BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044326
         (102 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UF2|A Chain A, The Atomic Structure Of Rice Dwarf Virus (Rdv)
 pdb|1UF2|B Chain B, The Atomic Structure Of Rice Dwarf Virus (Rdv)
          Length = 1019

 Score = 28.9 bits (63), Expect = 0.77,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 6/53 (11%)

Query: 13  QAGKLDTSGTAKAVISSFQKLRVSFDMDQVVSFQFQHNVCGRSIYAEGTVDAL 65
           Q  ++D +    ++   F  LR       + S +F  +V GRS++ EG +DA+
Sbjct: 824 QRRRVDNTSYTDSLSDMFNGLR------SISSSEFVRSVNGRSVFTEGRIDAI 870


>pdb|3D7R|A Chain A, Crystal Structure Of A Putative Esterase From
           Staphylococcus Aureus
 pdb|3D7R|B Chain B, Crystal Structure Of A Putative Esterase From
           Staphylococcus Aureus
          Length = 326

 Score = 26.6 bits (57), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 34  RVSFDMDQVVSFQFQHNVCGRSIYAEGTVDAL 65
           ++S D  QV  F F+H +  + +Y  G  +AL
Sbjct: 78  KLSLDDXQVFRFNFRHQIDKKILYIHGGFNAL 109


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.133    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,501,201
Number of Sequences: 62578
Number of extensions: 74696
Number of successful extensions: 175
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 173
Number of HSP's gapped (non-prelim): 2
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)