Query 044340
Match_columns 155
No_of_seqs 130 out of 316
Neff 4.3
Searched_HMMs 29240
Date Tue Mar 26 00:05:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dzn_A Coiled-coil peptide CC- 83.8 1.7 5.9E-05 25.6 4.0 27 90-116 2-28 (33)
2 2er8_A Regulatory protein Leu3 76.5 4.9 0.00017 25.7 4.8 21 90-110 49-69 (72)
3 2ke4_A CDC42-interacting prote 56.4 33 0.0011 24.4 6.1 42 74-116 47-88 (98)
4 1zme_C Proline utilization tra 55.2 13 0.00045 23.4 3.5 25 90-114 44-68 (70)
5 3r4h_A Coiled coil helix CC-TE 53.7 22 0.00076 20.9 4.0 27 90-116 2-28 (34)
6 3ra3_B P2F; coiled coil domain 51.1 18 0.00062 20.5 3.2 25 92-116 2-26 (28)
7 4e61_A Protein BIM1; EB1-like 49.7 26 0.00088 25.7 4.7 29 87-115 1-29 (106)
8 1nkp_B MAX protein, MYC proto- 42.9 38 0.0013 22.6 4.4 29 89-117 46-74 (83)
9 1am9_A Srebp-1A, protein (ster 42.0 36 0.0012 23.0 4.3 27 89-115 49-75 (82)
10 2xdj_A Uncharacterized protein 37.1 41 0.0014 23.3 4.0 23 91-113 21-43 (83)
11 3myf_A Sensor protein; HPT, hi 36.3 1.1E+02 0.0038 21.5 6.8 65 40-112 51-115 (119)
12 1hlo_A Protein (transcription 35.5 39 0.0013 22.5 3.6 24 89-112 56-79 (80)
13 1a93_B MAX protein, coiled coi 33.9 67 0.0023 19.1 3.9 24 91-114 8-31 (34)
14 1avy_A Fibritin, gpwac M; bact 33.4 1.2E+02 0.004 20.9 5.8 35 92-126 17-51 (74)
15 2zvf_A Alanyl-tRNA synthetase; 33.2 1.3E+02 0.0045 21.8 6.5 45 73-117 15-59 (171)
16 1rtm_1 Mannose-binding protein 33.1 43 0.0015 23.5 3.6 21 92-112 6-26 (149)
17 2yy0_A C-MYC-binding protein; 33.1 54 0.0019 20.8 3.8 22 92-113 21-42 (53)
18 2qdq_A Talin-1; dimerisation d 32.1 49 0.0017 21.3 3.4 28 96-123 14-41 (50)
19 3nmd_A CGMP dependent protein 31.9 73 0.0025 21.8 4.5 28 90-117 40-67 (72)
20 2dgc_A Protein (GCN4); basic d 30.7 88 0.003 20.3 4.6 28 90-117 30-57 (63)
21 3pbf_A Pulmonary surfactant-as 30.0 40 0.0014 23.4 3.0 24 91-114 3-26 (148)
22 2l5g_B Putative uncharacterize 29.4 61 0.0021 20.2 3.4 25 95-119 7-31 (42)
23 1uuj_A Platelet-activating fac 29.3 24 0.00081 25.0 1.6 23 92-114 60-82 (88)
24 1dip_A Delta-sleep-inducing pe 29.0 85 0.0029 21.8 4.4 32 91-122 23-54 (78)
25 1dh3_A Transcription factor CR 27.8 98 0.0034 19.5 4.3 26 91-116 23-48 (55)
26 3efg_A Protein SLYX homolog; x 27.4 43 0.0015 22.8 2.7 23 92-114 37-59 (78)
27 2z5i_A TM, general control pro 25.9 1.1E+02 0.0039 19.2 4.3 26 91-116 13-38 (52)
28 1buu_A Protein (mannose-bindin 25.6 52 0.0018 23.8 3.0 22 90-111 23-44 (168)
29 2pbi_A Regulator of G-protein 25.6 38 0.0013 29.7 2.7 69 39-107 143-236 (424)
30 1ic2_A Tropomyosin alpha chain 25.4 86 0.003 20.9 3.9 46 65-114 20-65 (81)
31 3u1c_A Tropomyosin alpha-1 cha 25.4 81 0.0028 22.1 3.9 26 89-114 43-68 (101)
32 3azd_A Short alpha-tropomyosin 25.4 16 0.00055 21.8 0.2 24 92-115 6-29 (37)
33 2k48_A Nucleoprotein; viral pr 25.3 81 0.0028 23.2 4.0 22 90-111 82-103 (107)
34 3viq_B Mating-type switching p 25.1 46 0.0016 23.5 2.5 22 94-115 5-26 (85)
35 2ic6_A Nucleocapsid protein; h 24.4 93 0.0032 21.6 4.0 23 90-112 52-74 (78)
36 3trt_A Vimentin; cytoskeleton, 23.4 76 0.0026 20.7 3.3 19 91-109 57-75 (77)
37 2k48_A Nucleoprotein; viral pr 23.3 1.1E+02 0.0036 22.5 4.3 26 89-114 34-59 (107)
38 2wg5_A General control protein 23.3 91 0.0031 22.1 3.9 27 92-118 9-35 (109)
39 1jcd_A Major outer membrane li 22.9 1.1E+02 0.0037 19.5 3.8 13 95-107 16-28 (52)
40 2z2q_B Coat protein gamma; wil 22.2 71 0.0024 20.0 2.7 23 84-106 20-42 (44)
41 2ic9_A Nucleocapsid protein; h 21.7 1.1E+02 0.0037 22.1 4.0 22 90-111 52-73 (96)
42 1pyi_A Protein (pyrimidine pat 21.7 1.5E+02 0.0052 19.4 4.6 18 10-27 3-20 (96)
43 3i00_A HIP-I, huntingtin-inter 21.6 96 0.0033 22.8 3.8 22 91-112 41-62 (120)
44 1gk6_A Vimentin; intermediate 21.5 1.1E+02 0.0038 19.4 3.7 20 95-114 5-24 (59)
45 3mud_A DNA repair protein XRCC 21.3 1.3E+02 0.0043 23.8 4.6 42 63-115 119-160 (175)
46 1zxa_A CGMP-dependent protein 21.1 1.4E+02 0.0047 20.0 4.2 28 91-118 26-53 (67)
47 2wt7_A Proto-oncogene protein 20.9 1.4E+02 0.0049 19.0 4.2 22 92-113 25-46 (63)
48 3kqg_A Langerin, C-type lectin 20.8 1.4E+02 0.0048 21.4 4.6 25 90-114 16-40 (182)
49 1nov_D Nodamura virus coat pro 20.5 81 0.0028 19.8 2.7 23 84-106 20-42 (44)
50 3e98_A GAF domain of unknown f 20.2 78 0.0027 25.5 3.3 52 53-113 35-88 (252)
No 1
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=83.83 E-value=1.7 Score=25.61 Aligned_cols=27 Identities=30% Similarity=0.557 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044340 90 GAISSLQQQIDSLQAQLALAQAEVVHM 116 (155)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~ael~~~ 116 (155)
|.|-.|+++|..|+.|++..+-|++.+
T Consensus 2 geiaalkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999998754
No 2
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=76.51 E-value=4.9 Score=25.73 Aligned_cols=21 Identities=10% Similarity=0.183 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 044340 90 GAISSLQQQIDSLQAQLALAQ 110 (155)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~ 110 (155)
+.|..|+++|+.|+..|..+.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 567777777777777766443
No 3
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=56.39 E-value=33 Score=24.42 Aligned_cols=42 Identities=21% Similarity=0.273 Sum_probs=31.2
Q ss_pred HHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044340 74 VYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVVHM 116 (155)
Q Consensus 74 vYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~ael~~~ 116 (155)
+|+.+-=.-||-.= -+.|...-..|+.|++++...+..|+-.
T Consensus 47 vY~~nP~~GD~~s~-~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 47 VYEKTPQMGDPASL-EPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHCGGGCCGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67776666666543 7778888888888888888888777644
No 4
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=55.20 E-value=13 Score=23.37 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 044340 90 GAISSLQQQIDSLQAQLALAQAEVV 114 (155)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~ael~ 114 (155)
+.|..|+.+|..|+.+|+.+++.|.
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4588899999999999998887664
No 5
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=53.66 E-value=22 Score=20.91 Aligned_cols=27 Identities=19% Similarity=0.498 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044340 90 GAISSLQQQIDSLQAQLALAQAEVVHM 116 (155)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~ael~~~ 116 (155)
|.+-.+++++..++.||+..+-||+.+
T Consensus 2 gelaaikqelaaikkelaaikfelaai 28 (34)
T 3r4h_A 2 GELAAIKQELAAIKKELAAIKFELAAI 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677888999999999998888754
No 6
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=51.06 E-value=18 Score=20.49 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 044340 92 ISSLQQQIDSLQAQLALAQAEVVHM 116 (155)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~ael~~~ 116 (155)
|..|++....|+.|++...-||+.+
T Consensus 2 irrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 5678888899999999888888643
No 7
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=49.70 E-value=26 Score=25.72 Aligned_cols=29 Identities=17% Similarity=0.382 Sum_probs=20.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044340 87 GCVGAISSLQQQIDSLQAQLALAQAEVVH 115 (155)
Q Consensus 87 GcvG~I~~Lq~qi~~lq~eLa~~~ael~~ 115 (155)
|..|.+..++.++...+.+++..++++..
T Consensus 1 ~~~~s~~al~~eL~~~~~ei~~L~~ei~e 29 (106)
T 4e61_A 1 GPLGSLVAIQAELTKSQETIGSLNEEIEQ 29 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777766666643
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=42.90 E-value=38 Score=22.63 Aligned_cols=29 Identities=7% Similarity=0.075 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044340 89 VGAISSLQQQIDSLQAQLALAQAEVVHMR 117 (155)
Q Consensus 89 vG~I~~Lq~qi~~lq~eLa~~~ael~~~~ 117 (155)
+-.|..|+.+++.++.++...+.+...+.
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~ 74 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55788999888888888887777765443
No 9
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=42.03 E-value=36 Score=22.97 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044340 89 VGAISSLQQQIDSLQAQLALAQAEVVH 115 (155)
Q Consensus 89 vG~I~~Lq~qi~~lq~eLa~~~ael~~ 115 (155)
+-.|..|+.+++.|+.++...+.++..
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567899999999999999988888754
No 10
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=37.13 E-value=41 Score=23.27 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 044340 91 AISSLQQQIDSLQAQLALAQAEV 113 (155)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~ael 113 (155)
.+..|++||+.++.|++..+.++
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqi 43 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQI 43 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Confidence 45667777777777776655444
No 11
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=36.30 E-value=1.1e+02 Score=21.50 Aligned_cols=65 Identities=17% Similarity=0.249 Sum_probs=40.9
Q ss_pred hHHHHHHHhhccccHHHHhhcCCCcchHHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 044340 40 QKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAE 112 (155)
Q Consensus 40 ~~F~~vhkvFG~snv~k~L~~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~ae 112 (155)
+-+..+||+-|.+..+.. |. . ..-+...|...|..+|+-..-..+..|..+|..+..++....++
T Consensus 51 ~l~~~aHkLkGaa~~~Ga----~~-L---~~~~~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~~ 115 (119)
T 3myf_A 51 TMLSTIHKLHGASCYCGV----PT-T---QRLCQEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLSQ 115 (119)
T ss_dssp HHHHHHHHHHHHHTTTTC----HH-H---HHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCH----HH-H---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334458888888775442 11 1 12233457777888887777777888888887776666544443
No 12
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=35.55 E-value=39 Score=22.49 Aligned_cols=24 Identities=8% Similarity=0.101 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 044340 89 VGAISSLQQQIDSLQAQLALAQAE 112 (155)
Q Consensus 89 vG~I~~Lq~qi~~lq~eLa~~~ae 112 (155)
+-.|..|+++++.|+.++...+.+
T Consensus 56 i~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 56 TEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566888888888888887766543
No 13
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=33.94 E-value=67 Score=19.13 Aligned_cols=24 Identities=38% Similarity=0.374 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 044340 91 AISSLQQQIDSLQAQLALAQAEVV 114 (155)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~ael~ 114 (155)
-+...|+.|++|+.|-+..+.++.
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHHHHHHH
Confidence 356788889999988888888874
No 14
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=33.39 E-value=1.2e+02 Score=20.93 Aligned_cols=35 Identities=17% Similarity=0.363 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCC
Q 044340 92 ISSLQQQIDSLQAQLALAQAEVVHMRMRQVSPSSS 126 (155)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~ael~~~~~~q~~~~~~ 126 (155)
|..+..++..++..|..++.++.-+.+....+..|
T Consensus 17 iaa~~~ev~t~~~~l~~~e~~vqaL~~ag~ip~AP 51 (74)
T 1avy_A 17 IASVRQEVNTAKGNISSLQGDVQALQEAGYIPEAP 51 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred hhhhheeeccccchhhhhhhhhHHHHhcCCCCCCC
Confidence 56778888888889999999988887777776665
No 15
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=33.22 E-value=1.3e+02 Score=21.80 Aligned_cols=45 Identities=7% Similarity=0.104 Sum_probs=27.1
Q ss_pred HHHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044340 73 MVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVVHMR 117 (155)
Q Consensus 73 LvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~ael~~~~ 117 (155)
++.+...-..-|..--...|..|+.++..++.+++..+.+++...
T Consensus 15 ~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 15 LLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp HHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444434345566677777777777777777777766543
No 16
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=33.13 E-value=43 Score=23.54 Aligned_cols=21 Identities=19% Similarity=0.520 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 044340 92 ISSLQQQIDSLQAQLALAQAE 112 (155)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~ae 112 (155)
|..|+.+++.|+..|...+..
T Consensus 6 l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 6 LANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 445555555555555555543
No 17
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=33.09 E-value=54 Score=20.81 Aligned_cols=22 Identities=14% Similarity=0.215 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 044340 92 ISSLQQQIDSLQAQLALAQAEV 113 (155)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~ael 113 (155)
+-.|+.+++.|++++...++++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~ 42 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEEN 42 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555554444444
No 18
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=32.13 E-value=49 Score=21.28 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 044340 96 QQQIDSLQAQLALAQAEVVHMRMRQVSP 123 (155)
Q Consensus 96 q~qi~~lq~eLa~~~ael~~~~~~q~~~ 123 (155)
|..|=..+.||..|+..|+++|-.++..
T Consensus 14 qe~iLr~ErELEeAr~~La~iR~~kY~~ 41 (50)
T 2qdq_A 14 QEEMLRKERELEEARKKLAQIRQQQYKF 41 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445566789999999999999888765
No 19
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=31.86 E-value=73 Score=21.78 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044340 90 GAISSLQQQIDSLQAQLALAQAEVVHMR 117 (155)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~ael~~~~ 117 (155)
..|..|+.+|+....++...+.+|-.++
T Consensus 40 ~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 40 ALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4577788888888888888888886654
No 20
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=30.66 E-value=88 Score=20.27 Aligned_cols=28 Identities=14% Similarity=0.318 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044340 90 GAISSLQQQIDSLQAQLALAQAEVVHMR 117 (155)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~ael~~~~ 117 (155)
..+..|+.++..|+.+.....+++..++
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888888888888877654
No 21
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=29.96 E-value=40 Score=23.43 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 044340 91 AISSLQQQIDSLQAQLALAQAEVV 114 (155)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~ael~ 114 (155)
++-.|++++..|+.+|..++..|.
T Consensus 3 ~~e~l~~~~~~l~~~l~~~~~~~~ 26 (148)
T 3pbf_A 3 LDEELQTELYEIKHQILQTMGVLS 26 (148)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999998888884
No 22
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=29.41 E-value=61 Score=20.18 Aligned_cols=25 Identities=12% Similarity=0.472 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q 044340 95 LQQQIDSLQAQLALAQAEVVHMRMR 119 (155)
Q Consensus 95 Lq~qi~~lq~eLa~~~ael~~~~~~ 119 (155)
|-|+|+.+-.|++.++++|..++-.
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkK 31 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKK 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777777777777655543
No 23
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=29.28 E-value=24 Score=25.05 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 044340 92 ISSLQQQIDSLQAQLALAQAEVV 114 (155)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~ael~ 114 (155)
|-.||..|.+|+++++.++++|.
T Consensus 60 ViRLQKKImdLE~~~~~l~~el~ 82 (88)
T 1uuj_A 60 VIRLQKKVMELESKLNEAKEEFT 82 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999886
No 24
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=28.95 E-value=85 Score=21.85 Aligned_cols=32 Identities=13% Similarity=0.173 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 044340 91 AISSLQQQIDSLQAQLALAQAEVVHMRMRQVS 122 (155)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~ael~~~~~~q~~ 122 (155)
.|..|..++.+|+.|-...+.-.....+.|.+
T Consensus 23 ~I~EL~e~~~qLE~EN~~Lk~~aspEql~q~q 54 (78)
T 1dip_A 23 QIRELVEKNSQLERENTLLKTLASPEQLEKFQ 54 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 56777888888888877777766655555544
No 25
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=27.82 E-value=98 Score=19.50 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044340 91 AISSLQQQIDSLQAQLALAQAEVVHM 116 (155)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~ael~~~ 116 (155)
.|..|+.++..|+.+....+.++..+
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L 48 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKAL 48 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888888777777654
No 26
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=27.41 E-value=43 Score=22.81 Aligned_cols=23 Identities=0% Similarity=-0.113 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 044340 92 ISSLQQQIDSLQAQLALAQAEVV 114 (155)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~ael~ 114 (155)
|..-+++|+.|+.++......|.
T Consensus 37 v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 37 LADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555554444443
No 27
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=25.94 E-value=1.1e+02 Score=19.18 Aligned_cols=26 Identities=15% Similarity=0.330 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044340 91 AISSLQQQIDSLQAQLALAQAEVVHM 116 (155)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~ael~~~ 116 (155)
.+..|+..|+.|+.+|...+.+...+
T Consensus 13 sV~KLek~ID~LEdeL~~eKek~~~i 38 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYAQKLKYKAI 38 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 57889999999999998877665433
No 28
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=25.63 E-value=52 Score=23.84 Aligned_cols=22 Identities=18% Similarity=0.483 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 044340 90 GAISSLQQQIDSLQAQLALAQA 111 (155)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~a 111 (155)
..|..|+.+|..|+.+|...+.
T Consensus 23 ~~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 23 VKLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3455566666666666665555
No 29
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=25.57 E-value=38 Score=29.65 Aligned_cols=69 Identities=10% Similarity=0.118 Sum_probs=47.3
Q ss_pred hhHHHHHHHhhccccHHHHhhc---CCCcchHHHHHHHHHHHh----ccccCCCcchhHH------------------HH
Q 044340 39 PQKFASVHKVFGASNVNKMLQE---LPEHQRSDAVSSMVYEAN----ARVRDPVYGCVGA------------------IS 93 (155)
Q Consensus 39 ~~~F~~vhkvFG~snv~k~L~~---lp~~~R~~a~~SLvYEA~----aR~rDPVyGcvG~------------------I~ 93 (155)
.+.++.+++.|...+-.=++|. +.+.++.+-..-+|.+.+ +++.-|+.||+-. +.
T Consensus 143 ~e~~~~l~~~~~~~w~~i~~qa~~q~~~~k~r~k~~r~v~~~qe~a~w~vhrp~pg~~~~~e~~~~~~~~~~~~~~~~~~ 222 (424)
T 2pbi_A 143 KENYDFLNKKINYKWDFVIMQAKEQYRTGKERNKADRYALDCQEKAYWLVHRSPPGMNNVLDYGLDRVTNPNEVKKQTVT 222 (424)
T ss_dssp HHHHHHHHHHTGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHSCCTTSCCTTCCCSCBSSCTTCCCCCCHH
T ss_pred HHHHhhhhhhhcCchHHHHHHHHHHHhhhhccchhhhhhhhhhhhhhhhhhCCCCCCccccccccccccCccccccccHH
Confidence 3566677887776665555553 444455555666666555 7889999998743 46
Q ss_pred HHHHHHHHHHHHHH
Q 044340 94 SLQQQIDSLQAQLA 107 (155)
Q Consensus 94 ~Lq~qi~~lq~eLa 107 (155)
.++.+|++|+.++.
T Consensus 223 ~~r~~veqLk~~l~ 236 (424)
T 2pbi_A 223 AVRKEIMYYQQALM 236 (424)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 78888888888874
No 30
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=25.39 E-value=86 Score=20.92 Aligned_cols=46 Identities=13% Similarity=0.199 Sum_probs=27.6
Q ss_pred chHHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044340 65 QRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVV 114 (155)
Q Consensus 65 ~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~ael~ 114 (155)
.|.+....-+-+++.|.. -.=.-|..|+..|..++.+|..++..|.
T Consensus 20 ~~~~~~e~~l~~~e~~~~----~~E~ev~~L~kKiq~lE~eld~~ee~l~ 65 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSK----QLEDELVALQKKLKGTEDELDKYSESLK 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555554431 1235577788888888888877777664
No 31
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=25.37 E-value=81 Score=22.07 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044340 89 VGAISSLQQQIDSLQAQLALAQAEVV 114 (155)
Q Consensus 89 vG~I~~Lq~qi~~lq~eLa~~~ael~ 114 (155)
=.-|..|+..|..++.+|..++..|.
T Consensus 43 E~Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 43 EDDIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888887777765
No 32
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=25.37 E-value=16 Score=21.76 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 044340 92 ISSLQQQIDSLQAQLALAQAEVVH 115 (155)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~ael~~ 115 (155)
|..++..|..++.++..++.++..
T Consensus 6 i~avKkKiq~lq~q~d~aee~~~~ 29 (37)
T 3azd_A 6 LEAVRRKIRSLQEQNYHLENEVAR 29 (37)
T ss_dssp CHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777666666653
No 33
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=25.29 E-value=81 Score=23.18 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 044340 90 GAISSLQQQIDSLQAQLALAQA 111 (155)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~a 111 (155)
++|+.||..|.+|+.+|+.+.+
T Consensus 82 ~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 82 AAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888876655
No 34
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=25.13 E-value=46 Score=23.47 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 044340 94 SLQQQIDSLQAQLALAQAEVVH 115 (155)
Q Consensus 94 ~Lq~qi~~lq~eLa~~~ael~~ 115 (155)
+|+..|..|+++++..+.+|..
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~ 26 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQD 26 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 35
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=24.35 E-value=93 Score=21.59 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 044340 90 GAISSLQQQIDSLQAQLALAQAE 112 (155)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~ae 112 (155)
+.|+.|+..|.+|+.+|+.+.++
T Consensus 52 ~~V~~lq~Ki~elkrqlAd~va~ 74 (78)
T 2ic6_A 52 AAVSALETKLGELKRELADLIAA 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
No 36
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=23.45 E-value=76 Score=20.66 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 044340 91 AISSLQQQIDSLQAQLALA 109 (155)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~ 109 (155)
.|..|..+|+.|+.||..+
T Consensus 57 Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 57 ESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3556666666666666544
No 37
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=23.26 E-value=1.1e+02 Score=22.54 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044340 89 VGAISSLQQQIDSLQAQLALAQAEVV 114 (155)
Q Consensus 89 vG~I~~Lq~qi~~lq~eLa~~~ael~ 114 (155)
.+-|-.||.+|...+.||..|+..|.
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLk 59 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLK 59 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999999999999886
No 38
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=23.26 E-value=91 Score=22.07 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 044340 92 ISSLQQQIDSLQAQLALAQAEVVHMRM 118 (155)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~ael~~~~~ 118 (155)
..+|+.+++.++.++...+.+|..++.
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 357889999999999999999986644
No 39
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=22.91 E-value=1.1e+02 Score=19.54 Aligned_cols=13 Identities=8% Similarity=0.079 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 044340 95 LQQQIDSLQAQLA 107 (155)
Q Consensus 95 Lq~qi~~lq~eLa 107 (155)
|..++..|+.+..
T Consensus 16 L~~kVdqLssdV~ 28 (52)
T 1jcd_A 16 ANAKADQASNDAN 28 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 40
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=22.21 E-value=71 Score=20.03 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=18.5
Q ss_pred CCcchhHHHHHHHHHHHHHHHHH
Q 044340 84 PVYGCVGAISSLQQQIDSLQAQL 106 (155)
Q Consensus 84 PVyGcvG~I~~Lq~qi~~lq~eL 106 (155)
-|.|.||+|...-++|-.|-.+|
T Consensus 20 ~iPGPVG~~asGi~~l~~l~~~l 42 (44)
T 2z2q_B 20 NIPGPIGVAASGISGLSALFEGF 42 (44)
T ss_pred cCCCchhHHHHhHHHHHHHHHHh
Confidence 48899999999999887665544
No 41
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=21.67 E-value=1.1e+02 Score=22.09 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 044340 90 GAISSLQQQIDSLQAQLALAQA 111 (155)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~a 111 (155)
+.|+.|+..|.+|+.+|+.+.+
T Consensus 52 ~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 52 AAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 6788888888888888887766
No 42
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=21.66 E-value=1.5e+02 Score=19.35 Aligned_cols=18 Identities=28% Similarity=0.868 Sum_probs=13.9
Q ss_pred CCCCChhhHHhhhCCCCC
Q 044340 10 ALSPCAACKLLRRRCAQD 27 (155)
Q Consensus 10 ~~~~CaaCK~lRRrC~~~ 27 (155)
...+|..||..+-||...
T Consensus 3 ~~~aC~~Cr~rK~kCd~~ 20 (96)
T 1pyi_A 3 SRTACKRCRLKKIKCDQE 20 (96)
T ss_dssp CCCCCHHHHHHTCCCCCC
T ss_pred ccchhHHHhccCcCcCCc
Confidence 346799999988899743
No 43
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=21.56 E-value=96 Score=22.76 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 044340 91 AISSLQQQIDSLQAQLALAQAE 112 (155)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~ae 112 (155)
+|..|+.+|..|+++|+..+..
T Consensus 41 ~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 41 VVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 44
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=21.51 E-value=1.1e+02 Score=19.43 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 044340 95 LQQQIDSLQAQLALAQAEVV 114 (155)
Q Consensus 95 Lq~qi~~lq~eLa~~~ael~ 114 (155)
++..|..++++|..+++++.
T Consensus 5 ~q~~i~~le~el~~~r~e~~ 24 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENEVA 24 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555443
No 45
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=21.28 E-value=1.3e+02 Score=23.78 Aligned_cols=42 Identities=14% Similarity=0.311 Sum_probs=33.4
Q ss_pred CcchHHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044340 63 EHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVVH 115 (155)
Q Consensus 63 ~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~ael~~ 115 (155)
.+.|.++++-|+=.| ...|..||.+|+.|+.+|...+.+-..
T Consensus 119 a~~paE~ireli~~A-----------ertV~kLqkeiD~LEDeL~~eKek~k~ 160 (175)
T 3mud_A 119 VENPAEVIRELICYC-----------LDTTAKNEKSIDDLEEKVAHAKEENLN 160 (175)
T ss_dssp CSCHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888887655 567899999999999999888776543
No 46
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=21.10 E-value=1.4e+02 Score=20.03 Aligned_cols=28 Identities=7% Similarity=0.210 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 044340 91 AISSLQQQIDSLQAQLALAQAEVVHMRM 118 (155)
Q Consensus 91 ~I~~Lq~qi~~lq~eLa~~~ael~~~~~ 118 (155)
.|..|+..++.-..++...+.+|..++.
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777765543
No 47
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=20.93 E-value=1.4e+02 Score=18.98 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 044340 92 ISSLQQQIDSLQAQLALAQAEV 113 (155)
Q Consensus 92 I~~Lq~qi~~lq~eLa~~~ael 113 (155)
|..|+.++..|+.+-...+.+|
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei 46 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEI 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333333
No 48
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=20.84 E-value=1.4e+02 Score=21.38 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 044340 90 GAISSLQQQIDSLQAQLALAQAEVV 114 (155)
Q Consensus 90 G~I~~Lq~qi~~lq~eLa~~~ael~ 114 (155)
..+..|+.+|+.|+.+|...+..|.
T Consensus 16 ~~~~~l~~~~~~l~~~l~~~~~~l~ 40 (182)
T 3kqg_A 16 EKASALNTKIRALQGSLENMSKLLK 40 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777776666554
No 49
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=20.53 E-value=81 Score=19.77 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=18.3
Q ss_pred CCcchhHHHHHHHHHHHHHHHHH
Q 044340 84 PVYGCVGAISSLQQQIDSLQAQL 106 (155)
Q Consensus 84 PVyGcvG~I~~Lq~qi~~lq~eL 106 (155)
-|.|.+|+|...-++|..|-.+|
T Consensus 20 ~iPGPVG~~asGi~gl~~l~~~~ 42 (44)
T 1nov_D 20 TIPGPVGVAATGIKGIIETIGSL 42 (44)
T ss_pred cCCCchhHHHHhHHHHHHHHHHh
Confidence 48899999999999887665443
No 50
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=20.22 E-value=78 Score=25.47 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=15.8
Q ss_pred cHHHHhhcCCC--cchHHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 044340 53 NVNKMLQELPE--HQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEV 113 (155)
Q Consensus 53 nv~k~L~~lp~--~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~ael 113 (155)
.|...|++=|. .++++++.+| ++-.|.. |.|+-.++|++.+++++...+.+|
T Consensus 35 ~V~~yL~~~PdFf~~~~~Ll~~L------~lph~~~---~aVSL~erQ~~~LR~r~~~Le~~L 88 (252)
T 3e98_A 35 QVAAYLSQHPEFFVEHDELIPEL------RIPHQPG---DAVSLVERQVRLLRERNIEMRHRL 88 (252)
T ss_dssp -----------------------------------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHhhCHHHHHhC------CCCCCCC---CcccHHHHHHHHHHHHHHHHHHHH
Confidence 45556666554 5566666555 5666764 667777777777777776666666
Done!