Query 044340
Match_columns 155
No_of_seqs 130 out of 316
Neff 4.3
Searched_HMMs 13730
Date Tue Mar 26 00:05:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044340.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044340hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hcia4 a.7.1.1 (A:633-746) al 65.3 4.5 0.00033 26.1 4.6 49 68-116 15-63 (114)
2 d1uklc_ a.38.1.1 (C:) SREBP-2 50.0 11 0.0008 22.6 4.1 26 89-114 32-57 (61)
3 d1am9a_ a.38.1.1 (A:) SREBP-1a 41.5 23 0.0017 22.0 4.8 30 88-117 48-77 (80)
4 d1nkpa_ a.38.1.1 (A:) Myc prot 34.4 41 0.003 20.9 5.3 27 89-115 51-77 (88)
5 d1zmec1 g.38.1.1 (C:31-66) PUT 30.0 13 0.00095 20.4 1.8 15 12-26 2-16 (36)
6 d3coqa1 g.38.1.1 (A:8-48) Gal4 29.4 13 0.00092 20.7 1.7 15 12-26 2-16 (41)
7 d2otaa1 a.284.1.1 (A:7-68) Hyp 27.7 17 0.0012 22.8 2.3 20 54-73 35-54 (62)
8 d1pyia1 g.38.1.1 (A:30-71) PPR 27.4 17 0.0012 20.4 2.0 17 11-27 2-18 (42)
9 d1urfa_ a.2.6.1 (A:) Protein k 26.1 70 0.0051 20.3 5.3 49 48-112 24-72 (81)
10 d3alca_ g.38.1.1 (A:) Ethanol 24.8 19 0.0014 21.6 2.1 19 7-25 7-25 (65)
11 d1clda_ g.38.1.1 (A:) CD2-Lac9 22.5 16 0.0012 19.4 1.2 16 12-27 1-16 (33)
No 1
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=65.29 E-value=4.5 Score=26.13 Aligned_cols=49 Identities=8% Similarity=0.188 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044340 68 DAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAEVVHM 116 (155)
Q Consensus 68 ~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~ael~~~ 116 (155)
+-+.+-+-|+..-+.+|++|-.+.|..+..+.+.++.+|..-+..+..+
T Consensus 15 ~~~~~Wi~e~~~~l~~~~~~~~~~ve~~l~~h~~~e~el~~~~~~i~~l 63 (114)
T d1hcia4 15 NAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKL 63 (114)
T ss_dssp HHHHHHHHHHHHHHHSCSCTTTTSTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667888888889999999999999999999999999988888543
No 2
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.04 E-value=11 Score=22.62 Aligned_cols=26 Identities=19% Similarity=0.121 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044340 89 VGAISSLQQQIDSLQAQLALAQAEVV 114 (155)
Q Consensus 89 vG~I~~Lq~qi~~lq~eLa~~~ael~ 114 (155)
+-.|..|+.|+..|++|+...+.+..
T Consensus 32 i~YI~~Lq~~~~~L~~e~~~L~~~~~ 57 (61)
T d1uklc_ 32 IDYIKYLQQVNHKLRQENMVLKLANQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999988887764
No 3
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.54 E-value=23 Score=22.00 Aligned_cols=30 Identities=17% Similarity=0.154 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044340 88 CVGAISSLQQQIDSLQAQLALAQAEVVHMR 117 (155)
Q Consensus 88 cvG~I~~Lq~qi~~lq~eLa~~~ael~~~~ 117 (155)
.+-.|..|+.+++.|+.+....+.++...+
T Consensus 48 a~~yI~~L~~~~~~L~~e~~~lk~~~~~~~ 77 (80)
T d1am9a_ 48 AIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 456788999999999999988888876543
No 4
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.44 E-value=41 Score=20.94 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044340 89 VGAISSLQQQIDSLQAQLALAQAEVVH 115 (155)
Q Consensus 89 vG~I~~Lq~qi~~lq~eLa~~~ael~~ 115 (155)
+-.|..|+.++..++.++...+.+...
T Consensus 51 ~~yI~~L~~~~~~l~~~~~~l~~~~~~ 77 (88)
T d1nkpa_ 51 TAYILSVQAEEQKLISEEDLLRKRREQ 77 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455778888888887777766665543
No 5
>d1zmec1 g.38.1.1 (C:31-66) PUT3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=30.02 E-value=13 Score=20.43 Aligned_cols=15 Identities=20% Similarity=0.718 Sum_probs=10.9
Q ss_pred CCChhhHHhhhCCCC
Q 044340 12 SPCAACKLLRRRCAQ 26 (155)
Q Consensus 12 ~~CaaCK~lRRrC~~ 26 (155)
.+|-.||..+.||..
T Consensus 2 ~aC~~Cr~rK~kCd~ 16 (36)
T d1zmec1 2 VACLSCRKRHIKCPG 16 (36)
T ss_dssp CCCHHHHHHTCCCCC
T ss_pred ccHHHHHHhCCcCCC
Confidence 467778888877754
No 6
>d3coqa1 g.38.1.1 (A:8-48) Gal4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.44 E-value=13 Score=20.66 Aligned_cols=15 Identities=27% Similarity=0.983 Sum_probs=12.3
Q ss_pred CCChhhHHhhhCCCC
Q 044340 12 SPCAACKLLRRRCAQ 26 (155)
Q Consensus 12 ~~CaaCK~lRRrC~~ 26 (155)
.+|..||..+.+|..
T Consensus 2 ~AC~~Cr~rK~KCd~ 16 (41)
T d3coqa1 2 QACDICRLKKLKCSK 16 (41)
T ss_dssp CCCHHHHHHTCCCCC
T ss_pred cchHHHHHhCcccCC
Confidence 478899999999964
No 7
>d2otaa1 a.284.1.1 (A:7-68) Hypothetical protein CPS2611 {Colwellia psychrerythraea [TaxId: 28229]}
Probab=27.71 E-value=17 Score=22.81 Aligned_cols=20 Identities=25% Similarity=0.596 Sum_probs=16.3
Q ss_pred HHHHhhcCCCcchHHHHHHH
Q 044340 54 VNKMLQELPEHQRSDAVSSM 73 (155)
Q Consensus 54 v~k~L~~lp~~~R~~a~~SL 73 (155)
++++|..+|+.+|...+++.
T Consensus 35 vTnii~~V~~~qR~~iAe~F 54 (62)
T d2otaa1 35 VTNIIAQVPESKRVAVVDNF 54 (62)
T ss_dssp HHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 46677889999999888765
No 8
>d1pyia1 g.38.1.1 (A:30-71) PPR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.41 E-value=17 Score=20.36 Aligned_cols=17 Identities=29% Similarity=0.897 Sum_probs=12.9
Q ss_pred CCCChhhHHhhhCCCCC
Q 044340 11 LSPCAACKLLRRRCAQD 27 (155)
Q Consensus 11 ~~~CaaCK~lRRrC~~~ 27 (155)
..+|..||..+.+|...
T Consensus 2 r~aC~~Cr~rK~kCd~~ 18 (42)
T d1pyia1 2 RTACKRCRLKKIKCDQE 18 (42)
T ss_dssp CCCCHHHHHHTCCCCCC
T ss_pred cHHHHHHHHhCcCCCCc
Confidence 35788888888888653
No 9
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.10 E-value=70 Score=20.33 Aligned_cols=49 Identities=20% Similarity=0.192 Sum_probs=30.2
Q ss_pred hhccccHHHHhhcCCCcchHHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 044340 48 VFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQAQLALAQAE 112 (155)
Q Consensus 48 vFG~snv~k~L~~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I~~Lq~qi~~lq~eLa~~~ae 112 (155)
.=|+.||+++++.-...+|... -||+. .+..-.+.|+.|+.+|...+..
T Consensus 24 keGaEnm~k~~~~~~~~DrK~l-----~eaq~-----------~l~eS~~Ki~lLr~~L~~~~q~ 72 (81)
T d1urfa_ 24 KQGAENMIQTYSNGSTKDRKLL-----LTAQQ-----------MLQDSKTKIDIIRMQLRRALQA 72 (81)
T ss_dssp HHHHHHHHHHHHHSSSCCHHHH-----HHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCcccHHHH-----HHHHH-----------HHHHHHHHHHHHHHHHHHHHHh
Confidence 3499999999998665555322 23332 3334456677777777665554
No 10
>d3alca_ g.38.1.1 (A:) Ethanol regulon transcriptional activator ALCR DNA-binding domain {Emericella nidulans, also known as Aspergillus nidulans [TaxId: 162425]}
Probab=24.85 E-value=19 Score=21.58 Aligned_cols=19 Identities=26% Similarity=0.749 Sum_probs=15.7
Q ss_pred CCCCCCCChhhHHhhhCCC
Q 044340 7 KQGALSPCAACKLLRRRCA 25 (155)
Q Consensus 7 ~~g~~~~CaaCK~lRRrC~ 25 (155)
+.....+|-.||..+.+|.
T Consensus 7 r~R~~~AC~~CR~rK~kCd 25 (65)
T d3alca_ 7 RRRQNHSCDPCRKGKRRCD 25 (65)
T ss_dssp SSSSCCSCHHHHHTTCCCS
T ss_pred CcCcCHhHHHHHhccccCC
Confidence 3456779999999999995
No 11
>d1clda_ g.38.1.1 (A:) CD2-Lac9 {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}
Probab=22.46 E-value=16 Score=19.42 Aligned_cols=16 Identities=25% Similarity=0.875 Sum_probs=13.0
Q ss_pred CCChhhHHhhhCCCCC
Q 044340 12 SPCAACKLLRRRCAQD 27 (155)
Q Consensus 12 ~~CaaCK~lRRrC~~~ 27 (155)
.+|..|+..+.+|...
T Consensus 1 rAC~~Cr~rK~kCd~~ 16 (33)
T d1clda_ 1 QACDACRKKKWKCSKT 16 (33)
T ss_dssp CCCHHHHHSCCCCCCC
T ss_pred CChHHHHHhcCccCcc
Confidence 3799999999999753
Done!