Query 044338
Match_columns 704
No_of_seqs 289 out of 1100
Neff 7.6
Searched_HMMs 29240
Date Tue Mar 26 00:04:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044338.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044338hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 89.5 0.55 1.9E-05 38.0 5.3 40 199-238 35-74 (76)
2 1wj2_A Probable WRKY transcrip 89.0 0.6 2.1E-05 38.0 5.3 40 199-238 38-77 (78)
3 1nc8_A Nucleocapsid protein; H 67.8 2.2 7.4E-05 27.7 1.4 21 657-677 3-23 (29)
4 1a6b_B Momulv, zinc finger pro 57.8 10 0.00035 26.6 3.5 26 658-683 8-33 (40)
5 2rpr_A Flywch-type zinc finger 57.0 12 0.00042 30.7 4.6 45 187-238 27-74 (87)
6 1dsq_A Nucleic acid binding pr 52.5 7.5 0.00026 24.4 1.9 19 661-679 3-21 (26)
7 1u6p_A GAG polyprotein; MLV, A 51.1 19 0.00066 27.1 4.4 25 657-681 20-44 (56)
8 2ec7_A GAG polyprotein (PR55GA 44.5 12 0.00041 27.3 2.2 19 659-677 5-23 (49)
9 3ts2_A Protein LIN-28 homolog 40.0 19 0.00063 33.0 3.3 20 660-679 119-138 (148)
10 1fme_A FSD-EY peptide; beta-BE 34.1 28 0.00097 21.3 2.3 19 164-182 7-25 (28)
11 4f0h_B Ribulose bisphosphate c 33.8 60 0.0021 29.1 5.5 89 260-368 11-117 (138)
12 2ysa_A Retinoblastoma-binding 33.4 14 0.00048 27.8 1.1 20 659-678 6-25 (55)
13 2a51_A Nucleocapsid protein; s 28.8 28 0.00097 23.8 2.0 18 660-677 21-38 (39)
14 2li8_A Protein LIN-28 homolog 26.0 1.4E+02 0.0047 23.7 5.9 17 661-677 47-63 (74)
15 2cqf_A RNA-binding protein LIN 24.3 55 0.0019 25.0 3.1 21 659-679 28-48 (63)
16 2l0z_A Glycoprotein G2; zinc-b 21.6 23 0.00077 24.8 0.3 16 569-584 21-36 (42)
17 2bl6_A Nucleocapsid protein P1 21.6 43 0.0015 22.5 1.8 17 662-678 2-18 (37)
18 1a1t_A Nucleocapsid protein; s 21.3 32 0.0011 25.4 1.2 16 659-674 11-26 (55)
19 3ts2_A Protein LIN-28 homolog 21.0 37 0.0013 30.9 1.7 45 658-702 95-147 (148)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=89.47 E-value=0.55 Score=38.04 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=34.9
Q ss_pred EEEEEeeccCCCceEEEEEEecCceEEEEEeccccccccc
Q 044338 199 VVSYECFDLRCDWKIKAERVVNGRTFIVTEFVAQHKCTRR 238 (704)
Q Consensus 199 r~~~~C~~~gCpwrv~as~~~~s~~w~I~~~~~~H~C~~~ 238 (704)
|--++|+..|||++-.+.+..++....++++.++|||+..
T Consensus 35 RsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 74 (76)
T 2ayd_A 35 RSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74 (76)
T ss_dssp EEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCC
T ss_pred eeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCC
Confidence 5568999999999999988777778889999999999864
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=89.02 E-value=0.6 Score=37.97 Aligned_cols=40 Identities=20% Similarity=0.359 Sum_probs=34.6
Q ss_pred EEEEEeeccCCCceEEEEEEecCceEEEEEeccccccccc
Q 044338 199 VVSYECFDLRCDWKIKAERVVNGRTFIVTEFVAQHKCTRR 238 (704)
Q Consensus 199 r~~~~C~~~gCpwrv~as~~~~s~~w~I~~~~~~H~C~~~ 238 (704)
|--++|+..||+++-.+.+...+....++++.++|||+..
T Consensus 38 RsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 77 (78)
T 1wj2_A 38 RSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77 (78)
T ss_dssp EEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred eEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence 5568999999999999998777777888899999999863
No 3
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=67.78 E-value=2.2 Score=27.67 Aligned_cols=21 Identities=5% Similarity=0.123 Sum_probs=16.0
Q ss_pred CcccccCcccccCCCCCCCCC
Q 044338 657 SSRARQCIENNSDAAINNPQW 677 (704)
Q Consensus 657 ~kr~~~Cs~C~~~gHn~~~~~ 677 (704)
+++.+.|-+|++.||...-++
T Consensus 3 ~r~~~~C~nCgk~GH~ar~C~ 23 (29)
T 1nc8_A 3 QRKVIRCWNCGKEGHSARQCR 23 (29)
T ss_dssp CCCCCBCTTTSCBSSCGGGCC
T ss_pred CCCCCEEEECCccccCHhHCc
Confidence 446688999999999855443
No 4
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=57.80 E-value=10 Score=26.56 Aligned_cols=26 Identities=12% Similarity=0.036 Sum_probs=20.4
Q ss_pred cccccCcccccCCCCCCCCCCCCCCC
Q 044338 658 SRARQCIENNSDAAINNPQWTHPNTL 683 (704)
Q Consensus 658 kr~~~Cs~C~~~gHn~~~~~~~~~~~ 683 (704)
+...+|-+|++.||-.+-|+......
T Consensus 8 ~~~~~C~~Cgk~GH~ardCP~~~~~~ 33 (40)
T 1a6b_B 8 LDRDQCAYCKEKGHWAKDCPKKPRGP 33 (40)
T ss_dssp CCSSSCSSSCCTTCCTTSCSSSCCCT
T ss_pred CCCCeeeECCCCCcchhhCcCCcccC
Confidence 35679999999999988888765433
No 5
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=57.05 E-value=12 Score=30.67 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=32.1
Q ss_pred CceEEEEeecceEEEEEeec---cCCCceEEEEEEecCceEEEEEeccccccccc
Q 044338 187 GFKLCVMENRAHVVSYECFD---LRCDWKIKAERVVNGRTFIVTEFVAQHKCTRR 238 (704)
Q Consensus 187 ~f~~rv~kS~~~r~~~~C~~---~gCpwrv~as~~~~s~~w~I~~~~~~H~C~~~ 238 (704)
||.|...+....+....|+. .+|+++|.... +. |. ....|||++.
T Consensus 27 Gy~Y~~~~~~~~~~yWrC~~~~~~kCrARi~T~~----~~--~~-~~~~HnH~p~ 74 (87)
T 2rpr_A 27 SFLYRKEKAAGEKVYWMCRDQARLGCRSRAITQG----HR--IM-VMRSHCHQPD 74 (87)
T ss_dssp TEEEEEEEECSSCEEEEEGGGTTSCCCCEEEEET----TE--EE-ECSCCSSCCC
T ss_pred CEEEEeeecCCCcEEEEecCCCCCCCCEEEEEcC----CC--EE-CCCCcCCCCc
Confidence 67777766666677799986 58999987643 22 32 4677999874
No 6
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=52.52 E-value=7.5 Score=24.38 Aligned_cols=19 Identities=11% Similarity=0.134 Sum_probs=16.0
Q ss_pred ccCcccccCCCCCCCCCCC
Q 044338 661 RQCIENNSDAAINNPQWTH 679 (704)
Q Consensus 661 ~~Cs~C~~~gHn~~~~~~~ 679 (704)
.+|-+|++.||..+.++..
T Consensus 3 ~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC
T ss_pred CeeEeCCCCCcccccCCCc
Confidence 5799999999998877654
No 7
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=51.09 E-value=19 Score=27.14 Aligned_cols=25 Identities=12% Similarity=0.085 Sum_probs=20.0
Q ss_pred CcccccCcccccCCCCCCCCCCCCC
Q 044338 657 SSRARQCIENNSDAAINNPQWTHPN 681 (704)
Q Consensus 657 ~kr~~~Cs~C~~~gHn~~~~~~~~~ 681 (704)
+....+|-+|++.||-.+-|+..+-
T Consensus 20 ~~~~~~C~~Cge~GH~ardCp~~~~ 44 (56)
T 1u6p_A 20 QLDRDQCAYCKEKGHWAKDCPKKPR 44 (56)
T ss_dssp TCCTTBCSSSCCBSSCGGGCTTCCC
T ss_pred CCCCCcceeCCCCCcccccCcCCcc
Confidence 3456799999999999888877654
No 8
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=44.49 E-value=12 Score=27.28 Aligned_cols=19 Identities=5% Similarity=0.136 Sum_probs=10.6
Q ss_pred ccccCcccccCCCCCCCCC
Q 044338 659 RARQCIENNSDAAINNPQW 677 (704)
Q Consensus 659 r~~~Cs~C~~~gHn~~~~~ 677 (704)
+..+|-+|++.||....++
T Consensus 5 r~~~C~~Cg~~GH~a~~C~ 23 (49)
T 2ec7_A 5 KVIRCWNCGKEGHSARQCR 23 (49)
T ss_dssp CCCBCTTTCCBTCCTTTCC
T ss_pred CcCeeeecCCCCcChhhCc
Confidence 4456666666666644443
No 9
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=39.97 E-value=19 Score=32.96 Aligned_cols=20 Identities=10% Similarity=-0.024 Sum_probs=11.7
Q ss_pred cccCcccccCCCCCCCCCCC
Q 044338 660 ARQCIENNSDAAINNPQWTH 679 (704)
Q Consensus 660 ~~~Cs~C~~~gHn~~~~~~~ 679 (704)
..+|-+|++.||..+-|+..
T Consensus 119 ~~~C~~Cg~~GH~~r~Cp~~ 138 (148)
T 3ts2_A 119 PKKCHFCQSINHMVASCPLK 138 (148)
T ss_dssp CCCCTTTCCSSCCGGGCTTT
T ss_pred CCcccccCCcCCEeccCcCC
Confidence 34666666666665555544
No 10
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=34.08 E-value=28 Score=21.34 Aligned_cols=19 Identities=42% Similarity=0.817 Sum_probs=17.0
Q ss_pred cCCcEeCCHHHHHHHHHHH
Q 044338 164 YHGQRFRDVSHFRKAIEVF 182 (704)
Q Consensus 164 ~vG~~F~s~~e~k~ai~~y 182 (704)
+.|.+|.+..+++.+|..|
T Consensus 7 ykgrtfrnekelrdfiekf 25 (28)
T 1fme_A 7 YKGRTFRNEKELRDFIEKF 25 (28)
T ss_dssp SSSCEECCHHHHHHHHHHC
T ss_pred hcccccccHHHHHHHHHHh
Confidence 6899999999999999764
No 11
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=33.84 E-value=60 Score=29.11 Aligned_cols=89 Identities=15% Similarity=0.115 Sum_probs=53.2
Q ss_pred CCCcchHhhHHHHHhhcchHHHHHHhcCCCeEEEEecccccccccceeEEEEee------------------hhhHHHHH
Q 044338 260 QPNLRTVDIRDEIKATYGFKDEMERINSRNIVLLETKRHEYGEVERFKRMFVCW------------------ERTSYAFK 321 (704)
Q Consensus 260 ~~~~~~~~i~~~i~~~~g~~~~l~~~NPgs~~~i~~~~~~~d~~~~f~~~F~a~------------------~~~~~~f~ 321 (704)
.|.++..+|.+.|+-. .+-|-...|+. .++++|++-||-. .+|+++|.
T Consensus 11 LP~ltd~qI~kQI~Yl---------L~qGw~~~iEf-----~d~~~~r~~yW~mWkLPmFg~~d~~~Vl~Ele~C~k~~p 76 (138)
T 4f0h_B 11 LPDLTDEQIKKQIDYM---------ISKKLAIGIEY-----TNDIHPRNSFWEMWGLPLFEVTDPAPVLFEINACRKAKS 76 (138)
T ss_dssp SCCCCHHHHHHHHHHH---------HHTTCEEEEEE-----ESCCCTTCCCCEESSCCBCSCCSHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHH---------HhCCCEEEEEe-----CCCCCCcCCEEeecCCCCcCCCCHHHHHHHHHHHHHHCC
Confidence 4677777777766543 24577888887 5677888889863 45555555
Q ss_pred HhCccceeeeceeeccCCCceeeeeeeecCCCCeEEEEEEEeecCCc
Q 044338 322 NQCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDL 368 (704)
Q Consensus 322 ~~~r~vi~iD~t~l~~~y~g~ll~a~g~D~~~~~~pla~alv~~Et~ 368 (704)
..+=++|+||... +..-..+.|+-.-+.+.+ ||.|+..|..
T Consensus 77 ~~YVRliGfDn~~---~~qs~~~sfIV~RP~~ep---gf~l~r~e~~ 117 (138)
T 4f0h_B 77 NFYIKVVGFSSER---GIESTIISFIVNRPKHEP---GFNLIRQEDK 117 (138)
T ss_dssp TSEEEEEEEECCT---TTCEEEEEEEEECCSCCC---CEEEEEEECS
T ss_pred CCeEEEEEEeCCC---ceEEEEEEEEEeCCCCCC---ceEEEEeecC
Confidence 4455567776321 011135555555555554 5666666544
No 12
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.37 E-value=14 Score=27.80 Aligned_cols=20 Identities=10% Similarity=0.013 Sum_probs=15.7
Q ss_pred ccccCcccccCCCCCCCCCC
Q 044338 659 RARQCIENNSDAAINNPQWT 678 (704)
Q Consensus 659 r~~~Cs~C~~~gHn~~~~~~ 678 (704)
..+.|-+|++.||-..-|++
T Consensus 6 ~~~~C~kCGk~GH~~k~Cp~ 25 (55)
T 2ysa_A 6 SGYTCFRCGKPGHYIKNCPT 25 (55)
T ss_dssp SSCCCTTTCCTTSCGGGCSG
T ss_pred CCCccccCCCcCcccccCCC
Confidence 46789999999999555553
No 13
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=28.77 E-value=28 Score=23.81 Aligned_cols=18 Identities=11% Similarity=-0.055 Sum_probs=12.7
Q ss_pred cccCcccccCCCCCCCCC
Q 044338 660 ARQCIENNSDAAINNPQW 677 (704)
Q Consensus 660 ~~~Cs~C~~~gHn~~~~~ 677 (704)
...|-+|++.||....++
T Consensus 21 ~~~C~~Cg~~GH~~~~C~ 38 (39)
T 2a51_A 21 QEGCWNCGSKEHRFAQCP 38 (39)
T ss_dssp CSSCTTTCCSSSCTTTSC
T ss_pred CCccccCCCCCCccCcCc
Confidence 457888888888765543
No 14
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=25.97 E-value=1.4e+02 Score=23.66 Aligned_cols=17 Identities=12% Similarity=0.006 Sum_probs=8.5
Q ss_pred ccCcccccCCCCCCCCC
Q 044338 661 RQCIENNSDAAINNPQW 677 (704)
Q Consensus 661 ~~Cs~C~~~gHn~~~~~ 677 (704)
..|-+|++.||...-++
T Consensus 47 ~~C~~Cg~~GH~ar~Cp 63 (74)
T 2li8_A 47 KKCHFCQSISHMVASCP 63 (74)
T ss_dssp CCCTTTCCTTSCGGGCT
T ss_pred CccCCcCCcCCccCcCc
Confidence 45555555555543333
No 15
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.29 E-value=55 Score=25.03 Aligned_cols=21 Identities=10% Similarity=0.023 Sum_probs=14.5
Q ss_pred ccccCcccccCCCCCCCCCCC
Q 044338 659 RARQCIENNSDAAINNPQWTH 679 (704)
Q Consensus 659 r~~~Cs~C~~~gHn~~~~~~~ 679 (704)
+...|-+|++.||...-++..
T Consensus 28 ~~~~C~~Cg~~GH~ar~Cp~~ 48 (63)
T 2cqf_A 28 QPKKCHFCQSISHMVASCPLK 48 (63)
T ss_dssp CSSCCTTTCCSSSCTTTCTGG
T ss_pred CCCccCCcCCcCCccCcCCCc
Confidence 456788888888876666543
No 16
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=21.64 E-value=23 Score=24.76 Aligned_cols=16 Identities=25% Similarity=0.603 Sum_probs=13.5
Q ss_pred ceeeeecccccccccc
Q 044338 569 AQSCNCGLWQISGIPC 584 (704)
Q Consensus 569 ~~tCSC~~fe~~GiPC 584 (704)
...|+|+.|...|.|=
T Consensus 21 ~~~C~CG~y~~~~kp~ 36 (42)
T 2l0z_A 21 LGGCRCGKYPNLKKPT 36 (42)
T ss_dssp TSSBTTTTBCCCCCCC
T ss_pred CceeccccccCCCCcc
Confidence 4679999999999873
No 17
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=21.56 E-value=43 Score=22.54 Aligned_cols=17 Identities=6% Similarity=0.206 Sum_probs=12.6
Q ss_pred cCcccccCCCCCCCCCC
Q 044338 662 QCIENNSDAAINNPQWT 678 (704)
Q Consensus 662 ~Cs~C~~~gHn~~~~~~ 678 (704)
+|-+|++.||....++.
T Consensus 2 ~C~~Cg~~GH~~~~C~~ 18 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRA 18 (37)
T ss_dssp CBSSSCCSSCCTTTSSC
T ss_pred cccccCCCCcchhhCcC
Confidence 68888888888665543
No 18
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=21.34 E-value=32 Score=25.42 Aligned_cols=16 Identities=13% Similarity=0.455 Sum_probs=9.1
Q ss_pred ccccCcccccCCCCCC
Q 044338 659 RARQCIENNSDAAINN 674 (704)
Q Consensus 659 r~~~Cs~C~~~gHn~~ 674 (704)
+..+|-+|++.||...
T Consensus 11 ~~~~C~~Cg~~GH~a~ 26 (55)
T 1a1t_A 11 KTVKCFNCGKEGHIAK 26 (55)
T ss_dssp GTCBCTTTCCBSSCGG
T ss_pred CCcceeeeCCCCcChh
Confidence 3455666666666533
No 19
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=20.97 E-value=37 Score=30.93 Aligned_cols=45 Identities=13% Similarity=0.133 Sum_probs=25.2
Q ss_pred cccccCcccccCCCCCCCCCCCC--------CCCCCCccccCcccccccCCCC
Q 044338 658 SRARQCIENNSDAAINNPQWTHP--------NTLTHSAEEKDSLRIKSTSSDG 702 (704)
Q Consensus 658 kr~~~Cs~C~~~gHn~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 702 (704)
++..+|-+|++.||...-|+..| ....|.+..=+....+.++|.|
T Consensus 95 ~~~~~C~~Cg~~GH~a~~C~~~~~~~~C~~Cg~~GH~~r~Cp~~~~~~~~s~g 147 (148)
T 3ts2_A 95 KGGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSINHMVASCPLKAQQGPSSQG 147 (148)
T ss_dssp CCSCCCTTTCCSSCCGGGCCSCCCCCCCTTTCCSSCCGGGCTTTTC-------
T ss_pred CCCCcccEeCCccchhhhCCCCCCCCcccccCCcCCEeccCcCCCCCCCcccC
Confidence 34678999999999966555532 2446666555555555555554
Done!