BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044326
(102 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LB01|DAPB2_ARATH 4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic
OS=Arabidopsis thaliana GN=DAPB2 PE=2 SV=1
Length = 349
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/129 (57%), Positives = 86/129 (66%), Gaps = 36/129 (27%)
Query: 1 FSGYFLQVLESHQAGKLDTSGTAKAVISSFQKLRVSFDMDQV------------------ 42
F+GY L+V+ESHQA KLD SGTAKAVIS FQKL VS+DMDQ+
Sbjct: 221 FAGYSLEVMESHQASKLDASGTAKAVISCFQKLGVSYDMDQIQLIRDPKQQIEVVGVPEE 280
Query: 43 ------------------VSFQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKCISNMI 84
VSF+FQHNVCGRSIYAEGTVDA+LFL+KK++SKA+K I NMI
Sbjct: 281 HVSGHAFHLYHLTSPDKTVSFEFQHNVCGRSIYAEGTVDAVLFLAKKIRSKAEKRIYNMI 340
Query: 85 DVLREGNMQ 93
DVLREGNM+
Sbjct: 341 DVLREGNMR 349
>sp|O80574|DAPB1_ARATH 4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic
OS=Arabidopsis thaliana GN=DAPB1 PE=2 SV=2
Length = 347
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 84/129 (65%), Gaps = 36/129 (27%)
Query: 1 FSGYFLQVLESHQAGKLDTSGTAKAVISSFQKLRVSFDMDQV------------------ 42
FSGY L V+ESHQA KLD SGTAKAVIS FQ+L VS+DMDQ+
Sbjct: 219 FSGYSLDVMESHQASKLDASGTAKAVISCFQELGVSYDMDQIQLIRDPKQQVEMVGVPEE 278
Query: 43 ------------------VSFQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKCISNMI 84
VSF+FQHNVCGRSIYAEGTVDA+LFL+KK++ KAD+ I NMI
Sbjct: 279 HISGHAFHLYHLTSPDETVSFEFQHNVCGRSIYAEGTVDAVLFLAKKIRLKADQRIYNMI 338
Query: 85 DVLREGNMQ 93
DVLREGNM+
Sbjct: 339 DVLREGNMR 347
>sp|Q67W29|DAPB1_ORYSJ Probable 4-hydroxy-tetrahydrodipicolinate reductase 1,
chloroplastic OS=Oryza sativa subsp. japonica GN=DAPB1
PE=2 SV=1
Length = 343
Score = 131 bits (330), Expect = 1e-30, Method: Composition-based stats.
Identities = 71/129 (55%), Positives = 82/129 (63%), Gaps = 36/129 (27%)
Query: 1 FSGYFLQVLESHQAGKLDTSGTAKAVISSFQKLRVSFDM--------------------- 39
FSGY L+V+ESHQA KLD SGTAKAVIS FQKL VSF++
Sbjct: 215 FSGYKLEVMESHQATKLDISGTAKAVISCFQKLGVSFNLNEVKQVRDPQEQLTLVGVPEE 274
Query: 40 ---------------DQVVSFQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKCISNMI 84
D+ VSF+FQHNVCGRSIYAEGTVDA LFL KK+QS A+K + +MI
Sbjct: 275 HLSGHAFHMYHLTSPDETVSFEFQHNVCGRSIYAEGTVDAALFLHKKIQSGANKKLYDMI 334
Query: 85 DVLREGNMQ 93
DVLREGNM+
Sbjct: 335 DVLREGNMR 343
>sp|Q10P67|DAPB2_ORYSJ Probable 4-hydroxy-tetrahydrodipicolinate reductase 2,
chloroplastic OS=Oryza sativa subsp. japonica GN=DAPB2
PE=2 SV=1
Length = 325
Score = 126 bits (316), Expect = 4e-29, Method: Composition-based stats.
Identities = 68/129 (52%), Positives = 80/129 (62%), Gaps = 36/129 (27%)
Query: 1 FSGYFLQVLESHQAGKLDTSGTAKAVISSFQKLRVSFDM--------------------- 39
FSGY L+VLESHQAGKLD SGTAKAVI+ F+KL VS+DM
Sbjct: 197 FSGYHLEVLESHQAGKLDISGTAKAVIACFEKLGVSYDMNRMVKIRDPEQQLEMVGVPEE 256
Query: 40 ---------------DQVVSFQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKCISNMI 84
D VSF+FQHNVCGRSIYAEG+VDA +FL +KV+S K I +MI
Sbjct: 257 HIEGHAFHLYHLTSPDDSVSFEFQHNVCGRSIYAEGSVDAAMFLHRKVRSNDSKRIYDMI 316
Query: 85 DVLREGNMQ 93
DVLREG+M+
Sbjct: 317 DVLREGSMR 325
>sp|Q478D8|Y4067_DECAR Probable transcriptional regulatory protein Daro_4067
OS=Dechloromonas aromatica (strain RCB) GN=Daro_4067
PE=3 SV=1
Length = 241
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 22 TAKAVISSFQKLRVSFDMDQVVSFQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKCIS 81
T V +F K + D V+FQF+H CG+ I+A GT + L + +++ AD +
Sbjct: 109 TVAEVRHAFSKFGGNMGSDGCVAFQFKH--CGQMIFAPGTDEGAL-MDAAIEAGADDVTT 165
Query: 82 N---MIDVLREGN 91
N I+VL N
Sbjct: 166 NDDGSIEVLTPPN 178
>sp|Q7NTD5|Y3123_CHRVO Probable transcriptional regulatory protein CV_3123
OS=Chromobacterium violaceum (strain ATCC 12472 / DSM
30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757)
GN=CV_3123 PE=3 SV=1
Length = 241
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 22 TAKAVISSFQKLRVSFDMDQVVSFQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKCIS 81
T V +F K + D V+FQF+H CG ++A G VD + +++ A+ +S
Sbjct: 109 TVADVRHAFSKYGGNMGTDGCVAFQFKH--CGYLVFAPG-VDEDALMEAALEAGAEDVVS 165
Query: 82 N 82
N
Sbjct: 166 N 166
>sp|A1K2Y6|Y574_AZOSB Probable transcriptional regulatory protein azo0574 OS=Azoarcus sp.
(strain BH72) GN=azo0574 PE=3 SV=1
Length = 241
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 22 TAKAVISSFQKLRVSFDMDQVVSFQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKCIS 81
T V +F K + D V+FQF+H CG+ ++A GT D + +++ A+ ++
Sbjct: 109 TVADVRHAFSKYGGNMGTDGCVAFQFKH--CGQLMFAPGT-DEDALMEAALEAGAEDVVA 165
Query: 82 N 82
N
Sbjct: 166 N 166
>sp|O65924|Y2921_ARATH Putative leucine-rich repeat receptor-like protein kinase At2g19210
OS=Arabidopsis thaliana GN=At2g19210 PE=3 SV=1
Length = 881
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 20 SGTAKAVISSFQKLRVSFDMDQVVSFQFQHNVCGRSIYAEGTVDALLFLSKKVQSK-ADK 78
SG V+S ++L++S D Q ++ HN C I A + +++K+Q+K AD
Sbjct: 661 SGEKSYVLSWEERLQISLDAAQ--GLEYLHNGCKPPIVQRDVKPANILINEKLQAKIADF 718
Query: 79 CISNMIDVLREGNMQD 94
+S + + +GN QD
Sbjct: 719 GLSRSVAL--DGNNQD 732
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,659,756
Number of Sequences: 539616
Number of extensions: 968907
Number of successful extensions: 2320
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2311
Number of HSP's gapped (non-prelim): 14
length of query: 102
length of database: 191,569,459
effective HSP length: 71
effective length of query: 31
effective length of database: 153,256,723
effective search space: 4750958413
effective search space used: 4750958413
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)