Query 044340
Match_columns 155
No_of_seqs 130 out of 316
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 13:41:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044340.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044340hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03195 DUF260: Protein of un 100.0 5.4E-52 1.2E-56 308.5 9.1 101 13-113 1-101 (101)
2 PF10883 DUF2681: Protein of u 89.8 0.37 8.1E-06 35.5 3.1 50 92-146 32-81 (87)
3 COG3416 Uncharacterized protei 86.2 3.6 7.7E-05 35.2 7.2 64 56-119 14-77 (233)
4 PF09849 DUF2076: Uncharacteri 76.2 13 0.00029 31.8 7.2 60 56-115 14-73 (247)
5 PF13334 DUF4094: Domain of un 75.7 2.8 6E-05 31.0 2.6 25 88-112 71-95 (95)
6 PF11333 DUF3135: Protein of u 71.8 14 0.0003 26.8 5.4 66 37-106 15-82 (83)
7 PRK04325 hypothetical protein; 69.9 20 0.00043 25.2 5.8 26 91-116 31-56 (74)
8 PF09006 Surfac_D-trimer: Lung 69.2 12 0.00026 24.8 4.2 27 92-118 1-27 (46)
9 PF04102 SlyX: SlyX; InterPro 68.8 7.2 0.00016 26.8 3.3 27 91-117 26-52 (69)
10 PRK02793 phi X174 lysis protei 64.0 30 0.00065 24.1 5.7 27 91-117 30-56 (72)
11 PF07106 TBPIP: Tat binding pr 64.0 5.3 0.00012 31.2 2.1 80 37-116 18-105 (169)
12 PRK02119 hypothetical protein; 61.9 34 0.00074 24.0 5.7 26 91-116 31-56 (73)
13 PRK00295 hypothetical protein; 61.0 39 0.00084 23.3 5.8 28 90-117 26-53 (68)
14 PRK04406 hypothetical protein; 58.6 41 0.00088 23.8 5.6 26 91-116 33-58 (75)
15 PF06305 DUF1049: Protein of u 57.3 25 0.00054 23.1 4.2 27 91-117 42-68 (68)
16 PF12097 DUF3573: Protein of u 54.3 15 0.00033 33.5 3.5 22 91-112 43-64 (383)
17 PRK10265 chaperone-modulator p 53.5 30 0.00064 25.3 4.4 32 85-116 66-97 (101)
18 PRK00846 hypothetical protein; 52.9 57 0.0012 23.5 5.6 28 90-117 34-61 (77)
19 PRK00736 hypothetical protein; 52.5 61 0.0013 22.4 5.6 26 91-116 27-52 (68)
20 PF05308 Mito_fiss_reg: Mitoch 51.6 23 0.00051 30.4 4.1 24 97-120 122-145 (253)
21 PF06698 DUF1192: Protein of u 50.3 35 0.00076 23.4 4.0 26 92-117 23-48 (59)
22 PRK14127 cell division protein 48.0 32 0.0007 26.2 4.0 25 91-115 45-69 (109)
23 TIGR03021 pilP_fam type IV pil 45.5 76 0.0016 24.2 5.7 25 89-113 4-28 (119)
24 COG5509 Uncharacterized small 45.3 42 0.00091 23.6 3.8 24 92-115 27-50 (65)
25 PF06818 Fez1: Fez1; InterPro 44.1 35 0.00076 28.7 3.9 30 89-118 9-38 (202)
26 PF14282 FlxA: FlxA-like prote 43.7 47 0.001 24.5 4.2 27 91-117 52-78 (106)
27 PRK00888 ftsB cell division pr 43.3 44 0.00096 24.8 4.0 22 92-113 29-50 (105)
28 PRK00451 glycine dehydrogenase 40.7 22 0.00048 31.1 2.4 33 31-64 2-34 (447)
29 cd04766 HTH_HspR Helix-Turn-He 40.5 55 0.0012 22.9 4.0 30 84-114 60-89 (91)
30 PF04977 DivIC: Septum formati 40.2 74 0.0016 21.0 4.5 25 92-116 19-43 (80)
31 PLN02523 galacturonosyltransfe 39.7 81 0.0018 30.4 6.0 54 56-114 145-200 (559)
32 PF04728 LPP: Lipoprotein leuc 38.5 62 0.0013 22.1 3.8 22 92-113 12-33 (56)
33 KOG1655 Protein involved in va 38.1 79 0.0017 27.0 5.1 53 45-117 1-53 (218)
34 PF13591 MerR_2: MerR HTH fami 37.9 42 0.00091 23.6 3.0 23 88-110 61-83 (84)
35 PF04977 DivIC: Septum formati 36.7 72 0.0016 21.1 4.0 27 90-116 24-50 (80)
36 PF12325 TMF_TATA_bd: TATA ele 36.5 77 0.0017 24.3 4.5 29 88-116 14-42 (120)
37 PF15397 DUF4618: Domain of un 35.2 58 0.0013 28.3 4.0 57 53-117 52-108 (258)
38 PF07334 IFP_35_N: Interferon- 34.5 64 0.0014 23.3 3.6 23 92-114 2-24 (76)
39 TIGR02209 ftsL_broad cell divi 33.6 46 0.001 22.7 2.7 31 92-122 26-56 (85)
40 PF15300 INT_SG_DDX_CT_C: INTS 32.6 34 0.00073 23.9 1.8 27 52-78 23-51 (65)
41 PF04706 Dickkopf_N: Dickkopf 32.3 25 0.00055 23.4 1.1 16 12-27 21-36 (52)
42 PRK09039 hypothetical protein; 32.1 62 0.0014 28.6 3.8 24 90-113 137-160 (343)
43 PF03242 LEA_3: Late embryogen 31.5 17 0.00036 27.0 0.1 20 74-93 58-77 (93)
44 PF12325 TMF_TATA_bd: TATA ele 31.4 97 0.0021 23.8 4.3 27 90-116 30-56 (120)
45 PRK10963 hypothetical protein; 29.6 1.4E+02 0.003 24.6 5.3 53 53-114 7-61 (223)
46 PHA02562 46 endonuclease subun 29.5 81 0.0018 28.4 4.2 13 40-52 151-163 (562)
47 PF08227 DASH_Hsk3: DASH compl 29.2 1.1E+02 0.0024 19.9 3.7 26 91-116 3-28 (45)
48 PF15483 DUF4641: Domain of un 28.8 62 0.0013 30.3 3.3 31 85-116 414-444 (445)
49 cd01111 HTH_MerD Helix-Turn-He 28.8 1.5E+02 0.0032 21.7 4.8 29 88-116 78-106 (107)
50 TIGR02209 ftsL_broad cell divi 28.8 1.1E+02 0.0025 20.7 4.0 29 88-116 29-57 (85)
51 PF13600 DUF4140: N-terminal d 28.6 1E+02 0.0022 21.9 3.9 26 91-116 71-96 (104)
52 PF04508 Pox_A_type_inc: Viral 28.4 90 0.002 17.8 2.8 18 92-109 3-20 (23)
53 PF05120 GvpG: Gas vesicle pro 27.4 72 0.0016 23.0 2.8 34 84-117 8-41 (79)
54 PHA02047 phage lambda Rz1-like 26.9 1.5E+02 0.0031 22.7 4.5 18 98-115 35-52 (101)
55 PF05308 Mito_fiss_reg: Mitoch 26.8 67 0.0015 27.6 3.0 23 88-110 120-142 (253)
56 PF14071 YlbD_coat: Putative c 26.6 2.2E+02 0.0048 22.3 5.6 27 93-119 80-106 (124)
57 PRK10803 tol-pal system protei 25.5 94 0.002 26.3 3.7 23 91-113 55-77 (263)
58 PF07820 TraC: TraC-like prote 25.2 1.2E+02 0.0027 22.6 3.8 21 92-112 4-24 (92)
59 PF04697 Pinin_SDK_N: pinin/SD 24.6 1.1E+02 0.0025 24.3 3.7 30 91-120 4-33 (134)
60 smart00338 BRLZ basic region l 24.4 1.9E+02 0.0042 18.9 4.4 27 90-116 33-59 (65)
61 PF14282 FlxA: FlxA-like prote 24.3 91 0.002 23.0 3.0 25 96-120 50-74 (106)
62 PF11387 DUF2795: Protein of u 24.2 74 0.0016 20.1 2.2 32 34-65 6-37 (44)
63 COG3524 KpsE Capsule polysacch 23.8 99 0.0022 28.2 3.6 58 56-113 167-246 (372)
64 PF13600 DUF4140: N-terminal d 23.7 1.5E+02 0.0032 21.1 3.9 26 91-116 78-103 (104)
65 PF14197 Cep57_CLD_2: Centroso 23.6 2E+02 0.0043 20.0 4.4 31 87-117 37-67 (69)
66 PRK15396 murein lipoprotein; P 23.6 1.3E+02 0.0027 21.7 3.5 27 91-117 26-52 (78)
67 PF00172 Zn_clus: Fungal Zn(2) 23.5 51 0.0011 20.0 1.3 14 13-26 2-15 (40)
68 PF01166 TSC22: TSC-22/dip/bun 23.5 1.1E+02 0.0024 21.2 3.1 31 91-121 22-52 (59)
69 PRK14625 hypothetical protein; 23.4 1.2E+02 0.0025 23.0 3.5 28 92-119 4-31 (109)
70 PRK14626 hypothetical protein; 23.2 1.3E+02 0.0029 22.6 3.7 30 90-119 5-34 (110)
71 PF08657 DASH_Spc34: DASH comp 23.1 2.9E+02 0.0062 23.8 6.2 33 82-114 172-204 (259)
72 PF04728 LPP: Lipoprotein leuc 22.8 2E+02 0.0043 19.6 4.2 22 92-113 19-40 (56)
73 PF11853 DUF3373: Protein of u 22.8 1.5E+02 0.0033 28.1 4.7 31 83-114 18-48 (489)
74 PF11336 DUF3138: Protein of u 22.7 1.1E+02 0.0023 29.1 3.7 29 89-117 24-52 (514)
75 KOG4552 Vitamin-D-receptor int 22.7 1.4E+02 0.0031 25.9 4.2 55 54-116 59-118 (272)
76 PF04012 PspA_IM30: PspA/IM30 22.7 2E+02 0.0044 23.0 5.0 40 68-114 8-47 (221)
77 PF14623 Vint: Hint-domain 22.4 18 0.00038 29.5 -1.3 38 45-88 122-159 (162)
78 PRK14623 hypothetical protein; 22.3 1.3E+02 0.0028 22.7 3.5 28 92-119 3-30 (106)
79 PF04340 DUF484: Protein of un 21.4 1.7E+02 0.0036 23.8 4.3 54 52-114 9-64 (225)
80 KOG4496 Predicted coiled-coil 20.8 3.3E+02 0.0072 22.6 5.8 65 58-122 13-80 (194)
81 PRK14624 hypothetical protein; 20.4 1.5E+02 0.0032 22.7 3.5 30 91-120 7-36 (115)
82 PRK14622 hypothetical protein; 20.4 1.5E+02 0.0032 22.1 3.4 28 92-119 3-30 (103)
83 PF12808 Mto2_bdg: Micro-tubul 20.2 2.8E+02 0.0061 18.6 5.6 43 67-110 7-49 (52)
No 1
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=100.00 E-value=5.4e-52 Score=308.46 Aligned_cols=101 Identities=73% Similarity=1.246 Sum_probs=99.6
Q ss_pred CChhhHHhhhCCCCCCccCcCCCCCChhHHHHHHHhhccccHHHHhhcCCCcchHHHHHHHHHHHhccccCCCcchhHHH
Q 044340 13 PCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAI 92 (155)
Q Consensus 13 ~CaaCK~lRRrC~~~C~lAPyFP~~~~~~F~~vhkvFG~snv~k~L~~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I 92 (155)
+|||||||||||+++|+||||||++++++|++||||||++||+|||+++|+++|+++|+||+|||++|.+||||||+|+|
T Consensus 1 ~CaaCk~lRr~C~~~C~laPyFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~i 80 (101)
T PF03195_consen 1 PCAACKHLRRRCSPDCVLAPYFPADQPQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGII 80 (101)
T ss_pred CChHHHHHhCCCCCCCcCCCCCChhHHHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 044340 93 SSLQQQIDSLQAQLALAQAEV 113 (155)
Q Consensus 93 ~~Lq~qi~~lq~eLa~~~ael 113 (155)
+.|+|||+++++||+.++++|
T Consensus 81 ~~L~~ql~~~~~el~~~~~~l 101 (101)
T PF03195_consen 81 SQLQQQLQQLQAELALVRAQL 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHHccC
Confidence 999999999999999999875
No 2
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=89.81 E-value=0.37 Score=35.45 Aligned_cols=50 Identities=24% Similarity=0.364 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCcchhhhcccccc
Q 044340 92 ISSLQQQIDSLQAQLALAQAEVVHMRMRQVSPSSSSSHNLPANSMDHMVDHHHQA 146 (155)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~ael~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (155)
+-.|+.+.+.+++|.+.+++++.++.++|-.-.+..+. +.+.|.|+-||.
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee~~~~~-----sr~~V~d~L~q~ 81 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAETQVKNAKVRQKNEENTRRL-----SRDSVIDQLQQH 81 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccC-----CHHHHHHHHHHc
Confidence 66788899999999999999999999998775543222 566777765554
No 3
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.20 E-value=3.6 Score=35.21 Aligned_cols=64 Identities=14% Similarity=0.209 Sum_probs=55.3
Q ss_pred HHhhcCCCcchHHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044340 56 KMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVVHMRMR 119 (155)
Q Consensus 56 k~L~~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~ael~~~~~~ 119 (155)
.-|+......|+..+..||-||-++.-|--|=-+-.|..+++-|+.++++++..+..|+.++.-
T Consensus 14 ~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~~ 77 (233)
T COG3416 14 HRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQAG 77 (233)
T ss_pred HHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455566778999999999999999999999999999999999999999999999888766553
No 4
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=76.20 E-value=13 Score=31.83 Aligned_cols=60 Identities=18% Similarity=0.240 Sum_probs=54.2
Q ss_pred HHhhcCCCcchHHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044340 56 KMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVVH 115 (155)
Q Consensus 56 k~L~~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~ael~~ 115 (155)
.=|+.++...|+.-++.||-|+-.|.=|-+|=-+=.|...++=|+.++++++.++++|..
T Consensus 14 ~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 14 SRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346677777899999999999999999999999999999999999999999999999865
No 5
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=75.65 E-value=2.8 Score=31.02 Aligned_cols=25 Identities=48% Similarity=0.539 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 044340 88 CVGAISSLQQQIDSLQAQLALAQAE 112 (155)
Q Consensus 88 cvG~I~~Lq~qi~~lq~eLa~~~ae 112 (155)
-.-.|..|...|..||+||+.++++
T Consensus 71 Th~aIq~LdKtIS~LEMELAaARa~ 95 (95)
T PF13334_consen 71 THEAIQSLDKTISSLEMELAAARAE 95 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456888999999999999998864
No 6
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=71.80 E-value=14 Score=26.80 Aligned_cols=66 Identities=21% Similarity=0.413 Sum_probs=50.7
Q ss_pred CChhHHHHHHHhhccccHHHHhhcCCCcc--hHHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHHHHH
Q 044340 37 DEPQKFASVHKVFGASNVNKMLQELPEHQ--RSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQL 106 (155)
Q Consensus 37 ~~~~~F~~vhkvFG~snv~k~L~~lp~~~--R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eL 106 (155)
++|+.|....+ .-+-.++...|++. |-.++.+-|=---.|.++|+.-|+-+...++.++..+...|
T Consensus 15 ~dPe~fe~lr~----~~~ee~I~~a~~~~q~rL~~lQ~~Id~~~~~~knP~~~~~~l~~~m~~~~~~l~~~l 82 (83)
T PF11333_consen 15 NDPEAFEQLRQ----ELIEEMIESAPEEMQPRLRALQFHIDMQRSRCKNPLHRCVLLSRMMYEQFYKLNDAL 82 (83)
T ss_pred hCHHHHHHHHH----HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHhh
Confidence 46888888654 34667888888865 44555666666667889999999999999999998877655
No 7
>PRK04325 hypothetical protein; Provisional
Probab=69.95 E-value=20 Score=25.19 Aligned_cols=26 Identities=35% Similarity=0.397 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044340 91 AISSLQQQIDSLQAQLALAQAEVVHM 116 (155)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~ael~~~ 116 (155)
+|..-+++|..|+.+|......|...
T Consensus 31 vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 31 TVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777777777777776666544
No 8
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=69.24 E-value=12 Score=24.79 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 044340 92 ISSLQQQIDSLQAQLALAQAEVVHMRM 118 (155)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~ael~~~~~ 118 (155)
|..|.+|+..|+.++...|+-+..++-
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKK 27 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKK 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999988876654
No 9
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=68.76 E-value=7.2 Score=26.84 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044340 91 AISSLQQQIDSLQAQLALAQAEVVHMR 117 (155)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~ael~~~~ 117 (155)
+|...+++|+.|+.++......|..+.
T Consensus 26 ~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 26 VVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455566677777777777666665543
No 10
>PRK02793 phi X174 lysis protein; Provisional
Probab=63.97 E-value=30 Score=24.13 Aligned_cols=27 Identities=11% Similarity=0.277 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044340 91 AISSLQQQIDSLQAQLALAQAEVVHMR 117 (155)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~ael~~~~ 117 (155)
+|...+++|..|+.+|.....+|....
T Consensus 30 ~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 30 TVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456667777777777777777776543
No 11
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=63.95 E-value=5.3 Score=31.22 Aligned_cols=80 Identities=20% Similarity=0.294 Sum_probs=49.5
Q ss_pred CChhHHHHHHHhhccccHHHHhhcCCCcch---HHHHHHHHHHHhccccCCCcc-----hhHHHHHHHHHHHHHHHHHHH
Q 044340 37 DEPQKFASVHKVFGASNVNKMLQELPEHQR---SDAVSSMVYEANARVRDPVYG-----CVGAISSLQQQIDSLQAQLAL 108 (155)
Q Consensus 37 ~~~~~F~~vhkvFG~snv~k~L~~lp~~~R---~~a~~SLvYEA~aR~rDPVyG-----cvG~I~~Lq~qi~~lq~eLa~ 108 (155)
.-..-|.|+|.-||-..|.|.|..|-.+.+ ...=.+.||=++--.-+-+.. -=.-|..|+.++..++.++..
T Consensus 18 s~~di~~nL~~~~~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~ 97 (169)
T PF07106_consen 18 SAQDIFDNLHNKVGKTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKS 97 (169)
T ss_pred cHHHHHHHHHhhccHHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334689999999999999999998754332 112233455554433321111 123466677777777777777
Q ss_pred HHHHHHhh
Q 044340 109 AQAEVVHM 116 (155)
Q Consensus 109 ~~ael~~~ 116 (155)
++++|..+
T Consensus 98 l~~eL~~L 105 (169)
T PF07106_consen 98 LEAELASL 105 (169)
T ss_pred HHHHHHHH
Confidence 77777655
No 12
>PRK02119 hypothetical protein; Provisional
Probab=61.93 E-value=34 Score=23.97 Aligned_cols=26 Identities=31% Similarity=0.334 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044340 91 AISSLQQQIDSLQAQLALAQAEVVHM 116 (155)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~ael~~~ 116 (155)
+|..-+++|+.|+.+|......|...
T Consensus 31 ~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 31 ALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666777777777777777777544
No 13
>PRK00295 hypothetical protein; Provisional
Probab=61.01 E-value=39 Score=23.34 Aligned_cols=28 Identities=25% Similarity=0.219 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044340 90 GAISSLQQQIDSLQAQLALAQAEVVHMR 117 (155)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~ael~~~~ 117 (155)
.+|...+++|..|+.+|......|....
T Consensus 26 ~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 26 DVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566677788888888877777776543
No 14
>PRK04406 hypothetical protein; Provisional
Probab=58.63 E-value=41 Score=23.79 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044340 91 AISSLQQQIDSLQAQLALAQAEVVHM 116 (155)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~ael~~~ 116 (155)
+|...|++|..|+.+|......|...
T Consensus 33 ~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 33 ALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666777777777777776666543
No 15
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=57.28 E-value=25 Score=23.12 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044340 91 AISSLQQQIDSLQAQLALAQAEVVHMR 117 (155)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~ael~~~~ 117 (155)
..+.+++++..++.+++..+.|+..+|
T Consensus 42 ~~~~~r~~~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 42 SRLRLRRRIRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 346678888999999999998887543
No 16
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=54.29 E-value=15 Score=33.49 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 044340 91 AISSLQQQIDSLQAQLALAQAE 112 (155)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~ae 112 (155)
.|..||+||..||.||..++.+
T Consensus 43 ~i~~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 43 EISELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5788999999999998888776
No 17
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=53.47 E-value=30 Score=25.33 Aligned_cols=32 Identities=13% Similarity=0.203 Sum_probs=27.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044340 85 VYGCVGAISSLQQQIDSLQAQLALAQAEVVHM 116 (155)
Q Consensus 85 VyGcvG~I~~Lq~qi~~lq~eLa~~~ael~~~ 116 (155)
-+-.+++|..|-.||+.|+.++...++.|..+
T Consensus 66 n~~gialvl~LLd~i~~Lr~el~~L~~~l~~~ 97 (101)
T PRK10265 66 DWPGIAVALTLLDEIAHLKQENRLLRQRLSRF 97 (101)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34468899999999999999999999988654
No 18
>PRK00846 hypothetical protein; Provisional
Probab=52.88 E-value=57 Score=23.47 Aligned_cols=28 Identities=7% Similarity=0.009 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044340 90 GAISSLQQQIDSLQAQLALAQAEVVHMR 117 (155)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~ael~~~~ 117 (155)
.+|...+++|+.|+.+|......|....
T Consensus 34 ~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 34 EALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566677778888888887777776554
No 19
>PRK00736 hypothetical protein; Provisional
Probab=52.54 E-value=61 Score=22.35 Aligned_cols=26 Identities=4% Similarity=0.241 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044340 91 AISSLQQQIDSLQAQLALAQAEVVHM 116 (155)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~ael~~~ 116 (155)
+|..-+++|..|+.+|......|...
T Consensus 27 ~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 27 QLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566777777777777777776543
No 20
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=51.60 E-value=23 Score=30.37 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcc
Q 044340 97 QQIDSLQAQLALAQAEVVHMRMRQ 120 (155)
Q Consensus 97 ~qi~~lq~eLa~~~ael~~~~~~q 120 (155)
++|..||.||+..+++|+.+-..|
T Consensus 122 qKIsALEdELs~LRaQIA~IV~~q 145 (253)
T PF05308_consen 122 QKISALEDELSRLRAQIAKIVAAQ 145 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455666677777777776655544
No 21
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=50.30 E-value=35 Score=23.43 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044340 92 ISSLQQQIDSLQAQLALAQAEVVHMR 117 (155)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~ael~~~~ 117 (155)
|-.|+..|..|++|++.+++++...+
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688889999999999888886543
No 22
>PRK14127 cell division protein GpsB; Provisional
Probab=47.99 E-value=32 Score=26.16 Aligned_cols=25 Identities=32% Similarity=0.295 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 044340 91 AISSLQQQIDSLQAQLALAQAEVVH 115 (155)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~ael~~ 115 (155)
.+..|+.++..|+.+|+..+.++..
T Consensus 45 e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 45 EIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4556666666666666666665553
No 23
>TIGR03021 pilP_fam type IV pilus biogenesis protein PilP. Members of this protein family are found in type IV pilus biogenesis loci and include proteins designated PilP.
Probab=45.52 E-value=76 Score=24.21 Aligned_cols=25 Identities=44% Similarity=0.538 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 044340 89 VGAISSLQQQIDSLQAQLALAQAEV 113 (155)
Q Consensus 89 vG~I~~Lq~qi~~lq~eLa~~~ael 113 (155)
+|-|..||.|...++++++.++++-
T Consensus 4 ~~eLe~iQ~et~LleAq~~~akaq~ 28 (119)
T TIGR03021 4 VGQLEALQSETALLEAQLARAKAQN 28 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999988888665444
No 24
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=45.35 E-value=42 Score=23.60 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 044340 92 ISSLQQQIDSLQAQLALAQAEVVH 115 (155)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~ael~~ 115 (155)
+-.|.+.|..||.|++..++|++.
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345778888888888888888864
No 25
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=44.07 E-value=35 Score=28.70 Aligned_cols=30 Identities=37% Similarity=0.523 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 044340 89 VGAISSLQQQIDSLQAQLALAQAEVVHMRM 118 (155)
Q Consensus 89 vG~I~~Lq~qi~~lq~eLa~~~ael~~~~~ 118 (155)
.|-|+-|++||...|++++.=-.+|..++.
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ 38 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQKDSEIVSLRA 38 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 588999999999999999887777765554
No 26
>PF14282 FlxA: FlxA-like protein
Probab=43.65 E-value=47 Score=24.53 Aligned_cols=27 Identities=41% Similarity=0.438 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044340 91 AISSLQQQIDSLQAQLALAQAEVVHMR 117 (155)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~ael~~~~ 117 (155)
-+..|+.||..|+++|+.++.+.....
T Consensus 52 q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 52 QIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777777777777765443
No 27
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=43.33 E-value=44 Score=24.79 Aligned_cols=22 Identities=18% Similarity=0.076 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 044340 92 ISSLQQQIDSLQAQLALAQAEV 113 (155)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~ael 113 (155)
+..+++|++.++.+++.++++.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n 50 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARN 50 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555444443
No 28
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=40.72 E-value=22 Score=31.09 Aligned_cols=33 Identities=18% Similarity=0.627 Sum_probs=27.1
Q ss_pred CcCCCCCChhHHHHHHHhhccccHHHHhhcCCCc
Q 044340 31 APYFPADEPQKFASVHKVFGASNVNKMLQELPEH 64 (155)
Q Consensus 31 APyFP~~~~~~F~~vhkvFG~snv~k~L~~lp~~ 64 (155)
-||.|.. ++.-..+-+.||.++|-.++..+|.+
T Consensus 2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~ 34 (447)
T PRK00451 2 MPYIPHT-EEDIREMLDAIGVKSIDELFADIPEE 34 (447)
T ss_pred CCCCCCC-HHHHHHHHHHhCCCCHHHHHHhCCHH
Confidence 3999997 88888999999999997777666643
No 29
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=40.55 E-value=55 Score=22.91 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=21.1
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044340 84 PVYGCVGAISSLQQQIDSLQAQLALAQAEVV 114 (155)
Q Consensus 84 PVyGcvG~I~~Lq~qi~~lq~eLa~~~ael~ 114 (155)
|+-|. ..|..|..|++.|+.+|+..++.|.
T Consensus 60 ~l~~i-~~~l~l~~~~~~l~~~l~~l~~~~~ 89 (91)
T cd04766 60 NLAGV-KRILELEEELAELRAELDELRARLR 89 (91)
T ss_pred CHHHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44443 3344589999999999988887763
No 30
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=40.22 E-value=74 Score=21.02 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 044340 92 ISSLQQQIDSLQAQLALAQAEVVHM 116 (155)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~ael~~~ 116 (155)
+..+++++..++.+++..+++...+
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L 43 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEEL 43 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666665433
No 31
>PLN02523 galacturonosyltransferase
Probab=39.68 E-value=81 Score=30.37 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=43.2
Q ss_pred HHhhcCCC--cchHHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044340 56 KMLQELPE--HQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVV 114 (155)
Q Consensus 56 k~L~~lp~--~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~ael~ 114 (155)
..+++||+ .+|-.+|+.++++|.. .|-+..+|.+|+..|..+++++..++.+-+
T Consensus 145 ~~~~~~~~~~~~~~k~~~~~~~~a~~-----~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~ 200 (559)
T PLN02523 145 DVLRQFEKEVKERVKVARQMIAESKE-----SFDNQLKIQKLKDTIFAVNEQLTKAKKNGA 200 (559)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHh-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567775 5678899999999993 444667999999999999999998876554
No 32
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=38.52 E-value=62 Score=22.10 Aligned_cols=22 Identities=23% Similarity=0.523 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 044340 92 ISSLQQQIDSLQAQLALAQAEV 113 (155)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~ael 113 (155)
|+.|+.++++|..++..++.++
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v 33 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADV 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555554444333
No 33
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.09 E-value=79 Score=26.99 Aligned_cols=53 Identities=25% Similarity=0.433 Sum_probs=32.8
Q ss_pred HHHhhccccHHHHhhcCCCcchHHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044340 45 VHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVVHMR 117 (155)
Q Consensus 45 vhkvFG~snv~k~L~~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~ael~~~~ 117 (155)
.+|+||+.+- ..|+..=.++..|+=- | --++...|..|.+||..-+.+|...|
T Consensus 1 MnRiFG~~k~-----k~p~psL~dai~~v~~----r-----------~dSve~KIskLDaeL~k~~~Qi~k~R 53 (218)
T KOG1655|consen 1 MNRIFGRGKP-----KEPPPSLQDAIDSVNK----R-----------SDSVEKKISKLDAELCKYKDQIKKTR 53 (218)
T ss_pred CcccccCCCC-----CCCChhHHHHHHHHHH----h-----------hhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3789999872 3344444455555422 2 13566777777777777777777664
No 34
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=37.86 E-value=42 Score=23.62 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 044340 88 CVGAISSLQQQIDSLQAQLALAQ 110 (155)
Q Consensus 88 cvG~I~~Lq~qi~~lq~eLa~~~ 110 (155)
.+++|..|-.+|+.|+.++...+
T Consensus 61 gi~lil~LLd~i~~L~~el~~L~ 83 (84)
T PF13591_consen 61 GIALILDLLDRIEQLRRELRELR 83 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 46889999999999999987765
No 35
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=36.68 E-value=72 Score=21.09 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044340 90 GAISSLQQQIDSLQAQLALAQAEVVHM 116 (155)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~ael~~~ 116 (155)
..|..|+.+++.++.+....+.++..+
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346778888888888888888888755
No 36
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=36.49 E-value=77 Score=24.34 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044340 88 CVGAISSLQQQIDSLQAQLALAQAEVVHM 116 (155)
Q Consensus 88 cvG~I~~Lq~qi~~lq~eLa~~~ael~~~ 116 (155)
.+++|..|+.+|..++.|+...+.++..+
T Consensus 14 ~~~~ve~L~s~lr~~E~E~~~l~~el~~l 42 (120)
T PF12325_consen 14 SVQLVERLQSQLRRLEGELASLQEELARL 42 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666543
No 37
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=35.24 E-value=58 Score=28.29 Aligned_cols=57 Identities=23% Similarity=0.271 Sum_probs=37.3
Q ss_pred cHHHHhhcCCCcchHHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044340 53 NVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVVHMR 117 (155)
Q Consensus 53 nv~k~L~~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~ael~~~~ 117 (155)
+++.+|+.-+..+..++ ++=+-|...+. ---++.|++|+..|.+.+..++.+|..+.
T Consensus 52 ~~i~~le~~~~~~l~~a-k~eLqe~eek~-------e~~l~~Lq~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 52 TAIDILEYSNHKQLQQA-KAELQEWEEKE-------ESKLSKLQQQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred HHHHHHHccChHHHHHH-HHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555655555444443 33334444333 24688999999999999999999996543
No 38
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=34.54 E-value=64 Score=23.28 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 044340 92 ISSLQQQIDSLQAQLALAQAEVV 114 (155)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~ael~ 114 (155)
|..|+.+...|+.+|...+++|.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq 24 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQ 24 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888887777775
No 39
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=33.60 E-value=46 Score=22.70 Aligned_cols=31 Identities=16% Similarity=0.267 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 044340 92 ISSLQQQIDSLQAQLALAQAEVVHMRMRQVS 122 (155)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~ael~~~~~~q~~ 122 (155)
+..++.++..++.+++..+++...++.....
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666555554443
No 40
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=32.63 E-value=34 Score=23.90 Aligned_cols=27 Identities=26% Similarity=0.430 Sum_probs=23.3
Q ss_pred ccHHHHhhcC--CCcchHHHHHHHHHHHh
Q 044340 52 SNVNKMLQEL--PEHQRSDAVSSMVYEAN 78 (155)
Q Consensus 52 snv~k~L~~l--p~~~R~~a~~SLvYEA~ 78 (155)
+.|.++|+.+ |.+.|...+..++.||.
T Consensus 23 e~iF~lL~~vqG~~~~r~~fv~~~IkEA~ 51 (65)
T PF15300_consen 23 EKIFKLLEQVQGPLEVRKQFVEMIIKEAA 51 (65)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 3688889887 78999999999999995
No 41
>PF04706 Dickkopf_N: Dickkopf N-terminal cysteine-rich region; InterPro: IPR006796 Dickkopf proteins are a class of Wnt antagonists. They possess two conserved cysteine-rich regions. This family represents the N-terminal conserved region []. The C-terminal region has been found to share significant sequence similarity to the colipase fold (IPR001981 from INTERPRO) [].; GO: 0007275 multicellular organismal development, 0030178 negative regulation of Wnt receptor signaling pathway, 0005576 extracellular region
Probab=32.32 E-value=25 Score=23.42 Aligned_cols=16 Identities=44% Similarity=1.092 Sum_probs=14.6
Q ss_pred CCChhhHHhhhCCCCC
Q 044340 12 SPCAACKLLRRRCAQD 27 (155)
Q Consensus 12 ~~CaaCK~lRRrC~~~ 27 (155)
+.|..||-+|++|..|
T Consensus 21 ~~C~~Cr~~~~rC~Rd 36 (52)
T PF04706_consen 21 SKCLPCRKRRKRCTRD 36 (52)
T ss_pred ccChhhccCCCCCCCC
Confidence 7899999999999866
No 42
>PRK09039 hypothetical protein; Validated
Probab=32.09 E-value=62 Score=28.57 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 044340 90 GAISSLQQQIDSLQAQLALAQAEV 113 (155)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~ael 113 (155)
..|..|++||+.|+.||+.++++|
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L 160 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAAL 160 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777777777666665
No 43
>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []. This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress
Probab=31.51 E-value=17 Score=26.99 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=15.9
Q ss_pred HHHHhccccCCCcchhHHHH
Q 044340 74 VYEANARVRDPVYGCVGAIS 93 (155)
Q Consensus 74 vYEA~aR~rDPVyGcvG~I~ 93 (155)
-.|-..|..|||-|++--..
T Consensus 58 ~~~~~~W~pDPvTGyyrPen 77 (93)
T PF03242_consen 58 SKEKSSWMPDPVTGYYRPEN 77 (93)
T ss_pred cccccccccCCCCccccCCC
Confidence 56678999999999985543
No 44
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=31.38 E-value=97 Score=23.79 Aligned_cols=27 Identities=30% Similarity=0.537 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044340 90 GAISSLQQQIDSLQAQLALAQAEVVHM 116 (155)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~ael~~~ 116 (155)
|-|..|++++..++.+-..+.+||..+
T Consensus 30 ~E~~~l~~el~~l~~~r~~l~~Eiv~l 56 (120)
T PF12325_consen 30 GELASLQEELARLEAERDELREEIVKL 56 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999988754
No 45
>PRK10963 hypothetical protein; Provisional
Probab=29.62 E-value=1.4e+02 Score=24.56 Aligned_cols=53 Identities=23% Similarity=0.365 Sum_probs=35.8
Q ss_pred cHHHHhhcCCC--cchHHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044340 53 NVNKMLQELPE--HQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVV 114 (155)
Q Consensus 53 nv~k~L~~lp~--~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~ael~ 114 (155)
.|...|++=|. .+.++.+.. -++-.|..| .|+-.+.|++.|+.++...+.+|.
T Consensus 7 ~V~~yL~~~PdFf~~h~~Ll~~------L~lph~~~g---aVSL~ErQ~~~LR~r~~~Le~~l~ 61 (223)
T PRK10963 7 AVVDYLLQNPDFFIRNARLVEQ------MRVPHPVRG---TVSLVEWQMARQRNHIHVLEEEMT 61 (223)
T ss_pred HHHHHHHHCchHHhhCHHHHHh------ccCCCCCCC---eecHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777665 667777764 466777555 667777777777777776666663
No 46
>PHA02562 46 endonuclease subunit; Provisional
Probab=29.47 E-value=81 Score=28.45 Aligned_cols=13 Identities=15% Similarity=0.166 Sum_probs=5.3
Q ss_pred hHHHHHHHhhccc
Q 044340 40 QKFASVHKVFGAS 52 (155)
Q Consensus 40 ~~F~~vhkvFG~s 52 (155)
++-..+.++||..
T Consensus 151 er~~il~~l~~~~ 163 (562)
T PHA02562 151 ARRKLVEDLLDIS 163 (562)
T ss_pred hHHHHHHHHhCCH
Confidence 3333344444433
No 47
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=29.21 E-value=1.1e+02 Score=19.89 Aligned_cols=26 Identities=31% Similarity=0.257 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044340 91 AISSLQQQIDSLQAQLALAQAEVVHM 116 (155)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~ael~~~ 116 (155)
-++.|..|+..|++-|+...+.|...
T Consensus 3 q~s~L~~qL~qL~aNL~~t~~~l~~~ 28 (45)
T PF08227_consen 3 QYSHLASQLAQLQANLADTENLLEMT 28 (45)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 36788888888888888888777543
No 48
>PF15483 DUF4641: Domain of unknown function (DUF4641)
Probab=28.83 E-value=62 Score=30.32 Aligned_cols=31 Identities=32% Similarity=0.498 Sum_probs=23.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044340 85 VYGCVGAISSLQQQIDSLQAQLALAQAEVVHM 116 (155)
Q Consensus 85 VyGcvG~I~~Lq~qi~~lq~eLa~~~ael~~~ 116 (155)
+-||-.-| -||++|++|++||+..++-.-.+
T Consensus 414 ~qGCpRC~-~LQkEIedLreQLaamqsl~~kf 444 (445)
T PF15483_consen 414 AQGCPRCL-VLQKEIEDLREQLAAMQSLADKF 444 (445)
T ss_pred CCCCcccH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34666555 49999999999999998765443
No 49
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=28.77 E-value=1.5e+02 Score=21.73 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044340 88 CVGAISSLQQQIDSLQAQLALAQAEVVHM 116 (155)
Q Consensus 88 cvG~I~~Lq~qi~~lq~eLa~~~ael~~~ 116 (155)
|...+..+..+|+..+.+|+.++.+|..+
T Consensus 78 ~~~~~~~~~~~l~~~~~~L~~l~~~L~~~ 106 (107)
T cd01111 78 PEACLAQLRQKIEVRRAALNALTTQLAEM 106 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66778888889999999999988888643
No 50
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=28.76 E-value=1.1e+02 Score=20.71 Aligned_cols=29 Identities=31% Similarity=0.331 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044340 88 CVGAISSLQQQIDSLQAQLALAQAEVVHM 116 (155)
Q Consensus 88 cvG~I~~Lq~qi~~lq~eLa~~~ael~~~ 116 (155)
-..-+..++++++.++.+-...+.|+..+
T Consensus 29 ~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 29 LNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888888887654
No 51
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=28.61 E-value=1e+02 Score=21.87 Aligned_cols=26 Identities=23% Similarity=0.507 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044340 91 AISSLQQQIDSLQAQLALAQAEVVHM 116 (155)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~ael~~~ 116 (155)
.+..|+.+|+.++.+++.+++++...
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~ 96 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQAL 96 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888888888887777776543
No 52
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=28.42 E-value=90 Score=17.81 Aligned_cols=18 Identities=28% Similarity=0.492 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044340 92 ISSLQQQIDSLQAQLALA 109 (155)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~ 109 (155)
|..|+..|.+|+.+|+.-
T Consensus 3 ~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSEC 20 (23)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567888888888888754
No 53
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=27.41 E-value=72 Score=22.99 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=17.9
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044340 84 PVYGCVGAISSLQQQIDSLQAQLALAQAEVVHMR 117 (155)
Q Consensus 84 PVyGcvG~I~~Lq~qi~~lq~eLa~~~ael~~~~ 117 (155)
||.|.+-+.-+++.+.+.---.-+.++++|..+.
T Consensus 8 Pvrgv~wv~e~I~~~Ae~E~~Dp~~i~~~L~~L~ 41 (79)
T PF05120_consen 8 PVRGVVWVAEQIQEQAERELYDPAAIRRELAELQ 41 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 5555555555555554333333456777776543
No 54
>PHA02047 phage lambda Rz1-like protein
Probab=26.93 E-value=1.5e+02 Score=22.65 Aligned_cols=18 Identities=11% Similarity=0.113 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 044340 98 QIDSLQAQLALAQAEVVH 115 (155)
Q Consensus 98 qi~~lq~eLa~~~ael~~ 115 (155)
..+++.++|+.++..+.+
T Consensus 35 ~a~~la~qLE~a~~r~~~ 52 (101)
T PHA02047 35 EAKRQTARLEALEVRYAT 52 (101)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455555554444443
No 55
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=26.79 E-value=67 Score=27.60 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 044340 88 CVGAISSLQQQIDSLQAQLALAQ 110 (155)
Q Consensus 88 cvG~I~~Lq~qi~~lq~eLa~~~ 110 (155)
..--|+.||.+|..|++|+|.+-
T Consensus 120 AlqKIsALEdELs~LRaQIA~IV 142 (253)
T PF05308_consen 120 ALQKISALEDELSRLRAQIAKIV 142 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34679999999999999998643
No 56
>PF14071 YlbD_coat: Putative coat protein
Probab=26.60 E-value=2.2e+02 Score=22.26 Aligned_cols=27 Identities=7% Similarity=0.256 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044340 93 SSLQQQIDSLQAQLALAQAEVVHMRMR 119 (155)
Q Consensus 93 ~~Lq~qi~~lq~eLa~~~ael~~~~~~ 119 (155)
-.||.+|+.+..-|..+|.-|......
T Consensus 80 nq~q~hl~~~sqai~~vQ~~l~qFq~~ 106 (124)
T PF14071_consen 80 NQMQKHLNNVSQAIGSVQQVLSQFQGN 106 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 357888888888888888888765443
No 57
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=25.53 E-value=94 Score=26.34 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 044340 91 AISSLQQQIDSLQAQLALAQAEV 113 (155)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~ael 113 (155)
.+..|++||+.||.|++..+.++
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~ 77 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQI 77 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHH
Confidence 56778888888888888776555
No 58
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=25.18 E-value=1.2e+02 Score=22.61 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 044340 92 ISSLQQQIDSLQAQLALAQAE 112 (155)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~ae 112 (155)
++.|..||+.||.+|..+...
T Consensus 4 ~s~I~~eIekLqe~lk~~e~k 24 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETK 24 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567777888887777765443
No 59
>PF04697 Pinin_SDK_N: pinin/SDK conserved region; InterPro: IPR006787 This conserved region is found at the N-terminal of the member proteins. It is located adjacent and N-terminal to the pinin/SKD/memA domain IPR006786 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque [, ]. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=24.58 E-value=1.1e+02 Score=24.28 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 044340 91 AISSLQQQIDSLQAQLALAQAEVVHMRMRQ 120 (155)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~ael~~~~~~q 120 (155)
.|..||.||+.++..|..+...|..+-.+-
T Consensus 4 av~~Lq~qlE~Ake~Lk~vDenIkKltGRD 33 (134)
T PF04697_consen 4 AVRTLQAQLEKAKESLKNVDENIKKLTGRD 33 (134)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhCCC
Confidence 578899999999999999999998775554
No 60
>smart00338 BRLZ basic region leucin zipper.
Probab=24.36 E-value=1.9e+02 Score=18.93 Aligned_cols=27 Identities=11% Similarity=0.286 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044340 90 GAISSLQQQIDSLQAQLALAQAEVVHM 116 (155)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~ael~~~ 116 (155)
+-+..|..+...|+.++...+.++..+
T Consensus 33 ~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 33 RKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555443
No 61
>PF14282 FlxA: FlxA-like protein
Probab=24.28 E-value=91 Score=23.03 Aligned_cols=25 Identities=44% Similarity=0.545 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcc
Q 044340 96 QQQIDSLQAQLALAQAEVVHMRMRQ 120 (155)
Q Consensus 96 q~qi~~lq~eLa~~~ael~~~~~~q 120 (155)
+.++..|+++|..++++|..+...+
T Consensus 50 ~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 50 QQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555666665554443
No 62
>PF11387 DUF2795: Protein of unknown function (DUF2795); InterPro: IPR021527 This family of proteins has no known function.
Probab=24.22 E-value=74 Score=20.13 Aligned_cols=32 Identities=22% Similarity=0.434 Sum_probs=21.1
Q ss_pred CCCCChhHHHHHHHhhccccHHHHhhcCCCcc
Q 044340 34 FPADEPQKFASVHKVFGASNVNKMLQELPEHQ 65 (155)
Q Consensus 34 FP~~~~~~F~~vhkvFG~snv~k~L~~lp~~~ 65 (155)
||+++.+--..+.+-=....|+..|+.||..+
T Consensus 6 yPa~k~~Lv~~A~~~gA~~~vl~~L~~lP~~~ 37 (44)
T PF11387_consen 6 YPADKDELVRHARRNGAPDDVLDALERLPDRE 37 (44)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHCCccC
Confidence 78775554444444444557899999999643
No 63
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=23.80 E-value=99 Score=28.20 Aligned_cols=58 Identities=31% Similarity=0.430 Sum_probs=39.1
Q ss_pred HHhhcCCCcchHHHHHH---HHHHHhcc----------------ccCCCcch---hHHHHHHHHHHHHHHHHHHHHHHHH
Q 044340 56 KMLQELPEHQRSDAVSS---MVYEANAR----------------VRDPVYGC---VGAISSLQQQIDSLQAQLALAQAEV 113 (155)
Q Consensus 56 k~L~~lp~~~R~~a~~S---LvYEA~aR----------------~rDPVyGc---vG~I~~Lq~qi~~lq~eLa~~~ael 113 (155)
++++.|...-|.|.++- -|-+|..| +-||--|. +|+|+.|+.+|-.+|++|+.+++..
T Consensus 167 ~lIN~Ls~rAr~dt~r~Ae~eV~~~eerv~kAs~~L~~yr~kngvfdp~~qaevq~~Lvs~Le~eL~~iqaqL~tvks~m 246 (372)
T COG3524 167 KLINQLSERARRDTVRFAEEEVQKAEERVKKASNDLTDYRIKNGVFDPKAQAEVQMSLVSKLEDELIVIQAQLDTVKSVM 246 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35556666666665543 23334333 34666664 7999999999999999999888766
No 64
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=23.67 E-value=1.5e+02 Score=21.08 Aligned_cols=26 Identities=15% Similarity=0.463 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044340 91 AISSLQQQIDSLQAQLALAQAEVVHM 116 (155)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~ael~~~ 116 (155)
.|..|+.++..++.++..+++++..+
T Consensus 78 ~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 78 ELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46788999999999999988888754
No 65
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=23.62 E-value=2e+02 Score=19.97 Aligned_cols=31 Identities=10% Similarity=0.172 Sum_probs=21.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044340 87 GCVGAISSLQQQIDSLQAQLALAQAEVVHMR 117 (155)
Q Consensus 87 GcvG~I~~Lq~qi~~lq~eLa~~~ael~~~~ 117 (155)
|.+..+...-..+..|+.++...+.+|.+.+
T Consensus 37 ~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 37 SAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555666777777777777777776654
No 66
>PRK15396 murein lipoprotein; Provisional
Probab=23.57 E-value=1.3e+02 Score=21.69 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044340 91 AISSLQQQIDSLQAQLALAQAEVVHMR 117 (155)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~ael~~~~ 117 (155)
-+-+|+.|++.|+.+...+++.....+
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~ 52 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMR 52 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777776665443
No 67
>PF00172 Zn_clus: Fungal Zn(2)-Cys(6) binuclear cluster domain; InterPro: IPR001138 The N-terminal region of a number of fungal transcriptional regulatory proteins contains a Cys-rich motif that is involved in zinc-dependent binding of DNA. The region forms a binuclear Zn cluster, in which two Zn atoms are bound by six Cys residues [, ]. A wide range of proteins are known to contain this domain. These include the proteins involved in arginine, proline, pyrimidine, quinate, maltose and galactose metabolism; amide and GABA catabolism; leucine biosynthesis, amongst others.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1AJY_A 1ZME_C 2VEQ_A 1CLD_A 1PYI_B 1D66_A 3COQ_A 1AW6_A 2ER8_A 2ERE_A ....
Probab=23.46 E-value=51 Score=19.99 Aligned_cols=14 Identities=21% Similarity=0.816 Sum_probs=10.2
Q ss_pred CChhhHHhhhCCCC
Q 044340 13 PCAACKLLRRRCAQ 26 (155)
Q Consensus 13 ~CaaCK~lRRrC~~ 26 (155)
+|..|+..+.+|..
T Consensus 2 aC~~Cr~rK~kCd~ 15 (40)
T PF00172_consen 2 ACDRCRRRKVKCDG 15 (40)
T ss_dssp SBHHHHHHTS--ST
T ss_pred cChHHHhhCcCcCC
Confidence 68899999999975
No 68
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=23.45 E-value=1.1e+02 Score=21.18 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 044340 91 AISSLQQQIDSLQAQLALAQAEVVHMRMRQV 121 (155)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~ael~~~~~~q~ 121 (155)
.|..|+.++..|+.|-...+.......+.|.
T Consensus 22 ~I~eL~~~n~~Le~EN~~Lk~~~~pe~l~q~ 52 (59)
T PF01166_consen 22 QIAELEERNSQLEEENNLLKQNASPEQLAQL 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSSSSTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3555555555555555555544443333333
No 69
>PRK14625 hypothetical protein; Provisional
Probab=23.39 E-value=1.2e+02 Score=23.02 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044340 92 ISSLQQQIDSLQAQLALAQAEVVHMRMR 119 (155)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~ael~~~~~~ 119 (155)
+..+.+|.+.+|.++..+|++|....+.
T Consensus 4 m~~mmkqaq~mQ~km~~~Q~el~~~~v~ 31 (109)
T PRK14625 4 LGGLMKQAQAMQQKLADAQARLAETTVE 31 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEE
Confidence 6678889999999999999999876654
No 70
>PRK14626 hypothetical protein; Provisional
Probab=23.21 E-value=1.3e+02 Score=22.62 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044340 90 GAISSLQQQIDSLQAQLALAQAEVVHMRMR 119 (155)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~ael~~~~~~ 119 (155)
|-+..+-.|.+.+|.++..+|++|....+.
T Consensus 5 gn~~~mmkqaq~mQ~km~~~qeeL~~~~v~ 34 (110)
T PRK14626 5 GNLAELMKQMQSIKENVEKAKEELKKEEIV 34 (110)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhccEEE
Confidence 447778889999999999999999876553
No 71
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=23.06 E-value=2.9e+02 Score=23.82 Aligned_cols=33 Identities=30% Similarity=0.428 Sum_probs=27.8
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044340 82 RDPVYGCVGAISSLQQQIDSLQAQLALAQAEVV 114 (155)
Q Consensus 82 rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~ael~ 114 (155)
.-|+.|.-.-|..|.++.+.+..+++..+++++
T Consensus 172 vYP~~ga~eki~~Lr~~y~~l~~~i~~lE~~Va 204 (259)
T PF08657_consen 172 VYPLPGAREKIAALRQRYNQLSNSIAYLEAEVA 204 (259)
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 349999999999999988888888888777775
No 72
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=22.79 E-value=2e+02 Score=19.62 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 044340 92 ISSLQQQIDSLQAQLALAQAEV 113 (155)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~ael 113 (155)
|.+|++.++.++.++..++.|-
T Consensus 19 vdqLs~dv~~lr~~v~~ak~EA 40 (56)
T PF04728_consen 19 VDQLSSDVNALRADVQAAKEEA 40 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555544
No 73
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=22.78 E-value=1.5e+02 Score=28.10 Aligned_cols=31 Identities=29% Similarity=0.307 Sum_probs=21.7
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044340 83 DPVYGCVGAISSLQQQIDSLQAQLALAQAEVV 114 (155)
Q Consensus 83 DPVyGcvG~I~~Lq~qi~~lq~eLa~~~ael~ 114 (155)
.|.....--+..+| ||+.|+.||+..|+++.
T Consensus 18 ~~~~a~~~~~~~~q-kie~L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 18 LPAAAMADDIDLLQ-KIEALKKQLEELKAQQD 48 (489)
T ss_pred cchhhhhhhhHHHH-HHHHHHHHHHHHHHhhc
Confidence 44444444555555 89999999998888875
No 74
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=22.68 E-value=1.1e+02 Score=29.12 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044340 89 VGAISSLQQQIDSLQAQLALAQAEVVHMR 117 (155)
Q Consensus 89 vG~I~~Lq~qi~~lq~eLa~~~ael~~~~ 117 (155)
.-.|..|+.||+.||.|....+++|+...
T Consensus 24 a~~i~~L~~ql~aLq~~v~eL~~~laa~~ 52 (514)
T PF11336_consen 24 ADQIKALQAQLQALQDQVNELRAKLAAKP 52 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34678899999999999999999986433
No 75
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=22.68 E-value=1.4e+02 Score=25.93 Aligned_cols=55 Identities=20% Similarity=0.341 Sum_probs=36.5
Q ss_pred HHHHhhcCCC-cchHHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHH----HHHHHHhh
Q 044340 54 VNKMLQELPE-HQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLAL----AQAEVVHM 116 (155)
Q Consensus 54 v~k~L~~lp~-~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~----~~ael~~~ 116 (155)
+.+||+-+|+ .+|+.+|+.|--+-+.|.+ .|.+||.+|...+.-|+. |+..|+.+
T Consensus 59 f~~llkla~eq~k~e~~m~~Lea~VEkrD~--------~IQqLqk~LK~aE~iLtta~fqA~qKLksi 118 (272)
T KOG4552|consen 59 FKTLLKLAPEQQKREQLMRTLEAHVEKRDE--------VIQQLQKNLKSAEVILTTACFQANQKLKSI 118 (272)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555565 5588999988655555543 599999999887666653 45555443
No 76
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=22.67 E-value=2e+02 Score=23.02 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044340 68 DAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVV 114 (155)
Q Consensus 68 ~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~ael~ 114 (155)
.++++-+-++--++.||. ..|.+.|..++.+|..++..++
T Consensus 8 ~~~~a~~~~~ld~~EDP~-------~~l~q~ird~e~~l~~a~~~~a 47 (221)
T PF04012_consen 8 TLVKANINELLDKAEDPE-------KMLEQAIRDMEEQLRKARQALA 47 (221)
T ss_pred HHHHHHHHHHHHhhcCHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666766 4455555555555555555544
No 77
>PF14623 Vint: Hint-domain
Probab=22.38 E-value=18 Score=29.50 Aligned_cols=38 Identities=34% Similarity=0.506 Sum_probs=27.6
Q ss_pred HHHhhccccHHHHhhcCCCcchHHHHHHHHHHHhccccCCCcch
Q 044340 45 VHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGC 88 (155)
Q Consensus 45 vhkvFG~snv~k~L~~lp~~~R~~a~~SLvYEA~aR~rDPVyGc 88 (155)
+|.+||...|.+-|..|+.-.-. +.+-..-.|||..|-
T Consensus 122 aH~fFG~~~V~~~L~~L~~~~~G------~v~~~g~~Rd~~Tgl 159 (162)
T PF14623_consen 122 AHAFFGDNAVVRDLASLPGFANG------VVECRGVKRDPETGL 159 (162)
T ss_pred eecccCcHHHHHHHHhCCCCCCC------EEEecceEECccccc
Confidence 69999999999999999874322 334445578887663
No 78
>PRK14623 hypothetical protein; Provisional
Probab=22.28 E-value=1.3e+02 Score=22.70 Aligned_cols=28 Identities=4% Similarity=0.157 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044340 92 ISSLQQQIDSLQAQLALAQAEVVHMRMR 119 (155)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~ael~~~~~~ 119 (155)
+..+..|.+.+|.++..+|++|....+.
T Consensus 3 ~~~~mkqaqkmQ~km~~~Qeel~~~~v~ 30 (106)
T PRK14623 3 MMGMMGKLKEAQQKVEATKKRLDTVLID 30 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEE
Confidence 6678889999999999999999876554
No 79
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=21.44 E-value=1.7e+02 Score=23.79 Aligned_cols=54 Identities=17% Similarity=0.387 Sum_probs=20.0
Q ss_pred ccHHHHhhcCCC--cchHHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044340 52 SNVNKMLQELPE--HQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVV 114 (155)
Q Consensus 52 snv~k~L~~lp~--~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~ael~ 114 (155)
..|...|++=|. .+.++++..|- +..|. -|.|+-.+.|++.|+++....+.+|.
T Consensus 9 ~~V~~yL~~~PdFf~~~~~ll~~l~------~ph~~---~~avSL~erQ~~~LR~~~~~L~~~l~ 64 (225)
T PF04340_consen 9 EDVAAYLRQHPDFFERHPELLAELR------LPHPS---GGAVSLVERQLERLRERNRQLEEQLE 64 (225)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHhCHHHHHHcC------CCCCC---CCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666564 56677776663 44554 26888888888888888888777774
No 80
>KOG4496 consensus Predicted coiled-coil protein [Function unknown]
Probab=20.77 E-value=3.3e+02 Score=22.55 Aligned_cols=65 Identities=15% Similarity=0.285 Sum_probs=42.1
Q ss_pred hhcCCC--cch-HHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 044340 58 LQELPE--HQR-SDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVVHMRMRQVS 122 (155)
Q Consensus 58 L~~lp~--~~R-~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~ael~~~~~~q~~ 122 (155)
|..+|+ +.| ...++.++.-----..+=-.-|--++-.+.+.|++....|....+.|+.+....-+
T Consensus 13 LnKVPaIdh~RTaaf~N~fimh~tefLN~F~n~cEd~Lad~elridq~d~kLnildaKLa~ipg~Dd~ 80 (194)
T KOG4496|consen 13 LNKVPAIDHHRTAAFFNCFIMHMTEFLNNFGNKCEDILADAELRIDQADRKLNILDAKLAGIPGEDDS 80 (194)
T ss_pred cccCCccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCcc
Confidence 344554 223 23445555443333333334466778889999999999999999999988776544
No 81
>PRK14624 hypothetical protein; Provisional
Probab=20.43 E-value=1.5e+02 Score=22.75 Aligned_cols=30 Identities=7% Similarity=0.251 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 044340 91 AISSLQQQIDSLQAQLALAQAEVVHMRMRQ 120 (155)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~ael~~~~~~q 120 (155)
-+..+..|.+..|.++..+|++|+...+.-
T Consensus 7 nm~~~mkqAq~mQ~km~~~QeeL~~~~v~g 36 (115)
T PRK14624 7 NMSEALSNMGNIREKMEEVKKRIASIRVVG 36 (115)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccEEEE
Confidence 367788899999999999999998776543
No 82
>PRK14622 hypothetical protein; Provisional
Probab=20.37 E-value=1.5e+02 Score=22.09 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044340 92 ISSLQQQIDSLQAQLALAQAEVVHMRMR 119 (155)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~ael~~~~~~ 119 (155)
+..|..|.+.+|.++..+|++|....+.
T Consensus 3 ~~~lmkqaq~mQ~~m~~~q~el~~~~v~ 30 (103)
T PRK14622 3 IQYLMRQAKKLEKAMADAKEKLAEIAVE 30 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEE
Confidence 5678889999999999999999876553
No 83
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=20.25 E-value=2.8e+02 Score=18.55 Aligned_cols=43 Identities=21% Similarity=0.185 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 044340 67 SDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQ 110 (155)
Q Consensus 67 ~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~ 110 (155)
.+...-|.-|=.+|..|+ .|+---|..|..+...|+++|...+
T Consensus 7 ~ELe~klkaerE~R~~d~-~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 7 EELERKLKAEREARSLDR-SAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHhHHhccCCc-hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666777778888887 4555666667766666666665544
Done!