Query 044326
Match_columns 102
No_of_seqs 139 out of 862
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 23:50:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044326.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044326hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vm6_A DHPR, dihydrodipicolina 100.0 6.8E-32 2.3E-36 207.2 9.1 84 1-90 128-227 (228)
2 4f3y_A DHPR, dihydrodipicolina 100.0 2.5E-31 8.7E-36 205.9 10.0 83 2-89 150-271 (272)
3 3qy9_A DHPR, dihydrodipicolina 100.0 2.2E-31 7.4E-36 203.5 9.4 81 1-86 127-243 (243)
4 1dih_A Dihydrodipicolinate red 100.0 3.8E-31 1.3E-35 203.8 10.2 83 2-89 149-270 (273)
5 3ijp_A DHPR, dihydrodipicolina 100.0 7.7E-31 2.6E-35 205.7 9.9 83 2-89 165-286 (288)
6 1p9l_A Dihydrodipicolinate red 100.0 8E-29 2.8E-33 189.5 10.3 80 5-90 125-245 (245)
7 1f06_A MESO-diaminopimelate D- 60.7 12 0.00041 28.2 4.7 38 44-86 260-302 (320)
8 4gow_A Potassium voltage-gated 27.5 26 0.00088 22.3 1.4 32 60-93 14-50 (72)
9 3ut4_A CTHE_2751, putative unc 15.0 34 0.0012 23.8 -0.0 15 83-97 29-45 (134)
10 3tj5_B Metavinculin, SCA-famil 11.6 1E+02 0.0034 16.0 1.2 17 61-88 6-22 (27)
No 1
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3
Probab=99.97 E-value=6.8e-32 Score=207.19 Aligned_cols=84 Identities=27% Similarity=0.409 Sum_probs=71.1
Q ss_pred CCCceEEEEccccCCCCCh-hhHHHHHHHHHHhcCCCC---------CCCce------EEEEEEEeeCCchhhHHHHHHH
Q 044326 1 FSGYFLQVLESHQAGKLDT-SGTAKAVISSFQKLRVSF---------DMDQV------VSFQFQHNVCGRSIYAEGTVDA 64 (102)
Q Consensus 1 f~~yDieI~E~HH~~K~Da-SGTA~~La~~i~~~g~~~---------~~~~i------e~Iel~H~A~sR~~FA~GAv~A 64 (102)
|++|||||+|+||++|+|+ ||||++|++.|.. ++.+ .+.+| |+|||+|+|+||++||.||++|
T Consensus 128 l~~ydiEIiE~HH~~K~DAPSGTAl~lae~i~~-~I~i~svR~g~ivg~H~V~F~~~gE~iei~H~a~sR~~Fa~Gal~A 206 (228)
T 1vm6_A 128 LEDWDVEIVETHHRFKKDAPSGTAILLESALGK-SVPIHSLRVGGVPGDHVVVFGNIGETIEIKHRAISRTVFAIGALKA 206 (228)
T ss_dssp TTTSEEEEEEEECTTCCCSSCHHHHHHHHHTTS-CCCEEEEECTTCCCEEEEEEECSSEEEEEEEEECCTHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCCCCCCHHHHHHHHhccc-CCCEEEEECCCCcEEEEEEEeCCCcEEEEEEEeCcHHHhHhHHHHH
Confidence 4689999999999999997 9999999999842 1111 11122 9999999999999999999999
Q ss_pred HHHhhccccCCCCCCceehHHHhcCC
Q 044326 65 LLFLSKKVQSKADKCISNMIDVLREG 90 (102)
Q Consensus 65 A~wL~~k~~~~~~~G~Y~M~DvL~~g 90 (102)
|+||.+| +||+|+|+|||+.|
T Consensus 207 a~~l~~~-----~~G~Y~m~dvL~~g 227 (228)
T 1vm6_A 207 AEFLVGK-----DPGMYSFEEVIFGG 227 (228)
T ss_dssp HHHHTTC-----CSEEECHHHHHTC-
T ss_pred HHHHhcC-----CCCEecHHHHhcCC
Confidence 9999987 68999999999876
No 2
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=99.97 E-value=2.5e-31 Score=205.92 Aligned_cols=83 Identities=30% Similarity=0.436 Sum_probs=71.5
Q ss_pred CCceEEEEccccCCCCCh-hhHHHHHHHHHHh-cCCC---------------CCCCce----------------------
Q 044326 2 SGYFLQVLESHQAGKLDT-SGTAKAVISSFQK-LRVS---------------FDMDQV---------------------- 42 (102)
Q Consensus 2 ~~yDieI~E~HH~~K~Da-SGTA~~La~~i~~-~g~~---------------~~~~~i---------------------- 42 (102)
++|||||+|+||++|+|+ ||||++|++.|.+ ++.+ ...++|
T Consensus 150 ~~~diei~E~HH~~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~r~g~~g~r~~~~i~i~s~R~g~ivg~h~v~f~~~~ 229 (272)
T 4f3y_A 150 QGYDIEIIEAHHRHKVDAPSGTALMMGETIAAATGRSLDDCAVYGRHGVTGERDPSTIGFSAIRGGDIVGDHTVLFAGIG 229 (272)
T ss_dssp SSCEEEEEEEECTTCCSSSCHHHHHHHHHHHHTTTCCHHHHEEECCCSCCCSCCTTCEEEEEEECTTCCEEEEEEEECSS
T ss_pred cCCCEEEEEecCCCCCCCCCHHHHHHHHHHHHHhCcccccccccccccccCCCCCCccCEEEEECCCCceEEEEEEcCCC
Confidence 589999999999999997 9999999999874 2321 112233
Q ss_pred EEEEEEEeeCCchhhHHHHHHHHHHhhccccCCCCCCceehHHHhcC
Q 044326 43 VSFQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKCISNMIDVLRE 89 (102)
Q Consensus 43 e~Iel~H~A~sR~~FA~GAv~AA~wL~~k~~~~~~~G~Y~M~DvL~~ 89 (102)
|+|||+|+|+||++||.||++||+||.+| +||+|+|+|||++
T Consensus 230 e~i~i~H~a~~R~~fa~Ga~~Aa~~~~~~-----~~g~y~m~dvl~~ 271 (272)
T 4f3y_A 230 ERIEITHKSASRVSYAQGALRAARFLAGR-----DAGFFDMQDVLGL 271 (272)
T ss_dssp EEEEEEEEECCTHHHHHHHHHHHHHHHTC-----SSEEECHHHHTTC
T ss_pred cEEEEEEEeCcHHHHHHHHHHHHHHHhcC-----CCcEEcHHHHhCC
Confidence 99999999999999999999999999987 6899999999975
No 3
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}
Probab=99.97 E-value=2.2e-31 Score=203.54 Aligned_cols=81 Identities=20% Similarity=0.357 Sum_probs=69.1
Q ss_pred CCCceEEEEccccCCCCCh-hhHHHHHHHHHHhcCCCC-------------CCCce----------------------EE
Q 044326 1 FSGYFLQVLESHQAGKLDT-SGTAKAVISSFQKLRVSF-------------DMDQV----------------------VS 44 (102)
Q Consensus 1 f~~yDieI~E~HH~~K~Da-SGTA~~La~~i~~~g~~~-------------~~~~i----------------------e~ 44 (102)
|++|||||+|+||++|+|+ ||||++|++.|..++..+ +.++| |+
T Consensus 127 l~~~dieI~E~HH~~K~DaPSGTA~~la~~i~~~~~~~~~~~~r~~~~~~r~~~~i~i~s~R~g~ivg~h~v~f~~~~e~ 206 (243)
T 3qy9_A 127 LDDFDIELTEAHHNKKVDAPSGTLEKLYDVIVSLKENVTPVYDRHELNEKRQPQDIGIHSIRGGTIVGEHEVLFAGTDET 206 (243)
T ss_dssp TTTSEEEEEEEECTTCCSSSCHHHHHHHHHHHHHSTTCEEECCCTTTCCCCCTTEEEEEEEECTTCCEEEEEEEEETTEE
T ss_pred cCCCCEEEEEcCCCCCCCCCCHHHHHHHHHHHhcCcccccccccccccCCccCCcceEEEEECCCCcEEEEEEEcCCCcE
Confidence 4569999999999999997 999999999994333211 12233 99
Q ss_pred EEEEEeeCCchhhHHHHHHHHHHhhccccCCCCCCceehHHH
Q 044326 45 FQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKCISNMIDV 86 (102)
Q Consensus 45 Iel~H~A~sR~~FA~GAv~AA~wL~~k~~~~~~~G~Y~M~Dv 86 (102)
|||+|+|+||++||.||++||+||.+| +||+|+|+||
T Consensus 207 i~i~H~a~sR~~Fa~Ga~~Aa~~l~~~-----~~g~y~m~dv 243 (243)
T 3qy9_A 207 IQITHRAQSKDIFANGAIQAAERLVNK-----PNGFYTFDNL 243 (243)
T ss_dssp EEEEEEESCTHHHHHHHHHHHHHHTTS-----CSEEECTTTC
T ss_pred EEEEEEeCcHHHHHHHHHHHHHHHccC-----CCcEeccccC
Confidence 999999999999999999999999987 6899999996
No 4
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*
Probab=99.97 E-value=3.8e-31 Score=203.79 Aligned_cols=83 Identities=28% Similarity=0.395 Sum_probs=71.3
Q ss_pred CCceEEEEccccCCCCCh-hhHHHHHHHHHHh-cCCCC---------------CCCce----------------------
Q 044326 2 SGYFLQVLESHQAGKLDT-SGTAKAVISSFQK-LRVSF---------------DMDQV---------------------- 42 (102)
Q Consensus 2 ~~yDieI~E~HH~~K~Da-SGTA~~La~~i~~-~g~~~---------------~~~~i---------------------- 42 (102)
++|||||+|+||++|+|+ ||||+++++.|.+ ++.++ ..++|
T Consensus 149 ~~~dieiiE~Hh~~K~DaPSGTA~~~ae~i~~~~~~~~~~~~~~~r~~~~~~r~~~~i~i~s~R~g~vvg~h~v~f~~~g 228 (273)
T 1dih_A 149 DYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIG 228 (273)
T ss_dssp TTSEEEEEEEECTTCCSSSCHHHHHHHHHHHHHTTCCGGGTEECCCCSCCCSCCTTCEEEEEEECTTCCEEEEEEEEETT
T ss_pred CCCCEEEEEeecCCCCCCCCHHHHHHHHHHHHhhCCCccccccccccCccCCCCCCcceEEEEeCCCCCccEEEEEcCCC
Confidence 579999999999999997 9999999999964 23211 12333
Q ss_pred EEEEEEEeeCCchhhHHHHHHHHHHhhccccCCCCCCceehHHHhcC
Q 044326 43 VSFQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKCISNMIDVLRE 89 (102)
Q Consensus 43 e~Iel~H~A~sR~~FA~GAv~AA~wL~~k~~~~~~~G~Y~M~DvL~~ 89 (102)
|+|||+|+|+||++||.||++||+||.+| +||+|+|+|||++
T Consensus 229 e~i~i~H~a~~R~~fa~Ga~~Aa~~l~~~-----~~g~y~m~dvl~l 270 (273)
T 1dih_A 229 ERLEITHKASSRMTFANGAVRSALWLSGK-----ESGLFDMRDVLDL 270 (273)
T ss_dssp EEEEEEEEECSTHHHHHHHHHHHHHHTTC-----CSSEECHHHHTTG
T ss_pred cEEEEEEEeCCHHHHHHHHHHHHHHHhcC-----CCCEEcHHHhhCC
Confidence 99999999999999999999999999987 6899999999965
No 5
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=99.97 E-value=7.7e-31 Score=205.74 Aligned_cols=83 Identities=25% Similarity=0.392 Sum_probs=71.5
Q ss_pred CCceEEEEccccCCCCCh-hhHHHHHHHHHHh-cCCC---------------CCCCce----------------------
Q 044326 2 SGYFLQVLESHQAGKLDT-SGTAKAVISSFQK-LRVS---------------FDMDQV---------------------- 42 (102)
Q Consensus 2 ~~yDieI~E~HH~~K~Da-SGTA~~La~~i~~-~g~~---------------~~~~~i---------------------- 42 (102)
++|||||+|+||++|+|+ ||||++|++.|.+ ++.+ ..+++|
T Consensus 165 ~~~dieIiE~HH~~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~r~g~~g~r~~~~i~i~s~R~g~ivg~h~V~f~~~~ 244 (288)
T 3ijp_A 165 DDFDIEIYEMHHANKVDSPSGTALLLGQAAAEGRNIMLKNVSVNGRSGHTGKREKGTIGFACSRGGTVIGDHSITFAGEN 244 (288)
T ss_dssp TTSEEEEEEEECTTCCCSSCHHHHHHHHHHHHHTTSCHHHHEEECGGGCCSCCCTTCEEEEEEECTTCCEEEEEEEEETT
T ss_pred CCCCEEEEEccCCCCCCCCCHHHHHHHHHHHHHhCCCcccccccccccccCCcCCCCccEEEEECCCCCEEEEEEecCCC
Confidence 589999999999999997 9999999999863 2321 112333
Q ss_pred EEEEEEEeeCCchhhHHHHHHHHHHhhccccCCCCCCceehHHHhcC
Q 044326 43 VSFQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKCISNMIDVLRE 89 (102)
Q Consensus 43 e~Iel~H~A~sR~~FA~GAv~AA~wL~~k~~~~~~~G~Y~M~DvL~~ 89 (102)
|+|||+|+|+||++||.||++||+||.+| +||+|+|+|||++
T Consensus 245 e~i~i~H~a~sR~~Fa~Ga~~Aa~~l~~~-----~~g~y~m~dvL~~ 286 (288)
T 3ijp_A 245 ERIVLSHIAQERSIFANGALKAALWAKNH-----ENGLYSMLDVLGL 286 (288)
T ss_dssp EEEEEEEEECCTHHHHHHHHHHHHHHTTC-----CSEEECHHHHHCC
T ss_pred cEEEEEEEeCcHHHHHHHHHHHHHHHhcC-----CCcEEeHHHHhCc
Confidence 99999999999999999999999999987 6899999999975
No 6
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=99.96 E-value=8e-29 Score=189.48 Aligned_cols=80 Identities=19% Similarity=0.270 Sum_probs=67.3
Q ss_pred eEEEEccccCCCCCh-hhHHHHHHHHHHhc-C-CC----C---------C--CCce----------------------EE
Q 044326 5 FLQVLESHQAGKLDT-SGTAKAVISSFQKL-R-VS----F---------D--MDQV----------------------VS 44 (102)
Q Consensus 5 DieI~E~HH~~K~Da-SGTA~~La~~i~~~-g-~~----~---------~--~~~i----------------------e~ 44 (102)
||||+|+||++|+|+ ||||++|++.|.+. + .+ . . .++| |+
T Consensus 125 dieIiE~HH~~K~DaPSGTA~~lae~i~~~~~~~~~~~~~~~~~~~g~r~~~~~~i~i~s~R~g~ivg~h~V~f~~~~e~ 204 (245)
T 1p9l_A 125 SAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATSTSLPGARGADVDGIPVHAVRLAGLVAHQEVLFGTEGET 204 (245)
T ss_dssp EEEEEEEECTTCCSSSCHHHHHHHHHHHHHTTTSCCCCCCCCSCCTTTTCEEETTEEEEEEECTTCCEEEEEEEEETTEE
T ss_pred CEEEEECcccCCCCCCCHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCcceEEEEECCCCCeEEEEEEcCCCcE
Confidence 999999999999997 99999999999752 2 10 0 0 0233 99
Q ss_pred EEEEEeeCCchhhHHHHHHHHHHhhccccCCCCCC-ceehHHHhcCC
Q 044326 45 FQFQHNVCGRSIYAEGTVDALLFLSKKVQSKADKC-ISNMIDVLREG 90 (102)
Q Consensus 45 Iel~H~A~sR~~FA~GAv~AA~wL~~k~~~~~~~G-~Y~M~DvL~~g 90 (102)
|||+|+|+||++||.||++||+||.+ +|| +|+|+|||+++
T Consensus 205 i~i~H~a~sR~~Fa~Ga~~Aa~~l~~------~~Gl~y~m~dvl~l~ 245 (245)
T 1p9l_A 205 LTIRHDSLDRTSFVPGVLLAVRRIAE------RPGLTVGLEPLLDLH 245 (245)
T ss_dssp EEEEEEECSGGGGHHHHHHHHHHGGG------SCEEEESSHHHHSCC
T ss_pred EEEEEEeCchhhhHHHHHHHHHHHhc------CCCCEEcHHHhhCCC
Confidence 99999999999999999999999984 489 69999999754
No 7
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*
Probab=60.70 E-value=12 Score=28.15 Aligned_cols=38 Identities=5% Similarity=0.042 Sum_probs=27.0
Q ss_pred EEEEEEeeCCchhh-HHHHHHHHHH----hhccccCCCCCCceehHHH
Q 044326 44 SFQFQHNVCGRSIY-AEGTVDALLF----LSKKVQSKADKCISNMIDV 86 (102)
Q Consensus 44 ~Iel~H~A~sR~~F-A~GAv~AA~w----L~~k~~~~~~~G~Y~M~Dv 86 (102)
.|+++.+..+.-.| |.=+|.||.+ ++.- +||+|+|.|+
T Consensus 260 ~~~~~~~~~~~~~~ta~~~v~~~~~~~~~~~~~-----~~G~~t~~d~ 302 (320)
T 1f06_A 260 TVEYILKLDRNPDFTASSQIAFGRAAHRMKQQG-----QSGAFTVLEV 302 (320)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHHHHHHHHHTT-----CCEEECGGGS
T ss_pred eEEEEecCCCCcchhhHHHHHHHHHHHHHHhcC-----CCCCcccccC
Confidence 47777777655555 4446677777 6543 7999999997
No 8
>4gow_A Potassium voltage-gated channel subfamily KQT MEM; protein complex, protein binding, ION channel, calmodulin, P channel; 2.60A {Homo sapiens}
Probab=27.54 E-value=26 Score=22.26 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=7.5
Q ss_pred HHHHHHHHhhccc--cCCCCCCceehHHHhc---CCccc
Q 044326 60 GTVDALLFLSKKV--QSKADKCISNMIDVLR---EGNMQ 93 (102)
Q Consensus 60 GAv~AA~wL~~k~--~~~~~~G~Y~M~DvL~---~g~~~ 93 (102)
-|++..+|+..|. .+.. ..|+..||++ .|-+.
T Consensus 14 rair~mkf~VarrkFkeal--rPYDVkDVIEQYSaGHld 50 (72)
T 4gow_A 14 RSIRILKFLVAKRKFKETL--RPYDVKDVIEQYSAGHLD 50 (72)
T ss_dssp HHHHHHHHHHHHHHC------------------------
T ss_pred HHHHHHHHHHHHHHHHHhc--CcccHHHHHHHHhhhHHH
Confidence 3556667776543 2222 3599999985 45443
No 9
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=14.96 E-value=34 Score=23.78 Aligned_cols=15 Identities=20% Similarity=0.105 Sum_probs=10.9
Q ss_pred hHHHhc--CCccccchh
Q 044326 83 MIDVLR--EGNMQDMNK 97 (102)
Q Consensus 83 M~DvL~--~g~~~~~~~ 97 (102)
+.-++. .+||||||=
T Consensus 29 i~p~lp~LL~WLQD~NW 45 (134)
T 3ut4_A 29 IEPIIFDLLKWLQDYNW 45 (134)
T ss_dssp HHHHHHHHHGGGSCTTS
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 455553 789999994
No 10
>3tj5_B Metavinculin, SCA-family protein; cytoskeleton, epidemic typhus, spotted fever, alpha-HE bundle domain, protein-protein interactions; 1.99A {Rickettsia rickettsii}
Probab=11.55 E-value=1e+02 Score=16.05 Aligned_cols=17 Identities=29% Similarity=0.237 Sum_probs=12.5
Q ss_pred HHHHHHHhhccccCCCCCCceehHHHhc
Q 044326 61 TVDALLFLSKKVQSKADKCISNMIDVLR 88 (102)
Q Consensus 61 Av~AA~wL~~k~~~~~~~G~Y~M~DvL~ 88 (102)
.+.||.-|.. +|+|+|+
T Consensus 6 vlnAA~~LS~-----------sMQdLLn 22 (27)
T 3tj5_B 6 LLNAATALSG-----------SMQYLLN 22 (27)
T ss_dssp HHHHHHHHHH-----------HHHHHHH
T ss_pred HHHHHHHHHH-----------HHHHHHH
Confidence 5677777752 6999985
Done!