BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044334
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 77/124 (62%), Gaps = 2/124 (1%)
Query: 221 VIEGVQFRNLSAEEGVAKIENI--RVTARSSVPDKLLTVQSLKPKGYVVAVTGDGTNDAP 278
VI G+Q +++ E V + V AR+S KL+ V+S + G +VAVTGDG ND+P
Sbjct: 674 VINGMQLKDMDPSELVEALRTHPEMVFARTSPQQKLVIVESCQRLGAIVAVTGDGVNDSP 733
Query: 279 APKVADIGPWMGIEGTKWAKEGSDIIIMDDNFTSVVTDQRWGRCVNNNIQKCLQFQLTVN 338
A K ADIG MGI G+ AK +D+I++DDNF S+VT GR + +N++K + + LT N
Sbjct: 734 ALKKADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKN 793
Query: 339 FAAL 342
L
Sbjct: 794 IPEL 797
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 61 GDQIPADGLFLNGHSLKVDECSMTGETD 88
GD++PAD L KVD S+TGE++
Sbjct: 206 GDRVPADIRILQAQGRKVDNSSLTGESE 233
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 90/152 (59%), Gaps = 4/152 (2%)
Query: 193 NRNNTDVAAKSLRCMAFARTKVAEADDEVIEGVQFRNLSAEE--GVAKIENIRVTARSSV 250
N D+AA+ + ++ +A V+ G +++++E+ + K V AR+S
Sbjct: 607 NETVEDIAAR--LNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSP 664
Query: 251 PDKLLTVQSLKPKGYVVAVTGDGTNDAPAPKVADIGPWMGIEGTKWAKEGSDIIIMDDNF 310
KL+ V+ + +G +VAVTGDG ND+PA K ADIG MGI G+ +K+ +D+I++DDNF
Sbjct: 665 QQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNF 724
Query: 311 TSVVTDQRWGRCVNNNIQKCLQFQLTVNFAAL 342
S+VT GR + +N++K + + LT N +
Sbjct: 725 ASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEI 756
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 61 GDQIPADGLFLNGHSLKVDECSMTGETDRWLWLRARHFCWNEHCLGTRDEMGNREFLGTN 120
GD+IPAD ++ + KVD S+TGE++ R+ F NE+ L TR N F TN
Sbjct: 165 GDRIPADLRIISANGCKVDNSSLTGESEP--QTRSPDFT-NENPLETR----NIAFFSTN 217
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 90/152 (59%), Gaps = 4/152 (2%)
Query: 193 NRNNTDVAAKSLRCMAFARTKVAEADDEVIEGVQFRNLSAEE--GVAKIENIRVTARSSV 250
N D+AA+ + ++ +A V+ G +++++E+ + K V AR+S
Sbjct: 613 NETVEDIAAR--LNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSP 670
Query: 251 PDKLLTVQSLKPKGYVVAVTGDGTNDAPAPKVADIGPWMGIEGTKWAKEGSDIIIMDDNF 310
KL+ V+ + +G +VAVTGDG ND+PA K ADIG MGI G+ +K+ +D+I++DDNF
Sbjct: 671 QQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNF 730
Query: 311 TSVVTDQRWGRCVNNNIQKCLQFQLTVNFAAL 342
S+VT GR + +N++K + + LT N +
Sbjct: 731 ASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEI 762
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 61 GDQIPADGLFLNGHSLKVDECSMTGETDRWLWLRARHFCWNEHCLGTRDEMGNREFLGTN 120
GD+IPAD ++ + KVD S+TGE++ R+ F NE+ L TR N F TN
Sbjct: 171 GDRIPADLRIISANGCKVDNSSLTGESEP--QTRSPDFT-NENPLETR----NIAFFSTN 223
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 77/124 (62%), Gaps = 2/124 (1%)
Query: 221 VIEGVQFRNLSAE--EGVAKIENIRVTARSSVPDKLLTVQSLKPKGYVVAVTGDGTNDAP 278
V+ G ++LS E + + V AR+S KL+ V+ + +G +VAVTGDG ND+P
Sbjct: 669 VVHGSDLKDLSTEVLDDILHYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSP 728
Query: 279 APKVADIGPWMGIEGTKWAKEGSDIIIMDDNFTSVVTDQRWGRCVNNNIQKCLQFQLTVN 338
A K ADIG MGI G+ +K+ +D+I++DDNF S+VT GR + +N++K + + LT N
Sbjct: 729 ALKKADIGVAMGISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSN 788
Query: 339 FAAL 342
+
Sbjct: 789 IPEI 792
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 61 GDQIPADGLFLNGHSLKVDECSMTGETDRWLWLRARHFCWNEHCLGTRDEMGNREFLGTN 120
GD+IPAD ++ H KVD S+TGE++ R+ F +E+ L TR N F TN
Sbjct: 201 GDRIPADLRIISAHGCKVDNSSLTGESEP--QTRSPEFS-SENPLETR----NIAFFSTN 253
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
Query: 216 EADDEVIEGVQFRNLSAEEGVAKIENIRVTARSSVPDKLLTVQSLKPKGYVVAVTGDGTN 275
E D G +F +L E AR K V+ L+ + A+TGDG N
Sbjct: 648 EVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVN 707
Query: 276 DAPAPKVADIGPWMGIEGTKWAKEGSDIIIMDDNFTSVVTDQRWGRCVNNNIQKCLQFQL 335
DAPA K A+IG MG GT AK S++++ DDNF+++V GR + NN+++ +++ +
Sbjct: 708 DAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLI 766
Query: 336 TVNFAALIVNIFAA 349
+ N ++ A
Sbjct: 767 SSNVGEVVCIFLTA 780
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
Query: 216 EADDEVIEGVQFRNLSAEEGVAKIENIRVTARSSVPDKLLTVQSLKPKGYVVAVTGDGTN 275
E D G +F +L E AR K V+ L+ + A+TGDG N
Sbjct: 647 EVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVN 706
Query: 276 DAPAPKVADIGPWMGIEGTKWAKEGSDIIIMDDNFTSVVTDQRWGRCVNNNIQKCLQFQL 335
DAPA K A+IG MG GT AK S++++ DDNF+++V GR + NN+++ +++ +
Sbjct: 707 DAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLI 765
Query: 336 TVNFAALIVNIFAA 349
+ N ++ A
Sbjct: 766 SSNVGEVVCIFLTA 779
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
Query: 216 EADDEVIEGVQFRNLSAEEGVAKIENIRVTARSSVPDKLLTVQSLKPKGYVVAVTGDGTN 275
E D G +F +L E AR K V+ L+ + A+TGDG N
Sbjct: 647 EVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVN 706
Query: 276 DAPAPKVADIGPWMGIEGTKWAKEGSDIIIMDDNFTSVVTDQRWGRCVNNNIQKCLQFQL 335
DAPA K A+IG MG GT AK S++++ DDNF+++V GR + NN+++ +++ +
Sbjct: 707 DAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLI 765
Query: 336 TVNFAALIVNIFAA 349
+ N ++ A
Sbjct: 766 SSNVGEVVCIFLTA 779
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 1/131 (0%)
Query: 219 DEVIEGVQFRNLSAEEGVAKIENIRVTARSSVPDKLLTVQSLKPKGYVVAVTGDGTNDAP 278
D G +F +L E AR K V+ L+ + A+TGDG NDAP
Sbjct: 649 DRAYTGREFDDLPLAEQREACRRACCFARVEPTHKSKIVEYLQSFDEITAMTGDGVNDAP 708
Query: 279 APKVADIGPWMGIEGTKWAKEGSDIIIMDDNFTSVVTDQRWGRCVNNNIQKCLQFQLTVN 338
A K A+IG MG GT AK S++++ DDNF+++V GR + NN+++ +++ ++ N
Sbjct: 709 ALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSN 767
Query: 339 FAALIVNIFAA 349
++ A
Sbjct: 768 VGEVVCIFLTA 778
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 234 EGVAKIENIRVTARSSVP-DKLLTVQSLKPKGYVVAVTGDGTNDAPAPKVADIGPWMGIE 292
E VA I+ +P DK V LK KG +VA+ GDG NDAPA ADIG MG
Sbjct: 585 EAVAGTLGIKKVVAEIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPALAKADIGIAMG-T 643
Query: 293 GTKWAKEGSDIIIMDDNFTSVVTDQRWGRCVNNNIQKCLQFQLTVN 338
GT A E + + ++ + + +R +NI++ L F N
Sbjct: 644 GTDVAIESAGVTLLHGDLRGIAKARRLSESTMSNIRQNLFFAFIYN 689
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 256 TVQSLKPKGYVVAVTGDGTNDAPAPKVADIGPWMGIEGTK-WAKEGSDIIIMDDNFTSVV 314
V+ L+ +GY+VA+TGDG NDAP+ K AD G + +EG+ A+ +DI+ + +++
Sbjct: 618 VVEILQQRGYLVAMTGDGVNDAPSLKKADTG--IAVEGSSDAARSAADIVFLAPGLGAII 675
Query: 315 TDQRWGRCVNNNIQKCLQFQLTVNF 339
+ R + + + + +++ ++
Sbjct: 676 DALKTSRQIFHRMYAYVVYRIALSI 700
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 257 VQSLKPKGYVVAVTGDGTNDAPAPKVADIGPWMGIEGTKWAKEGSDIIIMDDNFTSVVTD 316
V+ L+ K VVA GDG NDAPA AD+G +G G+ A E DI+++ D+ VV
Sbjct: 590 VKKLQAK-EVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAA 647
Query: 317 QRWGRCVNNNIQKCLQFQLTVNF------AALIVNIFAAVQKFR 354
+ R + I++ + + L N A L+ IF V FR
Sbjct: 648 IQLSRKTMSKIKQNIFWALIYNVILIPAAAGLLYPIFGVV--FR 689
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Query: 266 VVAVTGDGTNDAPAPKVADIGPWMGIEGTKWAKEGSDIIIMDDNFTSVVTDQRWGRCVNN 325
VVA GDG NDAPA AD+G +G G+ A E DI+++ D+ VV + R +
Sbjct: 520 VVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMS 578
Query: 326 NIQKCLQFQLTVNF------AALIVNIFAAVQKFR 354
I++ + + L N A L+ IF V FR
Sbjct: 579 KIKQNIFWALIYNVILIPAAAGLLYPIFGVV--FR 611
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 253 KLLTVQSLKPKGYVVAVTGDGTNDAPAPKVADIGPWMGIEGTKWAKEGSDIIIMDDNFTS 312
K V+ L+ + ++V +TGDG NDAPA K ADIG + + T A+ SDI++ + +
Sbjct: 569 KYEIVKKLQERKHIVGMTGDGVNDAPALKKADIGIAVA-DATDAARGASDIVLTEPGLSV 627
Query: 313 VVTDQRWGRCVNNNIQKCLQFQLTVNF 339
+++ R + ++ + +++
Sbjct: 628 IISAVLTSRAIFQRMKNYTIYAVSITI 654
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 61 GDQIPADGLFLNGHSLKVDECSMTGET 87
GD IPAD L G LKVD+ ++TGE+
Sbjct: 159 GDIIPADARLLEGDPLKVDQSALTGES 185
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 257 VQSLKPKGYVVAVTGDGTNDAPAPKVADIGPWMGIEGTKWAKEGSDIIIMDDNFTSVVTD 316
V+ L+ K VVA GDG NDAPA AD+G +G G+ A E DI+++ D+ VV
Sbjct: 218 VKKLQAK-EVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAA 275
Query: 317 QRWGRCVNNNIQ 328
+ R + I+
Sbjct: 276 IQLSRKTMSKIK 287
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 257 VQSLKPKGYVVAVTGDGTNDAPAPKVADIGPWMGIEGTKWAKEGSDIIIMDDNFTSVVTD 316
V+ L+ K VVA GDG NDAPA AD+G +G G+ A E DI+++ D+ VV
Sbjct: 218 VKKLQAK-EVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAA 275
Query: 317 QRWGRCVNNNIQ 328
+ R + I+
Sbjct: 276 IQLSRKTMSKIK 287
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 257 VQSLKPKGYVVAVTGDGTNDAPAPKVADIGPWMGIEGTKWAKEGSDIIIMDDNFTSVVTD 316
V+ L+ K VVA GDG NDAPA AD+G +G G+ A E DI+++ D+ VV
Sbjct: 198 VKKLQAK-EVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAA 255
Query: 317 QRWGR 321
+ R
Sbjct: 256 IQLSR 260
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 265 YVVAVTGDGTNDAPAPKVADIGPWMGIEGTKWAKEGSDIIIMDDN 309
YV A+ GDG NDAPA AD+G +G GT A E +DI+++ ++
Sbjct: 206 YVTAMVGDGVNDAPALAQADVGIAIG-AGTDVAVETADIVLVRND 249
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 252 DKLLTVQSLKPKGYVVAVTGDGTNDAPAPKVADIGPWMGIEGTKWAKEGSDIIIMDDN 309
+K V+ ++ K YV A+ GDG NDAPA AD+G +G GT A E +DI+++ ++
Sbjct: 194 EKAEKVKEVQQK-YVTAMVGDGVNDAPALAQADVGIAIG-AGTDVAVETADIVLVRND 249
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
Query: 257 VQSLKPKGYVVAVTGDGTNDAPAPKVADIGPWMGIEGTKWAKEGSDIIIMDDNFTSVV 314
V+ L+ K VVA GDG NDAPA AD+G +G DI+++ D+ VV
Sbjct: 77 VKKLQAK-EVVAFVGDGINDAPALAQADLGIAVG---------SGDIVLIRDDLRDVV 124
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 59 VTGDQIPADGLFLNGHSLKVDECSMTGE 86
V G + P DG + GHS+ VDE +TGE
Sbjct: 51 VPGGKFPVDGRVIEGHSM-VDESLITGE 77
>pdb|2NO5|A Chain A, Crystal Structure Analysis Of A Dehalogenase With
Intermediate Complex
pdb|2NO5|B Chain B, Crystal Structure Analysis Of A Dehalogenase With
Intermediate Complex
Length = 240
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 248 SSVPDKLLTVQSLKPKGYVVAVTGDGTND 276
S+ PD T++ LK GY+VA+ +G ++
Sbjct: 105 SAYPDAAETLEKLKSAGYIVAILSNGNDE 133
>pdb|2NO4|A Chain A, Crystal Structure Analysis Of A Dehalogenase
pdb|2NO4|B Chain B, Crystal Structure Analysis Of A Dehalogenase
Length = 240
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 248 SSVPDKLLTVQSLKPKGYVVAVTGDGTND 276
S+ PD T++ LK GY+VA+ +G ++
Sbjct: 105 SAYPDAAETLEKLKSAGYIVAILSNGNDE 133
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 252 DKLLTVQSLKPKGYVVAVTGDGTNDAPAPKVADIGPWMGIEGTKWAKEGSDIIIMDDNFT 311
DK+ ++ LK G V + GDG NDA A +AD+ MG G +K +DII++ ++
Sbjct: 186 DKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSVAMG-NGVDISKNVADIILVSNDIG 244
Query: 312 SVV 314
+++
Sbjct: 245 TLL 247
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 252 DKLLTVQSLKPKGYVVAVTGDGTNDAPAPKVADIGPWMGIEGTKWAKEGSDIIIMDDNFT 311
DK+ ++ LK G V + GDG NDA A +AD+ MG G +K +DII++ ++
Sbjct: 186 DKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSVAMG-NGVDISKNVADIILVSNDIG 244
Query: 312 SVV 314
+++
Sbjct: 245 TLL 247
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 252 DKLLTVQSLKPKGYVVAVTGDGTNDAPAPKVADIGPWMGIEGTKWAKEGSDIIIMDDNFT 311
DK+ ++ LK G V + GDG NDA A +AD+ MG G +K +DII++ ++
Sbjct: 186 DKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSVAMG-NGVDISKNVADIILVSNDIG 244
Query: 312 SVV 314
+++
Sbjct: 245 TLL 247
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,682,183
Number of Sequences: 62578
Number of extensions: 364274
Number of successful extensions: 862
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 827
Number of HSP's gapped (non-prelim): 33
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)