIPMGLLFNQTGSC--------K 484 (691)
T ss_dssp SSSSCCCCTTGGGSCCCCEEEEEEEESS----CTTCCGGGCTTSEEEESCTTCTTTTHHHHHHHHHHHCCC--------C
T ss_pred CccccccccccccCCCcceEEEEEEEcC----CCcCCHHHHCCCCcccCCCCCchHHHHHHHHHHhCCCCC--------c
Confidence 5 3 1279999999999 878999999999999999999999999999999988777 3
Q ss_pred hhhccccccCCCCCCCCCCCCcCCCCC---CCCCC--CCCCccCccccccccccCCCcEEEEechhhhhhhcCCCCCccc
Q 044324 208 IASSFFSEVCAPGEFEGTGMCSGCGIE---NGSCH--SNSLYFGDSGAFRCLVEELGDIAFVRGDTALLYSKEGPQNQSW 282 (291)
Q Consensus 208 ~~s~FFs~SCvPG~~~~~~LC~lC~g~---~~~C~--~~e~Y~Gy~GAlrCL~eg~GDVAFVk~~tV~~~~~dg~~~~~W 282 (291)
+ ++||++||+||++.+++||+||.|+ .++|. +.|+||||.||||||+||+||||||+|+||.+|+ ||+|+++|
T Consensus 485 ~-~~fFs~sC~PG~~~~~~lC~lC~g~~~~~~~C~~~~~e~Y~Gy~GA~rCL~eg~gDVAFvk~~tv~~~~-~g~~~~~w 562 (691)
T 1cb6_A 485 F-DEYFSQSCAPGSDPRSNLCALCIGDEQGENKCVPNSNERYYGYTGAFRCLAENAGDVAFVKDVTVLQNT-DGNNNEAW 562 (691)
T ss_dssp G-GGTSSEEECTTSCTTSGGGTTCCCSTTSCSTTCSSTTSTTCHHHHHHHHHHTTSCSEEEEEHHHHHTTS-TTSSCSHH
T ss_pred H-HHhcCCcccCCCCCchhhHHhhcCCCccccccCCCCcccccCchhHHHHHHcCCCcEEEecchhHHHhh-cCCCchhh
Confidence 5 9999999999999999999999984 36898 7899999999999999999999999999999999 99999999
Q ss_pred ccccc
Q 044324 283 SSKSV 287 (291)
Q Consensus 283 a~~~~ 287 (291)
|++..
T Consensus 563 a~~~~ 567 (691)
T 1cb6_A 563 AKDLK 567 (691)
T ss_dssp HHTCC
T ss_pred hhhcC
Confidence 98743
No 11
>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal transport; 2.15A {Gallus gallus} SCOP: c.94.1.2 c.94.1.2 PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A* 1aov_A* 1iq7_A*
Probab=100.00 E-value=4.1e-59 Score=477.80 Aligned_cols=204 Identities=32% Similarity=0.640 Sum_probs=181.8
Q ss_pred CCCceEEEecc-chHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeec-ccCCcEEEEEEe
Q 044324 61 SEATIKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAF-LNFSMKAIANEV 138 (291)
Q Consensus 61 ~~~~vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~-~~~~L~PIl~E~ 138 (291)
+.++|||||+| .|++||++| +.++...+|.|+||.+.|+++||++|++|+||+++||++++|+|+ +.|+|+||++|.
T Consensus 3 ~~~~vrwCv~s~~E~~KC~~l-~~~~~~~~p~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~~L~pi~~E~ 81 (686)
T 2d3i_A 3 PKSVIRWCTISSPEEKKCNNL-RDLTQQERISLTCVQKATYLDCIKAIANNEADAISLDGGQVFEAGLAPYKLKPIAAEV 81 (686)
T ss_dssp --CEEEEEESSHHHHHHHHHH-HHHTTTSSSEEEEEECSSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTCCEEEEEEE
T ss_pred CCCcEEEEECCHHHHHHHHHH-HHHHhhcCCceEEEeCCCHHHHHHHHHcCCCCEEEeCccceEEeccccCCCEEEEEEe
Confidence 55789999999 999999999 666633359999999999999999999999999999999999998 689999999999
Q ss_pred ecCC---CceeEEEEEEecCccccCCCCCcccCCCCcccCCCCCCCCCchhHHHHHHhCCCC----CCCCCCchhhhhhc
Q 044324 139 YCDH---AQSYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGSTPT----FDSGKISDIEIASS 211 (291)
Q Consensus 139 y~~~---~~~Y~aVAVVkK~~~~~S~~~~l~dLkGKksCHtG~~~taGW~iPvg~L~~~~~~----c~~~~~~~~~~~s~ 211 (291)
|... ...||+||||||+ +. ++|+||||||+||||+++++||++||++|++++++ |+.... ++++ ++
T Consensus 82 y~~~~~~~~~Y~aVAVVkk~----s~-~tl~dLkGKksCHtg~g~taGw~iPi~~L~~~g~i~~~~~~~~~~-~~a~-s~ 154 (686)
T 2d3i_A 82 YEHTEGSTTSYYAVAVVKKG----TE-FTVNDLQGKTSCHTGLGRSAGWNIPIGTLIHRGAIEWEGIESGSV-EQAV-AK 154 (686)
T ss_dssp BCCTTCCBSEEEEEEEEETT----CC-CCGGGCTTCEEEESCTTCTTTTHHHHHHHHHTTSSCCCSGGGCCH-HHHH-HH
T ss_pred ecCCCCCCCceEEEEEEECC----CC-CCHHHhCCCccccCCCCCccchHHHHHHHHHcCCccccccccccH-HHHH-HH
Confidence 9763 3589999999999 75 59999999999999999999999999999999853 321111 4577 99
Q ss_pred cccccCCCCCCCCCCCCcCCCCCCCCC--CCCCCccCccccccccccCCCcEEEEechhhhhhh
Q 044324 212 FFSEVCAPGEFEGTGMCSGCGIENGSC--HSNSLYFGDSGAFRCLVEELGDIAFVRGDTALLYS 273 (291)
Q Consensus 212 FFs~SCvPG~~~~~~LC~lC~g~~~~C--~~~e~Y~Gy~GAlrCL~eg~GDVAFVk~~tV~~~~ 273 (291)
||++||+||++..+|||+||.|+ .+| +++|+||||.||||||+||+||||||||+||.+++
T Consensus 155 FFs~SC~PG~~~~~~LC~lC~g~-~~C~~~~~e~Y~Gy~GAfrCL~eg~GDVAFvkh~tv~~~~ 217 (686)
T 2d3i_A 155 FFSASCVPGATIEQKLCRQCKGD-PKTKCARNAPYSGYSGAFHCLKDGKGDVAFVKHTTVNENA 217 (686)
T ss_dssp HSSEEECTTCCSCGGGTTTCCSC-TTTTTSTTSTTCHHHHHHHHHHTTSCSEEEEETTHHHHHC
T ss_pred hcCCcccCCCCCccchhhhcCCC-CCcCCCCcccCcCcHHHHHHHHhcCCcEEEEecceecccc
Confidence 99999999999999999999996 477 47899999999999999999999999999999877
No 12
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A 1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C* 1z6v_A 1z6w_A
Probab=100.00 E-value=6e-59 Score=442.49 Aligned_cols=203 Identities=30% Similarity=0.591 Sum_probs=179.5
Q ss_pred CCCceEEEecc-chHHHHHHHHHHhhcCC-CcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeec-ccCCcEEEEEE
Q 044324 61 SEATIKWCAVR-DQYEDCEYLVSIISQSE-DYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAF-LNFSMKAIANE 137 (291)
Q Consensus 61 ~~~~vRwCv~S-~E~~KC~~l~~~a~~~~-~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~-~~~~L~PIl~E 137 (291)
|.++|||||+| .|++||++| +.++... ++.|+|+.++|+.+||++|++|+||+++||++++|+|+ +.++|+||++|
T Consensus 3 ~~~~vrwCv~s~~e~~KC~~l-~~~~~~~~~~~vecv~~~~~~~ci~aI~~g~AD~~~ld~~~~~~A~~~~~~l~pi~~e 81 (334)
T 1h45_A 3 RRRSVQWCAVSQPEATKCFQW-QRNMRRVRGPPVSCIKRDSPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRPVAAE 81 (334)
T ss_dssp CTTSEEEEESSHHHHHHHHHH-HHHHHHTTCCCEEEEECSSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTCEEEEEEE
T ss_pred CCCcEEEEECCHHHHHHHHHH-HHHHhhcCCCceEEEEcCCHHHHHHHHHcCCCCEEEeCccceEEeecCccCCEEEEEE
Confidence 45789999999 999999999 6555443 58999999999999999999999999999999999998 57999999999
Q ss_pred eecCC---CceeEEEEEEecCccccCCCCCcccCCCCcccCCCCCCCCCchhHHHHHHhCCC---CCCCCCCchhhhhhc
Q 044324 138 VYCDH---AQSYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGSTP---TFDSGKISDIEIASS 211 (291)
Q Consensus 138 ~y~~~---~~~Y~aVAVVkK~~~~~S~~~~l~dLkGKksCHtG~~~taGW~iPvg~L~~~~~---~c~~~~~~~~~~~s~ 211 (291)
.|..+ ...||+||||||+ +++ +|+||||||+||+|+++++||++|++.|+ ..+ .|+. .+ ++++ ++
T Consensus 82 ~~~~~~~~~~~Y~avaVVkk~----s~i-sl~dLkGKksch~~~~stsGw~iP~~~L~-~~i~~~~~~~-~~-~~a~-~~ 152 (334)
T 1h45_A 82 VYGTERQPRTHYYAVAVVKKG----GSF-QLNELQGLKSCHTGLRRTAGWNVPIGTLR-PFLDWTGPPE-PI-EAAV-AR 152 (334)
T ss_dssp EEECSSSEESEEEEEEEEETT----CCC-CGGGCTTCEEEESCTTCTTTTHHHHHHHG-GGSCCCCTTS-CH-HHHH-HH
T ss_pred eecCCCCCCCceEEEEEEeCC----CCC-CHHHHCCCceecCCCCCccchhHHHHHHH-hhcCcCCCcc-hh-hHHH-HH
Confidence 99763 3489999999999 865 99999999999999999999999999998 332 2322 11 4577 99
Q ss_pred cccccCCCCCCC--CCCCCcCCCCC-CCCCC--CCCCccCccccccccccCCCcEEEEechhhhhhh
Q 044324 212 FFSEVCAPGEFE--GTGMCSGCGIE-NGSCH--SNSLYFGDSGAFRCLVEELGDIAFVRGDTALLYS 273 (291)
Q Consensus 212 FFs~SCvPG~~~--~~~LC~lC~g~-~~~C~--~~e~Y~Gy~GAlrCL~eg~GDVAFVk~~tV~~~~ 273 (291)
||++||+||++. |+|||+||.|+ ..+|. +.|+||||.||||||+||+||||||+|+||.+++
T Consensus 153 fFs~sC~pg~~~~~y~~LC~lC~g~~~~~C~~s~~~~y~G~~GA~rCL~eg~gDVAFv~~~~v~~~~ 219 (334)
T 1h45_A 153 FFSASCVPGADKGQFPNLCRLCAGTGENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIGESTVFEDL 219 (334)
T ss_dssp HSSEEECTTSCTTTCGGGTTTCCCCGGGTTCSSTTSTTCHHHHHHHHHHTTSCSEEEEETTHHHHHC
T ss_pred hccccccCCCCccchhhHHHhcCCCCCCccCCCCCccccCchHHHHHHHhCCCcEEEEecchhhhhh
Confidence 999999999987 58999999993 46895 7899999999999999999999999999999876
No 13
>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin, conformational change; 2.00A {Homo sapiens} SCOP: c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A 1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A 1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A 1i6q_A 1jw1_A ...
Probab=100.00 E-value=3.6e-59 Score=478.57 Aligned_cols=204 Identities=29% Similarity=0.596 Sum_probs=180.9
Q ss_pred CceEEEecc-chHHHHHHHHHHhhcCC-CcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeec-ccCCcEEEEEEee
Q 044324 63 ATIKWCAVR-DQYEDCEYLVSIISQSE-DYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAF-LNFSMKAIANEVY 139 (291)
Q Consensus 63 ~~vRwCv~S-~E~~KC~~l~~~a~~~~-~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~-~~~~L~PIl~E~y 139 (291)
.+|||||+| .|++||++| +.++.+. +|.|+||++.|+++||++|++|+||+++||++++|+|+ +.|+|+||++|.|
T Consensus 4 ~~vrwCv~s~~E~~KC~~l-~~~~~~~~~~~i~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~vy~A~~~~~~L~pi~~E~y 82 (691)
T 1cb6_A 4 RSVQWCAVSQPEATKCFQW-QRNMRKVRGPPVSCIKRDSPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRPVAAEVY 82 (691)
T ss_dssp SSEEEEESSHHHHHHHHHH-HHHHHHTTCCCEEEEECSSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTCEEEEEEEEE
T ss_pred CeEEEEEcCHHHHHHHHHH-HHHHhhccCCceEEEeCCCHHHHHHHHhcCCCCEEEEChHHhheeccccCCCEEEEEEee
Confidence 579999999 999999999 6555433 48999999999999999999999999999999999998 6899999999999
Q ss_pred cCC---CceeEEEEEEecCccccCCCCCcccCCCCcccCCCCCCCCCchhHHHHHHhCCCC---CCCCCCchhhhhhccc
Q 044324 140 CDH---AQSYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGSTPT---FDSGKISDIEIASSFF 213 (291)
Q Consensus 140 ~~~---~~~Y~aVAVVkK~~~~~S~~~~l~dLkGKksCHtG~~~taGW~iPvg~L~~~~~~---c~~~~~~~~~~~s~FF 213 (291)
... ...||+||||||+ +. ++|+||||||+||||+++++||++||++|+++ +. |+. . .++++ ++||
T Consensus 83 ~~~~~~~~~Y~aVAVVkk~----s~-~~l~dLkGkksCHtg~g~taGw~iPi~~L~~~-i~~~~~~~-~-~~~a~-s~FF 153 (691)
T 1cb6_A 83 GTERQPRTHYYAVAVVKKG----GS-FQLNELQGLKSCHTGLRRTAGWNVPIGTLRPF-LNWTGPPE-P-IEAAV-ARFF 153 (691)
T ss_dssp EETTEEESEEEEEEEEETT----CC-CCGGGCTTCEEEESCTTCTTTTHHHHHHSGGG-SCCCCTTS-C-HHHHH-HHHS
T ss_pred cCCCCCCCceEEEEEEECC----CC-CCHHHhCCCCcccCCCCCccchhhHHHHHHHh-ccccCCcc-h-HHHHH-HHhc
Confidence 763 3489999999999 75 59999999999999999999999999999876 32 322 1 14678 9999
Q ss_pred cccCCCCCCC--CCCCCcCCCCC-CCCCC--CCCCccCccccccccccCCCcEEEEechhhhhhhcCCC
Q 044324 214 SEVCAPGEFE--GTGMCSGCGIE-NGSCH--SNSLYFGDSGAFRCLVEELGDIAFVRGDTALLYSKEGP 277 (291)
Q Consensus 214 s~SCvPG~~~--~~~LC~lC~g~-~~~C~--~~e~Y~Gy~GAlrCL~eg~GDVAFVk~~tV~~~~~dg~ 277 (291)
++||+||++. |+|||+||.|+ ..+|+ ++|+||||.||||||+||+||||||||+||.+++ .+.
T Consensus 154 s~SC~PG~~~~~y~~LC~lC~g~~~~~C~~~~~e~Y~Gy~GAfrCL~eg~GDVAFvkh~tv~~~~-~~~ 221 (691)
T 1cb6_A 154 SASCVPGADKGQFPNLCRLCAGTGENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDL-SDE 221 (691)
T ss_dssp SEEECTTCCTTTCGGGGTTCCCCGGGTTCSSTTSTTCHHHHHHHHHHTTSCSEEEEETHHHHHHC-CST
T ss_pred CcccCCCCCcccchhhhHhhcCCCcCccCCCCcccCcCcHHHHHHHHhcCCcEEEEecceecccc-ccc
Confidence 9999999987 58999999993 56895 7899999999999999999999999999999988 543
No 14
>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP: c.94.1.2 c.94.1.2 PDB: 1lfc_A
Probab=100.00 E-value=1.5e-57 Score=466.82 Aligned_cols=205 Identities=27% Similarity=0.541 Sum_probs=180.0
Q ss_pred CCCceEEEecc-chHHHHHHHHHHhhcCC-CcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeec-ccCCcEEEEEE
Q 044324 61 SEATIKWCAVR-DQYEDCEYLVSIISQSE-DYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAF-LNFSMKAIANE 137 (291)
Q Consensus 61 ~~~~vRwCv~S-~E~~KC~~l~~~a~~~~-~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~-~~~~L~PIl~E 137 (291)
|.++|||||+| .|++||++| +.++... ++.|+||.++|+++||++|++|+||+++||++++|+|+ +.|+|+||++|
T Consensus 2 ~~~~vrwCv~s~~e~~KC~~l-~~~~~~~~~~~v~Cv~~~s~~~Ci~~I~~g~AD~~~ld~~~~y~A~~~~~~l~pv~aE 80 (689)
T 1blf_A 2 PRKNVRWCTISQPEWFKCRRW-QWRMKKLGAPSITCVRRAFALECIRAIAEKKADAVTLDGGMVFEAGRDPYKLRPVAAE 80 (689)
T ss_dssp ---CEEEEESSHHHHHHHHHH-HHHHGGGCSCCEEEEECSSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTCEEEEEEE
T ss_pred CCCcEEEEEcCHHHHHHHHHH-HHHHHhcCCCceEEEEcCCHHHHHHHHHcCCCCEEEEChhHeEEeccccCCCEEEEEE
Confidence 45689999999 999999999 6665443 58999999999999999999999999999999999998 78999999999
Q ss_pred eecCC---CceeEEEEEEecCccccCCCCCcccCCCCcccCCCCCCCCCchhHHHHHHhCCC---CCCCCCCchhhhhhc
Q 044324 138 VYCDH---AQSYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGSTP---TFDSGKISDIEIASS 211 (291)
Q Consensus 138 ~y~~~---~~~Y~aVAVVkK~~~~~S~~~~l~dLkGKksCHtG~~~taGW~iPvg~L~~~~~---~c~~~~~~~~~~~s~ 211 (291)
.|... ...||+||||||+ +.+ +|+||||||+||||+++++||++||++|+++ + .|++ . .++++ ++
T Consensus 81 ~y~~~~~~~~~Y~aVAVVkk~----s~~-tl~dLkGKksChtg~~~taGw~iPi~~L~~~-i~~~~~~~-~-~~~a~-s~ 151 (689)
T 1blf_A 81 IYGTKESPQTHYYAVAVVKKG----SNF-QLDQLQGRKSCHTGLGRSAGWIIPMGILRPY-LSWTESLE-P-LQGAV-AK 151 (689)
T ss_dssp EEECSSSEESEEEEEEEEESS----CCC-CSTTCTTCCEEESCTTCTTTTHHHHHHHHHH-HTCCTTTS-C-HHHHH-HT
T ss_pred eecCCCCCCcceEEEEEEeCC----CCC-CHHHhCCCceecCCCCCccchHHHHHHHHHh-cCccCCcc-h-HHHHH-HH
Confidence 99763 2489999999999 855 8999999999999999999999999999765 2 2322 1 14678 99
Q ss_pred cccccCCCCCCC--CCCCCcCCCC-CCCCCC--CCCCccCccccccccccCCCcEEEEechhhhhhhcCC
Q 044324 212 FFSEVCAPGEFE--GTGMCSGCGI-ENGSCH--SNSLYFGDSGAFRCLVEELGDIAFVRGDTALLYSKEG 276 (291)
Q Consensus 212 FFs~SCvPG~~~--~~~LC~lC~g-~~~~C~--~~e~Y~Gy~GAlrCL~eg~GDVAFVk~~tV~~~~~dg 276 (291)
||++||+||++. ++|||+||.| +..+|. +.|+||||.||||||+||+||||||+|+||.+++ ++
T Consensus 152 fFs~SC~PG~~~~~y~~LC~lC~g~~~~~C~~~~~e~Y~Gy~GA~rCL~eg~GDVAFvk~~tv~~~~-~~ 220 (689)
T 1blf_A 152 FFSASCVPCIDRQAYPNLCQLCKGEGENQCACSSREPYFGYSGAFKCLQDGAGDVAFVKETTVFENL-PE 220 (689)
T ss_dssp TSSSEECTTSCTTTCGGGSTTCCCCTTSTTCSSTTSTTCHHHHHHHHHHTTSCSEEEEETTHHHHHC-CS
T ss_pred hcCccccCCCCcccchhhhHhccCCCcCccCCCCCccccCchHHHHHHHHcCCcEEEEeccccchhh-cc
Confidence 999999999987 6899999999 357895 7899999999999999999999999999999977 44
No 15
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ...
Probab=100.00 E-value=1.2e-56 Score=425.70 Aligned_cols=200 Identities=32% Similarity=0.626 Sum_probs=177.4
Q ss_pred CCCceEEEecc-chHHHHHHHHHHhhcC-C---CcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeec-ccCCcEEE
Q 044324 61 SEATIKWCAVR-DQYEDCEYLVSIISQS-E---DYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAF-LNFSMKAI 134 (291)
Q Consensus 61 ~~~~vRwCv~S-~E~~KC~~l~~~a~~~-~---~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~-~~~~L~PI 134 (291)
|+++|||||+| .|++||++| +.++.+ . ++.|+|+.++|+.+||++|++|+||+++|+++++|+|+ +.++|+||
T Consensus 2 p~~~vrwCv~s~~e~~KC~~l-~~~~~~~~~~~~~~vecv~~~dy~~ci~ai~~g~aD~~~l~~~~~~~A~~~~~~l~pi 80 (327)
T 1ryo_A 2 PDKTVRWCAVSEHEATKCQSF-RDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVTLDAGLVYDAYLAPNNLKPV 80 (327)
T ss_dssp --CEEEEEEEHHHHHHHHHHH-HHHHHHHSCTTSCEEEEEEESSHHHHHHHHHTTSCCBEEECHHHHHHHHSTTTCCEEE
T ss_pred CCCCEEEEECCHHHHHHHHHH-HHHHhhccccCCCceEEEecCCHHHHHHHHHcCCCcEEEeCccceeEEecccCCCEEE
Confidence 55789999999 999999999 655533 2 47999999999999999999999999999999999999 78999999
Q ss_pred EEEeecCC---CceeEEEEEEecCccccCCCCCcccCCCCcccCCCCCCCCCchhHHHHHHhCCCCCCCCCCchhhhhhc
Q 044324 135 ANEVYCDH---AQSYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGSTPTFDSGKISDIEIASS 211 (291)
Q Consensus 135 l~E~y~~~---~~~Y~aVAVVkK~~~~~S~~~~l~dLkGKksCHtG~~~taGW~iPvg~L~~~~~~c~~~~~~~~~~~s~ 211 (291)
++|.|... ...||+||||||+ |++ +|+||||||+||+|+++++||++|++.|+++...|+. .+ .+++ ++
T Consensus 81 ~ae~~~~~~~~~~~Y~sVaVVkkd----S~i-sl~dLkGKk~ch~~~~stsG~~iP~~~L~~~~~~~~~-~~-~~~~-~~ 152 (327)
T 1ryo_A 81 VAEFYGSKEDPQTFYYAVAVVKKD----SGF-QMNQLRGKKSCHTGLGRSAGWNIPIGLLYCDLPEPRK-PL-EKAV-AN 152 (327)
T ss_dssp EEEEEECSSSEESEEEEEEEEETT----CCC-CGGGCTTCCEEESCTTCTTTTHHHHHHHGGGSCSCCC-SH-HHHH-HH
T ss_pred EEEEecCCCCCCCceEEEEEEeCC----CCC-ChHHhCCCceEcCCCCCcchhhhHHHHHHhhcccccc-cc-hhhH-HH
Confidence 99999762 3489999999999 866 9999999999999999999999999999988555533 22 4567 99
Q ss_pred cccccCCCCCCC--CCCCCcCCCCCCCCCC--CCCCccCccccccccccCCCcEEEEechhhhhhh
Q 044324 212 FFSEVCAPGEFE--GTGMCSGCGIENGSCH--SNSLYFGDSGAFRCLVEELGDIAFVRGDTALLYS 273 (291)
Q Consensus 212 FFs~SCvPG~~~--~~~LC~lC~g~~~~C~--~~e~Y~Gy~GAlrCL~eg~GDVAFVk~~tV~~~~ 273 (291)
||++||+||+.. ++|||+||.| |. +.|+|+||.||||||+||+||||||+|++|.++.
T Consensus 153 fF~~sC~pg~~~~~y~~LC~lC~g----C~~~~~~~y~G~~gA~rcL~eG~gDVAfv~~~~v~~~~ 214 (327)
T 1ryo_A 153 FFSGSCAPCADGTDFPQLCQLCPG----CGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTIFENL 214 (327)
T ss_dssp HSSSEECTTSCTTTCGGGGTTSTT----CCSSTTSTTCHHHHHHHHHHTTSCSEEEEETTHHHHHC
T ss_pred hccccccCCccccccchhhhhccc----CCCCCCCCccCcHHHHHHHHcCCccEEEEeccchhhhh
Confidence 999999999987 4899999998 85 7889999999999999999999999999998765
No 16
>2j4u_S Lactotransferrin, lactoferrin; membrane protein/hydrolase, membrane protein/hydrolase complex, iron, OMPC, porin, complex, protease; 2.99A {Camelus dromedarius}
Probab=98.92 E-value=1.3e-11 Score=84.93 Aligned_cols=42 Identities=21% Similarity=0.561 Sum_probs=36.4
Q ss_pred CCCceEEEecc-chHHHHHHHHHHhhcCC-CcceEEEecCCHHHH
Q 044324 61 SEATIKWCAVR-DQYEDCEYLVSIISQSE-DYTWKCVKRDTAQEC 103 (291)
Q Consensus 61 ~~~~vRwCv~S-~E~~KC~~l~~~a~~~~-~p~l~CV~~~s~~dC 103 (291)
|.++|||||+| .|+.||++| +.++.+. .|.|+||++.|.+||
T Consensus 2 p~~~vrWCt~S~~E~~KC~~l-~~~~~~~~~P~l~Cv~~~s~~eC 45 (45)
T 2j4u_S 2 SKKSVRWCTTSPAESKKCAQW-QRRMKKVRGPSVTCVKKTSRFEC 45 (45)
T ss_dssp CSSSBCCCCCSSGGGSSCCST-TBTTBSSCCSCBCCCCCSSSSCC
T ss_pred CCCCEEEEECCHHHHHHHHHH-HHHHHhcCCCCeEEeCCCCcCCC
Confidence 56789999999 999999999 6666554 499999999999887
No 17
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=98.34 E-value=5.8e-07 Score=83.61 Aligned_cols=170 Identities=14% Similarity=0.100 Sum_probs=118.7
Q ss_pred CCCceEEEecc-chHHH----HHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEE
Q 044324 61 SEATIKWCAVR-DQYED----CEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIA 135 (291)
Q Consensus 61 ~~~~vRwCv~S-~E~~K----C~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl 135 (291)
.+.++|+=++. ..... =+.|........+.+++-+...+..+.++++..|++|++.+.+..+..+...+++++++
T Consensus 12 ~~~~l~~Gv~p~~~~~~~~~~~~~l~~~L~k~lG~~ve~~~~~~~~~~i~aL~~G~vDia~~~~~~~~~~~~~~~~~~~a 91 (321)
T 3p7i_A 12 QEKALNFGIISTESQQNLKPQWTPFLQDMEKKLGVKVNAFFAPDYAGIIQGMRFNKVDIAWYGNLSAMEAVDRANGQVFA 91 (321)
T ss_dssp --CCEEEEECCSSCHHHHHHHHHHHHHHHHHHHTSCEEEECCSSHHHHHHHHHTTSCSEEECCHHHHHHHHHHSCEEEEE
T ss_pred cCCcEEEEEecCCCHHHHHHHHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHcCCCcEEEEChHHHHHHHHhcCCEEEE
Confidence 34588888887 32211 11221111111246788888889999999999999999998876655554446778777
Q ss_pred EEeecCCCceeEEEEEEecCccccCCCCCcccC----CCCcccCCCCCCCCCchhHHHHH-HhCCCCCCCCCCchhhhhh
Q 044324 136 NEVYCDHAQSYDAVAVINRKVCQENGGINLMDF----KGHKSCHGSYSTAAGWNYPVNHI-KGSTPTFDSGKISDIEIAS 210 (291)
Q Consensus 136 ~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dL----kGKksCHtG~~~taGW~iPvg~L-~~~~~~c~~~~~~~~~~~s 210 (291)
.-...++...|+++.||+++ +++.+++|| |||+......++++|+.++...| .+.|+.. .
T Consensus 92 ~~~~~~g~~~y~~~lvv~~d----s~i~sl~DL~~~~kgk~va~~~~gsts~~l~~~~~l~~~~Gi~~-----------~ 156 (321)
T 3p7i_A 92 QTVAADGSPGYWSVLIVNKD----SPINNLNDLLAKRKDLTFGNGDPNSTSGFLVPGYYVFAKNNISA-----------S 156 (321)
T ss_dssp EEEETTCCSSBCEEEEEETT----CSCCSHHHHHHTGGGCEEEECCTTCTTTTHHHHHHTTGGGTCCG-----------G
T ss_pred EEeccCCCcceEEEEEEECC----CCCCCHHHHHhhcCCCEEEeCCCCccHHHHHHHHHHHHHcCCCh-----------h
Confidence 65543444567889999999 889999999 99999887888889999998865 4455422 1
Q ss_pred ccccccCCCCCCCCCCCCcCCCCCCCCCCCCCCccC-ccccccccccCCCcEEEEechhhhhhh
Q 044324 211 SFFSEVCAPGEFEGTGMCSGCGIENGSCHSNSLYFG-DSGAFRCLVEELGDIAFVRGDTALLYS 273 (291)
Q Consensus 211 ~FFs~SCvPG~~~~~~LC~lC~g~~~~C~~~e~Y~G-y~GAlrCL~eg~GDVAFVk~~tV~~~~ 273 (291)
+ |. ..|+| ...++.-|..|.-|++|+...++..+.
T Consensus 157 ~-~~---------------------------~v~~~~~~~a~~al~~G~vDa~~~~~~~~~~~~ 192 (321)
T 3p7i_A 157 D-FK---------------------------RTVNAGHETNALAVANKQVDVATNNTENLDKLK 192 (321)
T ss_dssp G-SS---------------------------EEEECCHHHHHHHHHTTSSSEEEEEHHHHHTHH
T ss_pred H-ce---------------------------eeecCCHHHHHHHHHCCCceEEEechHHHHHHH
Confidence 1 21 11333 556888999999999999987766554
No 18
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=98.27 E-value=1.5e-06 Score=80.03 Aligned_cols=143 Identities=15% Similarity=0.076 Sum_probs=107.1
Q ss_pred CcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEeecCCCceeEEEEEEecCccccCCCCCcccC
Q 044324 89 DYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMDF 168 (291)
Q Consensus 89 ~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dL 168 (291)
+.+++=+...+..+-++++..|++|++.+.+.....+...++++++..-...++...|..+.||+++ +++.+++||
T Consensus 35 G~~ve~~~~~~~~~~i~al~~G~vDi~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~lvv~~d----s~i~sl~DL 110 (310)
T 3n5l_A 35 GYQVKAFFAPDYAGIIQGMRFDKVDIAWYGNKAAMEAVDRAHGEIFAQTVAASGAPGYWSLLIANKD----SKIDSLEDM 110 (310)
T ss_dssp SSEEEEECCSSHHHHHHHHHTTSCSEEECCHHHHHHHHHHSCEEEEEEEEETTCCSEEEEEEEEETT----CSCCSHHHH
T ss_pred CCCEEEEeCCCHHHHHHHHHcCCCCEEEECcHHHHHHHHhcCCeEEEEEeccCCCcceEEEEEEECC----CCCCCHHHH
Confidence 4577777788999999999999999999887665555444677777654433344477889999999 889999999
Q ss_pred ----CCCcccCCCCCCCCCchhHHHHH-HhCCCCCCCCCCchhhhhhccccccCCCCCCCCCCCCcCCCCCCCCCCCCCC
Q 044324 169 ----KGHKSCHGSYSTAAGWNYPVNHI-KGSTPTFDSGKISDIEIASSFFSEVCAPGEFEGTGMCSGCGIENGSCHSNSL 243 (291)
Q Consensus 169 ----kGKksCHtG~~~taGW~iPvg~L-~~~~~~c~~~~~~~~~~~s~FFs~SCvPG~~~~~~LC~lC~g~~~~C~~~e~ 243 (291)
|||+......++++|+.++...| .+.|+. . .+||. ..
T Consensus 111 ~~~~kgk~ia~~~~gs~~~~l~~~~~l~~~~Gi~----------~-~~~~~---------------------------~v 152 (310)
T 3n5l_A 111 LANAKSLTFGNGDPNSTSGYLVPGYYVFAKNNVD----------P-VKAFK---------------------------RT 152 (310)
T ss_dssp HHTGGGCEEEECCTTCTTTTHHHHHHTTTTTTCC----------H-HHHSS---------------------------EE
T ss_pred hhhcCCCEEEecCCCccHhHHHHHHHHHHHcCCC----------h-HHhcc---------------------------cc
Confidence 99999988888888999888655 344431 1 33342 11
Q ss_pred ccCc-cccccccccCCCcEEEEechhhhhhh
Q 044324 244 YFGD-SGAFRCLVEELGDIAFVRGDTALLYS 273 (291)
Q Consensus 244 Y~Gy-~GAlrCL~eg~GDVAFVk~~tV~~~~ 273 (291)
|.|. ..++.=|..|.-|++|+...++..+.
T Consensus 153 ~~g~~~~~~~al~~G~vDa~~~~~~~~~~~~ 183 (310)
T 3n5l_A 153 LNSSHEVNALAVANKQVDVATFNTEGMERLE 183 (310)
T ss_dssp EECCHHHHHHHHHTTSSSEEEEEHHHHHHHH
T ss_pred ccCCHHHHHHHHHcCCccEEEecchhHHHHH
Confidence 4444 35788899999999999988877665
No 19
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=97.03 E-value=0.0021 Score=58.01 Aligned_cols=99 Identities=11% Similarity=0.042 Sum_probs=66.8
Q ss_pred CcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeec-ccCCcEEEEEEeecCCCceeEEEEEEecCccccCCCCCccc
Q 044324 89 DYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAF-LNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMD 167 (291)
Q Consensus 89 ~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~-~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~d 167 (291)
+.+++-+...+..+.++++..|++|++.+....+..+. +...++.+..-.+.. . ..+.||+++ +++.+++|
T Consensus 57 g~~v~~~~~~~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~---~-~~~lvv~~~----s~I~s~~D 128 (324)
T 3ksx_A 57 RTKITWVEFPAGPQLLEALNVGSIDLGGAGDIPPLFAQAAGADLLYVGWVPPTP---K-AETILVPSK----SALRTVAD 128 (324)
T ss_dssp TSEEEEEEESSHHHHHHHHHTTSCSEEEEESHHHHHHHHTTCCEEEEEEECCCG---G-GEEEEEETT----CSCCSGGG
T ss_pred CCceEEEECCCHHHHHHHHHCCCCCEEeecCHHHHHHHhcCCCEEEEEEecCCC---C-ceEEEEeCC----CCCCCHHH
Confidence 34677777778889999999999999987665443332 334566555433221 1 235567888 88999999
Q ss_pred CCCCcccCCCCCCCCCchhHHHHHHhCCCC
Q 044324 168 FKGHKSCHGSYSTAAGWNYPVNHIKGSTPT 197 (291)
Q Consensus 168 LkGKksCHtG~~~taGW~iPvg~L~~~~~~ 197 (291)
|||||...+ .+++ +..+-...|.+.|+.
T Consensus 129 LkGk~i~v~-~gs~-~~~~~~~~l~~~Gl~ 156 (324)
T 3ksx_A 129 LKGKRIAFQ-KGSS-AHNLLLRVLAKSGLS 156 (324)
T ss_dssp GTTCEEEEC-TTSH-HHHHHHHHHHHTTCC
T ss_pred hCCCEEEec-CCCh-HHHHHHHHHHHcCCC
Confidence 999999886 4443 344444566666653
No 20
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=96.88 E-value=0.0014 Score=58.35 Aligned_cols=98 Identities=7% Similarity=-0.071 Sum_probs=67.1
Q ss_pred CcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeec-ccCCcEEEEEEeecCCCceeEEEEEEecCccccCCCCCccc
Q 044324 89 DYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAF-LNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMD 167 (291)
Q Consensus 89 ~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~-~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~d 167 (291)
+..++-+...+..+-++++..|++|++......++.+. +...++.|.. .+... ..+.||+++ +++.+++|
T Consensus 33 Gl~v~~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~----~~~l~~~~~----s~i~s~~D 103 (302)
T 3ix1_A 33 GLDVDIVFPTNPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVAS-VVRSP----LNHVMFLAE----QDFDSPAD 103 (302)
T ss_dssp TEEEEEECCSSTTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEE-EECSC----CEEEEEEGG----GCCSSGGG
T ss_pred CCcEEEecCCCCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEE-EeccC----CEEEEEECC----CCCCChHH
Confidence 45677777777779999999999999998866655544 3344554433 23221 245677888 78999999
Q ss_pred CCCCcccCCCCCCCCCchhHHHHHHhCCCC
Q 044324 168 FKGHKSCHGSYSTAAGWNYPVNHIKGSTPT 197 (291)
Q Consensus 168 LkGKksCHtG~~~taGW~iPvg~L~~~~~~ 197 (291)
|||||...++.+ ++..+....|.+.|+.
T Consensus 104 L~Gk~i~~~~~~--~~~~~~~~~l~~~Gl~ 131 (302)
T 3ix1_A 104 LVGLTVGYPGIP--VNEPILKTMVEAAGGD 131 (302)
T ss_dssp GTTSEEEECSCT--THHHHHHHHHHHTTCC
T ss_pred cCCCEEEeCCCc--chHHHHHHHHHHcCCC
Confidence 999999876643 3445545556566653
No 21
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=96.43 E-value=0.0058 Score=54.55 Aligned_cols=98 Identities=13% Similarity=-0.015 Sum_probs=67.5
Q ss_pred CcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeec-ccCCcEEEEEEeecCCCceeEEEEEEecCccccC--CCCCc
Q 044324 89 DYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAF-LNFSMKAIANEVYCDHAQSYDAVAVINRKVCQEN--GGINL 165 (291)
Q Consensus 89 ~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~-~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S--~~~~l 165 (291)
+..++-+...+..+.++++..|++|++.........+. +...++.+.. .+.. ...+.||+++ + ++.++
T Consensus 63 g~~v~~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~v~~~----~~~~i~s~ 133 (346)
T 3qsl_A 63 GLDVSIADFAGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFAL-QGRA----PMIGVGVSKK----NLPGYKGP 133 (346)
T ss_dssp TCEEEEEECSSHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEE-SBSS----CCEEEEEETT----TCTTCCSG
T ss_pred CCeEEEEecCChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEe-cccC----CCcEEEEecC----cccCCCCh
Confidence 46777777888999999999999999988776544332 3345555542 2221 1235677887 6 79999
Q ss_pred ccCCCCcccCCCCCCCCCchhHHHHHHhCCC
Q 044324 166 MDFKGHKSCHGSYSTAAGWNYPVNHIKGSTP 196 (291)
Q Consensus 166 ~dLkGKksCHtG~~~taGW~iPvg~L~~~~~ 196 (291)
+||+|||...++.+++. ..+....|.+.|+
T Consensus 134 ~DL~Gk~i~~~~~gs~~-~~~~~~~l~~~G~ 163 (346)
T 3qsl_A 134 ADLKGRKIGVTAPGSST-NMVVNFFLAKHGL 163 (346)
T ss_dssp GGGTTCEEEESSTTSHH-HHHHHHHHHHTTC
T ss_pred HHcCCCEEEECCCCcHH-HHHHHHHHHHcCC
Confidence 99999999988776542 3333445555565
No 22
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=96.40 E-value=0.0074 Score=55.14 Aligned_cols=103 Identities=10% Similarity=-0.036 Sum_probs=65.2
Q ss_pred hhcCCCcceEE--EecC-CHHHHHHHHhccCCcEEEeCCceeeeec-ccCCcEEEEEEeecCCCceeEEEEEEecCcccc
Q 044324 84 ISQSEDYTWKC--VKRD-TAQECLDSARKGEADIINLEAGLAYTAF-LNFSMKAIANEVYCDHAQSYDAVAVINRKVCQE 159 (291)
Q Consensus 84 a~~~~~p~l~C--V~~~-s~~dCm~~I~~g~ADiv~ld~~~iy~A~-~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~ 159 (291)
.+...+..++- +... +..+.++++..|++|++.........+. +...++.|.. .+... ..+.||+++
T Consensus 38 ~~~~~G~~v~~~~~~~~g~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~----~~~lvv~~~---- 108 (348)
T 3uif_A 38 ELRKQGIKVEWVPAAMASVGPVINEGFASGKIDFGIYGDLPPIILNASKPTVQLVAP-WGTTS----NSYLVVPKN---- 108 (348)
T ss_dssp HHHHTTEEEEEEEECTTCHHHHHHHHHHTTCCCEEEEESHHHHHHHHHSCCEEEEEE-CCCCC----CCEEEEETT----
T ss_pred HHHhcCCeEEEEecccCCCcHHHHHHHHcCCCCEEecCcHHHHHHHhCCCCEEEEEe-ccCCC----ceEEEEECC----
Confidence 33333566777 4443 3677899999999999996665443332 3345554432 23211 224567888
Q ss_pred CCCCCcccCCCCcccCCCCCCCCCchhHHHHHHhCCCC
Q 044324 160 NGGINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGSTPT 197 (291)
Q Consensus 160 S~~~~l~dLkGKksCHtG~~~taGW~iPvg~L~~~~~~ 197 (291)
+++.+++||||||...+ .+ +.+..+....|.+.|+.
T Consensus 109 s~i~s~~DLkGk~I~v~-~g-s~~~~~~~~~l~~~Gl~ 144 (348)
T 3uif_A 109 STAKSIKDLKGKKIALH-RG-RPWELAFSNLLQSEGLT 144 (348)
T ss_dssp CCCCSGGGGTTSEEEEC-TT-STHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHcCCCEEEec-CC-ChHHHHHHHHHHHcCCC
Confidence 88999999999999875 33 33455555566666653
No 23
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=96.34 E-value=0.0047 Score=56.32 Aligned_cols=125 Identities=13% Similarity=-0.038 Sum_probs=81.2
Q ss_pred CCceEEEecc-ch---HHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeec-ccCCcEEEEE
Q 044324 62 EATIKWCAVR-DQ---YEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAF-LNFSMKAIAN 136 (291)
Q Consensus 62 ~~~vRwCv~S-~E---~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~-~~~~L~PIl~ 136 (291)
+.++|+=... .. ..--..+ ...+...+..++-+...+..+.++++..|++|++.......+.+. +...++.|..
T Consensus 51 ~~~l~vg~~~~~~~~p~~~a~~l-~g~~~~~G~~Ve~~~~~~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~ 129 (341)
T 3un6_A 51 QQVIKIGYLPITHSANLMMTKKL-LSQYNHPKYKLELVKFNNWPDLMDALNSGRIDGASTLIELAMKSKQKGSNIKAVAL 129 (341)
T ss_dssp CCEEEEEECSSGGGHHHHHHHHH-HHTSSSCSSEEEEEECSSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTCCCEEEEE
T ss_pred CceEEEEEEeccccHHHHHHHHh-hChHHHcCCcEEEEEcCCHHHHHHHHHcCCCCEEecchHHHHHHHHCCCCeEEEee
Confidence 4567776654 32 1111122 223344467888889889999999999999999988776555433 4456666654
Q ss_pred EeecCCCceeEEEEEEecCccccCCCCCcccC-CCCcccCCCCCCCCCchhHHHHHHhCCCCC
Q 044324 137 EVYCDHAQSYDAVAVINRKVCQENGGINLMDF-KGHKSCHGSYSTAAGWNYPVNHIKGSTPTF 198 (291)
Q Consensus 137 E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dL-kGKksCHtG~~~taGW~iPvg~L~~~~~~c 198 (291)
- + ....+.||+++ +++.+++|| ||||...+..+++ ...+.-..|.+.|+..
T Consensus 130 ~-~-----~~~~~ivv~~~----s~I~s~~DL~kGk~i~v~~~~s~-~~~~~~~~l~~~Gl~~ 181 (341)
T 3un6_A 130 G-H-----HEGNVIMGQKG----MHLNEFNNNGDDYHFGIPHRYST-HYLLLEELRKQLKIKP 181 (341)
T ss_dssp S-C-----EECEEEEESTT----CCGGGCCSSSSCEEEEESCSSSH-HHHHHHHHHHHTTCCT
T ss_pred c-C-----CCceEEEEcCC----CCCCCHHHhCCCCEEEECCCCCH-HHHHHHHHHHHcCCCH
Confidence 2 1 12335578998 889999999 9999998765443 2333334566666543
No 24
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=95.90 E-value=0.013 Score=53.58 Aligned_cols=100 Identities=11% Similarity=0.051 Sum_probs=64.2
Q ss_pred CCcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeec-ccCCcEEEEEEeecCCCceeEEEEEEecCccccCCCCCcc
Q 044324 88 EDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAF-LNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLM 166 (291)
Q Consensus 88 ~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~-~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~ 166 (291)
.+-+++-+...+-.+.+++|..|++|+.......+..+. +...++.|..- +.. ....+.+++++ +.+.+++
T Consensus 36 ~GLdVei~~~~~~~~~~~al~sG~~D~g~~~~~~~~~a~~~G~~v~~v~~~-~~~---~~~~~~~~~~~----~~~~~~~ 107 (342)
T 4esw_A 36 ENLDIAILEPSNPSDVTELVGSGKVDMGLKAMVGTLAAKARGFPVTSIGSL-LDE---PFTGICYLEGS----GITSDFQ 107 (342)
T ss_dssp TTCEEEEEEESSGGGHHHHHHHTSSSEEEEEHHHHHHHHHTTCCEEEEEEE-ECS---CCEEEEEETTS----SCCSSGG
T ss_pred cCCeEEEEeCCChHHHHHHHHcCCcCEEEecHHHHHHHHHCCCCeEEEEEe-ccC---Ccccccccccc----cccCCHH
Confidence 457788888889999999999999999998877766665 33444544332 221 12445454444 4346799
Q ss_pred cCCCCcccCCCCCCCCCchhHHHHHHhCCCCC
Q 044324 167 DFKGHKSCHGSYSTAAGWNYPVNHIKGSTPTF 198 (291)
Q Consensus 167 dLkGKksCHtG~~~taGW~iPvg~L~~~~~~c 198 (291)
|||||+.-.++ ..+..+-...|.+.|+..
T Consensus 108 dLkGK~ig~~~---~~~~~~l~~~L~~~Gl~~ 136 (342)
T 4esw_A 108 SLKGKRIGYVG---EFGKIQVDELTKHYGMTP 136 (342)
T ss_dssp GGTTCEEEESS---SHHHHHHHHHHGGGTCCG
T ss_pred HhCCCEEEecC---CchHHHHHHHHHHcCCCh
Confidence 99999997653 223333333444556543
No 25
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=95.78 E-value=0.019 Score=50.86 Aligned_cols=98 Identities=13% Similarity=0.084 Sum_probs=63.5
Q ss_pred cceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeec-ccCCcEEEEEEeecCCCceeEEEEEEecCccccCCCCCcccC
Q 044324 90 YTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAF-LNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMDF 168 (291)
Q Consensus 90 p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~-~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dL 168 (291)
..++-+...+..+.++++..|++|++.........+. ....++.+....+.. ...+.||+++ +++.+++||
T Consensus 32 ~~v~~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~lv~~~~----~~i~s~~dL 103 (308)
T 2x26_A 32 SKISWVEFPAGPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVGVEPPKP----KAEVILVAEN----SPIKTVADL 103 (308)
T ss_dssp SEEEEEECSSHHHHHHHHHHTSCSEEEECSHHHHHHHHTTCCEEEEEEECCCG----GGEEEEEETT----CSCCSGGGG
T ss_pred CceEEEECCCcHHHHHHHHCCCCCEEcccCcHHHHHHhcCCCeEEEEEecCCC----CceEEEEeCC----CCCCCHHHc
Confidence 4677777777779999999999999987654322221 334556555544321 1346677888 789999999
Q ss_pred CCCcccCCCCCCCCCchhHHHHHHhCCCC
Q 044324 169 KGHKSCHGSYSTAAGWNYPVNHIKGSTPT 197 (291)
Q Consensus 169 kGKksCHtG~~~taGW~iPvg~L~~~~~~ 197 (291)
+|||...+ .+++ ...+-...|.+.|+.
T Consensus 104 ~Gk~i~~~-~gs~-~~~~l~~~l~~~Gl~ 130 (308)
T 2x26_A 104 KGHKVAFQ-KGSS-SHNLLLRALRQAGLK 130 (308)
T ss_dssp TTSEEEEC-TTSH-HHHHHHHHHHHTTCC
T ss_pred CCCEEeee-CCCc-HHHHHHHHHHHcCCC
Confidence 99998874 2333 233333445556653
No 26
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=95.72 E-value=0.037 Score=50.92 Aligned_cols=109 Identities=17% Similarity=0.165 Sum_probs=70.1
Q ss_pred CCCCceEEEecc--chH-----HHHHHHHHHh-hcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeec-----
Q 044324 60 GSEATIKWCAVR--DQY-----EDCEYLVSII-SQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAF----- 126 (291)
Q Consensus 60 ~~~~~vRwCv~S--~E~-----~KC~~l~~~a-~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~----- 126 (291)
.+.+.||+-+.+ ... .-++.| ... ....+..++=+......+-+..+.+|++|++.....-++.+.
T Consensus 29 ~~~~~i~i~~g~~gG~~~~~~~~la~~l-~~~~~~~~g~~v~v~~~~g~~~~i~~l~~g~~D~~~~~~~~~~~a~~g~~~ 107 (327)
T 4ddd_A 29 LNREYILIGTGSMTGVYYPIGGSICRFI-ASDYGKDNKIICSISSTTGSVYNLNSIRYSNMDISIVQSDLEYYAYNGLGF 107 (327)
T ss_dssp CCCEEEEEECCCTTSSHHHHHHHHHHHH-HHHHGGGTSEEEEEECCCCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCGG
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHH-HhccCCCCCeEEEEEecCcHHHHHHHHHcCCCcEEEECcHHHHHHHhCcCc
Confidence 456688888876 232 234444 322 111234455555567889999999999999988766433221
Q ss_pred -----ccCCcEEEEEEeecCCCceeEEEEEEecCccccCCCCCcccCCCCcccCCCCC
Q 044324 127 -----LNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYS 179 (291)
Q Consensus 127 -----~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dLkGKksCHtG~~ 179 (291)
..-++++|.. .+. ...+.||+++ +++.+++||+|||......+
T Consensus 108 f~~~~~~~d~~~v~~-~~~-----~~~~lvv~~d----s~i~sl~DL~gk~v~~~~~G 155 (327)
T 4ddd_A 108 YEKMLPMDNLRMLAS-LHK-----EYLTIVVKKS----SNISVIDDIKGKRVNIGSPG 155 (327)
T ss_dssp GTTSCCCTTEEEEEE-EEE-----EEEEEEEETT----SSCCSGGGGTTSEEECCSTT
T ss_pred ccccCCCcchhehhc-cCC-----ccEEEEEECC----CCCCCHHHhCCCEEecCCCC
Confidence 1135666642 221 2457788999 88999999999999876544
No 27
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=95.00 E-value=0.028 Score=47.71 Aligned_cols=116 Identities=10% Similarity=0.005 Sum_probs=55.8
Q ss_pred ccccCCCcccccC-CCCCceEEEecc--ch-----H----HHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcE
Q 044324 47 HVVPSGEVGDDEE-GSEATIKWCAVR--DQ-----Y----EDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADI 114 (291)
Q Consensus 47 ~~~~~~~~~~~~~-~~~~~vRwCv~S--~E-----~----~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADi 114 (291)
|..|.+|-+..-. ...+++|+++.. .= . --.-++.+..+...+.+++-+.. +...+++.+++|++|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~l~v~~~~~~~P~~~~~~g~~~G~~~dl~~~i~~~~g~~~~~~~~-~~~~~~~~l~~g~~D~ 85 (249)
T 4f3p_A 7 HHMGTLEAQTQGPGSMAKELVVGTDTSFMPFEFKQGDKYVGFDLDLWAEIAKGAGWTYKIQPM-DFAGLIPALQTQNIDV 85 (249)
T ss_dssp -----------------CCEEEEEESCBTTTBEEETTEEESHHHHHHHHHHHHHTCCEEEEEE-CGGGHHHHHHTTSCSE
T ss_pred cccchhhhhhcCCcccCceEEEEeCCCCCCeEEecCCeEEEEhHHHHHHHHHHcCCceEEEec-CHHHHHHHHHCCCCCE
Confidence 4555555444433 246788998872 10 0 11333323333333455666654 6799999999999999
Q ss_pred EEeCCceeeeecccCCcEEEEEEeecCCCceeEEEEEEecCccccC-CCCCcccCCCCcccC
Q 044324 115 INLEAGLAYTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQEN-GGINLMDFKGHKSCH 175 (291)
Q Consensus 115 v~ld~~~iy~A~~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S-~~~~l~dLkGKksCH 175 (291)
+...-. +...+.-.+. +.+-| .....+.|++++ + .+.+++||+||+.+.
T Consensus 86 ~~~~~~--~~~~r~~~~~--~s~p~----~~~~~~~~~~~~----~~~i~~~~dL~g~~i~v 135 (249)
T 4f3p_A 86 ALSGMT--IKEERRKAID--FSDPY----YDSGLAAMVQAN----NTTIKSIDDLNGKVIAA 135 (249)
T ss_dssp EEEEEE--CCHHHHTTEE--ECSCC----EEEEEEEEEETT----CCSCCSSGGGTTSEEEE
T ss_pred EEeccc--cCHHHHcCcc--eecce----eeccEEEEEECC----CCCcCChHHhCCCEEEE
Confidence 643211 1111111111 00000 123446677887 5 488999999999774
No 28
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=94.88 E-value=0.038 Score=46.28 Aligned_cols=75 Identities=7% Similarity=-0.021 Sum_probs=47.4
Q ss_pred CcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEeecCCCceeEEEEEEecCccccCCCCCcccC
Q 044324 89 DYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMDF 168 (291)
Q Consensus 89 ~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dL 168 (291)
+.+++-+.. +..++++.+++|++|++...-.......+.+...|++.. ....+.|++++ +.+.+++||
T Consensus 49 g~~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~~~p~~~~-------~~~~~~~~~~~----~~i~~~~dL 116 (242)
T 3del_B 49 GKTLDVREF-SFDALILNLKQHRIDAVITGMSITPSRLKEILMIPYYGE-------EIKHLVLVFKG----ENKHPLPLT 116 (242)
T ss_dssp TCEEEEEEC-CGGGHHHHHHTTSSSEECSSBBCCHHHHTTEEEEEEEEE-------EESEEEEEEES----CCSCCCCGG
T ss_pred CCceEEEEc-CHHHHHHHHhCCCcCEEEecCcCCHHHHhcccceeeeec-------CCceEEEEeCC----CCCCCHHHh
Confidence 456666666 889999999999999985321111100011111333311 11246778888 778999999
Q ss_pred CCCcccC
Q 044324 169 KGHKSCH 175 (291)
Q Consensus 169 kGKksCH 175 (291)
+||+.+.
T Consensus 117 ~g~~i~v 123 (242)
T 3del_B 117 QYRSVAV 123 (242)
T ss_dssp GSSCEEE
T ss_pred CCCEEEE
Confidence 9999864
No 29
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=94.36 E-value=0.051 Score=45.57 Aligned_cols=75 Identities=11% Similarity=0.008 Sum_probs=46.6
Q ss_pred CCcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEeecCCCceeEEEEEEecCccccCCCCCccc
Q 044324 88 EDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMD 167 (291)
Q Consensus 88 ~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~d 167 (291)
.+..++-+.. +..++++.+++|++|++...-.. ...+.-.+. +..-|. ....+.|++++ +++.+++|
T Consensus 41 ~g~~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~--~~~r~~~~~--fs~p~~----~~~~~~~~~~~----~~~~~~~d 107 (237)
T 3kzg_A 41 LHATCTFEAY-IFDDLFPALKNREVDLVIASMII--TDERKKHFI--FSLPYM----ESNSQYITTVD----SKISTFDD 107 (237)
T ss_dssp TTCEEEEEEE-CGGGHHHHHHTTSSSEECSSCBC--CTTGGGTCE--ECCCSB----CCEEEEEEETT----CSCCSGGG
T ss_pred hCCceEEEEc-CHHHHHHHHhCCCCCEEEEcccc--ChhHhccce--eeeeee----ecceEEEEECC----CCCCCHHH
Confidence 3445665655 68999999999999987542211 111111111 111111 23457778888 77899999
Q ss_pred CCCCcccC
Q 044324 168 FKGHKSCH 175 (291)
Q Consensus 168 LkGKksCH 175 (291)
|+|||.+.
T Consensus 108 L~g~~i~~ 115 (237)
T 3kzg_A 108 LHGKKIGV 115 (237)
T ss_dssp GTTCEEEE
T ss_pred hCCCEEEE
Confidence 99999865
No 30
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=94.24 E-value=0.048 Score=44.99 Aligned_cols=75 Identities=15% Similarity=0.098 Sum_probs=47.3
Q ss_pred CcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeeccc--CCcEEEEEEeecCCCceeEEEEEEecCccccC--CCCC
Q 044324 89 DYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLN--FSMKAIANEVYCDHAQSYDAVAVINRKVCQEN--GGIN 164 (291)
Q Consensus 89 ~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~--~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S--~~~~ 164 (291)
+..++-+...+..++++++++|++|++...-. +...+. -.+. +..-| .....+.|++++ + .+.+
T Consensus 43 g~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~--~~~~r~~~~~~~--~s~p~----~~~~~~~~~~~~----~~~~i~~ 110 (233)
T 1ii5_A 43 KWNSEYVRQNSISAGITAVAEGELDILIGPIS--VTPERAAIEGIT--FTQPY----FSSGIGLLIPGT----ATPLFRS 110 (233)
T ss_dssp TCCEEEEECSCHHHHHHHHHTTSCSEEEEEEE--CCHHHHTSTTEE--ECCCC----EEEEEEEEEEGG----GTTTCSS
T ss_pred CCcEEEEEeCCHHHHHHHHHCCCcCEEEeeee--cCccccccceeE--Eccce----eecCeEEEEECC----CCCCCCC
Confidence 45677777778999999999999999753211 111111 1111 10001 123456778887 5 6789
Q ss_pred cccCCCCcccC
Q 044324 165 LMDFKGHKSCH 175 (291)
Q Consensus 165 l~dLkGKksCH 175 (291)
++||+|||.+.
T Consensus 111 ~~dL~g~~v~~ 121 (233)
T 1ii5_A 111 VGDLKNKEVAV 121 (233)
T ss_dssp GGGGTTCEEEE
T ss_pred HHHhCCCeEEE
Confidence 99999999775
No 31
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=93.97 E-value=0.075 Score=45.50 Aligned_cols=133 Identities=14% Similarity=-0.004 Sum_probs=76.8
Q ss_pred hcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcE---EEEEEeecCCCceeEEEEEEecCccccCC
Q 044324 85 SQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMK---AIANEVYCDHAQSYDAVAVINRKVCQENG 161 (291)
Q Consensus 85 ~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~---PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~ 161 (291)
+...+..++-+.. +..++++.+++|++|++...-. +...+.-.+. |++ ....+.|++++ +.
T Consensus 55 ~~~~g~~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~--~t~~r~~~~~fs~p~~---------~~~~~~~~~~~----~~ 118 (268)
T 3hv1_A 55 FKLYGIDVEWQAI-DWDMKETELKNGTIDLIWNGYS--VTDERKQSADFTEPYM---------VNEQVLVTKKS----SG 118 (268)
T ss_dssp HHTTTCEEEEEEC-CGGGHHHHHHHTSCSEECSSCB--CCHHHHTTCEECCCCE---------EECEEEEEEGG----GC
T ss_pred HHHhCCcEEEEEC-CHHHHHHHHHCCCCCEEEecCc--cCHHHHhcCcCcHHHe---------eCceEEEEECC----CC
Confidence 3344556666665 5899999999999998862211 1111111111 221 23347778888 67
Q ss_pred CCCcccCCCCcccCCCCCCCCCchhHHHHHHhCCCCCCCCCCchhhhhhccccccCCCCCCCCCCCCcCCCCCCCCCCCC
Q 044324 162 GINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGSTPTFDSGKISDIEIASSFFSEVCAPGEFEGTGMCSGCGIENGSCHSN 241 (291)
Q Consensus 162 ~~~l~dLkGKksCHtG~~~taGW~iPvg~L~~~~~~c~~~~~~~~~~~s~FFs~SCvPG~~~~~~LC~lC~g~~~~C~~~ 241 (291)
+.+++||+|||.+.. .|+.. ...|.+.+... ...|. +. ..
T Consensus 119 i~~~~dL~g~~i~v~-----~g~~~-~~~l~~~~~~~-----------~~~~~-----~~------------------~~ 158 (268)
T 3hv1_A 119 IDSVAGMAGKTLGAQ-----AGSSG-YDAFNASPKIL-----------KDVVA-----NQ------------------KV 158 (268)
T ss_dssp CCSSGGGTTCCEEEE-----TTCHH-HHHHHHCTTTT-----------TTTSG-----GG------------------CE
T ss_pred CCCHHHhCCCEEEEE-----eCCch-HHHHHHhhHHH-----------hhhcc-----cc------------------eE
Confidence 899999999998763 23332 22333322111 11110 00 01
Q ss_pred CCccCccccccccccCCCcEEEEechhhhhhh
Q 044324 242 SLYFGDSGAFRCLVEELGDIAFVRGDTALLYS 273 (291)
Q Consensus 242 e~Y~Gy~GAlrCL~eg~GDVAFVk~~tV~~~~ 273 (291)
..|.....+|+=|..|.-|++++...++..+.
T Consensus 159 ~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~ 190 (268)
T 3hv1_A 159 VQYSTFTQALIDLNSGRIDGLLIDRVYANYYL 190 (268)
T ss_dssp EEESSHHHHHHHHHHTSCSEEEEEHHHHHHHH
T ss_pred EEeCCHHHHHHHHHcCCCCEEEeCHHHHHHHH
Confidence 22445667888888999999888887766554
No 32
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=93.92 E-value=0.078 Score=44.22 Aligned_cols=82 Identities=16% Similarity=0.130 Sum_probs=51.1
Q ss_pred HHHHHhhcCCC-cceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeec-ccCCc-EEEEEEeecCCCceeEEEEEEec-
Q 044324 79 YLVSIISQSED-YTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAF-LNFSM-KAIANEVYCDHAQSYDAVAVINR- 154 (291)
Q Consensus 79 ~l~~~a~~~~~-p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~-~~~~L-~PIl~E~y~~~~~~Y~aVAVVkK- 154 (291)
+|.+..+...+ .+++-+.. +..++++.+++|++|++...-... ..+ +.+.. .|++ ....+.|+++
T Consensus 35 dl~~~i~~~~g~~~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~-~~r~~~~~~s~p~~---------~~~~~~~~~~~ 103 (246)
T 4eq9_A 35 EVVRAIFKDSDKYDVKFEKT-EWSGVFAGLDADRYNMAVNNLSYT-KERAEKYLYAAPIA---------QNPNVLVVKKD 103 (246)
T ss_dssp HHHHHHHTTCSSEEEEEEEC-CHHHHHHHHHTTSCSEECSSCCCC-HHHHHHEEECCCCE---------ECCEEEEEETT
T ss_pred HHHHHHHHHcCCceEEEEeC-CHHHHHHHHhCCCcCEEecccccC-hhhhhceeecccee---------cCceEEEEECC
Confidence 34344444556 67777766 899999999999999986321100 011 10100 1111 1234677788
Q ss_pred CccccCCCCCcccCCCCcccC
Q 044324 155 KVCQENGGINLMDFKGHKSCH 175 (291)
Q Consensus 155 ~~~~~S~~~~l~dLkGKksCH 175 (291)
+ +.+.+++||+||+.+.
T Consensus 104 ~----~~i~~~~dL~g~~i~~ 120 (246)
T 4eq9_A 104 D----SSIKSLDDIGGKSTEV 120 (246)
T ss_dssp C----CSCSSGGGCTTCEEEE
T ss_pred C----CCCCCHHHhCCCEEEE
Confidence 6 6789999999999976
No 33
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=93.82 E-value=0.067 Score=46.14 Aligned_cols=75 Identities=15% Similarity=0.064 Sum_probs=46.9
Q ss_pred CcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEeecCCCceeEEEEEEecCccccCCCCCcccC
Q 044324 89 DYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMDF 168 (291)
Q Consensus 89 ~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dL 168 (291)
+..++-+.. +..++++++++|++|++...-. +...+...+. +.+-| .....+.|++++ +++.+++||
T Consensus 79 g~~v~~~~~-~~~~~~~~l~~G~~D~~~~~~~--~~~~r~~~~~--~s~p~----~~~~~~l~~~~~----~~i~~~~dL 145 (272)
T 2pvu_A 79 GLDYELKNI-GWDPLFASLQSKEVDMGISGIT--ITDERKQSYD--FSDPY----FEATQVILVKQG----SPVKNALDL 145 (272)
T ss_dssp TCCEEEEEC-CHHHHHHHHHHTSSSEECSSCB--CCHHHHTTEE--ECSCC----EEECEEEEEETT----CCCCSGGGG
T ss_pred CCceEEEEC-CHHHHHHHHhCCCCCEEEeCCc--CCHHHHhcCc--cchhh----hccceEEEEECC----CCCCCHHHh
Confidence 445665554 4899999999999999864311 1111111111 10101 123447788888 778999999
Q ss_pred CCCcccCC
Q 044324 169 KGHKSCHG 176 (291)
Q Consensus 169 kGKksCHt 176 (291)
+|||.+-.
T Consensus 146 ~g~~i~~~ 153 (272)
T 2pvu_A 146 KGKTIGVQ 153 (272)
T ss_dssp TTSCEEEE
T ss_pred CCCeEEEE
Confidence 99997653
No 34
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=93.79 E-value=0.067 Score=43.84 Aligned_cols=76 Identities=12% Similarity=0.103 Sum_probs=45.4
Q ss_pred CcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecc--cCCcE-EEEEEeecCCCceeEEEEEEecCccccCCCCCc
Q 044324 89 DYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFL--NFSMK-AIANEVYCDHAQSYDAVAVINRKVCQENGGINL 165 (291)
Q Consensus 89 ~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~--~~~L~-PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l 165 (291)
+..++-+...+..++++++++|++|++...-. +...+ .+... |++ ....+.|++++.-....+.++
T Consensus 39 g~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~--~~~~r~~~~~~~~p~~---------~~~~~~~~~~~~~~~~~~~~~ 107 (228)
T 2pyy_A 39 GIESKLIEYSSVPELISAIKDNKVNLGIAAIS--ITAEREQNFDFSLPIF---------ASGLQIMVRNLESGTGDIRSI 107 (228)
T ss_dssp TCCEEEEECSSHHHHHHHHHTTSCSEECSSCB--CCHHHHHHSEECSCSE---------EEEEEEEEEC-----CCCCSG
T ss_pred CCcEEEEEcCCHHHHHHHHHCCCcCEEEeccc--cCHHHHccceecccch---------hcceEEEEECCccccCCcCCH
Confidence 45677777778999999999999999853211 11111 11110 211 223466777761000157899
Q ss_pred ccCCCCcccC
Q 044324 166 MDFKGHKSCH 175 (291)
Q Consensus 166 ~dLkGKksCH 175 (291)
+||+|||.+.
T Consensus 108 ~dL~g~~i~~ 117 (228)
T 2pyy_A 108 DDLPGKVVAT 117 (228)
T ss_dssp GGCTTCEEEE
T ss_pred HHcCCCeEEE
Confidence 9999999865
No 35
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=93.66 E-value=0.085 Score=43.16 Aligned_cols=71 Identities=7% Similarity=0.044 Sum_probs=44.6
Q ss_pred CcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcE---EEEEEeecCCCceeEEEEEEecCccccC-CCCC
Q 044324 89 DYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMK---AIANEVYCDHAQSYDAVAVINRKVCQEN-GGIN 164 (291)
Q Consensus 89 ~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~---PIl~E~y~~~~~~Y~aVAVVkK~~~~~S-~~~~ 164 (291)
+..++-+.. +..++++++++|++|++...-. +...+...+. |+. ....+.|++++ + .+.+
T Consensus 40 g~~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~--~~~~r~~~~~~~~p~~---------~~~~~~~~~~~----~~~i~~ 103 (226)
T 1wdn_A 40 KLDYELKPM-DFSGIIPALQTKNVDLALAGIT--ITDERKKAIDFSDGYY---------KSGLLVMVKAN----NNDVKS 103 (226)
T ss_dssp TCCEEEEEE-CGGGHHHHHHTTSSSEEEEEEE--CCHHHHTTSEECSCCE---------EEEEEEEEETT----CCSCSS
T ss_pred CCEEEEEEC-CHHHHHHHHhCCCCCEEEEcCc--CCHHHhCccccccchh---------cCceEEEEeCC----CCCCCC
Confidence 334554443 6899999999999999864211 1111111111 221 23457788888 6 3889
Q ss_pred cccCCCCcccC
Q 044324 165 LMDFKGHKSCH 175 (291)
Q Consensus 165 l~dLkGKksCH 175 (291)
++||+||+.+.
T Consensus 104 ~~dL~g~~i~~ 114 (226)
T 1wdn_A 104 VKDLDGKVVAV 114 (226)
T ss_dssp STTTTTCEEEE
T ss_pred HHHhCCCEEEE
Confidence 99999999775
No 36
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=93.40 E-value=0.11 Score=42.56 Aligned_cols=76 Identities=9% Similarity=0.038 Sum_probs=46.7
Q ss_pred CCCcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEeecCCCceeEEEEEEecCccccCCC-CCc
Q 044324 87 SEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGG-INL 165 (291)
Q Consensus 87 ~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~-~~l 165 (291)
..+..++-+. .+...+++.+++|++|++...-. +...+...+. +.+-|. ....+.|++++ +++ .++
T Consensus 38 ~~g~~~~~~~-~~~~~~~~~l~~g~~D~~~~~~~--~~~~r~~~~~--~s~p~~----~~~~~l~~~~~----~~~~~~~ 104 (227)
T 3tql_A 38 QMQAVCTISN-QPWDSLIPSLKLGKFDALFGGMN--ITTARQKEVD--FTDPYY----TNSVSFIADKN----TPLTLSK 104 (227)
T ss_dssp HTTCEEEEEE-CCHHHHHHHHHHTSCSEECSSCB--CCTTGGGTEE--ECSCSB----CCEEEEEEETT----SCCCCST
T ss_pred HhCCeEEEEe-CCHHHHHHHHhCCCCCEEEecCc--CCHhHHhhee--ccccee----ccceEEEEeCC----CCCCCCH
Confidence 3355566555 48999999999999999853211 1111111111 111111 23456778888 666 799
Q ss_pred ccCCCCcccC
Q 044324 166 MDFKGHKSCH 175 (291)
Q Consensus 166 ~dLkGKksCH 175 (291)
+||+||+.+.
T Consensus 105 ~dL~g~~v~~ 114 (227)
T 3tql_A 105 QGLKGKIIGV 114 (227)
T ss_dssp TTTTTCEEEE
T ss_pred HHhCCCEEEE
Confidence 9999999875
No 37
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=93.33 E-value=0.15 Score=42.05 Aligned_cols=124 Identities=13% Similarity=0.072 Sum_probs=71.5
Q ss_pred CcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEeecCCCceeEEEEEEecCccccCC-CCCccc
Q 044324 89 DYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENG-GINLMD 167 (291)
Q Consensus 89 ~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~-~~~l~d 167 (291)
+.+++-+.. +...+++.+++|++|++. . -.+...+.-.+. +.+-+. ....+.|++++ ++ +.+++|
T Consensus 49 g~~~~~~~~-~~~~~~~~l~~g~~D~~~-~--~~~~~~r~~~~~--~s~p~~----~~~~~~~~~~~----~~~~~~~~d 114 (234)
T 3h7m_A 49 GMTVEFRLG-AWSEMFSALKSGRVDVLQ-G--ISWSEKRARQID--FTPPHT----IVYHAIFARRD----SPPAAGLED 114 (234)
T ss_dssp TCCEEEEEE-CGGGHHHHHHTTSSSEEE-E--EECCHHHHTTEE--EEEEEE----EEEEEEEEESS----SCCCSSGGG
T ss_pred CCceEEEeC-CHHHHHHHHhCCCeeEEE-e--ccCCHhHHhhcC--CCcccc----ccceEEEEECC----CCCCCCHHH
Confidence 445555543 789999999999999962 1 112211111111 111111 23446778888 65 899999
Q ss_pred CCCCcccCCCCCCCCCchhHHHHHHhCCCCCCCCCCchhhhhhccccccCCCCCCCCCCCCcCCCCCCCCCCCCCCccCc
Q 044324 168 FKGHKSCHGSYSTAAGWNYPVNHIKGSTPTFDSGKISDIEIASSFFSEVCAPGEFEGTGMCSGCGIENGSCHSNSLYFGD 247 (291)
Q Consensus 168 LkGKksCHtG~~~taGW~iPvg~L~~~~~~c~~~~~~~~~~~s~FFs~SCvPG~~~~~~LC~lC~g~~~~C~~~e~Y~Gy 247 (291)
|+||+.+-. .|+.. ...|.+.+.. . .+ ..|..+
T Consensus 115 L~g~~i~~~-----~g~~~-~~~l~~~~~~-------~-~~---------------------------------~~~~~~ 147 (234)
T 3h7m_A 115 LRGRKVALH-----RDGIM-HEYLAERGYG-------K-DL---------------------------------VLTPTP 147 (234)
T ss_dssp GTTSCEEEE-----TTSHH-HHHHHTTTCG-------G-GE---------------------------------EEESSH
T ss_pred hCCCEEEEE-----eCchH-HHHHHhcCCC-------c-eE---------------------------------EEeCCH
Confidence 999998653 23332 1223322210 0 01 113345
Q ss_pred cccccccccCCCcEEEEechhhhhhh
Q 044324 248 SGAFRCLVEELGDIAFVRGDTALLYS 273 (291)
Q Consensus 248 ~GAlrCL~eg~GDVAFVk~~tV~~~~ 273 (291)
..+|+=|..|.-|++++....+..++
T Consensus 148 ~~~~~~l~~g~vDa~~~~~~~~~~~~ 173 (234)
T 3h7m_A 148 ADALRLLAAGGCDYAVVAMVPGMYII 173 (234)
T ss_dssp HHHHHHHHTTSSSEEEEEHHHHHHHH
T ss_pred HHHHHHHHcCCceEEEeccHHHHHHH
Confidence 67788888888998888877765544
No 38
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=93.30 E-value=0.24 Score=43.71 Aligned_cols=123 Identities=13% Similarity=0.141 Sum_probs=71.2
Q ss_pred CCceEEEecc-c-hHH-HHHHHHHHhhcC--CCcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeec--c---c---
Q 044324 62 EATIKWCAVR-D-QYE-DCEYLVSIISQS--EDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAF--L---N--- 128 (291)
Q Consensus 62 ~~~vRwCv~S-~-E~~-KC~~l~~~a~~~--~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~--~---~--- 128 (291)
.++||+-+.. . ... --..| ...... .+..++-+...+..+-++++.+|++|++.......+.+. + .
T Consensus 18 ~~~i~i~~~~~~g~~~~~~~~l-a~~~~~~~~g~~v~v~~~~~~~~~~~~l~~g~~Dl~~~~~~~~~~~~~~~~~~~~~~ 96 (314)
T 1us5_A 18 QEFITIGSGSTTGVYFPVATGI-AKLVNDANVGIRANARSTGGSVANINAINAGEFEMALAQNDIAYYAYQGCCIPAFEG 96 (314)
T ss_dssp CEEEEEECCCTTSSHHHHHHHH-HHHHHHHTSSEEEEEECCSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCSSTTTTT
T ss_pred CceEEEEeCCCCchhHHHHHHH-HHHHHhcCCCceEEEEecCcHHHHHHHHHcCCCcEEEEccHhHHHHhcCCCCCCCCC
Confidence 3567877765 2 222 22333 322221 234555555567889999999999999876544322111 1 1
Q ss_pred ---CCcEEEEEEeecCCCceeEEEEEEecCccccCCCCCcccCCCCcccCCCCCCCCCchhHHHHHHhCCC
Q 044324 129 ---FSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGSTP 196 (291)
Q Consensus 129 ---~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dLkGKksCHtG~~~taGW~iPvg~L~~~~~ 196 (291)
.+++++.. .+. ...+.||+++ +++.+++||+||+......+++ .+.+-...+.+.|+
T Consensus 97 ~~~~~~~~v~~-~~~-----~~~~lvv~~~----~~i~sl~dL~g~~i~~~~~gs~-~~~~~~~~l~~~G~ 156 (314)
T 1us5_A 97 KPVKTIRALAA-LYP-----EVVHVVARKD----AGIRTVADLKGKRVVVGDVGSG-TEQNARQILEAYGL 156 (314)
T ss_dssp CCCTTEEEEEE-EEE-----EEEEEEEETT----SSCSSGGGGTTSEEECCCTTCH-HHHHHHHHHHHTTC
T ss_pred CCccchhehhh-cCc-----ceEEEEEECC----CCCCcHHHhCCCEeecCCCCch-HHHHHHHHHHHcCC
Confidence 35665532 221 2457788998 8889999999999887665433 23332333444554
No 39
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=93.14 E-value=0.12 Score=44.91 Aligned_cols=71 Identities=13% Similarity=0.056 Sum_probs=45.6
Q ss_pred cceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeec-ccCCc-EEEEEEeecCCCceeEEEEEEecCccccCCCCCccc
Q 044324 90 YTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAF-LNFSM-KAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMD 167 (291)
Q Consensus 90 p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~-~~~~L-~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~d 167 (291)
..++-+.. +..+++.++++|++|++...-... ..+ +.+.. .|++ ....+.||+++ +++.+++|
T Consensus 63 ~~v~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t-~~r~~~~~~s~p~~---------~~~~~l~~~~~----~~i~sl~d 127 (287)
T 2vha_A 63 LQVKLIPI-TSQNRIPLLQNGTFDFECGSTTNN-VERQKQAAFSDTIF---------VVGTRLLTKKG----GDIKDFAD 127 (287)
T ss_dssp CEEEEEEC-CTTTHHHHHHTTSCSEECSSCBCC-HHHHTTCEEEEEEE---------EEEEEEEEETT----SSCCSGGG
T ss_pred ceEEEEEC-CHHHHHHHHHCCCeeEEeccccCC-cchhhcccccceee---------ecceEEEEECC----CCCCCHHH
Confidence 35565555 457899999999999985321111 111 12222 2322 23447788998 77899999
Q ss_pred CCCCcccC
Q 044324 168 FKGHKSCH 175 (291)
Q Consensus 168 LkGKksCH 175 (291)
|+||+.+.
T Consensus 128 L~g~~v~~ 135 (287)
T 2vha_A 128 LKGKAVVV 135 (287)
T ss_dssp GTTCEEEE
T ss_pred cCCCEEEE
Confidence 99999874
No 40
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=93.00 E-value=0.33 Score=41.77 Aligned_cols=77 Identities=17% Similarity=0.226 Sum_probs=47.6
Q ss_pred CcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEeecCCCceeEEEEEEecCccccCCCCCcccC
Q 044324 89 DYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMDF 168 (291)
Q Consensus 89 ~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dL 168 (291)
+.+++=+...+..++++++++|++|++. .-.+...+.-.+. +.+-| .....+.|++++ ++.+.+++||
T Consensus 70 g~~~~~~~~~~~~~~~~~l~~G~~D~~~---~~~~t~~r~~~~~--fs~p~----~~~~~~l~~~~~---~~~i~~~~dL 137 (267)
T 3mpk_A 70 GLDFEIIGVDTVEELIAKLRSGEADMAG---ALFVNSARESFLS--FSRPY----VRNGMVIVTRQD---PDAPVDADHL 137 (267)
T ss_dssp CCEEEEEEESSHHHHHHHHHHTSCSEEE---EEECCGGGTTTEE--ECSCS----EEECEEEEEESS---TTSCSSGGGC
T ss_pred CCeEEEEecCCHHHHHHHHHCCCccEEe---cccCChhhhcceE--echhh----ccCceEEEEECC---CCCCCCHHHH
Confidence 4567777777899999999999999974 2222222211111 11111 122346666765 1447899999
Q ss_pred CCCcccCCC
Q 044324 169 KGHKSCHGS 177 (291)
Q Consensus 169 kGKksCHtG 177 (291)
+|||.+-..
T Consensus 138 ~g~~i~v~~ 146 (267)
T 3mpk_A 138 DGRTVALVR 146 (267)
T ss_dssp TTCEEEEET
T ss_pred CCCEEEEeC
Confidence 999987653
No 41
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=92.67 E-value=0.084 Score=46.41 Aligned_cols=74 Identities=14% Similarity=0.080 Sum_probs=46.7
Q ss_pred CcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEeecCCCceeEEEEEEecCccccCCCCCcccC
Q 044324 89 DYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMDF 168 (291)
Q Consensus 89 ~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dL 168 (291)
+.+++-+... ..+.++++++|++|++..... +...+...+. +..-| .....+.|++++ +.+.+++||
T Consensus 96 g~~v~~~~~~-~~~~~~~l~~G~~D~~~~~~~--~~~~r~~~~~--~~~p~----~~~~~~l~~~~~----~~i~sl~dL 162 (291)
T 2yjp_A 96 PDKVEFVLTE-AANRVEYVRSGKVDLILANFT--QTPERAEAVD--FADPY----MKVALGVVSPKN----KPITDMAQL 162 (291)
T ss_dssp GGGEEEEECC-GGGHHHHHHTTSCSEECSSCB--CCHHHHTTEE--ECCCC----EEECEEEEEETT----SCCCSGGGG
T ss_pred CceEEEEEcc-HHHHHHHHhCCCeeEEEeCCC--CChHHHccce--eccCe----eecceEEEEeCC----CCCCCHHHh
Confidence 4456666654 689999999999999865322 1111111111 11111 123346788998 778999999
Q ss_pred CCCcccC
Q 044324 169 KGHKSCH 175 (291)
Q Consensus 169 kGKksCH 175 (291)
+|||.+-
T Consensus 163 ~gk~v~~ 169 (291)
T 2yjp_A 163 KDQTLLV 169 (291)
T ss_dssp TTSEEEE
T ss_pred CCCEEEE
Confidence 9999875
No 42
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=92.56 E-value=0.093 Score=45.42 Aligned_cols=74 Identities=15% Similarity=0.155 Sum_probs=47.0
Q ss_pred CCcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEeecCCCc-eeEEEEEEecCccccC--CCCC
Q 044324 88 EDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDHAQ-SYDAVAVINRKVCQEN--GGIN 164 (291)
Q Consensus 88 ~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y~~~~~-~Y~aVAVVkK~~~~~S--~~~~ 164 (291)
.+..++-+.. +..++++.+++|++|++...-. +...+.-.+. +. .+. ....+.+++++ + .+.+
T Consensus 61 ~g~~v~~~~~-~~~~~~~~l~~G~~D~~~~~~~--~t~~r~~~~~------fs-~p~~~~~~~l~~~~~----~~~~i~~ 126 (271)
T 2iee_A 61 LGLKVEFKEM-GIDGMLTAVNSGQVDAAANDID--VTKDREEKFA------FS-TPYKYSYGTAIVRKD----DLSGIKT 126 (271)
T ss_dssp TTCEEEEEEC-CSTTHHHHHHHTSSSEECSSCB--CCHHHHTTEE------EC-CCSEEEEEEEEECTT----TGGGCSS
T ss_pred cCCeEEEEEC-CHHHHHHHHHCCCcCEEEeCCc--CChhhccceE------Ee-ecceeCCeEEEEECC----CCCCCCC
Confidence 3456666665 7889999999999999875321 1111111111 11 111 23457778888 5 4789
Q ss_pred cccCCCCcccC
Q 044324 165 LMDFKGHKSCH 175 (291)
Q Consensus 165 l~dLkGKksCH 175 (291)
++||+|||.+-
T Consensus 127 ~~dL~g~~i~v 137 (271)
T 2iee_A 127 LKDLKGKKAAG 137 (271)
T ss_dssp GGGGTTCEEES
T ss_pred HHHhCCCEEEE
Confidence 99999999875
No 43
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=92.24 E-value=0.12 Score=42.64 Aligned_cols=74 Identities=16% Similarity=0.091 Sum_probs=46.3
Q ss_pred CCcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEeecCCCcee-EEEEEEecCccccCCCCCcc
Q 044324 88 EDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDHAQSY-DAVAVINRKVCQENGGINLM 166 (291)
Q Consensus 88 ~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y~~~~~~Y-~aVAVVkK~~~~~S~~~~l~ 166 (291)
.+.+++-+.. +..++++.+++|++|++..... +...+...+. +..-+ ... ..+.|++++ + +.+++
T Consensus 43 ~g~~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~--~~~~r~~~~~--~s~p~----~~~~~~~~~~~~~----~-~~~~~ 108 (229)
T 2y7i_A 43 MQAECSFTNQ-SFDSLIPSLRFKKFDAVIAGMD--MTPKREQQVS--FSQPY----YEGLSAVVVTRKG----A-YHTFA 108 (229)
T ss_dssp TTCEEEEEEC-CGGGHHHHHHTTSCSEECSSCB--CCHHHHTTSE--ECSCS----BCCCCEEEEEETT----S-CCSTG
T ss_pred hCCeEEEEEc-CHHHHHHHHhCCCceEEEecCc--cCHHHhccee--ecccc----ccCCcEEEEEeCC----C-CCCHH
Confidence 3456666653 7899999999999999863321 1111111111 11111 122 457788999 7 89999
Q ss_pred cCCCCcccC
Q 044324 167 DFKGHKSCH 175 (291)
Q Consensus 167 dLkGKksCH 175 (291)
||+|||.+.
T Consensus 109 dL~g~~v~~ 117 (229)
T 2y7i_A 109 DLKGKKVGL 117 (229)
T ss_dssp GGTTCEEEE
T ss_pred HHCCCEEEE
Confidence 999999765
No 44
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=91.87 E-value=0.24 Score=41.76 Aligned_cols=76 Identities=8% Similarity=-0.036 Sum_probs=45.1
Q ss_pred CcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEeecCCCceeEEEEEEecCccccCCCCCcccC
Q 044324 89 DYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMDF 168 (291)
Q Consensus 89 ~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dL 168 (291)
+.+++-+.. +..++++.+++|++|++.......-.....+...|++ .. ....+.|++++. +.+.+++||
T Consensus 69 g~~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~~~p~~----~~---~~~~~~~~~~~~---~~i~~~~dL 137 (268)
T 3qax_A 69 GKQLEVREF-AFDALILNLKKHRIDAILAGMSITPSRQKEIALLPYY----GD---EVQELMVVSKRS---LETPVLPLT 137 (268)
T ss_dssp TCEEEEEEC-CGGGHHHHHHHTSSSEECSCCBCCHHHHTTSEEEEEE----CC---CBCEEEEEEETT---SCSCCCCGG
T ss_pred CCeEEEEec-CHHHHHHHHhCCCccEEeecCccCHhHhcceeeecce----ec---ccceEEEEECCC---CCCCCHHHh
Confidence 446666666 8899999999999999864322111111112112322 10 112355566651 458899999
Q ss_pred CCCcccC
Q 044324 169 KGHKSCH 175 (291)
Q Consensus 169 kGKksCH 175 (291)
+|||.+-
T Consensus 138 ~g~~i~~ 144 (268)
T 3qax_A 138 QYSSVAV 144 (268)
T ss_dssp GSSCEEE
T ss_pred CCCEEEE
Confidence 9999874
No 45
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=91.80 E-value=0.097 Score=43.87 Aligned_cols=74 Identities=16% Similarity=0.039 Sum_probs=45.9
Q ss_pred cceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEeecCCCceeEEEEEEecCccccCCCCCcccCC
Q 044324 90 YTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMDFK 169 (291)
Q Consensus 90 p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dLk 169 (291)
..++-+.. +..+.++++++|++|++...... ...+...+. ...-| .....+.||+++ +++.+++||+
T Consensus 81 ~~v~~~~~-~~~~~~~~l~~g~~D~~~~~~~~--~~~~~~~~~--~~~p~----~~~~~~~~~~~~----~~i~~~~dL~ 147 (259)
T 2v25_A 81 KKIKLVAV-NAKTRGPLLDNGSVDAVIATFTI--TPERKRIYN--FSEPY----YQDAIGLLVLKE----KKYKSLADMK 147 (259)
T ss_dssp TSEEEEEC-CTTTHHHHHHTTSCSEECSSCBC--CHHHHTTEE--ECSCS----EEEEEEEEEEGG----GCCCSGGGCT
T ss_pred cceEEEEc-CHHHHHHHHhCCCCCEEEecCcc--CHHHHhcCc--ccccc----eeCceEEEEeCC----CCCCCHHHhC
Confidence 35665555 45889999999999998643211 111111111 00001 123447788888 7789999999
Q ss_pred CCcccCC
Q 044324 170 GHKSCHG 176 (291)
Q Consensus 170 GKksCHt 176 (291)
||+....
T Consensus 148 g~~i~~~ 154 (259)
T 2v25_A 148 GANIGVA 154 (259)
T ss_dssp TCEEEEE
T ss_pred CCEEEEe
Confidence 9998763
No 46
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=91.56 E-value=0.12 Score=45.37 Aligned_cols=75 Identities=16% Similarity=0.202 Sum_probs=47.2
Q ss_pred CcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEeecCCCceeEEEEEEecCccccCCCCCcccC
Q 044324 89 DYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMDF 168 (291)
Q Consensus 89 ~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dL 168 (291)
+.+++-+... ..+.++++++|++|++...-. .|...+...+. +..-| .....+.|++++ +++.+++||
T Consensus 95 G~~v~~~~~~-~~~~~~~l~~G~~D~~~~~~~-~~t~~r~~~~~--~~~p~----~~~~~~l~~~~~----~~i~s~~dL 162 (283)
T 2yln_A 95 GVKVEFKETQ-WDSMMAGLKAGRFDVVANQVG-LTSPERQATFD--KSEPY----SWSGAVLVAHND----SNIKSIADI 162 (283)
T ss_dssp TCEEEEEECC-GGGHHHHHHHTSCSEECSSCC-CCSHHHHHHEE--ECSCS----EEECEEEEEETT----CSCCSGGGC
T ss_pred CCceEEEECC-HHHHHHHHHCCCcCEEEecCc-cCChhhhcceE--eccCe----eeecEEEEEECC----CCCCCHHHh
Confidence 4567766665 899999999999999864322 11111111111 10001 022346778888 778999999
Q ss_pred CCCcccC
Q 044324 169 KGHKSCH 175 (291)
Q Consensus 169 kGKksCH 175 (291)
+|||.+-
T Consensus 163 ~G~~v~v 169 (283)
T 2yln_A 163 KGVKTAQ 169 (283)
T ss_dssp TTSEEEE
T ss_pred CCCEEEE
Confidence 9999874
No 47
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=90.28 E-value=0.3 Score=42.57 Aligned_cols=74 Identities=12% Similarity=0.038 Sum_probs=45.7
Q ss_pred CcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEeecCCCceeEEEEEEecCccccCCCCCcccC
Q 044324 89 DYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMDF 168 (291)
Q Consensus 89 ~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dL 168 (291)
+.+++-+.. +..++++.+++|++|++..... +...+...+. +.+-| .....+.|++++ +++.+++||
T Consensus 85 g~~~~~~~~-~~~~~~~~l~~G~~D~~~~~~~--~~~~r~~~~~--~s~p~----~~~~~~~~~~~~----~~i~~~~dL 151 (292)
T 1xt8_A 85 ENKVQFVLV-EAANRVEFLKSNKVDIILANFT--QTPQRAEQVD--FCSPY----MKVALGVAVPKD----SNITSVEDL 151 (292)
T ss_dssp TTCEEEEEC-CGGGHHHHHHTTSCSEECSSCB--CCHHHHTTEE--ECCCC----EEEEEEEEEETT----CCCCSSGGG
T ss_pred CceEEEEEc-CHHHHHHHHhCCCeeEEeecCC--CCcchhccee--eeccc----eecceEEEEECC----CCCCCHHHh
Confidence 445666655 3688999999999999853322 1111111111 11101 123456788888 778999999
Q ss_pred CCCcccC
Q 044324 169 KGHKSCH 175 (291)
Q Consensus 169 kGKksCH 175 (291)
+|||.+-
T Consensus 152 ~g~~i~~ 158 (292)
T 1xt8_A 152 KDKTLLL 158 (292)
T ss_dssp TTSEEEE
T ss_pred CCCEEEE
Confidence 9999865
No 48
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=90.22 E-value=0.1 Score=43.44 Aligned_cols=74 Identities=12% Similarity=0.045 Sum_probs=44.9
Q ss_pred CcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEeecCCCceeEEEEEEecCccccCCCC-Cccc
Q 044324 89 DYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGI-NLMD 167 (291)
Q Consensus 89 ~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~-~l~d 167 (291)
+.+++-+.. +...+++++++|++|++...-. +...+.-.+. +.+-|. ....+.|++++ +++. +++|
T Consensus 42 g~~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~--~t~~r~~~~~--~s~p~~----~~~~~l~~~~~----~~~~~~~~d 108 (239)
T 1lst_A 42 QVKCTWVAS-DFDALIPSLKAKKIDAIISSLS--ITDKRQQEIA--FSDKLY----AADSRLIAAKG----SPIQPTLES 108 (239)
T ss_dssp TCEEEEEEC-CGGGHHHHHHTTSCSEECSSCB--CCHHHHHHCE--ECSCSB----CCCEEEEEETT----CCCCSSHHH
T ss_pred CCeEEEEeC-CHHHHHHHHhCCCCCEEEECcC--cCHHHhhcee--ecccce----eCceEEEEeCC----CCCCCCHHH
Confidence 445665554 7899999999999999864211 1111100110 111111 22446788888 6665 8999
Q ss_pred CCCCcccC
Q 044324 168 FKGHKSCH 175 (291)
Q Consensus 168 LkGKksCH 175 (291)
|+||+.+.
T Consensus 109 L~g~~v~~ 116 (239)
T 1lst_A 109 LKGKHVGV 116 (239)
T ss_dssp HTTCEEEE
T ss_pred hCCCEEEE
Confidence 99999775
No 49
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=89.72 E-value=0.3 Score=41.78 Aligned_cols=132 Identities=12% Similarity=-0.011 Sum_probs=71.2
Q ss_pred CcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEeecCCCceeEEEEEEecCccccCCCCCcccC
Q 044324 89 DYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMDF 168 (291)
Q Consensus 89 ~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dL 168 (291)
+.+++-+.. +..+.++.+++|++|++...-. +...+.-.+. +.+-| .....+.|++++. .+.+.+++||
T Consensus 67 g~~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~--~t~~r~~~~~--fs~p~----~~~~~~~~~~~~~--~~~i~~~~dL 135 (259)
T 4dz1_A 67 HCKLNITEY-AWDGMLGAVASGQADVAFSGIS--ITDKRKKVID--FSEPY----YINSFYLVSMANH--KITLNNLNEL 135 (259)
T ss_dssp TCEEEEEEC-CHHHHHHHHHHTSSSEEEEEEE--CCHHHHTTEE--ECCCS----EEEEEEEEEETTS--CCCCCSGGGG
T ss_pred CCeEEEEEc-CHHHHHHHHhCCCCCEEEECCc--CCHHHhhccc--cccch----hhCceEEEEEcCC--CCCCCCHHHh
Confidence 456776666 8999999999999999653211 1111111111 10101 0223345566541 1357899999
Q ss_pred CCCcccCCCCCCCCCchhHHHHHH-hCCCCCCCCCCchhhhhhccccccCCCCCCCCCCCCcCCCCCCCCCCCCCCccCc
Q 044324 169 KGHKSCHGSYSTAAGWNYPVNHIK-GSTPTFDSGKISDIEIASSFFSEVCAPGEFEGTGMCSGCGIENGSCHSNSLYFGD 247 (291)
Q Consensus 169 kGKksCHtG~~~taGW~iPvg~L~-~~~~~c~~~~~~~~~~~s~FFs~SCvPG~~~~~~LC~lC~g~~~~C~~~e~Y~Gy 247 (291)
+|||.+-.. + + ....-+..+. ..|... . . ....|..+
T Consensus 136 ~g~~v~v~~-g-~-~~~~~l~~~~~~~g~~~------~--~-------------------------------~~~~~~~~ 173 (259)
T 4dz1_A 136 NKYSIGYPR-G-M-AYSDLIKNDLEPKGYYS------L--S-------------------------------KVKLYPTY 173 (259)
T ss_dssp GGSCEEEET-T-S-THHHHHHHHTGGGTSCC------G--G-------------------------------GCEEESSH
T ss_pred CCCEEEEeC-C-c-HHHHHHHHhcccccccc------c--c-------------------------------eeEecCCH
Confidence 999987532 1 1 1111111111 111100 0 0 01224456
Q ss_pred cccccccccCCCcEEEEechhhhhhh
Q 044324 248 SGAFRCLVEELGDIAFVRGDTALLYS 273 (291)
Q Consensus 248 ~GAlrCL~eg~GDVAFVk~~tV~~~~ 273 (291)
..+++=|..|.-|++++....+..+.
T Consensus 174 ~~~~~~l~~G~vDa~~~~~~~~~~~~ 199 (259)
T 4dz1_A 174 NETMADLKNGNLDLAFIEEPVYFTFK 199 (259)
T ss_dssp HHHHHHHHHTSCSEEEEEHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEecHHHHHHHh
Confidence 67888899999999999888765554
No 50
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=89.55 E-value=0.29 Score=41.24 Aligned_cols=76 Identities=11% Similarity=0.041 Sum_probs=44.0
Q ss_pred CcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEeecCCCceeEEEEEEecCccccCCCCCcccC
Q 044324 89 DYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMDF 168 (291)
Q Consensus 89 ~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dL 168 (291)
+.+++-+.. +..++++.+++|++|++...-... ..+...+. +.+-+. ....+.+++++. .+.+.+++||
T Consensus 80 g~~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~--~~r~~~~~--~s~p~~----~~~~~~~~~~~~--~~~i~~~~dL 148 (269)
T 4i62_A 80 GVELELSPM-SFDNVLASVQSGKADLAISGVSKT--DERSKVFD--FSTPYY----TAKNKLIVKKSD--LATYQSVNDL 148 (269)
T ss_dssp TCEEEEEEC-CHHHHHHHHHTTSCSEECSSCBCC--HHHHTTEE--ECSCCE----ECCEEEEEEGGG--TTTCSSGGGG
T ss_pred CCceEEEEc-CHHHHHHHHhCCCccEEecCCcCC--HhHhhcee--cccchh----hcceEEEEECCc--cccccCHHHh
Confidence 456777776 899999999999999976432211 11111111 111010 112355667651 1357899999
Q ss_pred CCCcccC
Q 044324 169 KGHKSCH 175 (291)
Q Consensus 169 kGKksCH 175 (291)
+|||.+.
T Consensus 149 ~g~~i~~ 155 (269)
T 4i62_A 149 AQKKVGA 155 (269)
T ss_dssp C-CEEEE
T ss_pred CCCeEEE
Confidence 9999875
No 51
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=89.29 E-value=0.81 Score=40.65 Aligned_cols=98 Identities=7% Similarity=-0.038 Sum_probs=64.8
Q ss_pred hhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeee---cccCCcEEEEEEeecCCCceeEEEEEEecCccccC
Q 044324 84 ISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTA---FLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQEN 160 (291)
Q Consensus 84 a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A---~~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S 160 (291)
.+...+..++-+.-+|+.++++++..|+.|+..+.....+.+ .+.+.|++|..-... +...| + +
T Consensus 24 ~~~~~Gl~ve~~~f~d~~~~n~AL~~G~iD~n~fq~~~~l~~~~~~~g~~l~~v~~~~~~--p~g~y-------s----~ 90 (241)
T 1xs5_A 24 EVKKQHIELRIVEFTNYVALNEAVMRGDILMNFFQHVPHMQQFNQEHNGDLVSVGNVHVE--PLALY-------S----R 90 (241)
T ss_dssp HHHTTTEEEEEEECSCHHHHHHHHHHTSSSEEEEEEHHHHHHHHHHHTCCEEEEEEEEEC--CCEEE-------C----S
T ss_pred HHHHcCCeEEEEEcCChHHHHHHHHcCCCCEeccCCHHHHHHHHHHCCCCEEEEEeeccc--cceee-------c----C
Confidence 344456889999999999999999999999998755433322 235677766532221 22222 2 3
Q ss_pred CCCCcccC-CCCcccCCCCCCCCCchhHHHHHHhCCC
Q 044324 161 GGINLMDF-KGHKSCHGSYSTAAGWNYPVNHIKGSTP 196 (291)
Q Consensus 161 ~~~~l~dL-kGKksCHtG~~~taGW~iPvg~L~~~~~ 196 (291)
++.+++|| +|||...+.- ++.-..-+..|.+.|+
T Consensus 91 kiksl~dL~~G~~Iaip~d--~sn~~ral~lL~~aGl 125 (241)
T 1xs5_A 91 TYRHVSDFPAGAVIAIPND--SSNEARALRLLEAAGF 125 (241)
T ss_dssp SCCSGGGCCTTCEEEEECS--HHHHHHHHHHHHHTTS
T ss_pred CCCChHHcCCCCEEEEeCC--CchHHHHHHHHHHCCC
Confidence 48999999 9999988663 2222333445666774
No 52
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=89.26 E-value=0.17 Score=43.98 Aligned_cols=88 Identities=9% Similarity=-0.016 Sum_probs=50.6
Q ss_pred cceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEeecCCCceeEEEEEEecCccccCCCCCcccCC
Q 044324 90 YTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMDFK 169 (291)
Q Consensus 90 p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dLk 169 (291)
..++- ...+..+.++++..|++|+..++......+... + .++.-.... +..+-.+ +|.++ + ++|||
T Consensus 30 ~~v~~-~~~~~~~~~~al~~G~~D~~~~~~~~~~~~~~~--~-~i~~~~~~~-~~~~~~~-lv~~~----~----~~dLk 95 (272)
T 2czl_A 30 VPLEP-VLEDVETLNRWALEGRLPLTKLSYAAYAQVRDR--Y-VALRSGGAL-GRGVGPL-VVARG----P----LQALE 95 (272)
T ss_dssp SCEEE-EECCHHHHHHHHHTTCCSEEEEEHHHHTTCTTT--E-EECSSSCEE-ESSCCCE-EEESS----C----CSCCT
T ss_pred ceeEE-ecCCHHHHHHHHHcCCCCEEEecHHHHHhhhCc--e-EEeeccccc-CCCCceE-EEECC----C----hHHhC
Confidence 44555 566789999999999999998865432222222 2 222100000 0011223 66666 3 89999
Q ss_pred CCcccCCCCCCCCCchhHHHHHHh
Q 044324 170 GHKSCHGSYSTAAGWNYPVNHIKG 193 (291)
Q Consensus 170 GKksCHtG~~~taGW~iPvg~L~~ 193 (291)
|||...++.+. .++.+. ..|++
T Consensus 96 Gk~Ia~~~~~~-~~~~ll-~~ll~ 117 (272)
T 2czl_A 96 GLRVAVPGRHT-TAYFLL-SLYAQ 117 (272)
T ss_dssp TCEEEESCTTS-HHHHHH-HHHCS
T ss_pred CCEEEeCCCCc-hHHHHH-HHHhc
Confidence 99999987543 345543 33433
No 53
>2nxo_A Hypothetical protein SCO4506; PFAM, DUF178, NYSGXRC, 10093F, PSI-2, structural genomics, protein structure initiative; 2.04A {Streptomyces coelicolor} SCOP: c.94.1.1
Probab=87.77 E-value=0.28 Score=43.82 Aligned_cols=91 Identities=13% Similarity=0.132 Sum_probs=52.2
Q ss_pred eEEEecCCHHHHHHHHhccCCcEEEeCCceeeeec-ccCCcEEEEEEeecCCCceeEEEEEEecCccccCCCCCcccCCC
Q 044324 92 WKCVKRDTAQECLDSARKGEADIINLEAGLAYTAF-LNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMDFKG 170 (291)
Q Consensus 92 l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~-~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dLkG 170 (291)
++-+ ..+..++++++..|++|+..+.... |... ..+.+.|.+.-. ..+. -.+|.||.++ + ++||||
T Consensus 35 ~~~~-~~~~~~l~~al~~G~iDia~~~~~~-~~~~~~~~~il~~~~~~-~~g~--~~sv~lv~~~----~----i~DLkG 101 (291)
T 2nxo_A 35 FELT-KDTPEKLSEQLVRGDLDIGPVTLVE-FLKNADDLVAFPDIAVG-CDGP--VMSCVIVSQV----P----LDRLDG 101 (291)
T ss_dssp CEEE-EECHHHHHHHHHTTSCSEEEEEHHH-HHHTGGGEEEEEEEEEE-ESSC--CSSEEEEESS----C----TTSCSS
T ss_pred eEEE-ECCHHHHHHHHHcCCCCEeehhHHH-HHhCcccEEEcCCcccc-ccCC--ceEEEEEeCC----C----HHHhCC
Confidence 3434 3567889999999999999876432 3322 223334433211 1111 1234566655 3 489999
Q ss_pred CcccCCCCCCCCCchhHHHHHHhC-CC
Q 044324 171 HKSCHGSYSTAAGWNYPVNHIKGS-TP 196 (291)
Q Consensus 171 KksCHtG~~~taGW~iPvg~L~~~-~~ 196 (291)
||..-++.+.++ ..+--..|.+. |+
T Consensus 102 KkIav~~~s~t~-~~ll~~ll~~~~Gl 127 (291)
T 2nxo_A 102 ARVALGSTSRTS-VRLAQLLLSERFGV 127 (291)
T ss_dssp SEEEEETTCSHH-HHHHHHHHHHTSCC
T ss_pred CEEEeCCCChHH-HHHHHHHHHHhhCC
Confidence 999998876553 33323333343 64
No 54
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=87.55 E-value=0.5 Score=40.14 Aligned_cols=65 Identities=12% Similarity=0.028 Sum_probs=39.9
Q ss_pred CHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEeecCCCceeEEEEEEecCccccCCCCCcccCCCCcccC
Q 044324 99 TAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMDFKGHKSCH 175 (291)
Q Consensus 99 s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dLkGKksCH 175 (291)
+....+..+++|++|++...-. +...+.-.+. +.+-| .....+.||+++ +++.+++||+||+.+.
T Consensus 70 ~~~~~~~~l~~g~~D~~~~~~~--~t~~R~~~~~--fs~p~----~~~~~~~~~~~~----~~i~~~~dL~g~~~~~ 134 (263)
T 1mqi_A 70 IWNGMVGELVYGKADIAIAPLT--ITLVREEVID--FSKPF----MSLGISIMIKKG----TPIESAEDLSKQTEIA 134 (263)
T ss_dssp CBCHHHHHHHTTSCSEECSSCB--CCHHHHTTEE--ECSCS----EEECEEEEEETT----CSCCSHHHHHTCSSSE
T ss_pred CcHHHHHHHHcCCcCEEEEeeE--ecHHHHhhcc--cccce----ecccEEEEEcCc----cccCCHHHHhcccCee
Confidence 6789999999999999862211 1111111111 10101 022346778888 7789999999999654
No 55
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=87.36 E-value=0.76 Score=40.85 Aligned_cols=105 Identities=10% Similarity=0.070 Sum_probs=58.6
Q ss_pred CceEEEecc-chHHHHHHHHHHhhcCCCcceEEEe-cCCHHHHHHHHhccCCcEEEe---------CC---------cee
Q 044324 63 ATIKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVK-RDTAQECLDSARKGEADIINL---------EA---------GLA 122 (291)
Q Consensus 63 ~~vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~-~~s~~dCm~~I~~g~ADiv~l---------d~---------~~i 122 (291)
.+||+=... .|..-=..|....+...+.+++-+. -.+...++++|.+|++|+..- .+ +++
T Consensus 6 ~~i~ig~~~~~~~~~~~~~~~~~le~~G~~Ve~~~~~g~~~~~~~al~~G~iD~~~eytGt~~~~~~~~~~~~~~~~~~~ 85 (275)
T 1sw5_A 6 ERVVIGSKPFNEQYILANMIAILLEENGYKAEVKEGLGGTLVNYEALKRNDIQLYVEYTGTAYNVILRKQPPELWDQQYI 85 (275)
T ss_dssp CCEEECCCSSHHHHHHHHHHHHHHHHTTCCEEECTTCCSHHHHHHHHHHTSSSEEEEEHHHHHHTTSCCCCCSSCCHHHH
T ss_pred CCEEEEcCCCcHHHHHHHHHHHHHHHcCCcEEEEeCCCchHHHHHHHHcCCCcEEEeehhhHHHHhcCCCCccCCCHHHH
Confidence 356666665 4432222232334444466777776 346899999999999999862 11 114
Q ss_pred eeecc-----cCCcEEEEEEeecCCCceeEEEEEEecCccccCCCCCcccCCCCc
Q 044324 123 YTAFL-----NFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMDFKGHK 172 (291)
Q Consensus 123 y~A~~-----~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dLkGKk 172 (291)
|.+-+ .++|+-+-.-.+. ..++++| +++..+..++.+++||+||+
T Consensus 86 ~~~~~~~~~~~~~l~~l~~~~~~----~~~~l~V-~~~~a~~~~i~si~DL~g~~ 135 (275)
T 1sw5_A 86 FDEVKKGLLEADGVVVAAKLGFR----DDYALAV-RADWAEENGVEKISDLAEFA 135 (275)
T ss_dssp HHHHHHHHHHHHCCEEEEEEEEE----CCEEEEE-EHHHHHHHTCCBGGGGTTTG
T ss_pred HHHHHHHhhhcCCeEEeccCCCC----CeeEEEE-eHHHHHHcCCCcHHHHHhhh
Confidence 43211 1356533322121 1255555 66510001699999999994
No 56
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=86.50 E-value=0.33 Score=40.30 Aligned_cols=74 Identities=7% Similarity=-0.088 Sum_probs=44.1
Q ss_pred CCcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCc-EEEEEEeecCCCceeEEEEEEecCccccC--CCCC
Q 044324 88 EDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSM-KAIANEVYCDHAQSYDAVAVINRKVCQEN--GGIN 164 (291)
Q Consensus 88 ~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L-~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S--~~~~ 164 (291)
.+.+++=+.. +...+++.+++|++|++...-...-...+.+.. .|++ ....+.|++++ + .+.+
T Consensus 52 ~g~~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~~~fs~p~~---------~~~~~~~~~~~----~~~~i~~ 117 (239)
T 3kbr_A 52 LGAKLVVVPT-SWPNLMRDFADDRFDIAMSGISINLERQRQAYFSIPYL---------RDGKTPITLCS----EEARFQT 117 (239)
T ss_dssp TTCEEEEEEC-CTTTHHHHHHTTCCSEECSSCBCCHHHHTTCEECSCSE---------EECEEEEEEGG----GGGGGSS
T ss_pred HCCceEEEEe-CHHHHHHHHHCCCcCEEEeCCcCCHHHcCccccchHHh---------ccCcEEEEECC----cccccCC
Confidence 3455665654 889999999999999985432211110011111 0111 22335677776 3 4789
Q ss_pred cccCC--CCcccC
Q 044324 165 LMDFK--GHKSCH 175 (291)
Q Consensus 165 l~dLk--GKksCH 175 (291)
++||+ ||+.+-
T Consensus 118 ~~dL~~~g~~v~~ 130 (239)
T 3kbr_A 118 LEQIDQPGVTAIV 130 (239)
T ss_dssp HHHHSSTTCEEEE
T ss_pred HHHhcCCCcEEEE
Confidence 99999 778764
No 57
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=86.16 E-value=0.23 Score=43.39 Aligned_cols=76 Identities=17% Similarity=0.184 Sum_probs=46.1
Q ss_pred CcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEE--EEeecCCCceeEEEEEEecCccccCCCCCcc
Q 044324 89 DYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIA--NEVYCDHAQSYDAVAVINRKVCQENGGINLM 166 (291)
Q Consensus 89 ~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl--~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~ 166 (291)
+.+++=+. .+..+.++++..|++|++.++. ..+.... -++ +++ .-.+.. .+..| ||+++ + +
T Consensus 37 Gl~ve~~~-~~~~~~~~~l~~G~~D~~~~~~-~~~~~~~-~~~-~~~~~~~~~~~---~~~~v-lv~~~----~-----~ 99 (280)
T 1zbm_A 37 WLEIEHVI-EDIETLNRKAFNAEYEVTAISA-HAYALLD-DKY-RILSAGASVGD---GYGPV-VVAKS----E-----I 99 (280)
T ss_dssp SCEEEEEE-CCHHHHHHHGGGTCCSEEEEEH-HHHTTST-TTE-EECSSCCEEES---SCCCE-EEESS----C-----C
T ss_pred CceEEEEe-CCHHHHHHHHHcCCCCEEEECH-HHHHHhc-CCC-cEEeeccccCC---CeeEE-EEEcC----c-----h
Confidence 44556444 4789999999999999998732 3332211 122 222 111111 11223 67787 4 8
Q ss_pred cCCCCcccCCCCCCC
Q 044324 167 DFKGHKSCHGSYSTA 181 (291)
Q Consensus 167 dLkGKksCHtG~~~t 181 (291)
||||||...++.+++
T Consensus 100 DLkGK~Iav~~~~s~ 114 (280)
T 1zbm_A 100 SLDGKRIAVPGRYTT 114 (280)
T ss_dssp CCTTCEEEESCTTSH
T ss_pred hcCCCEEEecCCCcH
Confidence 999999998866554
No 58
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=85.91 E-value=1.3 Score=39.61 Aligned_cols=83 Identities=7% Similarity=-0.012 Sum_probs=54.2
Q ss_pred CcceEEEecCC-HHHHHHHHhccCCcEEEeCCceeeeec-ccCC-cEEEEEEeecCCCceeEEEEEEecCccccC-CCCC
Q 044324 89 DYTWKCVKRDT-AQECLDSARKGEADIINLEAGLAYTAF-LNFS-MKAIANEVYCDHAQSYDAVAVINRKVCQEN-GGIN 164 (291)
Q Consensus 89 ~p~l~CV~~~s-~~dCm~~I~~g~ADiv~ld~~~iy~A~-~~~~-L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S-~~~~ 164 (291)
+..++-+...+ ....++++..|++|++......+..+. +... ++.|.. .+.. . ...+.||+++ + ++.+
T Consensus 43 Gl~V~~~~~~~g~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~~v~~-~~~~-~--~~~~i~v~~d----s~~i~s 114 (321)
T 2x7q_A 43 DLSIEFVKVPEGSGRLINLLNSNEVDIAIGLTEAFIADIAKGNENIHVLDT-YVKS-P--LLWAVSTGSN----RDDVTD 114 (321)
T ss_dssp TCCEEEEECTTCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTTCTTEEEEEE-EECS-C--CEEEEEEESS----CTTCSS
T ss_pred CceEEEEECCCCHHHHHHHHHcCCccEEecCcHHHHHHHHCCCCcEEEEEE-ecCC-C--cceEEEECCC----CCCCCC
Confidence 45677776544 345899999999999987665444332 3334 555432 2221 1 2234567888 7 8999
Q ss_pred cccCCCCcccCCCCCCC
Q 044324 165 LMDFKGHKSCHGSYSTA 181 (291)
Q Consensus 165 l~dLkGKksCHtG~~~t 181 (291)
++|| ||...++.+++
T Consensus 115 ~~DL--K~i~~~~~gs~ 129 (321)
T 2x7q_A 115 AKQL--KRIGVSRIGSG 129 (321)
T ss_dssp GGGC--CEEEESSTTSH
T ss_pred hHHc--ceEEeeCCCcH
Confidence 9999 89888776544
No 59
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=85.48 E-value=0.35 Score=40.97 Aligned_cols=64 Identities=6% Similarity=-0.033 Sum_probs=38.9
Q ss_pred cCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEeecCCCceeEEEEEEecCccccCCCCCcccCCCCc
Q 044324 97 RDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMDFKGHK 172 (291)
Q Consensus 97 ~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dLkGKk 172 (291)
..+-.+++..+++|++|++.-.-. +...+.-.+. +.+-| .....+.|++++ +++.+++||+||+
T Consensus 68 ~~~~~~~~~~l~~g~~D~~~~~~~--~t~eR~~~~~--fs~py----~~~~~~~~~~~~----~~i~~~~dL~g~~ 131 (259)
T 3g3k_A 68 NGQWNGMVRELIDHKADLAVAPLA--ITYVREEVID--FSKPF----MTLGISILYRKG----TPIDSADDLAKQT 131 (259)
T ss_dssp TCCBCHHHHHHHTTSCSEECSSCB--CCHHHHTTEE--ECSCS----EEECEEEEEESS----SSCCSHHHHHTCS
T ss_pred CCcchHHHHHHhcCcccEEEeeeE--ecccccceEe--eeeee----eeCCEEEEEeCC----ccccCHHHhccCC
Confidence 357899999999999999853211 1111111111 10101 022346678888 7788999999998
No 60
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=82.49 E-value=1.6 Score=39.82 Aligned_cols=98 Identities=6% Similarity=0.055 Sum_probs=63.8
Q ss_pred hhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeec---c-cCCcEEEEEEeecCCCceeEEEEEEecCcccc
Q 044324 84 ISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAF---L-NFSMKAIANEVYCDHAQSYDAVAVINRKVCQE 159 (291)
Q Consensus 84 a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~---~-~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~ 159 (291)
.+...+..++-+.-.++.+.++++..|++|+..+.....+.+. + .+.|+.|..- +.. +.. +. +
T Consensus 59 ~~~~~G~~Ve~~~f~~~~~~~~AL~~G~iD~~~~~~~~~l~~~~~~~~g~~l~~v~~~-~~~-p~g-----~y--s---- 125 (295)
T 1p99_A 59 LAKKDDIDVEIKHFSDYNLPNKALNDGDIDMNAFQHFAFLDQYKKAHKGTKISALSTT-VLA-PLG-----IY--S---- 125 (295)
T ss_dssp HHGGGTCCEEEEECSSTTSHHHHHHTTSSSEEEEEEHHHHHHHHHHCTTCCEEEEEEE-EEC-CCE-----EE--C----
T ss_pred HHHHcCCeEEEEEeCChHHHHHHHHcCCCCEEccCCHHHHHHHHHhcCCCCEEEEEee-ccc-cce-----ee--c----
Confidence 3434467899999999999999999999999987555443321 2 4677766433 321 211 21 2
Q ss_pred CCCCCcccC-CCCcccCCCCCCCCCchhHHHHHHhCCC
Q 044324 160 NGGINLMDF-KGHKSCHGSYSTAAGWNYPVNHIKGSTP 196 (291)
Q Consensus 160 S~~~~l~dL-kGKksCHtG~~~taGW~iPvg~L~~~~~ 196 (291)
+++.+++|| +|||...+.-.+..+. -+..|.+.|+
T Consensus 126 ~~iksl~DL~~Gk~IAip~~~s~~~~--~l~lL~~~Gl 161 (295)
T 1p99_A 126 DKIKDVKKVKDGAKVVIPNDVSNQAR--ALKLLEAAGL 161 (295)
T ss_dssp SSCSCGGGCCTTCEEEEECSHHHHHH--HHHHHHHTTS
T ss_pred CCCCChHHcCCCCEEEecCCCcHHHH--HHHHHHHCCC
Confidence 348999999 9999988764333222 2344556664
No 61
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=81.28 E-value=1.8 Score=36.09 Aligned_cols=75 Identities=11% Similarity=0.059 Sum_probs=43.3
Q ss_pred CcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCc-EEEEEEeecCCCceeEEEEEEecCccccCCCCCccc
Q 044324 89 DYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSM-KAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMD 167 (291)
Q Consensus 89 ~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L-~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~d 167 (291)
+.+++-+. .+...+++++++|++|++...-...-...+.+.. .|++ ....+.|++++.. +.+.+++|
T Consensus 43 g~~~~~~~-~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~~~~s~p~~---------~~~~~~~~~~~~~--~~i~~~~d 110 (245)
T 3k4u_A 43 GVKLKLVP-TSWDGLIPGLVTEKFDIIISGMTISQERNLRVNFVEPYI---------VVGQSLLVKKGLE--KGVKSYKD 110 (245)
T ss_dssp TCEEEEEE-CCGGGHHHHHHTTSCSEECSSCBCCHHHHTTSEECSCSE---------EECEEEEEETTTT--TTCCSGGG
T ss_pred CCeEEEEE-ccHHHHHHHHhCCCcCEEEecCcCCHHHHhhcCcchhhh---------eeceEEEEECCcc--cccCCHHH
Confidence 44555555 3789999999999999975432111000011111 1221 2233566777610 34789999
Q ss_pred CC--CCcccC
Q 044324 168 FK--GHKSCH 175 (291)
Q Consensus 168 Lk--GKksCH 175 (291)
|+ ||+.+-
T Consensus 111 L~~~g~~i~v 120 (245)
T 3k4u_A 111 LDKPELTLVT 120 (245)
T ss_dssp GCCSSCEEEE
T ss_pred hccCCcEEEE
Confidence 99 888765
No 62
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=80.80 E-value=0.92 Score=38.10 Aligned_cols=74 Identities=8% Similarity=-0.056 Sum_probs=44.0
Q ss_pred Ccc-eEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEeecCCCceeEEEEEEecCccccCC--CCCc
Q 044324 89 DYT-WKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENG--GINL 165 (291)
Q Consensus 89 ~p~-l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~--~~~l 165 (291)
+.. ++=+.. +...+++.+++|++|++...-.. ...+.-.+. +.+-| .....+.|++++ ++ +.++
T Consensus 50 g~~~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~--t~~r~~~~~--~s~p~----~~~~~~~~~~~~----~~~~i~~~ 116 (257)
T 2q88_A 50 GVADVVASIS-EYGAMIPGLQAGRHDAITAGLFM--KPERCAAVA--YSQPI----LCDAEAFALKKG----NPLGLKSY 116 (257)
T ss_dssp TCCEEEEEEC-CGGGHHHHHHTTSCSEECSCCBC--CHHHHTTSE--ECSCC----CEECEEEEEETT----CTTCCCBH
T ss_pred CCCeeeEEeC-CHHHHHHHHHCCCcCEEEecccC--CHHHHhccc--cccch----hcCceEEEEECC----CccCCCCH
Confidence 444 655554 58899999999999998633111 111111111 00001 122346778888 53 7899
Q ss_pred ccCC---CCcccC
Q 044324 166 MDFK---GHKSCH 175 (291)
Q Consensus 166 ~dLk---GKksCH 175 (291)
+||+ ||+.+.
T Consensus 117 ~dL~~~~g~~i~~ 129 (257)
T 2q88_A 117 KDIADNPDAKIGA 129 (257)
T ss_dssp HHHHHCTTCCEEE
T ss_pred HHHhccCCceEEE
Confidence 9999 999864
No 63
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=80.12 E-value=3 Score=39.26 Aligned_cols=100 Identities=8% Similarity=-0.055 Sum_probs=62.9
Q ss_pred CCc-ceEEEecCCHHHHHHHHhccC----CcEEEeCCceeeee-------cccCCcEEEEEEeecCCCceeEEEEEEecC
Q 044324 88 EDY-TWKCVKRDTAQECLDSARKGE----ADIINLEAGLAYTA-------FLNFSMKAIANEVYCDHAQSYDAVAVINRK 155 (291)
Q Consensus 88 ~~p-~l~CV~~~s~~dCm~~I~~g~----ADiv~ld~~~iy~A-------~~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~ 155 (291)
.+. .++-+...+..+-++++..|+ +|++.+.....|.. .+...++-+.. .+.. ..+ .+|+++
T Consensus 60 ~Gl~~Ve~~~~~~~~~~~~al~~G~~~~giD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----g~~-i~v~~~ 133 (417)
T 2g29_A 60 YGMPDVEVLKQASWGTTRDNLVLGSASGGIDGAHILTPMPYLITMGTVTDGKPTPMYILAR-LNVN----GQG-IQLGNN 133 (417)
T ss_dssp TTCTTCEEEECSCHHHHHHHHHHCGGGTSCSEEEEETHHHHHHHHCTTSSSCCCCEEEEEE-CCBS----CEE-EEECGG
T ss_pred cCCCeeEEEecCCHHHHHHHHHCCCCcCCcCeEeecchHHHHHHhCcccCCCCCCEEEEEE-eccC----CeE-EEEecc
Confidence 356 888888888999999999999 99998754322211 12344553332 2211 133 456766
Q ss_pred ccccC---CC-CCc-------ccCCCCcccCCCCCCCCCchhHHHHHHhCCCCC
Q 044324 156 VCQEN---GG-INL-------MDFKGHKSCHGSYSTAAGWNYPVNHIKGSTPTF 198 (291)
Q Consensus 156 ~~~~S---~~-~~l-------~dLkGKksCHtG~~~taGW~iPvg~L~~~~~~c 198 (291)
+ ++ .++ +||||||.-.+..+++. ..+-...|.+.|+..
T Consensus 134 ----~~~~~i~~s~~~l~~~~~dLkGk~iav~~~gs~~-~~~l~~~L~~~Gl~~ 182 (417)
T 2g29_A 134 ----YKDLKVGTDAAPLKEAFAKVTDPKVAMTFPGGTH-DMWIRYWLAAGGMEP 182 (417)
T ss_dssp ----GGGGCCCSCCTTHHHHHHTSSSCEEEESSTTSHH-HHHHHHHHHHTTCCB
T ss_pred ----hhhccccCCHHHHHHHHHhcCCCEEEEeCCCCHH-HHHHHHHHHHcCCCC
Confidence 4 34 675 89999999988766553 333334566667644
No 64
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=78.26 E-value=1.1 Score=37.80 Aligned_cols=76 Identities=16% Similarity=0.142 Sum_probs=40.5
Q ss_pred CcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEeecCCCceeEEEEEEecCccccCCCCCcccC
Q 044324 89 DYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMDF 168 (291)
Q Consensus 89 ~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dL 168 (291)
+.+++=+. .+-..++..+++|++|++.-.-. +...+.-.+. +.+.|- .....+.+++++ .+.+.+++||
T Consensus 48 g~~~~~~~-~~~~~~~~~l~~g~~D~~~~~~~--~t~eR~~~~~--fs~p~~---~~~~~~~~~~~~---~~~~~~~~dL 116 (243)
T 4gvo_A 48 GYKFKFKT-MDFSNLLVSLGAGKVDIVAHQME--KSKEREKKFL--FNDVAY---NNFPLQLTVLDS---NNSINSTKDL 116 (243)
T ss_dssp TEEEEEEE-CCGGGHHHHHHTTSCSEECSCCB--CCHHHHHHSE--ECSSCC---EECCEEEEEETT---CCSCSSGGGG
T ss_pred CCeEEEEE-CCHHHHHHHHHCCCCCEecccCC--CCHHHhhhhh--hhhhhc---ccccceEEEecc---ccccCchHHh
Confidence 44555444 35788999999999998752100 1110100000 100000 011233444443 1557899999
Q ss_pred CCCcccC
Q 044324 169 KGHKSCH 175 (291)
Q Consensus 169 kGKksCH 175 (291)
+|||.+-
T Consensus 117 ~g~~v~v 123 (243)
T 4gvo_A 117 AGKRVIT 123 (243)
T ss_dssp TTCEEEE
T ss_pred cCCeEEE
Confidence 9999865
No 65
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=77.06 E-value=17 Score=29.15 Aligned_cols=103 Identities=13% Similarity=0.028 Sum_probs=58.4
Q ss_pred CCCceEEEecc-chHHHHHHHHHHhhcCCCc--ceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEE
Q 044324 61 SEATIKWCAVR-DQYEDCEYLVSIISQSEDY--TWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANE 137 (291)
Q Consensus 61 ~~~~vRwCv~S-~E~~KC~~l~~~a~~~~~p--~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E 137 (291)
..+++|+.+.. ....-=..+ -..+....| .++... .+..+.++++.+|++|++........ ..+...++..|
T Consensus 9 ~~g~l~Ig~~~~~~~~~l~~~-l~~~~~~~P~v~i~~~~-~~~~~~~~~l~~g~~Dl~i~~~~~~~---~~l~~~~l~~~ 83 (232)
T 3ho7_A 9 LTGRLNIAVLPTIAPYLLPRV-FPIWKKELAGLEIHVSE-MQTSRCLASLLSGEIDMAIIASKAET---EGLEDDLLYYE 83 (232)
T ss_dssp -CEEEEEEECTTTHHHHHHHH-HHHHHHHSTTEEEEEEE-CCHHHHHHHHHHTSCSEEEESSCCCC---TTEEEEEEEEE
T ss_pred cceeEEEEeccccchhhhHHH-HHHHHHHCCCcEEEEEe-CCHHHHHHHHHcCCCCEEEEcCCCCC---CCeEEEEeccc
Confidence 45689998877 444333332 222322224 455444 35789999999999999987654211 12222344322
Q ss_pred eecCCCceeEEEEEEecCcc-ccCCCCCcccCCCCcccCCC
Q 044324 138 VYCDHAQSYDAVAVINRKVC-QENGGINLMDFKGHKSCHGS 177 (291)
Q Consensus 138 ~y~~~~~~Y~aVAVVkK~~~-~~S~~~~l~dLkGKksCHtG 177 (291)
..+.|+.++.- +.....+++||++.+.-...
T Consensus 84 ---------~~~~v~~~~hpl~~~~~~~~~dL~~~~~i~~~ 115 (232)
T 3ho7_A 84 ---------EFLGYVSRCEPLFEQDVIRTTEVNPHRLWLLD 115 (232)
T ss_dssp ---------EEEEEECTTSGGGGSSSBCGGGCCGGGBCCCT
T ss_pred ---------CEEEEEcCCCccccCCCcCHHHhcCCCEEEec
Confidence 33667777611 11124688999887766544
No 66
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=76.85 E-value=4.2 Score=36.04 Aligned_cols=87 Identities=11% Similarity=-0.042 Sum_probs=55.4
Q ss_pred CcceEEEecCCHHHHHHHHhccCCcEEEeCCce---eeeecccCCcEEEEEEeecCCCceeEEEEEEecCccccCCCCCc
Q 044324 89 DYTWKCVKRDTAQECLDSARKGEADIINLEAGL---AYTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINL 165 (291)
Q Consensus 89 ~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~---iy~A~~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l 165 (291)
+..++-..-.+..+.++++..|++|+..+.... +|..+ ..++-+..-. .+ .+.||.++ +
T Consensus 32 g~~v~~~~~~~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g--~~~~i~~~~~--~g-----~~~lv~~~----~----- 93 (283)
T 3hn0_A 32 NKKVQVKVVDSPDLAQALLIKQETDIAVLPMINAANLYNKG--IKIKLAGCPI--WG-----TLYLVEKT----P----- 93 (283)
T ss_dssp TEEEEEEEESCHHHHHHHHHTTCCSEEEEEHHHHHHHHHTT--CSCEEEEEEE--CC-----CCEEEECS----S-----
T ss_pred CccEEEEEeCCHHHHHHHHHCCCCCEEEEcHHHHHHHHHCC--CCeEEEEEec--cc-----EEEEEecC----C-----
Confidence 356777777889999999999999999986543 23222 2344222211 11 13356666 3
Q ss_pred ccCCCCcccCCCCCCCCCchhHHHHHHhCCC
Q 044324 166 MDFKGHKSCHGSYSTAAGWNYPVNHIKGSTP 196 (291)
Q Consensus 166 ~dLkGKksCHtG~~~taGW~iPvg~L~~~~~ 196 (291)
|||||..-++.++++ ..+-...|.+.|+
T Consensus 94 --LkGK~Iav~~~gs~~-~~ll~~~L~~~Gl 121 (283)
T 3hn0_A 94 --LKEPALYVFGNGTTP-DILTRYYLGRQRL 121 (283)
T ss_dssp --CCSCCEECSSTTSHH-HHHHHHHHHHHTC
T ss_pred --CCCCEEEecCCCCcH-HHHHHHHHHHcCC
Confidence 999999988777553 4443445555665
No 67
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=75.34 E-value=16 Score=28.78 Aligned_cols=102 Identities=9% Similarity=0.025 Sum_probs=56.5
Q ss_pred CCceEEEecc-chHHHHHHHHHHhhcCCC--cceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEe
Q 044324 62 EATIKWCAVR-DQYEDCEYLVSIISQSED--YTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEV 138 (291)
Q Consensus 62 ~~~vRwCv~S-~E~~KC~~l~~~a~~~~~--p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~ 138 (291)
.+++|+.+.. ....-=..+ -..+.... ..++.... +..+.++++.+|++|++....... ...+...++..|
T Consensus 3 ~g~l~Ig~~~~~~~~~l~~~-l~~~~~~~P~i~i~i~~~-~~~~~~~~l~~g~~Dl~i~~~~~~---~~~~~~~~l~~~- 76 (219)
T 3jv9_A 3 EGAFKLGLIFTVAPYLLPKL-IVSLRRTAPKMPLMLEEN-YTHTLTESLKRGDVDAIIVAEPFQ---EPGIVTEPLYDE- 76 (219)
T ss_dssp CCCEEEEEETTTHHHHHHHH-HHHHHHHSTTCCEEEEEE-CHHHHHHHHHHTSSSEEEEESSCC---CTTEEEEEEEEE-
T ss_pred CCcEEEEEcchhhHHHHHHH-HHHHHHHCCCcEEEEEeC-CcHHHHHHHHcCCCCEEEEcCCCC---CCCeeEEEeeec-
Confidence 4678887776 433222222 11222222 34555444 567899999999999998754311 122233444422
Q ss_pred ecCCCceeEEEEEEecCcc-ccCCCCCcccCCCCcccCCC
Q 044324 139 YCDHAQSYDAVAVINRKVC-QENGGINLMDFKGHKSCHGS 177 (291)
Q Consensus 139 y~~~~~~Y~aVAVVkK~~~-~~S~~~~l~dLkGKksCHtG 177 (291)
.-+.|+.++.- +.....+++||++.+.-...
T Consensus 77 --------~~~~v~~~~~pl~~~~~~~~~~L~~~~~i~~~ 108 (219)
T 3jv9_A 77 --------PFFVIVPKGHSFEELDAVSPRMLGEEQVLLLT 108 (219)
T ss_dssp --------EEEEEEETTCGGGTSSSCCSSTTSSSCEEEEC
T ss_pred --------eEEEEEeCCCCcccCCCCCHHHhcCCcEEEec
Confidence 33666676611 11124688999988776643
No 68
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=74.57 E-value=4.4 Score=33.67 Aligned_cols=68 Identities=13% Similarity=0.085 Sum_probs=40.6
Q ss_pred CcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCc-EEEEEEeecCCCceeEEEEEEecCccccCCCCCccc
Q 044324 89 DYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSM-KAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMD 167 (291)
Q Consensus 89 ~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L-~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~d 167 (291)
+.+++-+. .+...++..+++|++|++...-...-.-.+.+.. .|++ ....+.|++++ + ++|
T Consensus 43 g~~~~~~~-~~~~~~~~~l~~g~~D~~~~~~~~t~~r~~~~~fs~p~~---------~~~~~~~~~~~----~----~~d 104 (232)
T 3i6v_A 43 GLTCEWVK-NDWDSIIPNLVSGNYDTIIAGMSITDERDEVIDFTQNYI---------PPTASSYVATS----D----GAD 104 (232)
T ss_dssp TCCEEEEE-CCGGGHHHHHHTTSCSEECSSCBCCHHHHTTSEEEEEEE---------CCCEEEEEESS----T----TCC
T ss_pred CCceEEEE-CCHHHHHHHHHCCCCCEEEeCCcCCHHHHhhcCcccccc---------cCCeEEEEECC----C----hHH
Confidence 44566666 4889999999999999965432111000011211 1322 11346677888 4 889
Q ss_pred CCCCcccC
Q 044324 168 FKGHKSCH 175 (291)
Q Consensus 168 LkGKksCH 175 (291)
|+| +.+-
T Consensus 105 L~g-~igv 111 (232)
T 3i6v_A 105 LSG-IVAA 111 (232)
T ss_dssp TTS-EEEE
T ss_pred hCC-CEEE
Confidence 999 7754
No 69
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=73.60 E-value=23 Score=31.47 Aligned_cols=113 Identities=12% Similarity=0.066 Sum_probs=68.4
Q ss_pred CCceEEEecc-chHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEe---CC--ceeeeecccCCcEEEE
Q 044324 62 EATIKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINL---EA--GLAYTAFLNFSMKAIA 135 (291)
Q Consensus 62 ~~~vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~l---d~--~~iy~A~~~~~L~PIl 135 (291)
..+||+=... .|..-=..|.+..+...+.+++=+.. +..-..+++.+|++|+..- .. +.+|.... .+|+- +
T Consensus 15 ~~~I~Ig~~~~te~~i~~~i~~~~Le~~G~~Ve~~~~-~~~~~~~AL~~G~iD~~~e~w~~~~~~~~~~~~~-~~l~~-l 91 (280)
T 3tmg_A 15 LKSVKIGYVNWGGETAATNVLKVVFEKMGYNAEIFSV-TTSIMYQYLASGKIDGTVSSWVPTADKFYYEKLK-TKFVD-L 91 (280)
T ss_dssp CEEEEEEECCCHHHHHHHHHHHHHHHHTTEEEEEEEC-CHHHHHHHHHTTSSSEEEEEEETTTTHHHHHHHG-GGEEE-E
T ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHCCCceEEEEC-CcHHHHHHHHCCCCcEEEeccCCcccHHHHHHhc-CcEEE-c
Confidence 4578887777 55543333434444445666666665 6788999999999999753 21 12332212 24442 2
Q ss_pred EEeecCCCceeEEEEEEecCccccCCCCCcccCCCCcccCCC--CCCCCCch
Q 044324 136 NEVYCDHAQSYDAVAVINRKVCQENGGINLMDFKGHKSCHGS--YSTAAGWN 185 (291)
Q Consensus 136 ~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dLkGKksCHtG--~~~taGW~ 185 (291)
...+. ..-++++| ++. .++.+++||++++.=|.| ++...||.
T Consensus 92 ~~~~~---~~~~~l~V-~~~----~~i~sisDL~~~~~~f~~~~~g~~~G~~ 135 (280)
T 3tmg_A 92 GANYE---GTIQGFVV-PSY----VPISSISELKGKGDKFKNKMIGIDAGAG 135 (280)
T ss_dssp EEEEE---EEEEEEEE-ETT----SCCCBGGGGTTCGGGGTTEEECCSTTCH
T ss_pred cccCC---CceEEEEE-CCC----CCCCCHHHHHhhHHHcCCeEEecCCCch
Confidence 22221 12356665 777 679999999998765543 46677885
No 70
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=72.13 E-value=2.7 Score=38.93 Aligned_cols=77 Identities=4% Similarity=-0.069 Sum_probs=45.8
Q ss_pred CcceEEEecCCHHHHHHHHhccCCcEEEeCCc-eeeeec-ccC--CcEEEEEEeecCCCceeEEEEEEecCccccCCCCC
Q 044324 89 DYTWKCVKRDTAQECLDSARKGEADIINLEAG-LAYTAF-LNF--SMKAIANEVYCDHAQSYDAVAVINRKVCQENGGIN 164 (291)
Q Consensus 89 ~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~-~iy~A~-~~~--~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~ 164 (291)
+..++-+...+.... +..+.+|++.+.+. ..+.+. ... .++-|..- +... .. ..||+++ +++.+
T Consensus 46 Gl~Ve~~~~~~g~~~---~~~~~~d~~~~~g~~~~~~a~~~g~~~~~~~v~~~-~~~~---~~-~i~v~~d----s~I~s 113 (365)
T 2de3_A 46 GIELDVLSGQQGTVH---FTYDQPAYTRFGGEIPPLLSEGLRAPGRTRLLGIT-PLLG---RQ-GFFVRDD----SPITA 113 (365)
T ss_dssp TCEEEECBGGGTTHH---HHCCSTTEEEEECSHHHHHHHHTTCTTSEEEEEEE-EECC---SE-EEEEETT----CSCCS
T ss_pred CceEEEEeCCChhHH---HhccCchhhhhcCCcHHHHHHhcCCCCCeEEEEEe-ccCC---cc-eEEECCC----CCCCC
Confidence 456666666555444 44688898754333 223332 112 45544322 2111 23 4567888 88999
Q ss_pred cccCCCCcccCCC
Q 044324 165 LMDFKGHKSCHGS 177 (291)
Q Consensus 165 l~dLkGKksCHtG 177 (291)
++||||||...+.
T Consensus 114 ~~DLkGk~Igv~~ 126 (365)
T 2de3_A 114 AADLAGRRIGVSA 126 (365)
T ss_dssp GGGGTTCEEEECH
T ss_pred HHHhCCCeEEeec
Confidence 9999999998876
No 71
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=71.68 E-value=3.5 Score=36.98 Aligned_cols=31 Identities=13% Similarity=0.010 Sum_probs=23.9
Q ss_pred cceEEEec---CCHHHHHHHHhccCCcEEEeCCc
Q 044324 90 YTWKCVKR---DTAQECLDSARKGEADIINLEAG 120 (291)
Q Consensus 90 p~l~CV~~---~s~~dCm~~I~~g~ADiv~ld~~ 120 (291)
..|+-..+ .+..+++++++.|.+|+..+.+.
T Consensus 34 i~i~~~~~g~Lg~~~~~~~~v~~G~id~~~~~~~ 67 (301)
T 2pfz_A 34 LKITLHNNASLYKAPEIKRAVQGNQAQIGEILLT 67 (301)
T ss_dssp CEEEEECTTSSSCGGGHHHHHHTTSSSEEEEEGG
T ss_pred EEEEEccCcccCChHHHHHHHHCCceeeEechhh
Confidence 56665554 25689999999999999987654
No 72
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=70.67 E-value=12 Score=29.79 Aligned_cols=102 Identities=9% Similarity=-0.032 Sum_probs=56.2
Q ss_pred CCCceEEEecc-chHHHHHHHHHHhhcCCCc--ceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEE
Q 044324 61 SEATIKWCAVR-DQYEDCEYLVSIISQSEDY--TWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANE 137 (291)
Q Consensus 61 ~~~~vRwCv~S-~E~~KC~~l~~~a~~~~~p--~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E 137 (291)
..+++|+.+.. ....-=..+ -..+....| .++.... +..+.++++.+|++|++....... ...+...++..
T Consensus 6 ~~g~l~Ig~~~~~~~~~l~~~-l~~f~~~~P~i~i~i~~~-~~~~~~~~l~~g~~Di~i~~~~~~---~~~~~~~~l~~- 79 (222)
T 4ab5_A 6 EAGELRIAVECHTCFDWLMPA-MGEFRPMWPQVELDIVSG-FQADPVGLLLQHRADLAIVSEAEK---QNGISFQPLFA- 79 (222)
T ss_dssp TTEEEEEECCCTTTHHHHHHH-HHHHHHHSTTEEEEEECC-CCSCTHHHHHTTSCSEEEESCCCC---CTTEEEEEEEE-
T ss_pred ccceEEEEEehHHHHHHHHHH-HHHHHHHCCCcEEEEecC-CHHHHHHHHHcCCcCEEEecCCCC---cCCeEEEEeec-
Confidence 45689998876 433222222 122222223 4555444 456899999999999998753321 11122233332
Q ss_pred eecCCCceeEEEEEEecCc-cccCCCCCcccCCCCcccCC
Q 044324 138 VYCDHAQSYDAVAVINRKV-CQENGGINLMDFKGHKSCHG 176 (291)
Q Consensus 138 ~y~~~~~~Y~aVAVVkK~~-~~~S~~~~l~dLkGKksCHt 176 (291)
...+.|+.++. .+.....+++||++.+.-..
T Consensus 80 --------~~~~~v~~~~~pl~~~~~i~~~dL~~~~~i~~ 111 (222)
T 4ab5_A 80 --------YEMVGICAPDHPLAAKNVWTAEDFIGETLITY 111 (222)
T ss_dssp --------EEEEEEECTTSGGGGCSEECGGGGSSSCEEEC
T ss_pred --------CcEEEEecCCChhhccCCcCHHHHcCCCEEec
Confidence 23467777772 11112357889988776653
No 73
>4ib2_A Putative lipoprotein; putative methionine-bindning, NLPA lipoprotein, PF03180 FAMI structural genomics, joint center for structural genomics; 1.76A {Ruminococcus gnavus}
Probab=69.94 E-value=13 Score=33.52 Aligned_cols=118 Identities=14% Similarity=0.052 Sum_probs=74.8
Q ss_pred CceEEEecc-chHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCcee---eeecccCCcEEEEEEe
Q 044324 63 ATIKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLA---YTAFLNFSMKAIANEV 138 (291)
Q Consensus 63 ~~vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~i---y~A~~~~~L~PIl~E~ 138 (291)
.+||+=+.. ....-=+.. ...+...+..++-+.-+|+.+..+++..|+.|+-.+.-... |...+.++|++|..-.
T Consensus 11 ~~ikVG~~~~p~~~il~~v-~~~~~k~Gi~veiv~F~Dy~~pN~AL~~G~iDaN~fQh~pyL~~~~k~~g~~lv~v~~~~ 89 (252)
T 4ib2_A 11 KTIKVAASATPHAEILEQA-KSILKKEGYQLEVTVFDDYVQPNEVVESGEFDANYFQHVPYLESFNEEKGTHLVDAGDIH 89 (252)
T ss_dssp HEEEEEECTTTHHHHHHHH-HHHHHHTTCEEEEEECSSSSHHHHHHHTTSSSEEEEEEHHHHHHHHHHHCCCEEEEEEEE
T ss_pred ceEEEEEcCCChHHHHHHH-HHHHHhcCCeEEEEEecChhhHHHHHHcCCcCeeecCCHHHHHHHHHHCCCCEEEEeecc
Confidence 357776655 311100112 22333457899999999999999999999999988866532 3333568888876433
Q ss_pred ecCCCceeEEEEEEecCccccCCCCCcccCC-CCcccCCCCCCCCCchhHHHHHHhCCC
Q 044324 139 YCDHAQSYDAVAVINRKVCQENGGINLMDFK-GHKSCHGSYSTAAGWNYPVNHIKGSTP 196 (291)
Q Consensus 139 y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dLk-GKksCHtG~~~taGW~iPvg~L~~~~~ 196 (291)
.. + +++.-+. +.+++||+ |++..-+.- .+..-.-+..|.+.|+
T Consensus 90 ~~--p-----~glyS~k------iksl~dLk~Ga~IAipnd--~sN~~RaL~lL~~aGL 133 (252)
T 4ib2_A 90 YE--P-----FGIYPGT------KKSLDEISEGDKIAVPND--TTNEARALLLLQDNGI 133 (252)
T ss_dssp EC--C-----CEEEESS------CSCGGGCCTTCEEEEECS--HHHHHHHHHHHHHTTS
T ss_pred cc--c-----eEeecCC------cCCHHHcCCCCEEEeeCC--CCHHHHHHHHHHHCCC
Confidence 22 1 2333333 78999999 999888543 3333344556667774
No 74
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=69.93 E-value=29 Score=27.81 Aligned_cols=101 Identities=10% Similarity=0.008 Sum_probs=53.9
Q ss_pred CCceEEEecc-chHHHHHHHHHHhhcCCCcceEEEe-cCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEee
Q 044324 62 EATIKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVK-RDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVY 139 (291)
Q Consensus 62 ~~~vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~-~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y 139 (291)
.+++|+.+.. ....-=..+ -..|....|.++-.. ..+..+.++++.+|++|++...... ....+...++..|
T Consensus 4 ~g~lrIg~~~~~~~~~l~~~-l~~f~~~~P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~~~~---~~~~l~~~~l~~~-- 77 (219)
T 1i6a_A 4 SGPLHIGLIPTVGPYLLPHI-IPMLHQTFPKLEMYLHEAQTHQLLAQLDSGKLDAVILALVK---ESEAFIEVPLFDE-- 77 (219)
T ss_dssp CEEEEEEECTTTHHHHHHHH-HHHHHHHCTTEEEEEEECCHHHHHHHHHHTSCSEEEEECCG---GGTTSEEEEEEEE--
T ss_pred ceEEEEEeccchhhhhhhHH-HHHHHHHCCCeEEEEEECChHHHHHHHHcCCeeEEEecCCC---CCCCcceeeeecc--
Confidence 4578888776 433222222 122322235444332 2467899999999999998864321 1122333455433
Q ss_pred cCCCceeEEEEEEecCcc-ccCCCCCcccCCCCcccC
Q 044324 140 CDHAQSYDAVAVINRKVC-QENGGINLMDFKGHKSCH 175 (291)
Q Consensus 140 ~~~~~~Y~aVAVVkK~~~-~~S~~~~l~dLkGKksCH 175 (291)
.-+.|+.++-- +.....+++||++...-.
T Consensus 78 -------~~~~v~~~~hpla~~~~i~~~dL~~~~~i~ 107 (219)
T 1i6a_A 78 -------PMLLAIYEDHPWANREAVPMADLAGEKLLM 107 (219)
T ss_dssp -------EEEEEEETTSGGGGCSCEEGGGGTTSEEEC
T ss_pred -------cEEEEEcCCCccccCCccCHHHhcCCcEEE
Confidence 23667777610 111235778888766543
No 75
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=69.85 E-value=4.8 Score=33.64 Aligned_cols=64 Identities=16% Similarity=0.057 Sum_probs=38.1
Q ss_pred CCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEeecCCCceeEEEEEEecCccccCCCCCcccCCCCccc
Q 044324 98 DTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMDFKGHKSC 174 (291)
Q Consensus 98 ~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dLkGKksC 174 (291)
.+..+.+..+++|++|++...- .+...+.-.+. +.+-| .....+.|++++ +++.+++||+ |+..
T Consensus 65 ~~~~~~~~~l~~g~~D~~~~~~--~~t~~R~~~~~--fs~p~----~~~~~~~~~~~~----~~i~~~~dL~-~~v~ 128 (265)
T 2v3u_A 65 GTWNGLVGELVFKRADIGISAL--TITPDRENVVD--FTTRY----MDYSVGVLLRRG----TSIQSLQDLS-KQTD 128 (265)
T ss_dssp SCBCHHHHHHHTTSCSEECSSC--BCCHHHHTTEE--ECSCS----EEECEEEEEETT----CCCCSHHHHH-TCSS
T ss_pred CCcchHHHHHHcCCcCeEEeee--Eeehhhhcccc--cccee----eeccEEEEEECC----CCccchhhhh-hhhc
Confidence 4678999999999999986221 11111111111 10001 022346778888 7789999999 6543
No 76
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=69.24 E-value=6.8 Score=37.25 Aligned_cols=103 Identities=12% Similarity=0.003 Sum_probs=62.9
Q ss_pred CCc-ceEEEecCCHHHHHHHHhccC----CcEEEeCCceeeeec-------ccCCcEEEEEEeecCCCceeEEEEEEecC
Q 044324 88 EDY-TWKCVKRDTAQECLDSARKGE----ADIINLEAGLAYTAF-------LNFSMKAIANEVYCDHAQSYDAVAVINRK 155 (291)
Q Consensus 88 ~~p-~l~CV~~~s~~dCm~~I~~g~----ADiv~ld~~~iy~A~-------~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~ 155 (291)
.+. .++-+...+-.+-++++..|+ +|+..+.+...+... +...++-++.- +.. + .+ .+|+++
T Consensus 63 ~Gl~~Vel~~~~s~~~~~~al~~G~~~~~~D~a~~~~~~~~~~~~g~~~~~~g~~~~~v~~~-~~~-g---~~-i~v~~~ 136 (429)
T 2i49_A 63 YGMTGVEVSKQANWASARDNVTIGSQGGGIDGGQWQMPMPHLITEGIITNGNKVPMYVLAQL-ITQ-G---NG-IAVAPM 136 (429)
T ss_dssp TTCCEEEEEECSSHHHHHHHHHHTGGGTSCSEEEECTTHHHHHHTTTTTTTCCCCEEEEEEC-CBC-C---EE-EEECGG
T ss_pred cCCCeeEEEEcCCHHHHHHHHHcCCCCCceeEEEeccHHHHHHHcCccccCCCCCEEEEEEe-ccC-C---cE-EEEecc
Confidence 356 889899889999999999999 999988444333321 12344433322 221 1 33 444554
Q ss_pred ccccCCCCC--------cccC-C--CC--cccCCCCCCCCCchhHHHHHHhCCCCC
Q 044324 156 VCQENGGIN--------LMDF-K--GH--KSCHGSYSTAAGWNYPVNHIKGSTPTF 198 (291)
Q Consensus 156 ~~~~S~~~~--------l~dL-k--GK--ksCHtG~~~taGW~iPvg~L~~~~~~c 198 (291)
.. .+++.+ ++|| | || |...+..+++. ..+-...|.+.|+..
T Consensus 137 ~~-~s~i~~~~~~lk~~i~dL~k~~GK~~~Iav~~~gs~~-~~~l~~~L~~~Gl~p 190 (429)
T 2i49_A 137 HE-GKGVNLDITKAADYIKGFNKTNGRKFKAAHTFPNVNQ-DFWIRYWFAAGGVDP 190 (429)
T ss_dssp GT-TTTCSSCCGGGHHHHHTHHHHHSSCCEEEESSTTSHH-HHHHHHHHHHTTCCT
T ss_pred hh-hcccccchHHHHHHHHHHHHhCCCCcEEEEeCCCCHH-HHHHHHHHHhcCCCC
Confidence 10 023444 6999 9 99 88887666553 333344566677655
No 77
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=69.15 E-value=0.88 Score=42.12 Aligned_cols=31 Identities=13% Similarity=0.046 Sum_probs=24.2
Q ss_pred cceEEEecC---CHHHHHHHHhccCCcEEEeCCc
Q 044324 90 YTWKCVKRD---TAQECLDSARKGEADIINLEAG 120 (291)
Q Consensus 90 p~l~CV~~~---s~~dCm~~I~~g~ADiv~ld~~ 120 (291)
..|+-..+. +..+.+++++.|.+|++.+.+.
T Consensus 67 v~i~v~~~g~Lg~~~~~~e~v~~G~id~~~~~~~ 100 (361)
T 2zzv_A 67 LEVQPFPAGAVVGTFDMFDAVKTGVLDGMNPFTL 100 (361)
T ss_dssp EEEEEECTTSSSCGGGHHHHHHHTSSSEEECBGG
T ss_pred EEEEEeCCCcccCHHHHHHHHHcCceeEEEeccc
Confidence 455555442 6789999999999999988765
No 78
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=68.53 E-value=11 Score=33.77 Aligned_cols=97 Identities=9% Similarity=0.062 Sum_probs=67.9
Q ss_pred hcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCceee---eecccCCcEEEEEEeecCCCceeEEEEEEecCccccCC
Q 044324 85 SQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAY---TAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENG 161 (291)
Q Consensus 85 ~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy---~A~~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~ 161 (291)
+...+..++-+.-+|+.+=..++..|+.|+-.+.....+ ...+.++|++|..-... -+++..+.
T Consensus 26 l~k~Gi~veiv~F~dy~~pN~AL~~G~iD~n~fQh~pyl~~~~k~~g~~Lv~v~~~~~~-------p~glYS~k------ 92 (246)
T 4ef1_A 26 LEKEGVKLEVTTYTDYVLPNKALESGDIDANYFQHVPFFNEAVKENDYDFVNAGAIHLE-------PVGLYSKK------ 92 (246)
T ss_dssp HHHTTEEEEEEECSSSSHHHHHHHHTSCSEEEEEEHHHHHHHHHHHTCCEEEEEEEEEC-------CCEEECSS------
T ss_pred HHhcCCEEEEEEeCCchhHHHHHHCCCCCEEecCCHHHHHHHHHHCCCCEEEEeecccc-------ceEEecCC------
Confidence 334578999999999999999999999999988665332 22356888887643332 13443333
Q ss_pred CCCcccCC-CCcccCCCCCCCCCchhHHHHHHhCCC
Q 044324 162 GINLMDFK-GHKSCHGSYSTAAGWNYPVNHIKGSTP 196 (291)
Q Consensus 162 ~~~l~dLk-GKksCHtG~~~taGW~iPvg~L~~~~~ 196 (291)
+.+++||+ |++..-+.-. +....-+..|.+.|+
T Consensus 93 iksl~dL~~Ga~IAIpnd~--sn~~RaL~lL~~~GL 126 (246)
T 4ef1_A 93 YKSLQEIPDGSTIYVSSSV--SDWPRVLTILEDAGL 126 (246)
T ss_dssp CSSGGGSCTTCEEEEESCG--GGHHHHHHHHHHTTS
T ss_pred CCCHHHcCCCCEEEeecCC--chHHHHHHHHHHCCC
Confidence 89999998 9999886553 334444556667774
No 79
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=68.50 E-value=0.73 Score=42.70 Aligned_cols=32 Identities=6% Similarity=0.138 Sum_probs=25.6
Q ss_pred cceEEEecC---CHHHHHHHHhccCCcEEEeCCce
Q 044324 90 YTWKCVKRD---TAQECLDSARKGEADIINLEAGL 121 (291)
Q Consensus 90 p~l~CV~~~---s~~dCm~~I~~g~ADiv~ld~~~ 121 (291)
..|+-..+. +..+.+++++.|.+|+..+.+..
T Consensus 66 v~i~~~~~g~Lg~~~~~~eav~~G~iD~~~~~~~~ 100 (365)
T 2hzl_A 66 FQIQVFSAGELVPGLQAADAVTEGTVECCHTVGYY 100 (365)
T ss_dssp SEEEEECTTTSSCGGGHHHHHHTTSSSEEEECGGG
T ss_pred EEEEEecCCcccCHHHHHHHHHcCccceeecchhh
Confidence 566666553 67899999999999999988653
No 80
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=67.86 E-value=3.2 Score=36.36 Aligned_cols=64 Identities=9% Similarity=0.015 Sum_probs=38.9
Q ss_pred cCCHHHHHHHHhccCCcEEEeCCceeeeecccCCc---EEEEEEeecCCCceeEEEEEEecCccccC-CCCCcccCC---
Q 044324 97 RDTAQECLDSARKGEADIINLEAGLAYTAFLNFSM---KAIANEVYCDHAQSYDAVAVINRKVCQEN-GGINLMDFK--- 169 (291)
Q Consensus 97 ~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L---~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S-~~~~l~dLk--- 169 (291)
..+..+.+..+.+|++|++...-. +...+.-.+ .|++ ....+.|++++ + .+.+++||+
T Consensus 102 ~~~w~~~~~~l~~g~~D~~~~~~~--~t~eR~~~~~fs~P~~---------~~~~~i~~~~~----~~~i~~~~dL~~~~ 166 (294)
T 2rc8_A 102 NGHWTGLVGDLLSGTANMAVTSFS--INTARSQVIDFTSPFF---------STSLGILVRTR----GTELSGIHDPKLHH 166 (294)
T ss_dssp TTEECHHHHHHHHTSCSEECSSCB--CCHHHHTTSEECSCSE---------EEEEEEEEETT----SCCCCSTTCHHHHS
T ss_pred CCCHHHHHHHHHCCCcCEEEeccc--cCHhHhceEEEccchH---------hcceEEEEECC----CCCcCChhhhhhcC
Confidence 456789999999999999862211 111111111 1211 22346677776 4 578999998
Q ss_pred ---CCcccC
Q 044324 170 ---GHKSCH 175 (291)
Q Consensus 170 ---GKksCH 175 (291)
|++.+-
T Consensus 167 ~~~g~~vg~ 175 (294)
T 2rc8_A 167 PSQGFRFGT 175 (294)
T ss_dssp CCTTCCEEC
T ss_pred cccCeEEEE
Confidence 888765
No 81
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=67.69 E-value=6.7 Score=35.06 Aligned_cols=31 Identities=13% Similarity=0.113 Sum_probs=24.0
Q ss_pred cceEEEecC---CHHHHHHHHhccCCcEEEeCCc
Q 044324 90 YTWKCVKRD---TAQECLDSARKGEADIINLEAG 120 (291)
Q Consensus 90 p~l~CV~~~---s~~dCm~~I~~g~ADiv~ld~~ 120 (291)
..|+-..+. +..+++++++.|.+|+..+.+.
T Consensus 35 i~i~~~~~g~Lg~~~~~~e~v~~G~id~~~~~~~ 68 (301)
T 2pfy_A 35 LEIKVQSNSTLLKRPEVKRGVQQGVVQIGEVLVS 68 (301)
T ss_dssp EEEEEECTTSSSCGGGHHHHHHHTSSSEEEEEGG
T ss_pred EEEEEccchhhCChHHHHHHHHCCCeeeehhhhh
Confidence 566655542 5689999999999999987754
No 82
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=64.91 E-value=8.9 Score=34.57 Aligned_cols=31 Identities=13% Similarity=0.290 Sum_probs=21.9
Q ss_pred cceEEEecC---CHHHHHHHHhccCCcEEEeCCc
Q 044324 90 YTWKCVKRD---TAQECLDSARKGEADIINLEAG 120 (291)
Q Consensus 90 p~l~CV~~~---s~~dCm~~I~~g~ADiv~ld~~ 120 (291)
..|+-..+. +..+.+++++.|.+|+..+.+.
T Consensus 32 i~i~~~~~g~Lg~~~~~~e~v~~G~id~~~~~~~ 65 (316)
T 2vpn_A 32 HTVQVYRFGELGESDDIMEQTQNGILQFVNQSPG 65 (316)
T ss_dssp CEEEEECTTCC----CHHHHHHTTSCSEEEECHH
T ss_pred EEEEEecCCCCCChHHHHHHHhCCCceEEeecch
Confidence 566655543 3588999999999999987753
No 83
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=64.06 E-value=13 Score=30.31 Aligned_cols=99 Identities=10% Similarity=0.023 Sum_probs=52.1
Q ss_pred CCCceEEEecc-chHHHHHHHHHHhhcCCCc--ceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEE
Q 044324 61 SEATIKWCAVR-DQYEDCEYLVSIISQSEDY--TWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANE 137 (291)
Q Consensus 61 ~~~~vRwCv~S-~E~~KC~~l~~~a~~~~~p--~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E 137 (291)
..+++|+-+.. ....-=..+ -..+...-| .++-.. .+..+.++++.+|++|++...... ....+...|+..|
T Consensus 6 ~~g~l~Ig~~~~~~~~~lp~~-l~~f~~~~P~v~l~l~~-~~~~~l~~~L~~g~iDl~i~~~~~---~~~~l~~~~l~~~ 80 (218)
T 2y7p_A 6 STRTFNLAMTDIGEMYFMPPL-MEALAQRAPHIQISTLR-PNAGNLKEDMESGAVDLALGLLPE---LQTGFFQRRLFRH 80 (218)
T ss_dssp CCCEEEEECCHHHHHHHHHHH-HHHHHHHCTTCEEEEEC-CCTTTHHHHHHHTSSCEEEECCTT---CCTTEEEEEEEEE
T ss_pred cceEEEEEecHHHHHHHHHHH-HHHHHHHCCCCEEEEEe-CCcccHHHHHhCCCceEEEecCCC---CCcceeEEEeeec
Confidence 45788988776 433221222 112222224 444433 356789999999999999864321 1112223344432
Q ss_pred eecCCCceeEEEEEEecCccccCCCCCcccCCCCcc
Q 044324 138 VYCDHAQSYDAVAVINRKVCQENGGINLMDFKGHKS 173 (291)
Q Consensus 138 ~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dLkGKks 173 (291)
.-|+|+.++--......+++||.+-+.
T Consensus 81 ---------~~~~v~~~~hpla~~~i~l~dL~~~~~ 107 (218)
T 2y7p_A 81 ---------RYVCMFRKDHPSAKSPMSLKQFTELEH 107 (218)
T ss_dssp ---------CEEEEEETTCSSCCSSCCHHHHHHSEE
T ss_pred ---------cEEEEEcCCCCCCCCCCCHHHHhhCCC
Confidence 236777877100002356777776653
No 84
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=63.48 E-value=60 Score=27.14 Aligned_cols=103 Identities=13% Similarity=0.015 Sum_probs=57.1
Q ss_pred CCCceEEEecc-chHHHHHHHHHHhhcCCCc--ceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEE
Q 044324 61 SEATIKWCAVR-DQYEDCEYLVSIISQSEDY--TWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANE 137 (291)
Q Consensus 61 ~~~~vRwCv~S-~E~~KC~~l~~~a~~~~~p--~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E 137 (291)
..+++|+.+.. ....--..+ -..+....| .++.... +..+.++++.+|++|++......- ...+...++..|
T Consensus 89 ~~g~l~Ig~~~~~~~~~l~~~-l~~f~~~~P~i~l~~~~~-~~~~~~~~l~~g~~Dl~i~~~~~~---~~~l~~~~l~~~ 163 (294)
T 1ixc_A 89 DVGELSVAYFGTPIYRSLPLL-LRAFLTSTPTATVSLTHM-TKDEQVEGLLAGTIHVGFSRFFPR---HPGIEIVNIAQE 163 (294)
T ss_dssp CCEEEEEEECSGGGGTHHHHH-HHHHHHHCTTEEEEEEEC-CHHHHHHHHHHTSCSEEEESCCCC---CTTEEEEEEEEE
T ss_pred CCceEEEEEccchhHHHHHHH-HHHHHHHCCCcEEEEEeC-CHHHHHHHHHCCCccEEEEecCCC---CCCceEEEEeec
Confidence 45689998876 433222222 222322224 4554443 578899999999999998754321 112222344422
Q ss_pred eecCCCceeEEEEEEecCcc-ccCCCCCcccCCCCcccCCC
Q 044324 138 VYCDHAQSYDAVAVINRKVC-QENGGINLMDFKGHKSCHGS 177 (291)
Q Consensus 138 ~y~~~~~~Y~aVAVVkK~~~-~~S~~~~l~dLkGKksCHtG 177 (291)
..+.|+.++.- +.....+++||.+...-...
T Consensus 164 ---------~~~~v~~~~~pl~~~~~~~~~dL~~~~~i~~~ 195 (294)
T 1ixc_A 164 ---------DLYLAVHRSQSGKFGKTCKLADLRAVELTLFP 195 (294)
T ss_dssp ---------EEEEEEEGGGGGGTCSEECGGGGTTCEEEECC
T ss_pred ---------cEEEEEeCCCccccCCccCHHHHcCCCEEeeC
Confidence 33666776610 11123678999988766544
No 85
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=62.78 E-value=4.8 Score=36.58 Aligned_cols=163 Identities=13% Similarity=0.059 Sum_probs=91.8
Q ss_pred CCCceEEEecc-c---hHHHHHHHHHHhhcC-CCcceEEEecCCHHH--HHHHHhccCCc---EEEeCCc-ee---eeec
Q 044324 61 SEATIKWCAVR-D---QYEDCEYLVSIISQS-EDYTWKCVKRDTAQE--CLDSARKGEAD---IINLEAG-LA---YTAF 126 (291)
Q Consensus 61 ~~~~vRwCv~S-~---E~~KC~~l~~~a~~~-~~p~l~CV~~~s~~d--Cm~~I~~g~AD---iv~ld~~-~i---y~A~ 126 (291)
|.+.||+-|.. . -..--..| ...+.. .+-.+.-........ -++.+.++.+| ++..... .+ +...
T Consensus 6 P~~pi~~ivp~~~GG~~D~~aR~l-a~~l~~~lg~~vvV~n~~Ga~g~ig~~~v~~a~~DGytl~~~~~~~~~~~~~~~~ 84 (301)
T 2qpq_A 6 PNKPLDIIVTFPPGGGTDMLARLI-GNYLTESLGQTAVVENRPGASGNVGARLVADRAPDGYSLLMVNSSFAVNPGVFRN 84 (301)
T ss_dssp CCSCEEEEESSCTTSHHHHHHHHH-HHHHHHGGGSCEEEEECCTGGGHHHHHHHHTSCSSSSEEEEEETHHHHHHHHCTT
T ss_pred CCCCEEEEEccCCCcHHHHHHHHH-HHHHHHHhCCCEEEEECCChhHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHhccC
Confidence 66788887775 2 12223333 222221 133455454444333 34889999999 5443333 11 1111
Q ss_pred ccC----CcEEEEEEeecCCCceeEEEEEEecCccccCCCCCcccCCC-------C-cccCCCCCCCCCchhHHHHHHh-
Q 044324 127 LNF----SMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMDFKG-------H-KSCHGSYSTAAGWNYPVNHIKG- 193 (291)
Q Consensus 127 ~~~----~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dLkG-------K-ksCHtG~~~taGW~iPvg~L~~- 193 (291)
..| +++||.. .+ .+..|.||+++ +++.+++||.+ | +.-.+|.+++ .++-...|.+
T Consensus 85 ~~yd~~~d~~pv~~-~~-----~~~~~lvv~~~----s~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~--~hl~~~~l~~~ 152 (301)
T 2qpq_A 85 LPFDPKKDFAAVIN-VA-----YVPSVFVVPAG----SKYKTLGELMAAAKQTNTQVTYGSCGNGTP--QHLAGELLNVS 152 (301)
T ss_dssp CSSCTTTTEEEEEE-EE-----EEEEEEEEETT----CSCCSHHHHHHHTCSSSCCCEEEESSTTSH--HHHHHHHHHHH
T ss_pred CCCCchhcchhhhe-hh-----cCCeEEEEeCC----CCCCCHHHHHHHHHhCCCceEEecCCCCcH--HHHHHHHHHHH
Confidence 223 5677752 12 34668889999 88999999965 2 3334444332 3333333332
Q ss_pred CCCCCCCCCCchhhhhhccccccCCCCCCCCCCCCcCCCCCCCCCCCCCCccCccccccccccCCCcEEEEechhhhhhh
Q 044324 194 STPTFDSGKISDIEIASSFFSEVCAPGEFEGTGMCSGCGIENGSCHSNSLYFGDSGAFRCLVEELGDIAFVRGDTALLYS 273 (291)
Q Consensus 194 ~~~~c~~~~~~~~~~~s~FFs~SCvPG~~~~~~LC~lC~g~~~~C~~~e~Y~Gy~GAlrCL~eg~GDVAFVk~~tV~~~~ 273 (291)
.|+.- ..-+|-|..-|+.=|..|.=|++|.....+..+.
T Consensus 153 ~G~~~-----------------------------------------~~Vpy~g~~~a~~al~~G~vD~~~~~~~~~~~~i 191 (301)
T 2qpq_A 153 AKTHM-----------------------------------------VHVPYKGCGPALNDVLGSQIGLAVVTASSAIPFI 191 (301)
T ss_dssp HTCCC-----------------------------------------EEEECSSHHHHHHHHHTTSSSCEEEEHHHHHHHH
T ss_pred hCCCe-----------------------------------------EEeccCChHHHHHHHHCCCccEEEEcHHHHHHHH
Confidence 23311 0123677778888888888899999888887777
Q ss_pred cCCC
Q 044324 274 KEGP 277 (291)
Q Consensus 274 ~dg~ 277 (291)
+.|+
T Consensus 192 ~~g~ 195 (301)
T 2qpq_A 192 KAGK 195 (301)
T ss_dssp HTTS
T ss_pred hcCC
Confidence 5554
No 86
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=62.76 E-value=15 Score=29.99 Aligned_cols=103 Identities=9% Similarity=0.028 Sum_probs=56.4
Q ss_pred CCCCceEEEecc-chHHHHHHHHHHhhcCCCc--ceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEE
Q 044324 60 GSEATIKWCAVR-DQYEDCEYLVSIISQSEDY--TWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIAN 136 (291)
Q Consensus 60 ~~~~~vRwCv~S-~E~~KC~~l~~~a~~~~~p--~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~ 136 (291)
...+++|+.+.. ....-=..+ -..+....| .|+... .+..+.++++.+|++|++...... ....+...++..
T Consensus 16 ~~~g~l~Ig~~~~~~~~~l~~~-l~~f~~~~P~i~l~~~~-~~~~~~~~~l~~g~~Dl~i~~~~~---~~~~~~~~~l~~ 90 (241)
T 3oxn_A 16 QCDQTFTIATTDYAMQTILPFA-LPRIYQEAPNVSFNFLP-LQHDRLSDQLTYEGADLAICRPTG---PVEPLRSEILGR 90 (241)
T ss_dssp SCCCEEEEEECSHHHHHTHHHH-HHHHHHHCTTCEEEEEE-CCGGGHHHHHHTSCCSEEEECCSS---CCTTEEEEEEEC
T ss_pred cCCceEEEEechHHHHHHHHHH-HHHHHHHCCCCEEEEEE-CCcccHHHHHHcCCCCEEEecCCC---CCccceeEEeec
Confidence 346789999888 444333333 222322223 455544 456789999999999999874332 111122233331
Q ss_pred EeecCCCceeEEEEEEecCccccCCCCCcccCCCCcccCC
Q 044324 137 EVYCDHAQSYDAVAVINRKVCQENGGINLMDFKGHKSCHG 176 (291)
Q Consensus 137 E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dLkGKksCHt 176 (291)
...++|+.++.-......+++||++...-..
T Consensus 91 ---------~~~~~v~~~~hpl~~~~i~~~dL~~~~~i~~ 121 (241)
T 3oxn_A 91 ---------VGVLCLLSKQHPLANQEMSLDDYLSHPHAMI 121 (241)
T ss_dssp ---------CCEEEEEETTSGGGGSCCCHHHHHTSEEEEC
T ss_pred ---------ccEEEEEeCCCCcccCCCCHHHHhcCCeEEE
Confidence 1236666776100002356777777666543
No 87
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=62.30 E-value=20 Score=32.18 Aligned_cols=110 Identities=15% Similarity=0.188 Sum_probs=62.6
Q ss_pred CCceEEEecc-chHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEE---eCC-ceeeeec-ccCCcEEEE
Q 044324 62 EATIKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIIN---LEA-GLAYTAF-LNFSMKAIA 135 (291)
Q Consensus 62 ~~~vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~---ld~-~~iy~A~-~~~~L~PIl 135 (291)
..+||+=... .|..-=..|....+...+.+++=+.+ +....++++.+|++|+.. +.. ..+|... ...+|+-+
T Consensus 6 ~~~I~ig~~~~~~~~~~~~i~~~~Le~~G~~Ve~~~~-~~~~~~~Al~~G~iD~~~~~w~~~~~~~~~~~~~~~~l~~l- 83 (298)
T 2rin_A 6 CGTVRFSDVGWTDITATTATATTILEALGYETDVKVL-SVPVTYTSLKNKDIDVFLGNWMPTMEADIAPYREDKSVETV- 83 (298)
T ss_dssp TTEEEEECCSCHHHHHHHHHHHHHHHHHTCEEEEECC-CHHHHHHHHHHTSCCEEEEEEETTTHHHHHHHHTTTSEEEE-
T ss_pred CCCEEEecCCCcHHHHHHHHHHHHHHHcCCceEEEEC-CcHHHHHHHHcCCcEEEhhhccCchHHHHHHHhhCCCEEEe-
Confidence 3467776656 54332223323333333556666664 778899999999999985 221 1233322 23455532
Q ss_pred EEeecCCCceeEEEEEEecCccccC---CCCCcccCC-------CCcccCCCCCCCCCchh
Q 044324 136 NEVYCDHAQSYDAVAVINRKVCQEN---GGINLMDFK-------GHKSCHGSYSTAAGWNY 186 (291)
Q Consensus 136 ~E~y~~~~~~Y~aVAVVkK~~~~~S---~~~~l~dLk-------GKksCHtG~~~taGW~i 186 (291)
...+. ..-++++| ++. + ++.+++||| ||+ +++..||..
T Consensus 84 ~~~~~---~~~~~l~V-~~~----~ae~~I~si~DLk~~~~~~~gk~-----~g~~~G~~~ 131 (298)
T 2rin_A 84 RENLA---GAKYTLAT-NAK----GAELGIKDFKDIAAHKDELDGKI-----YGIEPGNDG 131 (298)
T ss_dssp EEEEE---EEEEEEEE-EHH----HHHHTCCBGGGSGGGHHHHTSEE-----ECCSTTCHH
T ss_pred ccCCC---CCeEEEEE-chh----HHhcCCCCHHHHHHHHHHcCCeE-----ECCCCChHH
Confidence 22221 12355554 665 4 689999999 766 345567764
No 88
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=61.74 E-value=8.9 Score=34.72 Aligned_cols=31 Identities=13% Similarity=0.144 Sum_probs=24.7
Q ss_pred cceEEEecC---CHHHHHHHHhccCCcEEEeCCc
Q 044324 90 YTWKCVKRD---TAQECLDSARKGEADIINLEAG 120 (291)
Q Consensus 90 p~l~CV~~~---s~~dCm~~I~~g~ADiv~ld~~ 120 (291)
..|+-..+. +..+.+++|+.|.+|+..+.+.
T Consensus 36 i~i~v~~~g~Lg~~~~~~e~v~~G~id~~~~~~~ 69 (312)
T 2xwv_A 36 IEISLYPSSQLGDDRAMLKQLKDGSLDFTFAESA 69 (312)
T ss_dssp EEEEEECTTTTCCHHHHHHHHHHTSCCEEEECGG
T ss_pred EEEEEecCCCCCCHHHHHHHHHCCCceEEEeCch
Confidence 566666552 5689999999999999988765
No 89
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=59.83 E-value=4.8 Score=35.40 Aligned_cols=20 Identities=10% Similarity=0.021 Sum_probs=17.2
Q ss_pred cCCHHHHHHHHhccCCcEEE
Q 044324 97 RDTAQECLDSARKGEADIIN 116 (291)
Q Consensus 97 ~~s~~dCm~~I~~g~ADiv~ 116 (291)
..+..+.+.++++|++|++.
T Consensus 77 ~~~~~~~~~~l~~g~~D~~~ 96 (312)
T 1yae_A 77 NGQWNGMVRELIDHKADLAV 96 (312)
T ss_dssp TCCBCSHHHHHHTTSCSEEC
T ss_pred CCcchHHHHHHhCCCcCEEe
Confidence 35677899999999999985
No 90
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=58.75 E-value=5.6 Score=36.46 Aligned_cols=164 Identities=12% Similarity=0.044 Sum_probs=93.8
Q ss_pred CCCCceEEEecc-c---hHHHHHHHHHHhhcC-CCcceEEEecCCHHH--HHHHHhccCCc---EEEeCCce-ee---ee
Q 044324 60 GSEATIKWCAVR-D---QYEDCEYLVSIISQS-EDYTWKCVKRDTAQE--CLDSARKGEAD---IINLEAGL-AY---TA 125 (291)
Q Consensus 60 ~~~~~vRwCv~S-~---E~~KC~~l~~~a~~~-~~p~l~CV~~~s~~d--Cm~~I~~g~AD---iv~ld~~~-iy---~A 125 (291)
-|.+.||+=|.. . -..--..| ...+.. .+..+.-........ =++.+.++.+| ++....+. +. ..
T Consensus 14 ~P~kpi~liVp~~~GG~~D~~aR~l-a~~l~~~lg~~vvV~N~pGa~g~ig~~~v~~a~~DGytl~~~~~~~~~~~~~~~ 92 (312)
T 2f5x_A 14 YPERPVNMVVPFAAGGPTDNVARSL-AESMRPTLGETVVVENKGGAGGTIGTTQVARAQPDGYSILLMHAGFSTAPSLYK 92 (312)
T ss_dssp CCSSCEEEEESSCTTSHHHHHHHHH-HHHHHHHHSSCEEEEECCCGGGHHHHHHHHTSCSSSSEEEEEETHHHHGGGTCS
T ss_pred CCCCCEEEEEeeCCccHHHHHHHHH-HHHHHHHhCCCEEEEecCChHHHHHHHHHHhCCCCCcEEEEecCHHHHHHHHcC
Confidence 367889998875 2 12223333 322221 133444444433333 35888999998 65443332 11 11
Q ss_pred cccC----CcEEEEEEeecCCCceeEEEEEEecCccccCCCCCcccCCC------C--cccCCCCCCCCCchhHHHHHH-
Q 044324 126 FLNF----SMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMDFKG------H--KSCHGSYSTAAGWNYPVNHIK- 192 (291)
Q Consensus 126 ~~~~----~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dLkG------K--ksCHtG~~~taGW~iPvg~L~- 192 (291)
...| +++||.. .+ .+..|.||+++ +++.+++||.+ + +.-.+|.+++ .++-...|.
T Consensus 93 ~~~yd~~~df~pv~~-~~-----~~~~~lvv~~d----s~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~--~hl~~~~l~~ 160 (312)
T 2f5x_A 93 NPGYEPYTSFEPIGL-VV-----DVPMTIIARGD----FPPNNIKELAEYVKKNADKISLANAGIGAA--SHLCGTMLVE 160 (312)
T ss_dssp CCSSCTTTSEEEEEE-EE-----EEEEEEEECTT----CSCCSHHHHHHHHHHHGGGCEEEESSTTSH--HHHHHHHHHH
T ss_pred CCCCCcccccceeee-cc-----cCcEEEEEeCC----CCCCCHHHHHHHHHhCCCceEEeCCCCCcH--HHHHHHHHHH
Confidence 1122 5677753 22 34678889999 98999999975 2 3444444433 333333332
Q ss_pred hCCCCCCCCCCchhhhhhccccccCCCCCCCCCCCCcCCCCCCCCCCCCCCccCccccccccccCCCcEEEEechhhhhh
Q 044324 193 GSTPTFDSGKISDIEIASSFFSEVCAPGEFEGTGMCSGCGIENGSCHSNSLYFGDSGAFRCLVEELGDIAFVRGDTALLY 272 (291)
Q Consensus 193 ~~~~~c~~~~~~~~~~~s~FFs~SCvPG~~~~~~LC~lC~g~~~~C~~~e~Y~Gy~GAlrCL~eg~GDVAFVk~~tV~~~ 272 (291)
..|+.- ..-+|.|..-|+.=|..|.=|++|.....+..+
T Consensus 161 ~~Gi~~-----------------------------------------~~Vpy~G~~~a~~aL~~G~VD~~~~~~~~~~~~ 199 (312)
T 2f5x_A 161 ALGVNL-----------------------------------------LTIPYKGTAPAMNDLLGKQVDLMCDQTTNTTQQ 199 (312)
T ss_dssp HHTCCC-----------------------------------------EEEECSSHHHHHHHHHTTSSCEEEEEHHHHHHH
T ss_pred HHCCCe-----------------------------------------EEeccCChHHHHHHHHcCCccEEEechHHHHHH
Confidence 223311 012377778888889999999999998888887
Q ss_pred hcCCC
Q 044324 273 SKEGP 277 (291)
Q Consensus 273 ~~dg~ 277 (291)
.+.|+
T Consensus 200 i~~g~ 204 (312)
T 2f5x_A 200 ITSGK 204 (312)
T ss_dssp HHTTS
T ss_pred HHcCC
Confidence 75564
No 91
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis}
Probab=57.61 E-value=9.2 Score=35.05 Aligned_cols=119 Identities=13% Similarity=0.029 Sum_probs=74.4
Q ss_pred CceEEEecc-chHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCcee---eeecccCCcEEEEEEe
Q 044324 63 ATIKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLA---YTAFLNFSMKAIANEV 138 (291)
Q Consensus 63 ~~vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~i---y~A~~~~~L~PIl~E~ 138 (291)
.+||+=++. ....-=+...+..+...+..++-+.-+|+.+-.+++..|+.|+-.+.-... |...+.++|++|..-.
T Consensus 23 ~tIkVG~~~~p~~~il~~~~k~~l~k~Gi~veiv~F~Dy~~pN~AL~~G~IDaN~fQh~pyL~~~nk~~g~~Lv~v~~~~ 102 (275)
T 3gxa_A 23 KEIVFGTTVGDFGDMVKEQIQPELEKKGYTVKLVEFTDYVRPNLALAEGELDINVFQHKPYLDDFKKEHNLDITEVFQVP 102 (275)
T ss_dssp CEEEEEEETTHHHHHHHHTHHHHHHTTTCEEEEEEESSSSHHHHHHHHTSCSEEEEECHHHHHHHHHHHTCCEEEEEECC
T ss_pred CeEEEEEeCCChHHHHHHHHHHHHHHcCCeEEEEEeCCcHhHHHHHHcCCCCeeecCCHHHHHHHHHHcCCCEEEEeecc
Confidence 367776654 221110111122333457899999999999999999999999998866633 3333568888876332
Q ss_pred ecCCCceeEEEEEEecCccccCCCCCcccCC-CCcccCCCCCCCCCchhHHHHHHhCCC
Q 044324 139 YCDHAQSYDAVAVINRKVCQENGGINLMDFK-GHKSCHGSYSTAAGWNYPVNHIKGSTP 196 (291)
Q Consensus 139 y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dLk-GKksCHtG~~~taGW~iPvg~L~~~~~ 196 (291)
. .+ +++.-+. +.+++||+ |++..-|.- .+..-.-+..|.+.|+
T Consensus 103 ~--~p-----~glYS~k------iksl~dL~~Ga~IAIPnD--ptN~~RaL~lL~~aGL 146 (275)
T 3gxa_A 103 T--AP-----LGLYPGK------LKSLEEVKDGSTVSAPND--PSNFARVLVMLDELGW 146 (275)
T ss_dssp B--CC-----CEEEESS------CCCGGGCCTTCEEEEECS--HHHHHHHHHHHHHTTS
T ss_pred c--cc-----eEEecCC------CCCHHHcCCCCEEEecCC--ccHHHHHHHHHHHCCC
Confidence 2 22 2233344 78999998 999888653 2223333555666674
No 92
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=56.96 E-value=7.7 Score=35.45 Aligned_cols=31 Identities=10% Similarity=0.152 Sum_probs=22.9
Q ss_pred cceEEEecC---CHHHHHHHHhccCCcEEEeCCc
Q 044324 90 YTWKCVKRD---TAQECLDSARKGEADIINLEAG 120 (291)
Q Consensus 90 p~l~CV~~~---s~~dCm~~I~~g~ADiv~ld~~ 120 (291)
..|+-..+. +..+.+++|+.|.+|+..+.+.
T Consensus 42 i~i~v~~~g~Lg~~~~~~~av~~G~id~~~~~~~ 75 (327)
T 2hpg_A 42 VRIEVFPSSQLGVEEDIIEQIRMGAPVGWNTDSA 75 (327)
T ss_dssp EEEEEECCCCSCCCCCHHHHHHHTCSEEEEEEHH
T ss_pred EEEEEecCccCCCHHHHHHHHhCCCccEEEechH
Confidence 455555432 4578999999999999987653
No 93
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=56.09 E-value=6.5 Score=34.14 Aligned_cols=62 Identities=8% Similarity=-0.069 Sum_probs=35.1
Q ss_pred cCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEeecCCCc-eeEEEEEEecCccccCCCCCcccCCCC
Q 044324 97 RDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDHAQ-SYDAVAVINRKVCQENGGINLMDFKGH 171 (291)
Q Consensus 97 ~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y~~~~~-~Y~aVAVVkK~~~~~S~~~~l~dLkGK 171 (291)
..+..+++..+.+|++|++.-+-. +...+.-.+. +. .+. ....+.||+++ +.+.+++||+|+
T Consensus 91 ~~~~~~~~~~l~~g~~D~~~~~~~--~t~~R~~~~~------fs-~p~~~~~~~~~~~~~----~~~~~~~dl~~~ 153 (284)
T 2a5s_A 91 NNVWNGMIGEVVYQRAVMAVGSLT--INEERSEVVD------FS-VPFVETGISVMVSRG----TQVTGLSDKKFQ 153 (284)
T ss_dssp TTEECHHHHHHHTTSCSEECSSCB--CCHHHHTTEE------EC-CCCEEECEEEEEETT----CCCCSTTSHHHH
T ss_pred CCCHHHHHHHHhcCCcCEEEEEEE--EeccccceEE------ec-cCchhcCEEEEEECC----cccccccccccC
Confidence 346789999999999999863311 1111111111 11 111 22346777887 667777777643
No 94
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=55.74 E-value=20 Score=29.20 Aligned_cols=50 Identities=20% Similarity=0.142 Sum_probs=34.2
Q ss_pred eEEEecc-chHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCcee
Q 044324 65 IKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLA 122 (291)
Q Consensus 65 vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~i 122 (291)
.|++++. .... ..+ .. .+.+.=+...+..++++++.+|++|++..+...+
T Consensus 119 ~~i~v~~g~~~~--~~l-~~-----~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~~~~~ 169 (242)
T 3del_B 119 RSVAVQTGTYQE--AYL-QS-----LSEVHIRSFDSTLEVLMEVMHGKSPVAVLEPSIA 169 (242)
T ss_dssp SCEEEETTSHHH--HHH-HH-----STTCCEEEESSHHHHHHHHHTTSSSEEEECHHHH
T ss_pred CEEEEEcCcHHH--HHH-Hh-----CCCceEEEECCHHHHHHHHHcCCCCEEEecHHHH
Confidence 4677776 3322 233 22 1334455667999999999999999999987644
No 95
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=52.49 E-value=39 Score=26.54 Aligned_cols=100 Identities=11% Similarity=-0.025 Sum_probs=52.9
Q ss_pred CCceEEEecc-chHHHHHHHHHHhhcCCCc--ceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEe
Q 044324 62 EATIKWCAVR-DQYEDCEYLVSIISQSEDY--TWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEV 138 (291)
Q Consensus 62 ~~~vRwCv~S-~E~~KC~~l~~~a~~~~~p--~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~ 138 (291)
.+++|+-+.. ....-=..+ -..+...-| .++... .+..+.++++.+|++|++...... ....+...++..|.
T Consensus 4 ~g~l~Ig~~~~~~~~~l~~~-l~~f~~~~P~i~i~l~~-~~~~~l~~~l~~g~~Dl~i~~~~~---~~~~l~~~~l~~~~ 78 (209)
T 2ql3_A 4 AGPIAVGCYPALGPTILPSM-LYAFTAEYPRASVEFRE-DTQNRLRTQLEGGELDVAIVYDLD---LSPEWQTVPLMTRE 78 (209)
T ss_dssp CEEEEEEECGGGTTTTHHHH-HHHHHHHCTTEEEEEEE-CCHHHHHHHHHTTSCSEEEEESSS---CCTTEEEEEEEEEC
T ss_pred ceeEEEeechhhhhhhHHHH-HHHHHHHCCCceEEEEE-CcHHHHHHHHHcCCccEEEEecCC---CCCCceEEEeecCc
Confidence 3567887665 332211122 112222224 444443 467889999999999998764321 11112223444332
Q ss_pred ecCCCceeEEEEEEecCc-cccCC-CCCcccCCCCcccC
Q 044324 139 YCDHAQSYDAVAVINRKV-CQENG-GINLMDFKGHKSCH 175 (291)
Q Consensus 139 y~~~~~~Y~aVAVVkK~~-~~~S~-~~~l~dLkGKksCH 175 (291)
+ |+|+.++. .+... ..+++||++...-.
T Consensus 79 ~---------~~v~~~~hpl~~~~~~~~~~~l~~~~~i~ 108 (209)
T 2ql3_A 79 P---------MVVLGAEHPLAGVDGPVRLADLAEHPMVL 108 (209)
T ss_dssp C---------EEEEETTCGGGGCCSCBCGGGGTTSCEEE
T ss_pred e---------EEEEeCCCccccCCCCcCHHHHhCCCEEe
Confidence 2 56677762 11112 46889999877654
No 96
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=51.37 E-value=49 Score=27.48 Aligned_cols=56 Identities=13% Similarity=0.010 Sum_probs=33.0
Q ss_pred CCCceEEEecc-chHHHHHHHHHHhhcCC--CcceEEEecCCHHHHHHHHhccCCcEEEeCC
Q 044324 61 SEATIKWCAVR-DQYEDCEYLVSIISQSE--DYTWKCVKRDTAQECLDSARKGEADIINLEA 119 (291)
Q Consensus 61 ~~~~vRwCv~S-~E~~KC~~l~~~a~~~~--~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~ 119 (291)
...++|+-+.. ... -=..+ -..|... +..++... .+..+.++++.+|++|++....
T Consensus 26 ~~g~l~Ig~~~~~~~-~l~~~-l~~f~~~~P~i~v~i~~-~~~~~~~~~l~~g~~Di~i~~~ 84 (290)
T 1twy_A 26 QASEITISGSTSVAR-IMDVL-AEKYNQQHPETYVAVQG-VGSTAGISLLKKGVADIAMTSR 84 (290)
T ss_dssp --CEEEEEECHHHHH-HHHHH-HHHHHHHCTTCEEEEEE-SCHHHHHHHHHTTSCSEEEESS
T ss_pred cCCCEEEecCcchHH-HHHHH-HHHHHhhCCCceEEEEe-cCcHHHHHHHhcCCCcEEEecC
Confidence 34678887766 332 11111 1223222 24566544 4678999999999999998754
No 97
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=49.86 E-value=55 Score=26.35 Aligned_cols=103 Identities=10% Similarity=-0.046 Sum_probs=55.4
Q ss_pred CCCceEEEecc-chHHHHHHHHHHhhcCCCcc--eEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEE
Q 044324 61 SEATIKWCAVR-DQYEDCEYLVSIISQSEDYT--WKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANE 137 (291)
Q Consensus 61 ~~~~vRwCv~S-~E~~KC~~l~~~a~~~~~p~--l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E 137 (291)
..+++|+.+.. ....-=..+ -..|...-|. ++-.. .+..+.++++.+|++|++....... ....+...++..|
T Consensus 12 ~~g~lrIg~~~~~~~~~l~~~-l~~f~~~~P~v~l~l~~-~~~~~~~~~l~~g~~Dl~i~~~~~~--~~~~l~~~~l~~~ 87 (228)
T 2fyi_A 12 TSGVLTIATTHTQARYSLPEV-IKAFRELFPEVRLELIQ-GTPQEIATLLQNGEADIGIASERLS--NDPQLVAFPWFRW 87 (228)
T ss_dssp CCEEEEEEECHHHHHHTHHHH-HHHHHHHCTTEEEEEEE-CCHHHHHHHHHHTSCSEEEESSSST--TCTTEEEEEEEEE
T ss_pred CcceEEEeeccchHHHHHHHH-HHHHHHHCCCcEEEEEe-CCHHHHHHHHHcCCccEEEEecccC--CCCCceEEEeeec
Confidence 45689998876 433322222 2223222344 44433 4678999999999999998753210 0111222344322
Q ss_pred eecCCCceeEEEEEEecCc-cccCCCCCcccCCCCcccCC
Q 044324 138 VYCDHAQSYDAVAVINRKV-CQENGGINLMDFKGHKSCHG 176 (291)
Q Consensus 138 ~y~~~~~~Y~aVAVVkK~~-~~~S~~~~l~dLkGKksCHt 176 (291)
.-+.|+.++- .+.....+++||++.+.-..
T Consensus 88 ---------~~~~v~~~~hpla~~~~i~~~dL~~~~~i~~ 118 (228)
T 2fyi_A 88 ---------HHSLLVPHDHPLTQISPLTLESIAKWPLITY 118 (228)
T ss_dssp ---------CEEEEEETTCGGGTSSSCCHHHHTTSCEEEE
T ss_pred ---------ceEEEecCCCCccccCccCHHHHcCCCeEEe
Confidence 2266677761 11112467888888775543
No 98
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=49.54 E-value=19 Score=31.40 Aligned_cols=58 Identities=9% Similarity=0.045 Sum_probs=34.4
Q ss_pred CHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEeecCCCc-eeEEEEEEecCccccCCCCCcccCC
Q 044324 99 TAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYCDHAQ-SYDAVAVINRKVCQENGGINLMDFK 169 (291)
Q Consensus 99 s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y~~~~~-~Y~aVAVVkK~~~~~S~~~~l~dLk 169 (291)
+..+.+..+.+|++|++...-. +...+.-.+. +. .+. ....+.+++|+ +.+.+++||+
T Consensus 105 ~w~~~~~~l~~g~~D~~~~~~~--~t~~R~~~~~------fs-~Py~~~~~~i~~~~~----~~i~~~~dl~ 163 (292)
T 1pb7_A 105 EWNGMMGELLSGQADMIVAPLT--INNERAQYIE------FS-KPFKYQGLTILVKKG----TRITGINDPR 163 (292)
T ss_dssp EECHHHHHHHHTSCSEECSSCB--CCHHHHTTEE------EC-SCSEEEEEEEEEETT----CCCCSTTCHH
T ss_pred cHHHHHHHHHcCCcCEEEeeeE--ecHHHhcceE------ec-hhhHhcCeEEEEECC----cCCCCCcCcc
Confidence 5678999999999999853211 1111111111 11 111 22346777888 7788999998
No 99
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=49.16 E-value=52 Score=24.90 Aligned_cols=59 Identities=15% Similarity=0.110 Sum_probs=42.2
Q ss_pred CCCceEEEeccchHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCc
Q 044324 61 SEATIKWCAVRDQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAG 120 (291)
Q Consensus 61 ~~~~vRwCv~S~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~ 120 (291)
....+|+=++.....-...| ...+...+....+....+..+.++.+++...|++.+|-.
T Consensus 17 ~~~m~~iLivdd~~~~~~~l-~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~ 75 (150)
T 4e7p_A 17 RGSHMKVLVAEDQSMLRDAM-CQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVE 75 (150)
T ss_dssp ---CEEEEEECSCHHHHHHH-HHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSS
T ss_pred CCCccEEEEEcCCHHHHHHH-HHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCC
Confidence 44578888888444455566 444444334477888889999999999999999999865
No 100
>3tqw_A Methionine-binding protein; transport and binding proteins, transport protein; HET: MSE; 2.00A {Coxiella burnetii}
Probab=46.52 E-value=23 Score=31.73 Aligned_cols=93 Identities=11% Similarity=0.064 Sum_probs=64.6
Q ss_pred CcceEEEecCCHHHHHHHHhccCCcEEEeCCce---eeeecccCCcEEEEEEeecCCCceeEEEEEEecCccccCCCCCc
Q 044324 89 DYTWKCVKRDTAQECLDSARKGEADIINLEAGL---AYTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINL 165 (291)
Q Consensus 89 ~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~---iy~A~~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l 165 (291)
+..++-+.-+|+.+=.+++..|+.|+-.+.-.. .|...+.++|++|..-... + .++.-+. +.++
T Consensus 30 Gi~veiv~F~Dy~~pN~AL~~G~iDaN~fQh~pyl~~~~k~~g~~lv~v~~~~~~--p-----~glYS~k------~ksl 96 (240)
T 3tqw_A 30 GLHVNIITFSDYNTPNEALADGSVDANMFQHLPYLKAQIEMRGYKIVSIGKTFVY--P-----MGLYSKK------ITAL 96 (240)
T ss_dssp CCCEEEEEESCTTSHHHHHHTTSCSEEEEEEHHHHHHHHHHHCCCEEEEEEEEEC--C-----CEEECSS------CSSG
T ss_pred CCeEEEEEeCChHhHHHHHHcCCcCeeccCCHHHHHHHHHHCCCCEEEEeecccc--c-----eEEecCC------CCCH
Confidence 678999999999999999999999999886542 2333456888887643332 2 2232233 8899
Q ss_pred ccCC-CCcccCCCCCCCCCchhHHHHHHhCCC
Q 044324 166 MDFK-GHKSCHGSYSTAAGWNYPVNHIKGSTP 196 (291)
Q Consensus 166 ~dLk-GKksCHtG~~~taGW~iPvg~L~~~~~ 196 (291)
+||+ |++..-+-- ++..-.-+..|.+.|+
T Consensus 97 ~dL~~Ga~Iaipnd--~tn~~RaL~lL~~aGL 126 (240)
T 3tqw_A 97 TQLKTGAKIAVPSD--PSNEARALLLLEKAQL 126 (240)
T ss_dssp GGCCTTCEEEEECS--HHHHHHHHHHHHHTTS
T ss_pred HHhcCCCEEEEecC--ccHHHHHHHHHHHCCC
Confidence 9999 999887643 3333333556667774
No 101
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=46.09 E-value=23 Score=29.19 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=26.7
Q ss_pred ceEEEecCCHHHHHHHHhccCCcEEEeCCcee
Q 044324 91 TWKCVKRDTAQECLDSARKGEADIINLEAGLA 122 (291)
Q Consensus 91 ~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~i 122 (291)
.+.-+...+..++++++.+|++|++..+...+
T Consensus 159 ~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~ 190 (268)
T 3qax_A 159 GICVRSFDSTLEVIMEVRYGKSPVAVLEPSVG 190 (268)
T ss_dssp TCCEEEESCHHHHHHHHHTTSSSEEEECHHHH
T ss_pred CceEEecCCHHHHHHHHHcCCCCEEEecHHHH
Confidence 45555667899999999999999999987754
No 102
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=45.26 E-value=1.2e+02 Score=26.31 Aligned_cols=111 Identities=9% Similarity=0.042 Sum_probs=62.1
Q ss_pred ceEEEecc-chHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEE---eCC--ceeeeecccCCcEEEEEE
Q 044324 64 TIKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIIN---LEA--GLAYTAFLNFSMKAIANE 137 (291)
Q Consensus 64 ~vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~---ld~--~~iy~A~~~~~L~PIl~E 137 (291)
+|++=..+ .|..-=..|.+..+...+.+++=+.+ +..-.++++.+|++|+.. +.. ..+|... ..+|+- +..
T Consensus 3 ~I~ig~~~w~e~~i~~~i~~~~Le~~G~~Ve~~~~-~~~~~~~al~~G~iD~~~e~w~~~~~~~~~~~~-~~~l~~-l~~ 79 (256)
T 3l6g_A 3 KVDLVYMNWDSEVASINVLTQAMKEHGFDVKTTAL-DNAVAWQTVANGQADGMVSAWLPNTHKTQWQKY-GKSVDL-LGP 79 (256)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHHHTTEEEEEEEC-CHHHHHHHHHTTSSSEEEEEEETTTTHHHHHHH-GGGEEE-EEE
T ss_pred CEEEEecCCcHHHHHHHHHHHHHHHCCCceEEEEC-ChHHHHHHHHCCCCeEEEcccCCcccHHHHHHh-CCceEE-ccc
Confidence 45555555 44433334434444444666776665 688899999999999964 332 2333321 123432 222
Q ss_pred eecCCCceeEEEEEEecCccccCCCCCcccCCCCcccCCCCCCCCCchh
Q 044324 138 VYCDHAQSYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNY 186 (291)
Q Consensus 138 ~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dLkGKksCHtG~~~taGW~i 186 (291)
.+. ...++++| ++. .++.+++||+.+- =.-=++...||..
T Consensus 80 ~~~---~~~~~l~V-p~~----~~i~si~DL~~~~-~g~~~g~~~G~~~ 119 (256)
T 3l6g_A 80 NLK---GAKVGFVV-PSY----MNVNSIEDLTNQA-NKTITGIEPGAGV 119 (256)
T ss_dssp EEE---EEEEEEEE-ETT----SCCCBGGGCSSGG-GGEEECCCTTCHH
T ss_pred cCC---CceEEEEE-CCc----cCCCCHHHHHHhc-CCeEEecCCCchh
Confidence 221 13466766 666 5689999997321 1112356678863
No 103
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A {Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A* 3tel_A* 4de8_A*
Probab=45.24 E-value=12 Score=35.77 Aligned_cols=44 Identities=11% Similarity=0.072 Sum_probs=33.1
Q ss_pred eeEEEEEEecCccccCCCCCcccCCCCcccCCCCCCCCCchhHHHHHHhC
Q 044324 145 SYDAVAVINRKVCQENGGINLMDFKGHKSCHGSYSTAAGWNYPVNHIKGS 194 (291)
Q Consensus 145 ~Y~aVAVVkK~~~~~S~~~~l~dLkGKksCHtG~~~taGW~iPvg~L~~~ 194 (291)
.|..+.||+|+ |.+.+++||+| ..-.--....++..++..|.++
T Consensus 15 ~~~~~vvV~kd----s~i~sl~DLkg--vgv~~~~~~~~~~~~~~~i~~~ 58 (398)
T 2xxp_A 15 EYSLSVAVLAD----SEIENVTQLTS--VTAPTGTDNENIQKLLADIKSS 58 (398)
T ss_dssp CEEEEEEEETT----CSCCSGGGCSE--EEECTTTSHHHHHHHHHHHHHH
T ss_pred EEEEEEEEECC----CCcCCHHHhcC--eeeECCCCHHHHHHHHHHHHHh
Confidence 57788888999 88999999998 3333333456788888877654
No 104
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=44.83 E-value=46 Score=28.38 Aligned_cols=101 Identities=14% Similarity=0.042 Sum_probs=55.5
Q ss_pred CCceEEEecc-chHHHHHHHHHHhhcCCCcc--eEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEe
Q 044324 62 EATIKWCAVR-DQYEDCEYLVSIISQSEDYT--WKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEV 138 (291)
Q Consensus 62 ~~~vRwCv~S-~E~~KC~~l~~~a~~~~~p~--l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~ 138 (291)
.+++|+.+.. ....--..+ -..+....|. |.... .+..+.++.+.+|++|++.......... ..+...++..|
T Consensus 91 ~g~l~I~~~~~~~~~~l~~~-l~~f~~~~P~i~i~l~~-~~~~~~~~~l~~g~~Dlai~~~~~~~~~-~~l~~~~L~~~- 166 (305)
T 3fxq_A 91 EGHITFAASPAIALAALPLA-LASFAREFPDVTVNVRD-GMYPAVSPQLRDGTLDFALTAAHKHDID-TDLEAQPLYVS- 166 (305)
T ss_dssp HTEEEEEECHHHHHTHHHHH-HHHHHHHCTTCEEEEEE-CCTTTTHHHHHHTSSSEEEEECCGGGSC-TTEEEEEEEEC-
T ss_pred CceEEEEechHHHHHHHHHH-HHHHHHHCCCCEEEEEE-CCHHHHHHHHHcCCCCEEEecCCCCCCc-cCeeEEEeecC-
Confidence 4678998877 443332222 2223222344 44443 3567889999999999998644321100 11222344322
Q ss_pred ecCCCceeEEEEEEecCccccCC---CCCcccCCCCcccCCCC
Q 044324 139 YCDHAQSYDAVAVINRKVCQENG---GINLMDFKGHKSCHGSY 178 (291)
Q Consensus 139 y~~~~~~Y~aVAVVkK~~~~~S~---~~~l~dLkGKksCHtG~ 178 (291)
..|.|+.++ .+ ..+++||.+...-....
T Consensus 167 --------~~~~v~~~~----hpla~~~~~~dL~~~~~i~~~~ 197 (305)
T 3fxq_A 167 --------DVVIVGQRQ----HPMANATRLAELQECRWAFSSA 197 (305)
T ss_dssp --------CEEEEEETT----CTTTTCCSGGGGTTSEEEEECC
T ss_pred --------cEEEEEcCC----CCCCCCCCHHHHhCCCeEeeCC
Confidence 236677777 32 24788888877655443
No 105
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=44.69 E-value=14 Score=31.22 Aligned_cols=52 Identities=21% Similarity=0.061 Sum_probs=37.0
Q ss_pred ceEEEecc-chHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCcee
Q 044324 64 TIKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLA 122 (291)
Q Consensus 64 ~vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~i 122 (291)
..|++++. .... ..+ ... .+.+.=+...+..++++++.+|++|++..+...+
T Consensus 139 g~~i~v~~g~~~~--~~l-~~~----~~~~~~~~~~~~~~~l~~L~~GrvDa~i~~~~~~ 191 (267)
T 3mpk_A 139 GRTVALVRNSAAI--PLL-QRR----YPQAKVVTADNPSEAMLMVANGQADAVVQTQISA 191 (267)
T ss_dssp TCEEEEETTCTHH--HHH-HHH----CTTSEEEEESSHHHHHHHHHHTSCSEEEEEHHHH
T ss_pred CCEEEEeCCchhH--HHH-HHh----CCCcEEEEeCCHHHHHHHHHcCCCCEEEecHHHH
Confidence 46888887 4332 233 222 2456667778999999999999999999986543
No 106
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=43.22 E-value=8.4 Score=32.28 Aligned_cols=50 Identities=10% Similarity=0.096 Sum_probs=34.8
Q ss_pred eEEEecc-chHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCce
Q 044324 65 IKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGL 121 (291)
Q Consensus 65 vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~ 121 (291)
.|+++.. ..... .+ ... .+...=+.-.+..++++++.+|++|++..+..-
T Consensus 124 ~~i~v~~g~~~~~--~l-~~~----~~~~~i~~~~~~~~~~~~l~~GrvD~~~~d~~~ 174 (243)
T 4h5g_A 124 ANIAAQKGTVPES--MV-KEQ----LPKAQLTSLTNMGEAVNELQAGKIDAVHMDEPV 174 (243)
T ss_dssp SEEEEETTSHHHH--HH-HHH----CTTSEEEEESCHHHHHHHHHHTSCSEEEEEHHH
T ss_pred CEEEecCCcHHHH--HH-HHh----cccceeEEeCCHHHHHHHHHcCCccEEEecHHH
Confidence 4777777 43332 22 221 244566777899999999999999999987653
No 107
>3k2d_A ABC-type metal ION transport system, periplasmic; alpha/beta domain, immune system; 2.60A {Vibrio vulnificus}
Probab=41.44 E-value=15 Score=32.86 Aligned_cols=93 Identities=6% Similarity=-0.015 Sum_probs=64.1
Q ss_pred CcceEEEecCCHHHHHHHHhccCCcEEEeCCcee---eeecccCCcEEEEEEeecCCCceeEEEEEEecCccccCCCCCc
Q 044324 89 DYTWKCVKRDTAQECLDSARKGEADIINLEAGLA---YTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINL 165 (291)
Q Consensus 89 ~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~i---y~A~~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l 165 (291)
+..++-+.-+|+.+=.+++..|+.|+-.+.-... |...+.+.|++|..-.. .+ .++.-+ .+.++
T Consensus 33 Gi~veiv~F~Dy~~pN~AL~~G~IDaN~fQh~pyL~~~nk~~g~~lv~v~~~~~--~p-----~glYS~------k~ksl 99 (237)
T 3k2d_A 33 GLDVELVTFTDYVTPNAALDDGSIDMNAFQHKPYLDRQVEDRDYKLTIAGNTFV--YP-----IAGYSK------QVKSV 99 (237)
T ss_dssp CCCEEEEEESCTTSHHHHHHHTSCSEEEEEEHHHHHHHHHHHCCCEEEEEECCC--CC-----CEEECS------SCSCS
T ss_pred CCEEEEEEeCChHhHHHHHHcCCCCeeccCCHHHHHHHHHHCCCCEEEEeeecc--cc-----eEEecC------CCCCH
Confidence 6789999999999999999999999998865532 33335688888753222 12 233323 38899
Q ss_pred ccCC-CCcccCCCCCCCCCchhHHHHHHhCCC
Q 044324 166 MDFK-GHKSCHGSYSTAAGWNYPVNHIKGSTP 196 (291)
Q Consensus 166 ~dLk-GKksCHtG~~~taGW~iPvg~L~~~~~ 196 (291)
+||+ |++..-|.- .+..-.=+..|.+.|+
T Consensus 100 ~dL~~Ga~IaipnD--~tN~~RaL~lL~~aGL 129 (237)
T 3k2d_A 100 AALADGVRIAVPND--PTNLGRSLLLLEQQGL 129 (237)
T ss_dssp TTCCTTCEEEEECS--HHHHHHHHHHHHHTTS
T ss_pred HHhcCCCEEEecCC--ccHHHHHHHHHHHCCC
Confidence 9999 999887643 3333333556666774
No 108
>2i6e_A Hypothetical protein; NYSGXRC,10093B, structural genomics, PSI-2, protein structure initiative; 2.50A {Deinococcus radiodurans} SCOP: c.94.1.1
Probab=40.61 E-value=26 Score=31.54 Aligned_cols=85 Identities=12% Similarity=0.065 Sum_probs=50.5
Q ss_pred ecCCHHHHHHHHhccCCcEEEeCCceeeeec-ccCCcEEEEEEeecCCCceeEEEEEEecCccccCCCCCcccCCCCccc
Q 044324 96 KRDTAQECLDSARKGEADIINLEAGLAYTAF-LNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMDFKGHKSC 174 (291)
Q Consensus 96 ~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~-~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dLkGKksC 174 (291)
...+.++..+++..|+.|+..+..- .|... ..|.+.|.+.-.-. + .-++|.||+++ . ++|| ||..
T Consensus 43 ~~~~p~~L~~~l~~G~lDi~~vs~~-~~~~~~~~~~~l~~~~i~a~-g--~v~s~~lv~~~----~----i~~L--k~Va 108 (301)
T 2i6e_A 43 ITGVPTQMNAALLSGEVDIANVSAV-EFIRHADTLAALPDFSVAVL-G--PVYSVNLFHTC----P----LPEL--RRVA 108 (301)
T ss_dssp EECCHHHHHHHHHHSSCSEEEEEHH-HHHHTTTTEEEEEEEEEEES-S--CCSSEEEEESS----C----GGGC--CEEE
T ss_pred EECCHHHHHHHHHCCCCCEEEeCHH-HHHhhhCcEEEecCeEEEee-C--CcceEEEEeCC----C----HHHc--CEEE
Confidence 4567789999999999999988443 34332 23445554432221 1 12456666665 2 4578 9998
Q ss_pred CCCCCCCCCchhHHHH-HHhCCC
Q 044324 175 HGSYSTAAGWNYPVNH-IKGSTP 196 (291)
Q Consensus 175 HtG~~~taGW~iPvg~-L~~~~~ 196 (291)
-++-+.++ ..+ +.. |.+.|+
T Consensus 109 ~~~~s~t~-~~L-l~~lL~~~Gl 129 (301)
T 2i6e_A 109 LTSQSAMS-VAL-LEVLLRQKGL 129 (301)
T ss_dssp ECTTCHHH-HHH-HHHHHHHTTC
T ss_pred ECCCChHH-HHH-HHHHHHHCCC
Confidence 88855443 333 333 555564
No 109
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=40.10 E-value=27 Score=28.85 Aligned_cols=52 Identities=6% Similarity=-0.064 Sum_probs=36.4
Q ss_pred ceEEEecc-chHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCcee
Q 044324 64 TIKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLA 122 (291)
Q Consensus 64 ~vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~i 122 (291)
..|++++. ... -..+ .... +.+.-+...+..++++++.+|++|++..+...+
T Consensus 130 g~~i~v~~g~~~--~~~l-~~~~----~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~ 182 (249)
T 4f3p_A 130 GKVIAAKTGTAT--IDWI-KAHL----KPKEIRQFPNIDQAYLALEAGRVDAAMHDTPNV 182 (249)
T ss_dssp TSEEEEETTSHH--HHHH-HHHC----CCSEEEEESSHHHHHHHHHTTSSSEEEEEHHHH
T ss_pred CCEEEEeCCChH--HHHH-HhcC----CCceEEEcCCHHHHHHHHHcCCeeEEEeCcHHH
Confidence 34777776 332 2344 3222 345667778999999999999999999887654
No 110
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=39.48 E-value=41 Score=29.05 Aligned_cols=98 Identities=10% Similarity=0.003 Sum_probs=50.3
Q ss_pred CCceEEEecc-chHHHHHHHHHHhhcCCCcceEEE-ecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEee
Q 044324 62 EATIKWCAVR-DQYEDCEYLVSIISQSEDYTWKCV-KRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVY 139 (291)
Q Consensus 62 ~~~vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV-~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y 139 (291)
.+++|+.+.. ....-=..+ -..+....|.+.-. ...+..+.++++.+|++|++....... ...+...++..|.
T Consensus 104 ~~~l~Ig~~~~~~~~~l~~~-l~~f~~~~P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~---~~~l~~~~l~~~~- 178 (315)
T 1uth_A 104 TRTFNLAMTDIGEMYFMPPL-MEALAQRAPHIQISTLRPNAGNLKEDMESGAVDLALGLLPEL---QTGFFQRRLFRHR- 178 (315)
T ss_dssp CCEEEEECCHHHHHHHHHHH-HHHHHHHCTTCEEEEECTTSSCHHHHHHHTSCCEEEECCTTC---CTTEEEEEEEEEC-
T ss_pred ceEEEEEechHHHHHHHHHH-HHHHHHHCCCcEEEEEeCCcccHHHHHHCCCCCEEEecCCCC---CCCceEEEeeccc-
Confidence 5689998876 433222222 12233223444332 233567899999999999998754321 1112223444222
Q ss_pred cCCCceeEEEEEEecCccccCCCCCcccCCCCc
Q 044324 140 CDHAQSYDAVAVINRKVCQENGGINLMDFKGHK 172 (291)
Q Consensus 140 ~~~~~~Y~aVAVVkK~~~~~S~~~~l~dLkGKk 172 (291)
.+.|+.++.-......+++||.+..
T Consensus 179 --------~~~v~~~~hpl~~~~i~~~dL~~~~ 203 (315)
T 1uth_A 179 --------YVCMFRKDHPSAKSPMSLKQFSELE 203 (315)
T ss_dssp --------EEEEEETTCSSCCSSCCHHHHHHSE
T ss_pred --------eEEEEeCCCCCcCCCCCHHHHhcCC
Confidence 2556677610000234667776654
No 111
>3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein binding; 2.15A {Neisseria meningitidis}
Probab=39.46 E-value=51 Score=29.53 Aligned_cols=97 Identities=13% Similarity=0.041 Sum_probs=65.8
Q ss_pred hcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCcee---eeecccCCcEEEEEEeecCCCceeEEEEEEecCccccCC
Q 044324 85 SQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLA---YTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENG 161 (291)
Q Consensus 85 ~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~i---y~A~~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~ 161 (291)
+...+..++-+.-+|+.+=.+++.+|+.|+-.+.-... |...+.++|++|..-.. .+. ++--+.
T Consensus 24 l~k~Gi~leiv~F~Dy~~pN~AL~~G~iDaN~fQh~pyL~~~nk~~g~~Lv~v~~~~~--~p~-----glYS~k------ 90 (245)
T 3ir1_A 24 LEKKGYTVKLVEFTDYVRPNLALAEGELDINVFQHKPYLDDFKKEHNLDITEVFQVPT--APL-----GLYPGK------ 90 (245)
T ss_dssp HHTTTCEEEEEEESSSSHHHHHHHHTSCSEEEEECHHHHHHHHHHHTCCEEEEEECCB--CCC-----EEEESS------
T ss_pred HHHcCceEEEEEeCCcHhHHHHHHCCCcCeeccCCHHHHHHHHHHcCCCEEEEeeecc--cce-----EEecCC------
Confidence 33457899999999999999999999999998866532 33335788888753222 222 222333
Q ss_pred CCCcccCC-CCcccCCCCCCCCCchhHHHHHHhCCC
Q 044324 162 GINLMDFK-GHKSCHGSYSTAAGWNYPVNHIKGSTP 196 (291)
Q Consensus 162 ~~~l~dLk-GKksCHtG~~~taGW~iPvg~L~~~~~ 196 (291)
+.+++||+ |++..-|.- .+..-.-+..|.+.|+
T Consensus 91 ~ksl~dl~~Ga~IaIPnD--ptN~~RaL~lL~~aGL 124 (245)
T 3ir1_A 91 LKSLEEVKDGSTVSAPND--PSNFARVLVMLDELGW 124 (245)
T ss_dssp CCCGGGCCTTCEEEEECS--HHHHHHHHHHHHHTTS
T ss_pred CCCHHHcCCCCEEEecCC--ccHHHHHHHHHHHCCC
Confidence 78999999 999887643 3333333555666774
No 112
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=39.30 E-value=51 Score=26.53 Aligned_cols=100 Identities=9% Similarity=-0.020 Sum_probs=51.9
Q ss_pred CCCceEEEecc-chHH-HHHHHHHHhhcCCCc--ceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEE
Q 044324 61 SEATIKWCAVR-DQYE-DCEYLVSIISQSEDY--TWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIAN 136 (291)
Q Consensus 61 ~~~~vRwCv~S-~E~~-KC~~l~~~a~~~~~p--~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~ 136 (291)
...++|+-+.. .... -=..+ . .+....| .++... .+..+.++.+.+|++|++...... ....+...++..
T Consensus 28 ~~g~l~Ig~~~~~~~~~l~~~l-~-~f~~~~P~v~l~~~~-~~~~~~~~~l~~g~~Dl~i~~~~~---~~~~l~~~~l~~ 101 (238)
T 2hxr_A 28 TRGSLRIAVTPTFTSYFIGPLM-A-DFYARYPSITLQLQE-MSQEKIEDMLCRDELDVGIAFAPV---HSPELEAIPLLT 101 (238)
T ss_dssp ---CEEEEECHHHHTTTHHHHH-H-HHHHHCTTSCEEEEE-CCHHHHHHHHHTTSCSEEEEESSC---CCTTEEEEEEEE
T ss_pred cCCeEEEeechhhHHHHHHHHH-H-HHHHhCCCcEEEEEE-CCHHHHHHHHHcCCCcEEEEcCCC---Ccccceeeeecc
Confidence 34678998766 3221 11222 1 1222123 455544 367889999999999998864321 111122234432
Q ss_pred EeecCCCceeEEEEEEecCc-cccCCCCCcccCCCCcccC
Q 044324 137 EVYCDHAQSYDAVAVINRKV-CQENGGINLMDFKGHKSCH 175 (291)
Q Consensus 137 E~y~~~~~~Y~aVAVVkK~~-~~~S~~~~l~dLkGKksCH 175 (291)
| ..+.|+.++. .+.....+++||++-..-.
T Consensus 102 ~---------~~~~v~~~~hpl~~~~~i~~~dl~~~~~i~ 132 (238)
T 2hxr_A 102 E---------SLALVVAQHHPLAVHEQVALSRLHDEKLVL 132 (238)
T ss_dssp E---------EEEEEEETTSGGGGCSEECGGGGGGCEEEE
T ss_pred C---------cEEEEEcCCCcccccCCCCHHHHhcCCeEE
Confidence 2 3366777761 0111235788888876544
No 113
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=39.28 E-value=40 Score=27.62 Aligned_cols=48 Identities=21% Similarity=0.192 Sum_probs=34.8
Q ss_pred EEEecc-chHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCcee
Q 044324 66 KWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLA 122 (291)
Q Consensus 66 RwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~i 122 (291)
|++++. .... ..+ ... .+.-+...+..++++++.+|++|++..+...+
T Consensus 108 ~igv~~g~~~~--~~l-~~~------~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~ 156 (232)
T 3i6v_A 108 IVAAQTATIQA--GYI-AES------GATLVEFATPEETIAAVRNGEADAVFADRDYL 156 (232)
T ss_dssp EEEEETTSHHH--HHH-HHS------SSEEEEESSHHHHHHHHHTTSSSEEEEEHHHH
T ss_pred CEEEecCchHH--HHH-Hhc------CCeEEEeCCHHHHHHHHHcCCcCEEEEChHHH
Confidence 888887 4321 234 221 35566778999999999999999999887643
No 114
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=39.09 E-value=28 Score=29.17 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=25.6
Q ss_pred eEEEecCCHHHHHHHHhccCCcEEEeCCcee
Q 044324 92 WKCVKRDTAQECLDSARKGEADIINLEAGLA 122 (291)
Q Consensus 92 l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~i 122 (291)
+.-+...+..++++++.+|++|++..+...+
T Consensus 165 ~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~ 195 (259)
T 4dz1_A 165 SKVKLYPTYNETMADLKNGNLDLAFIEEPVY 195 (259)
T ss_dssp GGCEEESSHHHHHHHHHHTSCSEEEEEHHHH
T ss_pred ceeEecCCHHHHHHHHHcCCCCEEEecHHHH
Confidence 4445667899999999999999999987653
No 115
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=38.04 E-value=1.3e+02 Score=24.21 Aligned_cols=80 Identities=10% Similarity=-0.043 Sum_probs=45.1
Q ss_pred CCCCceEEEecc-chHHHHHHHHHHhhcCCC--cceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEE
Q 044324 60 GSEATIKWCAVR-DQYEDCEYLVSIISQSED--YTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIAN 136 (291)
Q Consensus 60 ~~~~~vRwCv~S-~E~~KC~~l~~~a~~~~~--p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~ 136 (291)
...+++|+.+.. ....-=..+ -..+.... ..++... .+..+.++++.+|++|++...... ..+...++..
T Consensus 24 ~~~g~l~Ig~~~~~~~~~l~~~-l~~f~~~~P~i~l~i~~-~~~~~~~~~L~~g~~Dl~i~~~~~-----~~~~~~~l~~ 96 (238)
T 3onm_A 24 NMEGSLIIGASDDTADTLLPFL-LNRVATLYPRLAIDVRV-KRSPFIADMLSSGEVDLAITTAKV-----DSHPHVILRT 96 (238)
T ss_dssp ---CCEEEEECHHHHTTHHHHH-HHHHHHHCTTCCEEEEE-CCHHHHHHHHHHTSCSEEEECSCC------CCCEEEEEE
T ss_pred CCceeEEEeccchhhHHHHHHH-HHHHHHHCCCcEEEEEE-CCHHHHHHHHHCCCccEEEEecCC-----CCcceEEeec
Confidence 355689998877 433222222 12222222 3555554 467899999999999999875531 1244445543
Q ss_pred EeecCCCceeEEEEEEecC
Q 044324 137 EVYCDHAQSYDAVAVINRK 155 (291)
Q Consensus 137 E~y~~~~~~Y~aVAVVkK~ 155 (291)
|. .++|+.++
T Consensus 97 ~~---------~~~v~~~~ 106 (238)
T 3onm_A 97 SP---------TLWYCSVD 106 (238)
T ss_dssp EC---------EEEEEETT
T ss_pred CC---------EEEEEcCC
Confidence 32 26777777
No 116
>3up9_A Putative uncharacterized protein; membrane lipoprotein, L-methionine binding protein, NLPA LIP structural genomics; HET: PG4 PE4; 2.35A {Actinomyces odontolyticus} SCOP: c.94.1.0
Probab=37.87 E-value=19 Score=32.29 Aligned_cols=93 Identities=11% Similarity=0.015 Sum_probs=63.7
Q ss_pred CcceEEEecCCHHHHHHHHhccCCcEEEeCCcee---eeecccCCcEEEEEEeecCCCceeEEEEEEecCccccCCCCCc
Q 044324 89 DYTWKCVKRDTAQECLDSARKGEADIINLEAGLA---YTAFLNFSMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINL 165 (291)
Q Consensus 89 ~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~i---y~A~~~~~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l 165 (291)
+..++-+.-+|+.+-.+++..|+.|+-.+.-... |...+.++|++|..-.. .-.++.-+. +.++
T Consensus 34 Gi~veiv~F~Dy~~pN~AL~~G~IDaN~fQH~pyL~~~nk~~g~~lv~v~~~~~-------~p~giYS~k------~ksl 100 (245)
T 3up9_A 34 GIKLDIVEYTDYVQPNTALNDGDLDANFYQTVPYLENAEKQFGYNFEAGEGIHL-------EPLGVFSNK------HKSL 100 (245)
T ss_dssp TEEEEEEECSSSHHHHHHHHTTSCSEEEEEEHHHHHHHHHHHCCCEEECCCCEE-------CCCEEECSS------CSCG
T ss_pred CCeEEEEEecCcccHHHHHHcCCCceeccCCHHHHHHHHHHCCCCEEEEeeecc-------cceEEEeCC------CCCH
Confidence 6899999999999999999999999998865532 33335678887642111 123333343 7899
Q ss_pred ccCC-CCcccCCCCCCCCCchhHHHHHHhCCC
Q 044324 166 MDFK-GHKSCHGSYSTAAGWNYPVNHIKGSTP 196 (291)
Q Consensus 166 ~dLk-GKksCHtG~~~taGW~iPvg~L~~~~~ 196 (291)
+||+ |++..-|.- .+..-.-+..|.+.|+
T Consensus 101 ~dL~~Ga~IaIPnD--~tN~~RaL~lL~~aGL 130 (245)
T 3up9_A 101 DELPDGGTIGIISD--TANQSRALELLATQGL 130 (245)
T ss_dssp GGCCTTEEEEEECS--HHHHHHHHHHHHHTTS
T ss_pred HHcCcCCEEEEecC--cchHHHHHHHHHHCCC
Confidence 9999 999887644 2223333556666774
No 117
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=36.82 E-value=11 Score=30.85 Aligned_cols=31 Identities=10% Similarity=-0.121 Sum_probs=24.7
Q ss_pred eEEEec-CCHHHHHHHHhccCCcEEEeCCcee
Q 044324 92 WKCVKR-DTAQECLDSARKGEADIINLEAGLA 122 (291)
Q Consensus 92 l~CV~~-~s~~dCm~~I~~g~ADiv~ld~~~i 122 (291)
+.=+.. .+..++++++.+|++|++..+...+
T Consensus 142 ~~~~~~~~~~~~~~~~L~~g~vDa~~~~~~~~ 173 (246)
T 4eq9_A 142 TILNYTKADFQQIMVRLSDGQFDYKIFDKIGV 173 (246)
T ss_dssp CEEEECCCCHHHHHHHHHTTSSSEEEEEHHHH
T ss_pred eEEEecCCCHHHHHHHHHcCCceEEEecHHHH
Confidence 444433 4899999999999999999987654
No 118
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=36.70 E-value=89 Score=23.19 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=39.2
Q ss_pred ceEEEeccchHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCc
Q 044324 64 TIKWCAVRDQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAG 120 (291)
Q Consensus 64 ~vRwCv~S~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~ 120 (291)
..|+-++.....-...| ...+...+....+....+..+.++.+.....|++.+|-.
T Consensus 5 ~~~ILivdd~~~~~~~l-~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~ 60 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALI-RRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIG 60 (144)
T ss_dssp CEEEEEECCCHHHHHHH-HHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTT
T ss_pred CCEEEEEeCCHHHHHHH-HHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCC
Confidence 45666666333334444 444444445666888889999999999999999999865
No 119
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=36.38 E-value=1.1e+02 Score=22.34 Aligned_cols=58 Identities=7% Similarity=-0.048 Sum_probs=41.4
Q ss_pred CCceEEEeccchHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhc-----cCCcEEEeCCc
Q 044324 62 EATIKWCAVRDQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARK-----GEADIINLEAG 120 (291)
Q Consensus 62 ~~~vRwCv~S~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~-----g~ADiv~ld~~ 120 (291)
....|+-++.....-...+ ...+...+....+....+..+.++.+++ ...|++.+|-.
T Consensus 7 ~~~~~iLivdd~~~~~~~l-~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~ 69 (146)
T 3ilh_A 7 RKIDSVLLIDDDDIVNFLN-TTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDIN 69 (146)
T ss_dssp CCEEEEEEECSCHHHHHHH-HHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESS
T ss_pred CccceEEEEeCCHHHHHHH-HHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCC
Confidence 3567888888334445555 4444444443477788899999999999 89999999855
No 120
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=35.69 E-value=17 Score=30.05 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=26.8
Q ss_pred ceEEEecCCHHHHHHHHhccCCcEEEeCCcee
Q 044324 91 TWKCVKRDTAQECLDSARKGEADIINLEAGLA 122 (291)
Q Consensus 91 ~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~i 122 (291)
.+.=+...+..++++++.+|++|++..+...+
T Consensus 171 ~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~ 202 (269)
T 4i62_A 171 NSSLVSLPKNGNLITDLKSGQVDAVIFEEPVA 202 (269)
T ss_dssp TSEEEEESCHHHHHHHHHTTSSSEEEEEHHHH
T ss_pred CCcEEecCCHHHHHHHHHcCCCCEEEeChHHH
Confidence 45556777999999999999999999887654
No 121
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=35.33 E-value=2.1e+02 Score=24.33 Aligned_cols=99 Identities=10% Similarity=0.013 Sum_probs=54.7
Q ss_pred ceEEEecc-chHHHHHHHHHHhhcCCCc--ceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEeec
Q 044324 64 TIKWCAVR-DQYEDCEYLVSIISQSEDY--TWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYC 140 (291)
Q Consensus 64 ~vRwCv~S-~E~~KC~~l~~~a~~~~~p--~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y~ 140 (291)
++|+.+.. ....-=..+ -..|....| .|+... .+..+.++++.+|++|++...... ....+...++..|
T Consensus 91 ~l~Ig~~~~~~~~~l~~~-l~~f~~~~P~v~i~l~~-~~~~~~~~~l~~g~~Dlai~~~~~---~~~~l~~~~L~~~--- 162 (312)
T 2h9b_A 91 TIRIGFVGSLLFGLLPRI-IHLYRQAHPNLRIELYE-MGTKAQTEALKEGRIDAGFGRLKI---SDPAIKHSLLRNE--- 162 (312)
T ss_dssp EEEEEECGGGGGTTHHHH-HHHHHHTCTTCEEEEEE-CCHHHHHHHHHTTSCSEEEESSCC---CCTTEEEEEEEEE---
T ss_pred eEEEEechhhhHhhHHHH-HHHHHHHCCCcEEEEEe-CCHHHHHHHHHcCCCCEEEEeCCC---CCCCceEEEeecc---
Confidence 89998776 433222222 222333234 455443 367899999999999999875432 1111222344322
Q ss_pred CCCceeEEEEEEecCc-ccc-CCC-CCcccCCCCcccCC
Q 044324 141 DHAQSYDAVAVINRKV-CQE-NGG-INLMDFKGHKSCHG 176 (291)
Q Consensus 141 ~~~~~Y~aVAVVkK~~-~~~-S~~-~~l~dLkGKksCHt 176 (291)
..|.|+.++. -+. ... .+++||++.+.-..
T Consensus 163 ------~~~~v~~~~hpla~~~~~~i~~~dL~~~~~i~~ 195 (312)
T 2h9b_A 163 ------RLMVAVHASHPLNQMKDKGVHLNDLIDEKILLY 195 (312)
T ss_dssp ------EEEEEEETTSGGGGGTTTCBCGGGSTTSEEEEC
T ss_pred ------eEEEEEcCCCccccccCCCCCHHHHcCCCEEEe
Confidence 2356667651 111 112 68899998776653
No 122
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=35.06 E-value=6.9 Score=35.87 Aligned_cols=163 Identities=11% Similarity=0.044 Sum_probs=92.7
Q ss_pred CCCceEEEecc-c--hH-HHHHHHHHHhhcC-CCcceEEEecCCHHH--HHHHHhccCCc---EEEeCCcee-e----e-
Q 044324 61 SEATIKWCAVR-D--QY-EDCEYLVSIISQS-EDYTWKCVKRDTAQE--CLDSARKGEAD---IINLEAGLA-Y----T- 124 (291)
Q Consensus 61 ~~~~vRwCv~S-~--E~-~KC~~l~~~a~~~-~~p~l~CV~~~s~~d--Cm~~I~~g~AD---iv~ld~~~i-y----~- 124 (291)
|.+.||+-|.. . .. .--..| ...+.. .+..+.-........ -++.+.++.+| ++......+ . .
T Consensus 17 P~~pi~iivp~~~GG~~D~~aR~l-a~~l~~~lg~~vvV~N~pGa~g~ig~~~v~~a~~DGytl~~~~~~~~~~~~~~~~ 95 (314)
T 2dvz_A 17 PSKAIRVIVPFAPGGSTDIIARLV-TQRMSQELGQPMVVENKGGAGGAIGASEAARAEPDGYTLSIATVSTMAVNPACRP 95 (314)
T ss_dssp CSSCEEEEESSCTTSHHHHHHHHH-HHHHHHHHTSCEEEEECCCGGGHHHHHHHHHSCTTSSEEEEECHHHHTHHHHHST
T ss_pred CCCCEEEEEccCCccHHHHHHHHH-HHHHHHHhCCCEEEEECCCchHHHHHHHHHhCCCCCcEEEEecCcHHHHHHHHhC
Confidence 77889988865 2 11 122233 222221 133455554443333 35789999998 544443321 1 1
Q ss_pred ecccC----CcEEEEEEeecCCCceeEEEEEEecCccccCCCCCcccCCCC--------cccCCCCCCCCCchhHHHHHH
Q 044324 125 AFLNF----SMKAIANEVYCDHAQSYDAVAVINRKVCQENGGINLMDFKGH--------KSCHGSYSTAAGWNYPVNHIK 192 (291)
Q Consensus 125 A~~~~----~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dLkGK--------ksCHtG~~~taGW~iPvg~L~ 192 (291)
....| +++||.. ++ .+..|.||+++ +++.+++||+++ +.-.+|.+++ ..+-...|.
T Consensus 96 ~~~~yd~~~df~pv~~-~~-----~~~~~lvv~~d----s~~~tl~dL~~~ak~~p~~~~~g~~g~Gs~--~hl~~~~l~ 163 (314)
T 2dvz_A 96 KDLPYDPIKDFQPVTN-FA-----NTANVVAVNPK----FPAKDFKGFLEELKKNPGKYSYGSSGTCGV--LHLMGESFK 163 (314)
T ss_dssp TTCSCCTTTSEEEEEE-EE-----EECEEEEECTT----SSCSSHHHHHHHHHTSTTTCEEEESCTTSH--HHHHHHHHH
T ss_pred CCCCCCchhccceeeE-cc-----cCCEEEEEeCC----CCCCCHHHHHHHHHhCCCcEEEeCCCCCcH--HHHHHHHHH
Confidence 11123 5677752 22 34568889999 889999999762 3334444322 333333332
Q ss_pred -hCCCCCCCCCCchhhhhhccccccCCCCCCCCCCCCcCCCCCCCCCCCCCCccCccccccccccCCCcEEEEechhhhh
Q 044324 193 -GSTPTFDSGKISDIEIASSFFSEVCAPGEFEGTGMCSGCGIENGSCHSNSLYFGDSGAFRCLVEELGDIAFVRGDTALL 271 (291)
Q Consensus 193 -~~~~~c~~~~~~~~~~~s~FFs~SCvPG~~~~~~LC~lC~g~~~~C~~~e~Y~Gy~GAlrCL~eg~GDVAFVk~~tV~~ 271 (291)
..|+.- ..-+|.|..-|+.=|..|.=|++|.....+..
T Consensus 164 ~~~Gi~~-----------------------------------------~~Vpy~G~~~a~~al~~G~vD~~~~~~~~~~~ 202 (314)
T 2dvz_A 164 MATGTDI-----------------------------------------VHVPYKGSGPAVADAVGGQIELIFDNLPSSMP 202 (314)
T ss_dssp HHHTCCC-----------------------------------------EEEECSSHHHHHHHHHHTSSSEEEEEHHHHHH
T ss_pred HHhCCCe-----------------------------------------EEcccCCHHHHHHHHHcCCceEEEEcHHHHHH
Confidence 223211 01247777788888999999999999888888
Q ss_pred hhcCCC
Q 044324 272 YSKEGP 277 (291)
Q Consensus 272 ~~~dg~ 277 (291)
+.+.|+
T Consensus 203 ~i~~g~ 208 (314)
T 2dvz_A 203 QIQAGK 208 (314)
T ss_dssp HHHTTS
T ss_pred HHHcCC
Confidence 775664
No 123
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=34.13 E-value=60 Score=27.55 Aligned_cols=101 Identities=13% Similarity=0.038 Sum_probs=52.3
Q ss_pred CCCceEEEecc-chHHHHHHHHHHhhcCCCc--ceEEEecCCHHHHHHHHhccCCcEEEeC---CceeeeecccCCcEEE
Q 044324 61 SEATIKWCAVR-DQYEDCEYLVSIISQSEDY--TWKCVKRDTAQECLDSARKGEADIINLE---AGLAYTAFLNFSMKAI 134 (291)
Q Consensus 61 ~~~~vRwCv~S-~E~~KC~~l~~~a~~~~~p--~l~CV~~~s~~dCm~~I~~g~ADiv~ld---~~~iy~A~~~~~L~PI 134 (291)
...++|+.+.. ....-=..+ -..+....| .++.... +..+.++++.+|++|++... ... ....+...++
T Consensus 99 ~~~~l~Ig~~~~~~~~~l~~~-l~~f~~~~P~i~i~l~~~-~~~~~~~~l~~g~~Dl~i~~~~~~~~---~~~~l~~~~l 173 (310)
T 2esn_A 99 SQRTFVFAATDYTAFALLPPL-MNRLQHSAPGVRLRLVNA-ERKLSVEALASGRIDFALGYDEEHER---LPEGIQAHDW 173 (310)
T ss_dssp CCCEEEEECCHHHHHHHHHHH-HHHHHHHSTTCEEEEECC-SSSCCHHHHHHTSSSEEEECCSTTCC---CCTTEEEEEE
T ss_pred cCceEEEEeChHHHHHHHHHH-HHHHHHHCCCeEEEEEeC-CcccHHHHHHcCCCCEEEecCccccc---CCcCcceeee
Confidence 45689998876 433222222 122222224 4544443 45678999999999999876 322 1112223344
Q ss_pred EEEeecCCCceeEEEEEEecCccccCCCCCcccCCCCcccC
Q 044324 135 ANEVYCDHAQSYDAVAVINRKVCQENGGINLMDFKGHKSCH 175 (291)
Q Consensus 135 l~E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dLkGKksCH 175 (291)
..| ..+.|+.++.-......+++||++.+.-.
T Consensus 174 ~~~---------~~~~v~~~~~pl~~~~i~~~dL~~~~~i~ 205 (310)
T 2esn_A 174 FAD---------RYVVVARRDHPRLAGAPTLEGYLAERHAV 205 (310)
T ss_dssp EEE---------CEEEEEESSCTTCSSSCCHHHHHTSEEEE
T ss_pred ecc---------ceEEEEeCCCCCcCCCCCHHHHhcCCcEE
Confidence 422 22666777610000135677777765443
No 124
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=33.58 E-value=24 Score=31.76 Aligned_cols=103 Identities=14% Similarity=0.028 Sum_probs=55.3
Q ss_pred CceEEEecc-chHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEE---eCC-ceeeeec-ccCCcEEEEE
Q 044324 63 ATIKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIIN---LEA-GLAYTAF-LNFSMKAIAN 136 (291)
Q Consensus 63 ~~vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~---ld~-~~iy~A~-~~~~L~PIl~ 136 (291)
.+||+=... .|..-=..|.+..+...+..++=+...+....+++|.+|++|+.. +.. ..+|... ...+|+-+ .
T Consensus 8 ~~I~ig~~~~~e~~~~~~i~~~~Le~~Gy~Ve~~~~~~~~~~~~Al~~G~iDi~~e~w~~~~~~~~~~~~~~~~l~~l-~ 86 (309)
T 1r9l_A 8 ITVNPVQSTITEETFQTLLVSRALEKLGYTVNKPSEVDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYRE-G 86 (309)
T ss_dssp CEECEEECSCGGGHHHHHHHHHHHHHTTCEECCCEECCHHHHHHHHHHTSSCEEEEEEETTTHHHHHHTTGGGTEEEC-S
T ss_pred ceEEEeecCccHHHHHHHHHHHHHHHcCCCeEEeecCchHHHHHHHhcCCceEEeccccCccHHHHHHhhcCCcEEEe-c
Confidence 357766655 554322233233443345555544444889999999999999985 332 3444432 22344322 1
Q ss_pred EeecCCCceeEEEEEEecCccccCCCCCcccCCC
Q 044324 137 EVYCDHAQSYDAVAVINRKVCQENGGINLMDFKG 170 (291)
Q Consensus 137 E~y~~~~~~Y~aVAVVkK~~~~~S~~~~l~dLkG 170 (291)
..+ ...-++++| ++...+..++.+++||+|
T Consensus 87 ~~~---~~~~~~l~V-~~~~a~~~~i~si~DL~~ 116 (309)
T 1r9l_A 87 VFV---NGAAQGYLI-DKKTADQYKITNIAQLKD 116 (309)
T ss_dssp CSE---EEEEEEEEE-EHHHHHHHTCCBGGGGGS
T ss_pred ccC---CCceEEEEE-chhhhhhcCCCCHHHHcC
Confidence 111 113366666 554111015899999995
No 125
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=32.95 E-value=76 Score=24.65 Aligned_cols=99 Identities=7% Similarity=-0.042 Sum_probs=48.7
Q ss_pred CCCceEEEecc-chHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEee
Q 044324 61 SEATIKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVY 139 (291)
Q Consensus 61 ~~~~vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y 139 (291)
..+++|+-+.. ....-=..+ -..+....|.++-....+ +-+..+.+|++|++....... ...+...++..|
T Consensus 5 ~~g~l~Ig~~~~~~~~~l~~~-l~~f~~~~P~v~l~i~~~--~~~~~l~~g~~D~~i~~~~~~---~~~~~~~~l~~~-- 76 (213)
T 3hhf_B 5 PQGVLSVDSAMPMVLHLLAPL-AAKFNERYPHIRLSLVSS--EGYINLIERKVDIALRAGELD---DSGLRARHLFDS-- 76 (213)
T ss_dssp CCEEEEEEECHHHHHHTHHHH-HHHHHHHCTTEEEEEECC--STTHHHHTTSSSEEEECC--C---CSSEEEEEEEEE--
T ss_pred CCceEEEecCHHHHHHHHHHH-HHHHHHHCCCcEEEEEeC--CcHHHHHhCCccEEEEEecCC---CccceEEeeecc--
Confidence 45678887776 433322222 222322234444333322 235669999999998754211 122223344432
Q ss_pred cCCCceeEEEEEEecCccc-cCCCCCcccCCCCccc
Q 044324 140 CDHAQSYDAVAVINRKVCQ-ENGGINLMDFKGHKSC 174 (291)
Q Consensus 140 ~~~~~~Y~aVAVVkK~~~~-~S~~~~l~dLkGKksC 174 (291)
..++|+.++.-. .....+++||.+-+.-
T Consensus 77 -------~~~~v~~~~~~~~~~~~~~~~~L~~~~~i 105 (213)
T 3hhf_B 77 -------RFRVIASPEYLAKHGTPQSTEELAGHQCL 105 (213)
T ss_dssp -------CEEEEECHHHHHHHCCCSSGGGGGGSCBC
T ss_pred -------eEEEEeCHHHHHhcCCCCCHHHhcCCCeE
Confidence 236666665100 0124678888776544
No 126
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=31.16 E-value=29 Score=29.40 Aligned_cols=54 Identities=9% Similarity=0.168 Sum_probs=35.6
Q ss_pred eEEEecc-chHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCce
Q 044324 65 IKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGL 121 (291)
Q Consensus 65 vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~ 121 (291)
.|++++. .... ..+ .......++.+.-+...+..++++++.+|++|++..+...
T Consensus 131 ~~v~~~~g~~~~--~~l-~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~vDa~i~~~~~ 185 (287)
T 2vha_A 131 KAVVVTSGTTSE--VLL-NKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFMMDDAL 185 (287)
T ss_dssp CEEEEETTSHHH--HHH-HHHHHHTTCCCEEEEESSHHHHHHHHHTTSCSEEEEEHHH
T ss_pred CEEEEeCCCcHH--HHH-HHHhhccCCCceEEEcCCHHHHHHHHHcCCeeEEEeChHH
Confidence 4778776 3222 223 2222112345666777899999999999999999987654
No 127
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=29.44 E-value=1.5e+02 Score=22.83 Aligned_cols=59 Identities=17% Similarity=0.078 Sum_probs=39.7
Q ss_pred CCCceEEEeccchHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCc
Q 044324 61 SEATIKWCAVRDQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAG 120 (291)
Q Consensus 61 ~~~~vRwCv~S~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~ 120 (291)
..+.+|+-++.....-...| ...+...+....+....+..+.++.+.+...|++.+|-.
T Consensus 22 ~~~~~~ILivdd~~~~~~~l-~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvilD~~ 80 (164)
T 3t8y_A 22 TDRVIRVLVVDDSAFMRMVL-KDIIDSQPDMKVVGFAKDGLEAVEKAIELKPDVITMDIE 80 (164)
T ss_dssp --CCEEEEEECSCHHHHHHH-HHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEECSS
T ss_pred ccCccEEEEEcCCHHHHHHH-HHHHhcCCCeEEEEecCCHHHHHHHhccCCCCEEEEeCC
Confidence 34568888888444455566 444443222233336778999999999999999999854
No 128
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=29.35 E-value=1.2e+02 Score=23.04 Aligned_cols=55 Identities=15% Similarity=0.090 Sum_probs=39.5
Q ss_pred CceEEEeccchHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCc
Q 044324 63 ATIKWCAVRDQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAG 120 (291)
Q Consensus 63 ~~vRwCv~S~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~ 120 (291)
+..|+-++..+..-+..| ...+...+ +.+....+..+.++.+++...|++.+|-.
T Consensus 6 ~~~~ILivdd~~~~~~~l-~~~L~~~g--~~v~~~~~~~~al~~l~~~~~dlii~D~~ 60 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHL-KHILEETG--YQTEHVRNGREAVRFLSLTRPDLIISDVL 60 (154)
T ss_dssp -CCEEEEECSCHHHHHHH-HHHHHTTT--CEEEEESSHHHHHHHHTTCCCSEEEEESC
T ss_pred CCCcEEEEeCCHHHHHHH-HHHHHHCC--CEEEEeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 456777777445555666 54454433 55677789999999999999999999854
No 129
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=29.31 E-value=44 Score=26.71 Aligned_cols=52 Identities=10% Similarity=-0.014 Sum_probs=36.0
Q ss_pred ceEEEecc-chHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCcee
Q 044324 64 TIKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLA 122 (291)
Q Consensus 64 ~vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~i 122 (291)
..|++++. .... ..| .... +.+.-+...+..++++++.+|++|++..+...+
T Consensus 112 g~~v~~~~g~~~~--~~l-~~~~----~~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~ 164 (229)
T 2y7i_A 112 GKKVGLENGTTHQ--RYL-QDKQ----QAITPVAYDSYLNAFTDLKNNRLEGVFGDVAAI 164 (229)
T ss_dssp TCEEEEETTSHHH--HHH-HHHC----TTSEEEEESCHHHHHHHHHTTSCSEEEEEHHHH
T ss_pred CCEEEEecCCcHH--HHH-HHhC----CCCeEEecCCHHHHHHHHHcCCcCEEEechHHH
Confidence 45778776 3332 234 3221 345567778999999999999999999887643
No 130
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=28.90 E-value=96 Score=26.19 Aligned_cols=102 Identities=10% Similarity=-0.061 Sum_probs=57.0
Q ss_pred CCCceEEEecc-chHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEee
Q 044324 61 SEATIKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVY 139 (291)
Q Consensus 61 ~~~~vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y 139 (291)
..+++|+.+.. ....--..+ -..+ . ...++.... +..+.++.+.+|++|++......- ...+...++..|
T Consensus 93 ~~g~l~Ig~~~~~~~~~l~~~-l~~f-~-~v~i~~~~~-~~~~~~~~l~~g~~D~~i~~~~~~---~~~l~~~~l~~~-- 163 (303)
T 3isp_A 93 KRTRITIAVNADSMATWFSAV-FDGL-G-DVLLDVRIE-DQDHSARLLREGVAMGAVTTERNP---VPGCRVHPLGEM-- 163 (303)
T ss_dssp CCEEEEEEECHHHHHTTGGGG-GTTC-C-SEEEEEEEC-CHHHHHHHHHTTSCSEEEESCCSC---CTTEEEEEEEEE--
T ss_pred CCceEEEeechhHHHHHHHHH-HHhh-c-cceEEEEec-ChHHHHHHHHcCcceEEEecCCCC---CCCeEEEEccce--
Confidence 45689998875 322111111 1233 2 456665554 667899999999999987654311 111222344322
Q ss_pred cCCCceeEEEEEEecCcccc--CCCCCcccCCCCcccCCCC
Q 044324 140 CDHAQSYDAVAVINRKVCQE--NGGINLMDFKGHKSCHGSY 178 (291)
Q Consensus 140 ~~~~~~Y~aVAVVkK~~~~~--S~~~~l~dLkGKksCHtG~ 178 (291)
..|.|+.++.-.. ....+++||.+...-....
T Consensus 164 -------~~~~v~~~~~~~~~~~~~~~~~dL~~~~~i~~~~ 197 (303)
T 3isp_A 164 -------RYLPVASRPFVQRHLSDGFTAAAAAKAPSLAWNR 197 (303)
T ss_dssp -------EEEEEECHHHHHHHCTTCSCTTTTTTSCBCCSST
T ss_pred -------eEEEEecchHhhhccccCCCHhHhccCCceecCC
Confidence 3366676651110 1246889999887665443
No 131
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=28.40 E-value=1.1e+02 Score=22.55 Aligned_cols=57 Identities=23% Similarity=0.161 Sum_probs=37.9
Q ss_pred CceEEEeccchHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhc----------cCCcEEEeCCc
Q 044324 63 ATIKWCAVRDQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARK----------GEADIINLEAG 120 (291)
Q Consensus 63 ~~vRwCv~S~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~----------g~ADiv~ld~~ 120 (291)
...|+-++.....-...+ ...+...+....+....+..+.++.+++ ...|++.+|-.
T Consensus 5 ~~~~iLivdd~~~~~~~l-~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~ 71 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTF-QRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLN 71 (149)
T ss_dssp TTSCEEEECCCHHHHHHH-HHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSC
T ss_pred CCccEEEEECCHHHHHHH-HHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECC
Confidence 345666666334444455 4444433343467778889999999997 78999999854
No 132
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=27.87 E-value=2.9e+02 Score=23.65 Aligned_cols=99 Identities=8% Similarity=0.038 Sum_probs=53.8
Q ss_pred ceEEEecc-chHHHHHHHHHHhhcCCCc--ceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEeec
Q 044324 64 TIKWCAVR-DQYEDCEYLVSIISQSEDY--TWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVYC 140 (291)
Q Consensus 64 ~vRwCv~S-~E~~KC~~l~~~a~~~~~p--~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y~ 140 (291)
++|+.+.. ....--..+ -..+....| .++... .+..+.++++.+|++|++...... ....+...++..|
T Consensus 91 ~l~Ig~~~~~~~~~l~~~-l~~f~~~~P~v~l~l~~-~~~~~~~~~l~~g~~Dlai~~~~~---~~~~l~~~~L~~~--- 162 (313)
T 2h98_A 91 TLRIGYVSSLLYGLLPEI-IYLFRQQNPEIHIELIE-CGTKDQINALKQGKIDLGFGRLKI---TDPAIRRIMLHKE--- 162 (313)
T ss_dssp EEEEEECGGGGGTTHHHH-HHHHHHHCTTSEEEEEE-CCHHHHHHHHHHTSCSEEEESSCC---CCTTEEEEEEEEE---
T ss_pred EEEEEechHhHHhHHHHH-HHHHHHHCCCeEEEEEe-CChHHHHHHHHcCCCCEEEEeCCC---CCCCeeEEEeeeC---
Confidence 89997776 433222222 122222224 455544 356899999999999999875432 1111222344422
Q ss_pred CCCceeEEEEEEecCc-ccc-CCC-CCcccCCCCcccCC
Q 044324 141 DHAQSYDAVAVINRKV-CQE-NGG-INLMDFKGHKSCHG 176 (291)
Q Consensus 141 ~~~~~Y~aVAVVkK~~-~~~-S~~-~~l~dLkGKksCHt 176 (291)
..+.|+.++. -+. ... .+++||.+...-..
T Consensus 163 ------~~~~v~~~~hpl~~~~~~~i~~~dL~~~~~i~~ 195 (313)
T 2h98_A 163 ------QLKLAIHKHHHLNQFAATGVHLSQIIDEPMLLY 195 (313)
T ss_dssp ------EEEEEEETTSGGGGGTTSCBCGGGGTTSCEEEC
T ss_pred ------cEEEEEcCCCcccccCCCCcCHHHHcCCCEEEe
Confidence 2256666651 111 112 68899998776553
No 133
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=27.83 E-value=44 Score=27.29 Aligned_cols=51 Identities=16% Similarity=0.079 Sum_probs=36.2
Q ss_pred ceEEEecc-chHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCce
Q 044324 64 TIKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGL 121 (291)
Q Consensus 64 ~vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~ 121 (291)
..|++++. .-.. ..+ ... .+.+.=+...+..++++++.+|++|++..+...
T Consensus 115 g~~i~v~~g~~~~--~~l-~~~----~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~ 166 (245)
T 3k4u_A 115 ELTLVTKFGVSAE--YAA-KRL----FKNAKLKTYDTEAEAVQEVLNGKADMFIFDLPF 166 (245)
T ss_dssp SCEEEEETTSHHH--HHH-HHH----CSSSEEEEESSHHHHHHHHHSSSSEEEEEEHHH
T ss_pred CcEEEEeCCcHHH--HHH-Hhh----CCcCCEEEeCCHHHHHHHHHcCCCcEEEEcHHH
Confidence 56888887 4332 233 222 234666777899999999999999999988653
No 134
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=27.65 E-value=40 Score=26.72 Aligned_cols=53 Identities=11% Similarity=0.072 Sum_probs=37.1
Q ss_pred CceEEEecc-chHHHHHHHHHHhhcCCCcc-eEEEecCCHHHHHHHHhccCCcEEEeCCcee
Q 044324 63 ATIKWCAVR-DQYEDCEYLVSIISQSEDYT-WKCVKRDTAQECLDSARKGEADIINLEAGLA 122 (291)
Q Consensus 63 ~~vRwCv~S-~E~~KC~~l~~~a~~~~~p~-l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~i 122 (291)
...|++++. .... ..+ .... +. +.=+...+..++++++.+|++|++..+...+
T Consensus 108 ~g~~v~~~~g~~~~--~~l-~~~~----~~~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~ 162 (227)
T 3tql_A 108 KGKIIGVQGGTTFD--SYL-QDSF----GNSITIQRYPSEEDALMDLTSGRVDAVVGDTPLI 162 (227)
T ss_dssp TTCEEEEETTSHHH--HHH-HHHH----GGGSEEEEESSHHHHHHHHTTTSSSEEESCHHHH
T ss_pred CCCEEEEEecccHH--HHH-HHhc----cccceEEEcCCHHHHHHHHHcCCcCEEEeChHHH
Confidence 345888887 4332 233 2222 23 6667778999999999999999999987654
No 135
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=27.39 E-value=1.9e+02 Score=21.53 Aligned_cols=57 Identities=9% Similarity=0.096 Sum_probs=40.5
Q ss_pred CceEEEeccchHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhc-------cCCcEEEeCCc
Q 044324 63 ATIKWCAVRDQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARK-------GEADIINLEAG 120 (291)
Q Consensus 63 ~~vRwCv~S~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~-------g~ADiv~ld~~ 120 (291)
+.+|+-++..+..-...+ ...+...+....+....+..+.++.++. ...|++.+|-.
T Consensus 7 ~~~~ILivdd~~~~~~~l-~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~ 70 (149)
T 1i3c_A 7 PPKVILLVEDSKADSRLV-QEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLN 70 (149)
T ss_dssp CCEEEEEECCCHHHHHHH-HHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSC
T ss_pred CCCeEEEEECCHHHHHHH-HHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCC
Confidence 456777777555555666 5555544444577788899999999986 47899999854
No 136
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=26.92 E-value=51 Score=26.74 Aligned_cols=52 Identities=12% Similarity=0.036 Sum_probs=36.2
Q ss_pred ceEEEecc-chHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCcee
Q 044324 64 TIKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLA 122 (291)
Q Consensus 64 ~vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~i 122 (291)
..|++++. .-.. ..+ ... .+.+.-+...+..++++++.+|++|++..+...+
T Consensus 110 g~~i~~~~g~~~~--~~~-~~~----~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~ 162 (237)
T 3kzg_A 110 GKKIGVRKGTPYA--RQV-LSE----NRNNQVIFYELIQDMLLGLSNNQVDASLMDYEAA 162 (237)
T ss_dssp TCEEEEETTSTHH--HHH-HHT----CSSCEEEEESSHHHHHHHHHTTSSSEEEEEHHHH
T ss_pred CCEEEEecCCHHH--HHH-HHh----CCCCcEEEeCCHHHHHHHHHcCCCCEEEeCcHHH
Confidence 35777777 3321 233 222 2346667788999999999999999999887643
No 137
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=26.69 E-value=73 Score=25.29 Aligned_cols=68 Identities=9% Similarity=-0.123 Sum_probs=38.9
Q ss_pred cceEEEecCCHHHHHHHHhccC-CcEEEeCCce-eeeec-ccC----CcEEEEEEeecCCCceeEEEEEEecCccccCCC
Q 044324 90 YTWKCVKRDTAQECLDSARKGE-ADIINLEAGL-AYTAF-LNF----SMKAIANEVYCDHAQSYDAVAVINRKVCQENGG 162 (291)
Q Consensus 90 p~l~CV~~~s~~dCm~~I~~g~-ADiv~ld~~~-iy~A~-~~~----~L~PIl~E~y~~~~~~Y~aVAVVkK~~~~~S~~ 162 (291)
..++-.. .+..+-+++|.+|+ +|++...... +-... ... ...|+.. ...|.|++++ .+.
T Consensus 27 i~v~~~~-~~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~vlv~~~~----~~~ 92 (231)
T 1atg_A 27 HAVVISS-GSSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAI---------GKLVLWSAKP----GLV 92 (231)
T ss_dssp CCEEEEE-ECHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEE---------CCEEEEESST----TTS
T ss_pred CeEEEEE-CCcHHHHHHHHcCCCCCEEEeCChhHHHHHHhcCCCcCCceeEeee---------eeEEEEEcCC----CCC
Confidence 4555544 45688999999998 9998874432 21110 111 2233331 1236677777 432
Q ss_pred -CCcccCCCC
Q 044324 163 -INLMDFKGH 171 (291)
Q Consensus 163 -~~l~dLkGK 171 (291)
.+|+||.+.
T Consensus 93 ~~~~~dL~~~ 102 (231)
T 1atg_A 93 DNQGKVLAGN 102 (231)
T ss_dssp CTTSGGGGSS
T ss_pred CcchhhhccC
Confidence 368898764
No 138
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=26.55 E-value=2e+02 Score=21.49 Aligned_cols=56 Identities=14% Similarity=0.014 Sum_probs=40.3
Q ss_pred CCceEEEeccchHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCc
Q 044324 62 EATIKWCAVRDQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAG 120 (291)
Q Consensus 62 ~~~vRwCv~S~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~ 120 (291)
....|+=++.....-...| ...+... .+.+....+..+.++.+++...|++.+|-.
T Consensus 12 ~~~~~ILivdd~~~~~~~l-~~~L~~~--g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~ 67 (153)
T 3hv2_A 12 TRRPEILLVDSQEVILQRL-QQLLSPL--PYTLHFARDATQALQLLASREVDLVISAAH 67 (153)
T ss_dssp CSCCEEEEECSCHHHHHHH-HHHHTTS--SCEEEEESSHHHHHHHHHHSCCSEEEEESC
T ss_pred cCCceEEEECCCHHHHHHH-HHHhccc--CcEEEEECCHHHHHHHHHcCCCCEEEEeCC
Confidence 3456777777444445556 5555443 366778889999999999999999999854
No 139
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=26.11 E-value=1.7e+02 Score=20.97 Aligned_cols=55 Identities=13% Similarity=-0.026 Sum_probs=37.3
Q ss_pred CceEEEeccchHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCc
Q 044324 63 ATIKWCAVRDQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAG 120 (291)
Q Consensus 63 ~~vRwCv~S~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~ 120 (291)
...|+-++..+..-...+ ...+...+ +.++...+..+.++.+++...|++.+|-.
T Consensus 6 ~~~~ilivdd~~~~~~~l-~~~L~~~g--~~v~~~~~~~~a~~~l~~~~~dlvi~d~~ 60 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLL-DSWFSSLG--ATTVLAADGVDALELLGGFTPDLMICDIA 60 (130)
T ss_dssp TTCEEEEECSCHHHHHHH-HHHHHHTT--CEEEEESCHHHHHHHHTTCCCSEEEECCC
T ss_pred CCCeEEEEeCCHHHHHHH-HHHHHhCC--ceEEEeCCHHHHHHHHhcCCCCEEEEecC
Confidence 455666777333444455 33333322 45566789999999999999999999854
No 140
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=25.96 E-value=22 Score=25.73 Aligned_cols=24 Identities=13% Similarity=0.314 Sum_probs=19.2
Q ss_pred CCCCccCccccccccccCCCcEEE
Q 044324 240 SNSLYFGDSGAFRCLVEELGDIAF 263 (291)
Q Consensus 240 ~~e~Y~Gy~GAlrCL~eg~GDVAF 263 (291)
.++.||||.|-.+=+.+|+.-|-|
T Consensus 13 p~~~Yy~y~G~VQRvsdgkaaVLF 36 (66)
T 2jz2_A 13 VDDTYYRFEGLVQRVSDGKAAVLF 36 (66)
T ss_dssp TTSTTBTCEEEEEEEETTEEEEEE
T ss_pred CCCcccceeEEEEEecCCcEEEEe
Confidence 578999999999988887655544
No 141
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=25.92 E-value=45 Score=26.65 Aligned_cols=51 Identities=22% Similarity=0.178 Sum_probs=34.5
Q ss_pred eEEEecc-chHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCcee
Q 044324 65 IKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLA 122 (291)
Q Consensus 65 vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~i 122 (291)
.|++++. .... ..| . ...+.+.=+...+..++++++.+|++|++..+...+
T Consensus 118 ~~i~~~~g~~~~--~~l-~----~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~ 169 (234)
T 3h7m_A 118 RKVALHRDGIMH--EYL-A----ERGYGKDLVLTPTPADALRLLAAGGCDYAVVAMVPG 169 (234)
T ss_dssp SCEEEETTSHHH--HHH-H----TTTCGGGEEEESSHHHHHHHHHTTSSSEEEEEHHHH
T ss_pred CEEEEEeCchHH--HHH-H----hcCCCceEEEeCCHHHHHHHHHcCCceEEEeccHHH
Confidence 4677776 3221 223 2 223445556677999999999999999999876643
No 142
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=25.68 E-value=41 Score=27.21 Aligned_cols=52 Identities=12% Similarity=0.028 Sum_probs=36.2
Q ss_pred ceEEEecc-chHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCcee
Q 044324 64 TIKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLA 122 (291)
Q Consensus 64 ~vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~i 122 (291)
..|++++. ..... .+ ... .+.+.=+...+..++++++.+|++|++..+...+
T Consensus 125 g~~v~~~~g~~~~~--~l-~~~----~~~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~ 177 (239)
T 3kbr_A 125 GVTAIVNPGGTNEK--FA-RAN----LKKARILVHPDNVTIFQQIVDGKADLMMTDAIEA 177 (239)
T ss_dssp TCEEEECTTSHHHH--HH-HHH----CSSSEEEECCCTTTHHHHHHTTSCSEEEEEHHHH
T ss_pred CcEEEEcCCCcHHH--HH-HHh----CCCCceEEeCCHHHHHHHHHcCCcCEEEEchHHH
Confidence 56888877 43321 23 222 1345666777999999999999999999877654
No 143
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=25.64 E-value=1.5e+02 Score=21.25 Aligned_cols=53 Identities=9% Similarity=0.048 Sum_probs=36.1
Q ss_pred eEEEeccchHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCc
Q 044324 65 IKWCAVRDQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAG 120 (291)
Q Consensus 65 vRwCv~S~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~ 120 (291)
.|+-++.....-...+ ...+... .+.+....+..+.++.+++...|++.+|-.
T Consensus 4 ~~ilivdd~~~~~~~l-~~~L~~~--g~~v~~~~~~~~a~~~l~~~~~dlii~D~~ 56 (127)
T 3i42_A 4 QQALIVEDYQAAAETF-KELLEML--GFQADYVMSGTDALHAMSTRGYDAVFIDLN 56 (127)
T ss_dssp EEEEEECSCHHHHHHH-HHHHHHT--TEEEEEESSHHHHHHHHHHSCCSEEEEESB
T ss_pred ceEEEEcCCHHHHHHH-HHHHHHc--CCCEEEECCHHHHHHHHHhcCCCEEEEeCC
Confidence 4555555333344444 3333332 357777889999999999999999999854
No 144
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=24.92 E-value=43 Score=27.88 Aligned_cols=33 Identities=21% Similarity=0.153 Sum_probs=28.3
Q ss_pred cceEEEecCCHHHHHHHHhccCCcEEEeCCcee
Q 044324 90 YTWKCVKRDTAQECLDSARKGEADIINLEAGLA 122 (291)
Q Consensus 90 p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~i 122 (291)
+.+.=+...+..++++++.+|++|++..+...+
T Consensus 154 ~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~ 186 (268)
T 3hv1_A 154 ANQKVVQYSTFTQALIDLNSGRIDGLLIDRVYA 186 (268)
T ss_dssp GGGCEEEESSHHHHHHHHHHTSCSEEEEEHHHH
T ss_pred ccceEEEeCCHHHHHHHHHcCCCCEEEeCHHHH
Confidence 556777888999999999999999999987744
No 145
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=24.92 E-value=58 Score=26.23 Aligned_cols=31 Identities=10% Similarity=-0.033 Sum_probs=26.5
Q ss_pred ceEEEecCCHHHHHHHHhccCCcEEEeCCce
Q 044324 91 TWKCVKRDTAQECLDSARKGEADIINLEAGL 121 (291)
Q Consensus 91 ~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~ 121 (291)
.+.-+...+..++++++.+|++|++..+...
T Consensus 134 ~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~ 164 (239)
T 1lst_A 134 GVDVVAYANQDLIYSDLTAGRLDAALQDEVA 164 (239)
T ss_dssp TCEEEEESSHHHHHHHHHTTSCSEEEEEHHH
T ss_pred CCeEEEcCCHHHHHHHHHcCCCCEEEeCcHH
Confidence 4566777899999999999999999988664
No 146
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=24.25 E-value=21 Score=31.63 Aligned_cols=108 Identities=13% Similarity=0.052 Sum_probs=58.7
Q ss_pred hhc---ccCCccccCCCcccccCCCCCc-eEEEecc-chHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcE
Q 044324 40 GRE---EFGDHVVPSGEVGDDEEGSEAT-IKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADI 114 (291)
Q Consensus 40 ~~~---~~~~~~~~~~~~~~~~~~~~~~-vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADi 114 (291)
.|+ +||.++-.+..+-......... .|+=+-+ --.++ .|....+ .+..++= ...++.+++..+.+|++|+
T Consensus 84 ~r~~~vdFg~~yYv~~h~li~~~~~~~~ikrVGvd~gS~dq~--~lt~~~~--~g~~Ve~-ve~~y~~~i~~L~~G~IDA 158 (231)
T 2ozz_A 84 NLCIALELGPHTYVGEHQLICRKGESGNVKRVGLDSRSADQK--IMTDVFF--GDSDVER-VDLSYHESLQRIVKGDVDA 158 (231)
T ss_dssp CEEEEEECCTTSSSCCEEEEEETTCGGGCCEEEECTTCHHHH--HHHHHHH--TTSCCEE-EECCHHHHHHHHHHTSCCE
T ss_pred CeEEEEEcCCCccccCeEEEEeCCCccccEEEEecCCChhHH--HHHhhhc--CCCeEEE-EECCHHHHHHHHHcCCccE
Confidence 466 7898887666665544443223 4666655 22222 2212233 2334552 2368999999999999999
Q ss_pred EEeCCceeeeecccCCcEEEEEEe--ecCCCceeEEEEEEecC
Q 044324 115 INLEAGLAYTAFLNFSMKAIANEV--YCDHAQSYDAVAVINRK 155 (291)
Q Consensus 115 v~ld~~~iy~A~~~~~L~PIl~E~--y~~~~~~Y~aVAVVkK~ 155 (291)
++..-++.... ...+|.-+-... +. .....+|.+|||+
T Consensus 159 ~Iwn~d~~~a~-~~~~l~~~~l~~~~~~--~~~~eavI~v~k~ 198 (231)
T 2ozz_A 159 VIWNVVAENEL-TMLGLEATPLTDDPRF--LQATEAVVLTRVD 198 (231)
T ss_dssp EEEEC-CHHHH-HHTTEEEEECCSCHHH--HHTTCEEEEEETT
T ss_pred EEEcCcchhhh-cCCCcceecccccccc--ccCCceEEEEECC
Confidence 99955444333 224444221111 11 1123566777888
No 147
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=24.14 E-value=2e+02 Score=20.58 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=37.1
Q ss_pred EEEeccchHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhc-------cCCcEEEeCCc
Q 044324 66 KWCAVRDQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARK-------GEADIINLEAG 120 (291)
Q Consensus 66 RwCv~S~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~-------g~ADiv~ld~~ 120 (291)
|+-++.....-...| ...+...+..+.+....+..+.++.+.+ ...|++.+|-.
T Consensus 4 ~ilivdd~~~~~~~l-~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~ 64 (140)
T 1k68_A 4 KIFLVEDNKADIRLI-QEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLN 64 (140)
T ss_dssp EEEEECCCHHHHHHH-HHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSS
T ss_pred eEEEEeCCHHHHHHH-HHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecC
Confidence 444555333444555 4445444444577888899999999998 78999999855
No 148
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=24.05 E-value=61 Score=25.82 Aligned_cols=50 Identities=6% Similarity=0.096 Sum_probs=34.9
Q ss_pred ceEEEecc-chHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCcee
Q 044324 64 TIKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLA 122 (291)
Q Consensus 64 ~vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~i 122 (291)
..|++++. .... ..| ... .+.-+...+..++++++.+|++|++..+...+
T Consensus 116 g~~v~~~~g~~~~--~~l-~~~------~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~ 166 (233)
T 1ii5_A 116 NKEVAVVRDTTAV--DWA-NFY------QADVRETNNLTAAITLLQKKQVEAVMFDRPAL 166 (233)
T ss_dssp TCEEEEETTSHHH--HHH-HHT------TCEEEEESSHHHHHHHHHTTSCSEEEEEHHHH
T ss_pred CCeEEEECCccHH--HHH-HHc------CCCeEEcCCHHHHHHHHHcCCccEEEeCHHHH
Confidence 45788777 4332 234 221 24556778899999999999999999887643
No 149
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=23.91 E-value=30 Score=28.72 Aligned_cols=28 Identities=11% Similarity=0.090 Sum_probs=22.8
Q ss_pred EecCCHHHHHHHHhccCCcEEEeCCcee
Q 044324 95 VKRDTAQECLDSARKGEADIINLEAGLA 122 (291)
Q Consensus 95 V~~~s~~dCm~~I~~g~ADiv~ld~~~i 122 (291)
+...+..++++++..|++|++..+..-+
T Consensus 148 ~~~~~~~~~~~~L~~GrvDa~i~~~~~~ 175 (243)
T 4gvo_A 148 YEGQGSNDTANQLKTGRADATISTPFAV 175 (243)
T ss_dssp ECCSGGGSHHHHHHHTSCSBEEECHHHH
T ss_pred cccCChHHHHHHHHcCCccEEEccHHHH
Confidence 3456889999999999999998876543
No 150
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=23.67 E-value=1.5e+02 Score=21.66 Aligned_cols=56 Identities=18% Similarity=0.231 Sum_probs=38.0
Q ss_pred CCceEEEeccchHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCc
Q 044324 62 EATIKWCAVRDQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAG 120 (291)
Q Consensus 62 ~~~vRwCv~S~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~ 120 (291)
...+|+-++.....-...+ ...+... .+++....+..+.++.+++...|++.+|-.
T Consensus 5 ~~~~~iLivdd~~~~~~~l-~~~L~~~--g~~v~~~~~~~~a~~~l~~~~~dlii~d~~ 60 (142)
T 3cg4_A 5 EHKGDVMIVDDDAHVRIAV-KTILSDA--GFHIISADSGGQCIDLLKKGFSGVVLLDIM 60 (142)
T ss_dssp -CCCEEEEECSCHHHHHHH-HHHHHHT--TCEEEEESSHHHHHHHHHTCCCEEEEEESC
T ss_pred CCCCeEEEEcCCHHHHHHH-HHHHHHC--CeEEEEeCCHHHHHHHHHhcCCCEEEEeCC
Confidence 3456677777333344445 3333332 356778889999999999999999999854
No 151
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=23.49 E-value=1.8e+02 Score=21.02 Aligned_cols=53 Identities=9% Similarity=0.075 Sum_probs=37.1
Q ss_pred eEEEeccchHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCc
Q 044324 65 IKWCAVRDQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAG 120 (291)
Q Consensus 65 vRwCv~S~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~ 120 (291)
+|+-++.....-...| ...+... .+.+....+..+.++.+++...|++.+|-.
T Consensus 4 ~~ilivdd~~~~~~~l-~~~L~~~--g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~ 56 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAV-QLLLKNH--FSKVITLSSPVSLSTVLREENPEVVLLDMN 56 (140)
T ss_dssp CEEEEECSCHHHHHHH-HHHHTTT--SSEEEEECCHHHHHHHHHHSCEEEEEEETT
T ss_pred ceEEEEeCCHHHHHHH-HHHHHhC--CcEEEEeCCHHHHHHHHHcCCCCEEEEeCC
Confidence 4556666444445556 4444433 356667888999999999999999999743
No 152
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=23.42 E-value=2.1e+02 Score=21.32 Aligned_cols=55 Identities=7% Similarity=0.053 Sum_probs=39.1
Q ss_pred CceEEEeccchHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCc
Q 044324 63 ATIKWCAVRDQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAG 120 (291)
Q Consensus 63 ~~vRwCv~S~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~ 120 (291)
+.+|+-++.....-...+ ...+... .+.++...+..+.++.+.+...|++.+|-.
T Consensus 6 ~~~~iLivdd~~~~~~~l-~~~L~~~--g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~ 60 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSL-KRLIKRL--GCNIITFTSPLDALEALKGTSVQLVISDMR 60 (154)
T ss_dssp SCCEEEEECSCHHHHHHH-HHHHHTT--TCEEEEESCHHHHHHHHTTSCCSEEEEESS
T ss_pred CCCeEEEEcCCHHHHHHH-HHHHHHc--CCeEEEeCCHHHHHHHHhcCCCCEEEEecC
Confidence 356777777444445555 4444433 356677889999999999999999999854
No 153
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=23.04 E-value=1.7e+02 Score=21.82 Aligned_cols=56 Identities=13% Similarity=0.168 Sum_probs=37.5
Q ss_pred CCceEEEeccchHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCc
Q 044324 62 EATIKWCAVRDQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAG 120 (291)
Q Consensus 62 ~~~vRwCv~S~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~ 120 (291)
.+.+|+-++..+..-+..| ...+...+ +.++...+..+.++.++....|++.+|-.
T Consensus 12 ~~~~~iLivdd~~~~~~~l-~~~L~~~g--~~v~~~~~~~~al~~~~~~~~dlvl~D~~ 67 (143)
T 3m6m_D 12 VRSMRMLVADDHEANRMVL-QRLLEKAG--HKVLCVNGAEQVLDAMAEEDYDAVIVDLH 67 (143)
T ss_dssp ---CEEEEECSSHHHHHHH-HHHHHC----CEEEEESSHHHHHHHHHHSCCSEEEEESC
T ss_pred cccceEEEEeCCHHHHHHH-HHHHHHcC--CeEEEeCCHHHHHHHHhcCCCCEEEEeCC
Confidence 3467888888444456666 54444433 45556778899999999999999999844
No 154
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=21.95 E-value=72 Score=25.14 Aligned_cols=51 Identities=8% Similarity=-0.108 Sum_probs=35.1
Q ss_pred ceEEEecc-chHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCce
Q 044324 64 TIKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGL 121 (291)
Q Consensus 64 ~vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~ 121 (291)
..|+++.. .-.. ..+ ...+ +.+.-+...+..++++++.+|++|++..+...
T Consensus 109 g~~i~~~~g~~~~--~~l-~~~~----~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~ 160 (226)
T 1wdn_A 109 GKVVAVKSGTGSV--DYA-KANI----KTKDLRQFPNIDNAYMELGTNRADAVLHDTPN 160 (226)
T ss_dssp TCEEEEETTSHHH--HHH-HHHC----CCSEEEEESSHHHHHHHHHTTSCSEEEEEHHH
T ss_pred CCEEEEEcCCcHH--HHH-HHhC----CCceEEEeCCHHHHHHHHHcCCcCEEEeCcHH
Confidence 45788877 3332 234 3222 23455667799999999999999999987654
No 155
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=21.49 E-value=1.4e+02 Score=24.78 Aligned_cols=56 Identities=20% Similarity=0.261 Sum_probs=39.5
Q ss_pred CCceEEEeccchHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCc
Q 044324 62 EATIKWCAVRDQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAG 120 (291)
Q Consensus 62 ~~~vRwCv~S~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~ 120 (291)
...+|+-++..+..-...| ...+... .+.++...+..+.++.+.....|++.+|-.
T Consensus 21 ~~~~~ILivdd~~~~~~~l-~~~L~~~--g~~v~~~~~~~~al~~~~~~~~dlvllD~~ 76 (250)
T 3r0j_A 21 TPEARVLVVDDEANIVELL-SVSLKFQ--GFEVYTATNGAQALDRARETRPDAVILDVX 76 (250)
T ss_dssp CSSCEEEEECSCHHHHHHH-HHHHHHT--TCEEEEESSHHHHHHHHHHHCCSEEEEESC
T ss_pred CCCceEEEEECCHHHHHHH-HHHHHHC--CCEEEEECCHHHHHHHHHhCCCCEEEEeCC
Confidence 3457888888444445555 4434332 356667889999999999999999999854
No 156
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=21.28 E-value=2.2e+02 Score=20.73 Aligned_cols=53 Identities=11% Similarity=0.129 Sum_probs=37.1
Q ss_pred ceEEEeccchHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCC
Q 044324 64 TIKWCAVRDQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEA 119 (291)
Q Consensus 64 ~vRwCv~S~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~ 119 (291)
..|+-++.....-...| ...+... .++++...+..+.++.+++...|++.+|-
T Consensus 4 ~~~iLivdd~~~~~~~l-~~~L~~~--g~~v~~~~~~~~a~~~l~~~~~dlvi~d~ 56 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAV-KNALEKD--GFNVIWAKNEQEAFTFLRREKIDLVFVDV 56 (142)
T ss_dssp CCEEEEECSCHHHHHHH-HHHHGGG--TCEEEEESSHHHHHHHHTTSCCSEEEEEC
T ss_pred CCeEEEEeCCHHHHHHH-HHHHHhC--CCEEEEECCHHHHHHHHhccCCCEEEEeC
Confidence 34566666444445555 4444432 45677888999999999999999999985
No 157
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=21.20 E-value=62 Score=26.53 Aligned_cols=33 Identities=15% Similarity=0.090 Sum_probs=26.2
Q ss_pred cceEEEecCCHHHHHHHHhccCCcEEEeCCcee
Q 044324 90 YTWKCVKRDTAQECLDSARKGEADIINLEAGLA 122 (291)
Q Consensus 90 p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~i 122 (291)
+.+.=+...+..++++++.+|++|++..+...+
T Consensus 145 ~~~~~~~~~~~~~~~~~l~~grvDa~i~~~~~~ 177 (257)
T 2q88_A 145 PRDRVIVVPDGQSGLKMLQDGRIDVYSLPVLSI 177 (257)
T ss_dssp CGGGEEECSSHHHHHHHHHHTSCSEEEEEHHHH
T ss_pred CCceEEEcCCHHHHHHHHHcCCCcEEEcCHHHH
Confidence 333445677999999999999999999876643
No 158
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=21.16 E-value=2.1e+02 Score=20.83 Aligned_cols=54 Identities=7% Similarity=0.136 Sum_probs=37.0
Q ss_pred ceEEEeccchHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCc
Q 044324 64 TIKWCAVRDQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAG 120 (291)
Q Consensus 64 ~vRwCv~S~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~ 120 (291)
..|+-++.....-...+ ...+... .+.+....+..+.++.+++...|++.+|-.
T Consensus 6 ~~~iLivdd~~~~~~~l-~~~l~~~--g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~ 59 (140)
T 3grc_A 6 RPRILICEDDPDIARLL-NLMLEKG--GFDSDMVHSAAQALEQVARRPYAAMTVDLN 59 (140)
T ss_dssp CSEEEEECSCHHHHHHH-HHHHHHT--TCEEEEECSHHHHHHHHHHSCCSEEEECSC
T ss_pred CCCEEEEcCCHHHHHHH-HHHHHHC--CCeEEEECCHHHHHHHHHhCCCCEEEEeCC
Confidence 45666666333344455 3333332 345677789999999999999999999865
No 159
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=20.93 E-value=90 Score=26.21 Aligned_cols=99 Identities=7% Similarity=-0.052 Sum_probs=51.5
Q ss_pred CCCceEEEecc-chHHHHHHHHHHhhcCCCcceEEEecCCHHHHHHHHhccCCcEEEeCCceeeeecccCCcEEEEEEee
Q 044324 61 SEATIKWCAVR-DQYEDCEYLVSIISQSEDYTWKCVKRDTAQECLDSARKGEADIINLEAGLAYTAFLNFSMKAIANEVY 139 (291)
Q Consensus 61 ~~~~vRwCv~S-~E~~KC~~l~~~a~~~~~p~l~CV~~~s~~dCm~~I~~g~ADiv~ld~~~iy~A~~~~~L~PIl~E~y 139 (291)
..+++|+.+.. ....--..+ -..+....|.+...... .+.+..+.+|++|++......- ...+...++..|.
T Consensus 91 ~~g~l~I~~~~~~~~~~l~~~-l~~f~~~~P~v~i~l~~--~~~~~~l~~~~~Dl~i~~~~~~---~~~l~~~~L~~~~- 163 (306)
T 3hhg_A 91 PQGVLSVDSAMPMVLHLLAPL-AAKFNERYPHIRLSLVS--SEGYINLIERKVDIALRAGELD---DSGLRARHLFDSR- 163 (306)
T ss_dssp CCEEEEEEBCHHHHHHTHHHH-HHHHHHHCTTEEEEEEC--CSSSHHHHTTSSSCEEESCCCC---CSSCEEEEEEEEE-
T ss_pred CCCcEEEEccHHHHHHHHHHH-HHHHHHHCCCeEEEEEe--ccchhhHhhcCccEEEEeCCCC---CCCeEEEEeeeeE-
Confidence 45689997776 433332233 22232223444333332 3456789999999998754321 1223334554332
Q ss_pred cCCCceeEEEEEEecCccc-cCCCCCcccCCCCccc
Q 044324 140 CDHAQSYDAVAVINRKVCQ-ENGGINLMDFKGHKSC 174 (291)
Q Consensus 140 ~~~~~~Y~aVAVVkK~~~~-~S~~~~l~dLkGKksC 174 (291)
.+.|+.++.-. .....+++||++-..-
T Consensus 164 --------~~~v~~~~~~~~~~~~~~~~dL~~~~~i 191 (306)
T 3hhg_A 164 --------FRVIASPEYLAKHGTPQSTEELAGHQCL 191 (306)
T ss_dssp --------EEEEECHHHHHHHCCCSSTTGGGGSCBC
T ss_pred --------EEEEECHHHHHhcCCCCCHHHHhcCCEE
Confidence 35666665110 0124678888876654
Done!