Query 044326
Match_columns 102
No_of_seqs 139 out of 862
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 13:33:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044326.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044326hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02775 Probable dihydrodipic 100.0 1.7E-33 3.7E-38 223.1 9.8 92 1-92 158-285 (286)
2 TIGR02130 dapB_plant dihydrodi 100.0 3.8E-33 8.1E-38 220.2 9.8 92 1-92 147-274 (275)
3 PF05173 DapB_C: Dihydrodipico 100.0 1.3E-32 2.7E-37 196.3 9.2 81 3-87 19-132 (132)
4 COG0289 DapB Dihydrodipicolina 100.0 4.6E-32 1E-36 213.4 8.6 84 1-89 144-266 (266)
5 TIGR00036 dapB dihydrodipicoli 100.0 8.2E-31 1.8E-35 202.7 9.3 83 1-88 145-266 (266)
6 PRK00048 dihydrodipicolinate r 100.0 1.2E-30 2.7E-35 200.3 9.6 83 1-88 135-256 (257)
7 PF10391 DNA_pol_lambd_f: Fing 65.7 6.1 0.00013 24.1 2.2 29 55-91 6-34 (52)
8 PF14000 Packaging_FI: DNA pac 27.4 41 0.00089 24.3 1.6 16 17-32 20-35 (125)
9 PTZ00421 coronin; Provisional 20.6 53 0.0012 27.9 1.2 31 59-92 363-393 (493)
10 cd02896 complement_C3_C4_C5 Pr 18.1 81 0.0018 24.5 1.7 32 61-94 264-296 (297)
No 1
>PLN02775 Probable dihydrodipicolinate reductase
Probab=100.00 E-value=1.7e-33 Score=223.13 Aligned_cols=92 Identities=78% Similarity=1.093 Sum_probs=78.6
Q ss_pred CCCceEEEEccccCCCCChhhHHHHHHHHHHhcCCCCC---------CC----ce---------------------EE--
Q 044326 1 FSGYFLQVLESHQAGKLDTSGTAKAVISSFQKLRVSFD---------MD----QV---------------------VS-- 44 (102)
Q Consensus 1 f~~yDieI~E~HH~~K~DaSGTA~~La~~i~~~g~~~~---------~~----~i---------------------e~-- 44 (102)
|++||+||+|+||++|+|+||||++|++.|..+|.+++ .. .| |+
T Consensus 158 f~~yDiEIiE~HH~~K~DaSGTA~~lae~i~~~g~~~~~~~~~~~R~~~~~~~~igi~~~~lRgg~~HtV~f~~~~E~~~ 237 (286)
T PLN02775 158 FSGYTLEVVESHQATKLDTSGTAKAVISSFRKLGVSFDMDQIELIRDPKQQLEGVGVPEEHLNGHAFHTYRLTSPDGTVS 237 (286)
T ss_pred cCCCCEEEEECCCCCCCCCcHHHHHHHHHHHHhCCcccccccccccCccccccccceeeecccCCCcEEEEEecCCCeEE
Confidence 67899999999999999999999999999875543210 00 11 77
Q ss_pred EEEEEeeCCchhhHHHHHHHHHHhhccccCCCCCCceehHHHhcCCcc
Q 044326 45 FQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKCISNMIDVLREGNM 92 (102)
Q Consensus 45 Iel~H~A~sR~~FA~GAv~AA~wL~~k~~~~~~~G~Y~M~DvL~~g~~ 92 (102)
|||+|+|+||++||.|||+||+||.+|+.++.+||+|+|.|||+.|.|
T Consensus 238 iel~H~A~sR~~FA~GAv~AA~wL~~k~~~~~~pGlY~M~DVL~~~~~ 285 (286)
T PLN02775 238 FEFQHNVCGRSIYAEGTVDAVLFLAKKIAEGADKRIYNMIDVLREGNM 285 (286)
T ss_pred EEEEEEeCcHHHHHHHHHHHHHHHhcCcccCCCCCccCHHHHHhhcCC
Confidence 999999999999999999999999998666667999999999998875
No 2
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=100.00 E-value=3.8e-33 Score=220.15 Aligned_cols=92 Identities=65% Similarity=0.993 Sum_probs=78.8
Q ss_pred CCCceEEEEccccCCCCChhhHHHHHHHHHHhcCCCC---------CCC-ce------------------------EE--
Q 044326 1 FSGYFLQVLESHQAGKLDTSGTAKAVISSFQKLRVSF---------DMD-QV------------------------VS-- 44 (102)
Q Consensus 1 f~~yDieI~E~HH~~K~DaSGTA~~La~~i~~~g~~~---------~~~-~i------------------------e~-- 44 (102)
|++||+||+|+||++|+|+||||++|++.++.+|.++ ++. +| |+
T Consensus 147 f~~ydvEIiE~HH~~K~DaSGTA~~l~~~i~~~~~~~~~~~~~~~R~~~~~igi~siR~~~vgGh~~Htv~f~s~~e~i~ 226 (275)
T TIGR02130 147 FAGYKLEVMESHQASKADASGTAKAVIGCFQKLGFDYDMDDIEKIRDEKEQIERMGVPEEHLGGHAFHLYHLDSADGTVH 226 (275)
T ss_pred cCCCCEEEEEcCCCCCCCCCHHHHHHHHHHHHhCCccCcccccccCCCCCccceEEecCcccCCCccEEEEEecCCCeEE
Confidence 6799999999999999999999999999987543211 111 22 67
Q ss_pred EEEEEeeCCchhhHHHHHHHHHHhhccccCCCCCCceehHHHhcCCcc
Q 044326 45 FQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKCISNMIDVLREGNM 92 (102)
Q Consensus 45 Iel~H~A~sR~~FA~GAv~AA~wL~~k~~~~~~~G~Y~M~DvL~~g~~ 92 (102)
|||+|+|+||++||.||++||+||.+|++++.+||+|+|.|||+.|.+
T Consensus 227 iel~H~A~sR~~FA~GAl~AA~wL~~k~~~~~~~GlY~m~DvL~~~~~ 274 (275)
T TIGR02130 227 FEFQHNVCGRKIYAEGTVDAVLFLADKIIAAAEAKIFNMIDVLREGKM 274 (275)
T ss_pred EEEEEEECcHHHHHHHHHHHHHHHhcccccCCCCCccCHHHHHhhcCC
Confidence 799999999999999999999999998766778999999999998876
No 3
>PF05173 DapB_C: Dihydrodipicolinate reductase, C-terminus; InterPro: IPR022663 This entry represents the C-terminal region of Dihydrodipicolinate reductase. Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 1YL6_B 1YL5_A 1YL7_C 1P9L_B 1C3V_B ....
Probab=99.98 E-value=1.3e-32 Score=196.29 Aligned_cols=81 Identities=33% Similarity=0.488 Sum_probs=65.2
Q ss_pred CceEEEEccccCCCCCh-hhHHHHHHHHHHhcCC-C------C---CCCce----------------------EEEEEEE
Q 044326 3 GYFLQVLESHQAGKLDT-SGTAKAVISSFQKLRV-S------F---DMDQV----------------------VSFQFQH 49 (102)
Q Consensus 3 ~yDieI~E~HH~~K~Da-SGTA~~La~~i~~~g~-~------~---~~~~i----------------------e~Iel~H 49 (102)
+||+||+|+||++|+|+ ||||++|++.|.+... + . ..++| |+|||+|
T Consensus 19 ~~dieI~E~HH~~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~~~~~~~i~v~s~R~g~i~G~H~V~f~~~~E~i~l~H 98 (132)
T PF05173_consen 19 GYDIEIIESHHRQKKDAPSGTALMLAESIAEARDRDLSEVARGGREQENEIGVHSVRGGGIVGEHEVIFGSPGETIELTH 98 (132)
T ss_dssp TSEEEEEEEE-TT-SSSS-HHHHHHHHHHHHHTTSEHHHHEEECCGETTCEEEEEEE-TT--EEEEEEEEETTEEEEEEE
T ss_pred CCCEEEEEcccCCCCCCCCHHHHHHHHHHHHhcCccccccccccccCCccceEEEEEcCCCCEEEEEEEcCCCcEEEEEE
Confidence 49999999999999997 9999999999985421 0 0 12222 9999999
Q ss_pred eeCCchhhHHHHHHHHHHhhccccCCCCCCceehHHHh
Q 044326 50 NVCGRSIYAEGTVDALLFLSKKVQSKADKCISNMIDVL 87 (102)
Q Consensus 50 ~A~sR~~FA~GAv~AA~wL~~k~~~~~~~G~Y~M~DvL 87 (102)
+|+||++||.||++||+||.++ ++||+|+|.|||
T Consensus 99 ~a~sR~~Fa~Gal~Aa~~l~~~----~~~G~y~m~dvL 132 (132)
T PF05173_consen 99 RAHSRSIFAEGALRAARWLAGK----KKPGLYSMDDVL 132 (132)
T ss_dssp EESSTHHHHHHHHHHHHHHTTS----SSSEEE-HHHHC
T ss_pred EeCCHHHHHHHHHHHHHHHhcC----CCCCEEehHHhC
Confidence 9999999999999999999985 268999999997
No 4
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=99.97 E-value=4.6e-32 Score=213.42 Aligned_cols=84 Identities=24% Similarity=0.351 Sum_probs=71.9
Q ss_pred CCCceEEEEccccCCCCCh-hhHHHHHHHHHHhc-CCC---------------CCCCce---------------------
Q 044326 1 FSGYFLQVLESHQAGKLDT-SGTAKAVISSFQKL-RVS---------------FDMDQV--------------------- 42 (102)
Q Consensus 1 f~~yDieI~E~HH~~K~Da-SGTA~~La~~i~~~-g~~---------------~~~~~i--------------------- 42 (102)
|++|||||+|+||++|+|| ||||++|++.|++. +.+ ..+.+|
T Consensus 144 l~~~DiEIiE~HHr~K~DAPSGTAl~lae~ia~~~~~~~~~~~v~~r~G~~g~r~~~~Igi~svR~G~ivG~H~V~F~~~ 223 (266)
T COG0289 144 LDDYDIEIIEAHHRHKKDAPSGTALKLAEAIAEARGQDLKDEAVYGREGATGARKEGEIGIHSVRGGDIVGEHEVIFAGE 223 (266)
T ss_pred cCCCCEEehhhhcccCCCCCcHHHHHHHHHHHHhhccccccceeecccCCcCCCCCCCceeEEeecCCcceeEEEEEecC
Confidence 4689999999999999998 99999999999863 311 011123
Q ss_pred -EEEEEEEeeCCchhhHHHHHHHHHHhhccccCCCCCCceehHHHhcC
Q 044326 43 -VSFQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKCISNMIDVLRE 89 (102)
Q Consensus 43 -e~Iel~H~A~sR~~FA~GAv~AA~wL~~k~~~~~~~G~Y~M~DvL~~ 89 (102)
|+|||+|+|+||.+||.||++||+||.+| +||+|+|.|||++
T Consensus 224 GE~iei~H~A~sR~~Fa~Gal~aa~wi~~k-----~~g~Y~m~dvL~l 266 (266)
T COG0289 224 GERIEIRHRATSRDSFARGALLAARWLVGK-----PPGLYDMEDVLGL 266 (266)
T ss_pred CcEEEEEEeeccHHHHHHHHHHHHHHHhCC-----CCCccchHHhhcc
Confidence 99999999999999999999999999987 6899999999963
No 5
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=99.97 E-value=8.2e-31 Score=202.68 Aligned_cols=83 Identities=25% Similarity=0.408 Sum_probs=70.4
Q ss_pred CCCceEEEEccccCCCCCh-hhHHHHHHHHHHhc-CCC------C---------CCCce---------------------
Q 044326 1 FSGYFLQVLESHQAGKLDT-SGTAKAVISSFQKL-RVS------F---------DMDQV--------------------- 42 (102)
Q Consensus 1 f~~yDieI~E~HH~~K~Da-SGTA~~La~~i~~~-g~~------~---------~~~~i--------------------- 42 (102)
|++||+||+|+||++|+|+ ||||++|++.|++. +.+ + ..++|
T Consensus 145 l~~~dieI~E~HH~~K~DaPSGTA~~l~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~i~i~s~R~g~i~g~h~v~f~~~ 224 (266)
T TIGR00036 145 LGDYDIEIIELHHRHKKDAPSGTALKTAEMIAEARGERLKNVAVTEREGLTGERGREEIGIHAVRGGDVVGEHTVMFAGD 224 (266)
T ss_pred ccCCCEEeeeeccCCCCCCCCHHHHHHHHHHHHhhccccccCccccccCCcCCCCCCccceEEEecCCceEEEEEEEcCC
Confidence 5789999999999999997 99999999998742 110 0 01222
Q ss_pred -EEEEEEEeeCCchhhHHHHHHHHHHhhccccCCCCCCceehHHHhc
Q 044326 43 -VSFQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKCISNMIDVLR 88 (102)
Q Consensus 43 -e~Iel~H~A~sR~~FA~GAv~AA~wL~~k~~~~~~~G~Y~M~DvL~ 88 (102)
|+|||+|+|+||++||.||++||+||.+| +||+|+|+|||+
T Consensus 225 ~e~i~i~H~a~~R~~fa~Gal~Aa~~l~~~-----~~g~y~m~dvl~ 266 (266)
T TIGR00036 225 GERLEITHRASSRACFANGAVRAARWLADK-----EAGVYDMEDVLD 266 (266)
T ss_pred CeEEEEEEEECcHHHhHHHHHHHHHHHcCC-----CCcEEeHHHhcC
Confidence 99999999999999999999999999987 689999999983
No 6
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=99.97 E-value=1.2e-30 Score=200.31 Aligned_cols=83 Identities=24% Similarity=0.384 Sum_probs=69.8
Q ss_pred CCCceEEEEccccCCCCCh-hhHHHHHHHHHHhc-CCCC---------------CCCce---------------------
Q 044326 1 FSGYFLQVLESHQAGKLDT-SGTAKAVISSFQKL-RVSF---------------DMDQV--------------------- 42 (102)
Q Consensus 1 f~~yDieI~E~HH~~K~Da-SGTA~~La~~i~~~-g~~~---------------~~~~i--------------------- 42 (102)
|++||+||+|+||++|+|+ ||||++|++.|.+. +.++ .+.+|
T Consensus 135 l~~~d~ei~E~HH~~K~DaPSGTA~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~R~g~~~g~h~v~f~~~ 214 (257)
T PRK00048 135 LGDYDIEIIEAHHRHKVDAPSGTALKLAEAIAEARGRDLKEVAVYGREGATGARVKGEIGIHSVRGGDIVGEHEVIFAGD 214 (257)
T ss_pred cCCCCEEEEEccCCCCCCCCCHHHHHHHHHHHHhhcccccccceeccCCccCCcCCCCccEEEEEcCCceEEEEEEEecC
Confidence 4459999999999999997 99999999998642 2110 01122
Q ss_pred -EEEEEEEeeCCchhhHHHHHHHHHHhhccccCCCCCCceehHHHhc
Q 044326 43 -VSFQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKCISNMIDVLR 88 (102)
Q Consensus 43 -e~Iel~H~A~sR~~FA~GAv~AA~wL~~k~~~~~~~G~Y~M~DvL~ 88 (102)
|+|+|+|+|+||++||.||++||+||.+| +||+|+|.|||+
T Consensus 215 ~e~i~i~H~a~~R~~fa~Gal~aa~~~~~~-----~~g~y~~~d~l~ 256 (257)
T PRK00048 215 GERIEIRHDATSRMSFAPGALLAARWLVGK-----KPGLYGMEDVLG 256 (257)
T ss_pred CcEEEEEEEECcHHhHHHHHHHHHHHHhCC-----CCcEECHHHhhC
Confidence 99999999999999999999999999987 589999999984
No 7
>PF10391 DNA_pol_lambd_f: Fingers domain of DNA polymerase lambda; InterPro: IPR018944 DNA polymerases catalyse the addition of dNMPs onto the 3-prime ends of DNA chains. There is a general polymerase fold consisting of three subdomains that have been likened to the fingers, palm, and thumb of a right hand. This entry represents the central three-helical region of DNA polymerase lambda referred to as the F and G helices of the fingers domain. Contacts with DNA involve this conserved helix-hairpin-helix motif in the fingers region which interacts with the primer strand. This motif is common to several DNA binding proteins and confers a sequence-independent interaction with the DNA backbone []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 1KDH_A 1KEJ_A 1JMS_A 2IHM_A 3OGU_A 1MQ2_A 2P66_A 7ICI_A 1ZQN_A 1ZQK_A ....
Probab=65.71 E-value=6.1 Score=24.11 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=19.7
Q ss_pred hhhHHHHHHHHHHhhccccCCCCCCceehHHHhcCCc
Q 044326 55 SIYAEGTVDALLFLSKKVQSKADKCISNMIDVLREGN 91 (102)
Q Consensus 55 ~~FA~GAv~AA~wL~~k~~~~~~~G~Y~M~DvL~~g~ 91 (102)
.+|.-|...|.+|.. .|+-|++||-..++
T Consensus 6 ~I~GVG~~tA~~w~~--------~G~rtl~Dl~~~~~ 34 (52)
T PF10391_consen 6 GIWGVGPKTARKWYA--------KGIRTLEDLRKSKS 34 (52)
T ss_dssp TSTT--HHHHHHHHH--------TT--SHHHHHHGGC
T ss_pred hcccccHHHHHHHHH--------hCCCCHHHHhhhhc
Confidence 467889999999997 38999999965333
No 8
>PF14000 Packaging_FI: DNA packaging protein FI
Probab=27.38 E-value=41 Score=24.26 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=13.2
Q ss_pred CChhhHHHHHHHHHHh
Q 044326 17 LDTSGTAKAVISSFQK 32 (102)
Q Consensus 17 ~DaSGTA~~La~~i~~ 32 (102)
.|-||||..|++.+++
T Consensus 20 ~d~SGSaAeiaqRVAE 35 (125)
T PF14000_consen 20 PDMSGSAAEIAQRVAE 35 (125)
T ss_pred CCccccHHHHHHHHHH
Confidence 4569999999998874
No 9
>PTZ00421 coronin; Provisional
Probab=20.62 E-value=53 Score=27.95 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhccccCCCCCCceehHHHhcCCcc
Q 044326 59 EGTVDALLFLSKKVQSKADKCISNMIDVLREGNM 92 (102)
Q Consensus 59 ~GAv~AA~wL~~k~~~~~~~G~Y~M~DvL~~g~~ 92 (102)
.=|+.|.+|+.++ .++|-+.||++++.+-.+
T Consensus 363 ~p~~ta~ew~~G~---~~~p~~~sl~~~~~~~~~ 393 (493)
T PTZ00421 363 HPAITADEYFSGG---NAEPLVYDMSAVFDGTSP 393 (493)
T ss_pred CCccCHHHHhCCC---CCCCeEEEchhhccCCCc
Confidence 4489999999865 367889999999876544
No 10
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=18.05 E-value=81 Score=24.54 Aligned_cols=32 Identities=9% Similarity=0.097 Sum_probs=21.1
Q ss_pred HHHHHHHhhccccCCCCCCceehHH-HhcCCcccc
Q 044326 61 TVDALLFLSKKVQSKADKCISNMID-VLREGNMQD 94 (102)
Q Consensus 61 Av~AA~wL~~k~~~~~~~G~Y~M~D-vL~~g~~~~ 94 (102)
|..+++||.++.+ ...|+.|-+| |+.+-.|.+
T Consensus 264 a~~iv~WL~~qr~--~~Ggf~sTQdTvval~AL~~ 296 (297)
T cd02896 264 ANPIARWLTEQRN--YGGGFGSTQDTVVALQALAE 296 (297)
T ss_pred HHHHHHHHHhcCC--CCCCeehHHHHHHHHHHHhc
Confidence 6678999988632 3468888888 445444443
Done!