BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044338
(704 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B0C385|RPOC2_ACAM1 DNA-directed RNA polymerase subunit beta' OS=Acaryochloris marina
(strain MBIC 11017) GN=rpoC2 PE=3 SV=1
Length = 1330
Score = 38.9 bits (89), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 297 RHEYGEVERFKRMFVCWERTSYAFKNQCRRLLAVDGWKINNPYNSVMLVA 346
R E EVERF+++ W TS K++ V +K NNP NSV ++A
Sbjct: 96 RGEITEVERFQKVIDTWNGTSEELKDEV-----VKNFKSNNPLNSVYMMA 140
>sp|Q3M5C8|RPOC2_ANAVT DNA-directed RNA polymerase subunit beta' OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=rpoC2 PE=3 SV=1
Length = 1355
Score = 38.1 bits (87), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 296 KRHEYGEVERFKRMFVCWERTSYAFKNQCRRLLAVDGWKINNPYNSVMLVA 346
+R E EVERF+++ W TS A K++ V +K NP NSV ++A
Sbjct: 86 QRGEITEVERFQKVIDTWNGTSEALKDEV-----VTHFKQTNPLNSVYMMA 131
>sp|P22705|RPOC2_NOSS1 DNA-directed RNA polymerase subunit beta' OS=Nostoc sp. (strain PCC
7120 / UTEX 2576) GN=rpoC2 PE=3 SV=2
Length = 1355
Score = 38.1 bits (87), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 296 KRHEYGEVERFKRMFVCWERTSYAFKNQCRRLLAVDGWKINNPYNSVMLVA 346
+R E EVERF+++ W TS A K++ V +K NP NSV ++A
Sbjct: 86 QRGEITEVERFQKVIDTWNGTSEALKDEV-----VTHFKQTNPLNSVYMMA 131
>sp|B2J1A0|RPOC2_NOSP7 DNA-directed RNA polymerase subunit beta' OS=Nostoc punctiforme
(strain ATCC 29133 / PCC 73102) GN=rpoC2 PE=3 SV=1
Length = 1349
Score = 37.4 bits (85), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 296 KRHEYGEVERFKRMFVCWERTSYAFKNQCRRLLAVDGWKINNPYNSVMLVA 346
+R E EVERF+++ W TS A K++ V +K NP NSV ++A
Sbjct: 86 QRGEITEVERFQKVIDTWNGTSEALKDEV-----VVHFKKTNPLNSVYMMA 131
>sp|B1XHW1|RPOC2_SYNP2 DNA-directed RNA polymerase subunit beta' OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6) GN=rpoC2 PE=3 SV=1
Length = 1331
Score = 36.2 bits (82), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 297 RHEYGEVERFKRMFVCWERTSYAFKNQCRRLLAVDGWKINNPYNSVMLVA 346
R E EVERF+++ W TS + K++ V ++ NP NSV ++A
Sbjct: 88 RGEITEVERFQKVIDTWNSTSESLKDEV-----VKNFRETNPLNSVYMMA 132
>sp|Q1E5B0|CFT1_COCIM Protein CFT1 OS=Coccidioides immitis (strain RS) GN=CFT1 PE=3 SV=1
Length = 1387
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 348 ALDGNNGILPIAFCEV--HVEDLDSWHGEGLCIMGDGDNGIDYA 389
L + +LP+AF ++ +V+ L G GLCIMGD GI +A
Sbjct: 1133 GLKEDGSLLPVAFMDMQCYVKVLKELQGTGLCIMGDALKGIWFA 1176
>sp|P48120|RPOC2_CYAPA DNA-directed RNA polymerase subunit beta'' OS=Cyanophora paradoxa
GN=rpoC2 PE=3 SV=1
Length = 1265
Score = 34.7 bits (78), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 299 EYGEVERFKRMFVCWERTSYAFKNQCRRLLAVDGWKINNPYNSVMLVA 346
E EVERF+++ W RTS K++ VD +K +P NS+ +++
Sbjct: 93 EITEVERFQKVIDIWHRTSETLKDEV-----VDYFKSTDPLNSLYMMS 135
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 267,889,552
Number of Sequences: 539616
Number of extensions: 11255987
Number of successful extensions: 32885
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 32841
Number of HSP's gapped (non-prelim): 58
length of query: 704
length of database: 191,569,459
effective HSP length: 125
effective length of query: 579
effective length of database: 124,117,459
effective search space: 71864008761
effective search space used: 71864008761
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)