BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044343
(201 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O80536|PIF3_ARATH Transcription factor PIF3 OS=Arabidopsis thaliana GN=PIF3 PE=1 SV=1
Length = 524
Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 78/123 (63%), Gaps = 8/123 (6%)
Query: 32 SQLPTSWHQTSHSLDTDVDDFSDATEISEGMERKPDNRP-------KRTHSAEVHNQSER 84
S+ P+ + HS D+D S+ E G RK + P KR+ SAEVHN SER
Sbjct: 295 SESPSLSLKRKHSNIQDIDCHSEDVEEESGDGRK-EAGPSRTGLGSKRSRSAEVHNLSER 353
Query: 85 RRRDRINKRLKSLKELVPNCNKSDRASVLDDAVNYVKALRHQLEMMSAQGGAIFQSPFMS 144
RRRDRIN+++++L+EL+PNCNK D+AS+LD+A+ Y+K+L+ Q+++MS G M
Sbjct: 354 RRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQVQIMSMASGYYLPPAVMF 413
Query: 145 PSG 147
P G
Sbjct: 414 PPG 416
>sp|Q8GZM7|PIF1_ARATH Transcription factor PIF1 OS=Arabidopsis thaliana GN=PIF1 PE=1 SV=1
Length = 478
Score = 93.6 bits (231), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 56/61 (91%)
Query: 71 KRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCNKSDRASVLDDAVNYVKALRHQLEMM 130
KR+ +AEVHN SER+RRDRIN+R+K+L+EL+P CNKSD+AS+LD+A+ Y+K+L+ Q++MM
Sbjct: 281 KRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKSDKASMLDEAIEYMKSLQLQIQMM 340
Query: 131 S 131
S
Sbjct: 341 S 341
>sp|Q8L5W8|PIL1_ARATH Transcription factor PIL1 OS=Arabidopsis thaliana GN=PIL1 PE=1 SV=1
Length = 416
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 64/101 (63%), Gaps = 3/101 (2%)
Query: 50 DDFSDATEISEGMERKPDNRPKRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCNKSDR 109
D+ DA RKP KR S EVH ER+RRD NK++++L++L+PNC K D+
Sbjct: 207 DESDDAKTQVHARTRKPVT--KRKRSTEVHKLYERKRRDEFNKKMRALQDLLPNCYKDDK 264
Query: 110 ASVLDDAVNYVKALRHQLEMMSAQGGAIFQSPFMSPSGHQS 150
AS+LD+A+ Y++ L+ Q++MMS G + + P M P GH S
Sbjct: 265 ASLLDEAIKYMRTLQLQVQMMS-MGNGLIRPPTMLPMGHYS 304
>sp|Q9SVU7|BH056_ARATH Putative transcription factor bHLH056 OS=Arabidopsis thaliana
GN=BHLH56 PE=4 SV=2
Length = 445
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 69/108 (63%), Gaps = 8/108 (7%)
Query: 71 KRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCNKSDRASVLDDAVNYVKALRHQLE-M 129
KR+ +AE+HN +ERRRR++IN+++K+L++L+P CNKS + S LDDA+ YVK+L+ Q++ M
Sbjct: 252 KRSRTAEMHNLAERRRREKINEKMKTLQQLIPRCNKSTKVSTLDDAIEYVKSLQSQIQGM 311
Query: 130 MSAQGGAIFQSPFMSPSGHQSTEVPQISPNVPIS----PKLGMGSGIG 173
MS A FM H + ++ + P +P P +G+G
Sbjct: 312 MSPMMNAGNTQQFMP---HMAMDMNRPPPFIPFPGTSFPMPAQMAGVG 356
>sp|Q8GZ38|UNE10_ARATH Transcription factor UNE10 OS=Arabidopsis thaliana GN=UNE10 PE=2
SV=1
Length = 399
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 53/61 (86%)
Query: 71 KRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCNKSDRASVLDDAVNYVKALRHQLEMM 130
KR+ +A +HNQSER+RRD+IN+R+K+L++LVPN +K+D+AS+LD+ + Y+K L+ Q+ MM
Sbjct: 210 KRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVSMM 269
Query: 131 S 131
S
Sbjct: 270 S 270
>sp|Q9SVU6|BH023_ARATH Transcription factor bHLH23 OS=Arabidopsis thaliana GN=BHLH23 PE=2
SV=1
Length = 413
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 65/110 (59%), Gaps = 9/110 (8%)
Query: 71 KRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCNKSDRASVLDDAVNYVKALRHQLEMM 130
KR+ +A +H SERRRR +IN+ +K+L+EL+P C K+DR+S+LDD + YVK+L+ Q++M
Sbjct: 274 KRSRAAIMHKLSERRRRQKINEMMKALQELLPRCTKTDRSSMLDDVIEYVKSLQSQIQMF 333
Query: 131 SAQGGAIFQSPFMSPSGHQSTEVPQISPN-------VPISPKLGMGSGIG 173
S G + P M Q +P ++ +P + M G+G
Sbjct: 334 SM--GHVMIPPMMYAGNIQQQYMPHMAMGMNRPPAFIPFPRQAHMAEGVG 381
>sp|Q9FUA4|SPT_ARATH Transcription factor SPATULA OS=Arabidopsis thaliana GN=SPT PE=1
SV=1
Length = 373
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 59/84 (70%)
Query: 75 SAEVHNQSERRRRDRINKRLKSLKELVPNCNKSDRASVLDDAVNYVKALRHQLEMMSAQG 134
+AEVHN SE+RRR RIN+++K+L+ L+PN NK+D+AS+LD+A+ Y+K L+ Q++M++ +
Sbjct: 198 AAEVHNLSEKRRRSRINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLTMRN 257
Query: 135 GAIFQSPFMSPSGHQSTEVPQISP 158
G + + ++ QI P
Sbjct: 258 GINLHPLCLPGTTLHPLQLSQIRP 281
>sp|Q7XHI7|BH127_ARATH Transcription factor bHLH127 OS=Arabidopsis thaliana GN=BHLH127
PE=2 SV=1
Length = 307
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Query: 71 KRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCNKSDRASVLDDAVNYVKALRHQL-EM 129
KR+ +AE+HN +ERRRR++IN+R+K+L++L+P CNKS + S+L+D + YVK+L Q+ +
Sbjct: 147 KRSRAAEMHNLAERRRREKINERMKTLQQLIPRCNKSTKVSMLEDVIEYVKSLEMQINQF 206
Query: 130 MSAQGGAIFQSPFMSPSGHQS 150
M + Q P P Q+
Sbjct: 207 MPHMAMGMNQPPAYIPFPSQA 227
>sp|Q8S3D5|BH069_ARATH Transcription factor bHLH69 OS=Arabidopsis thaliana GN=BHLH69 PE=2
SV=2
Length = 310
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 57/76 (75%), Gaps = 2/76 (2%)
Query: 63 ERKPDNRPKRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCNKSDRASVLDDAVNYVKA 122
+ KP R +R + + H+ +ER RR+RI +R+KSL+ELVPN NK+D+AS+LD+ ++YVK
Sbjct: 125 QTKPKVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNKTDKASMLDEIIDYVKF 184
Query: 123 LRHQLEM--MSAQGGA 136
L+ Q+++ MS GGA
Sbjct: 185 LQLQVKVLSMSRLGGA 200
>sp|Q84LH8|PIF5_ARATH Transcription factor PIF5 OS=Arabidopsis thaliana GN=PIF5 PE=1 SV=1
Length = 444
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 68/92 (73%), Gaps = 5/92 (5%)
Query: 71 KRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCNKSDRASVLDDAVNYVKALRHQLEMM 130
+R+ +AEVHN SERRRRDRIN+R+K+L+EL+P+C+++D+AS+LD+A++Y+K+L+ QL++M
Sbjct: 253 RRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRTDKASILDEAIDYLKSLQMQLQVM 312
Query: 131 SAQGG-----AIFQSPFMSPSGHQSTEVPQIS 157
G A SP M P S + Q++
Sbjct: 313 WMGSGMAAAAAAAASPMMFPGVQSSPYINQMA 344
>sp|Q9LSQ3|BH082_ARATH Transcription factor bHLH82 OS=Arabidopsis thaliana GN=BHLH82 PE=2
SV=1
Length = 297
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 57/77 (74%), Gaps = 2/77 (2%)
Query: 62 MERKPDNRPKRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCNKSDRASVLDDAVNYVK 121
+ +KP R +R + + H+ +ER RR+RI +R+KSL+ELVPN NK+D+AS+LD+ + YV+
Sbjct: 93 VRQKPRVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNKTDKASMLDEIIEYVR 152
Query: 122 ALRHQLEM--MSAQGGA 136
L+ Q+++ MS GGA
Sbjct: 153 FLQLQVKVLSMSRLGGA 169
>sp|Q9FHA2|ALC_ARATH Transcription factor ALC OS=Arabidopsis thaliana GN=ALC PE=2 SV=1
Length = 210
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 58/91 (63%), Gaps = 10/91 (10%)
Query: 68 NRPKRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCNKSDRASVLDDAVNYVKALRHQL 127
N KR A+ HN SE++RR +IN+++K+L++L+PN NK+D+AS+LD+A+ Y+K L+ Q+
Sbjct: 87 NSLKRNIDAQFHNLSEKKRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEYLKQLQLQV 146
Query: 128 EMMSAQGGAIFQSPFMSPSGHQSTEVPQISP 158
+ ++ G G +PQ+ P
Sbjct: 147 QTLAVMNGL----------GLNPMRLPQVPP 167
>sp|Q8W2F3|PIF4_ARATH Transcription factor PIF4 OS=Arabidopsis thaliana GN=PIF4 PE=1 SV=1
Length = 430
Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 57/60 (95%)
Query: 71 KRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCNKSDRASVLDDAVNYVKALRHQLEMM 130
+R+ +AEVHN SERRRRDRIN+R+K+L+EL+P+C+K+D+AS+LD+A++Y+K+L+ QL++M
Sbjct: 254 RRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDKASILDEAIDYLKSLQLQLQVM 313
>sp|Q9ZUG9|BH066_ARATH Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2
SV=1
Length = 350
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 59/81 (72%), Gaps = 2/81 (2%)
Query: 69 RPKRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCNKSDRASVLDDAVNYVKALRHQLE 128
R +R + + H+ +ER RR+RI +R+K+L+ELVPN NK+D+AS+LD+ ++YVK L+ Q++
Sbjct: 139 RARRGQATDPHSIAERLRRERIAERMKALQELVPNGNKTDKASMLDEIIDYVKFLQLQVK 198
Query: 129 M--MSAQGGAIFQSPFMSPSG 147
+ MS GGA S +S +G
Sbjct: 199 VLSMSRLGGAASVSSQISEAG 219
>sp|Q8L5W7|PIF6_ARATH Transcription factor PIF6 OS=Arabidopsis thaliana GN=PIF6 PE=1 SV=1
Length = 363
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 64/112 (57%), Gaps = 16/112 (14%)
Query: 71 KRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCNKSDRASVLDDAVNYVKALRHQLEMM 130
KR +AE +N ER +R+ INK++++L+ L+PN +K D S+LD+A+NY+ L+ Q++MM
Sbjct: 185 KRKRNAEAYNSPERNQRNDINKKMRTLQNLLPNSHKDDNESMLDEAINYMTNLQLQVQMM 244
Query: 131 SAQGGAIFQSP-FMSPSGHQSTEVPQISPNVPISPKLGMGSGIGTGMVDVLF 181
+ G F +P M P G P ++G+ G+G M + F
Sbjct: 245 TM--GNRFVTPSMMMPLG-------------PNYSQMGLAMGVGMQMGEQQF 281
>sp|Q8VZ02|BH048_ARATH Transcription factor bHLH48 OS=Arabidopsis thaliana GN=BHLH48 PE=2
SV=1
Length = 327
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Query: 69 RPKRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCNK-SDRASVLDDAVNYVKALRHQL 127
R +R + + H+ +ER RR++IN R+K L+ELVP C+K A VLD+ +N+V+ L+ Q+
Sbjct: 186 RARRGQATDNHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEIINHVQTLQRQV 245
Query: 128 EMMSAQGGAI 137
EM+S + A+
Sbjct: 246 EMLSMRLAAV 255
>sp|Q93VJ4|BEE2_ARATH Transcription factor BEE 2 OS=Arabidopsis thaliana GN=BEE2 PE=2
SV=1
Length = 304
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 55/78 (70%), Gaps = 4/78 (5%)
Query: 64 RKPDN---RPKRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCNK-SDRASVLDDAVNY 119
+KPD R +R + + H+ +ER RR++I+K++K L+++VP CNK + +A +LD+ +NY
Sbjct: 134 QKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINY 193
Query: 120 VKALRHQLEMMSAQGGAI 137
V++L+ Q+E +S + I
Sbjct: 194 VQSLQQQVEFLSMKLSVI 211
>sp|Q9ZPW3|BH064_ARATH Transcription factor bHLH64 OS=Arabidopsis thaliana GN=BHLH64 PE=2
SV=3
Length = 337
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Query: 69 RPKRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCNK-SDRASVLDDAVNYVKALRHQL 127
R +R + + H+ +ER RR++I+K++K L+++VP CNK + +A +LD+ +NYV+ L+ Q+
Sbjct: 186 RARRGQATDRHSLAERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQV 245
Query: 128 EMMSAQGGAI 137
E +S + +
Sbjct: 246 EFLSMKLAVL 255
>sp|Q0JXE7|BPE_ARATH Transcription factor BPE OS=Arabidopsis thaliana GN=BPE PE=2 SV=1
Length = 343
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
Query: 69 RPKRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCNKS-DRASVLDDAVNYVKALRHQL 127
R +R + + H+ +ER RR++I++R+K L++LVP CNK +A VLD+ +NY+++L+ Q+
Sbjct: 137 RARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQV 196
Query: 128 EMMSAQGGAI 137
E +S + A+
Sbjct: 197 EFLSMKLEAV 206
>sp|Q6NKN9|BH074_ARATH Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=2
SV=1
Length = 366
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Query: 69 RPKRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCNK-SDRASVLDDAVNYVKALRHQL 127
R +R + H+ +ER RR++I++R++ L+ELVP CNK + +A +LD+ +NYV++L+ Q+
Sbjct: 207 RARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQV 266
Query: 128 EMMSAQ 133
E +S +
Sbjct: 267 EFLSMK 272
>sp|Q9CAA9|BH049_ARATH Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2
SV=1
Length = 486
Score = 63.5 bits (153), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 69 RPKRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCNK-SDRASVLDDAVNYVKALRHQL 127
R +R + H+ +ER RR++I++R+K L++LVP CNK + +A +LD+ +NYV++L+ Q+
Sbjct: 304 RARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQV 363
Query: 128 EMMS 131
E +S
Sbjct: 364 EFLS 367
>sp|Q9SRT2|BH062_ARATH Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2
SV=1
Length = 456
Score = 63.5 bits (153), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
Query: 69 RPKRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCNK-SDRASVLDDAVNYVKALRHQL 127
R +R + + H+ +ER RR++I++R+K L++LVP CNK + +A +LD+ +NYV++L+ Q+
Sbjct: 259 RARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQV 318
Query: 128 EMMSAQGGAI 137
E +S + ++
Sbjct: 319 EFLSMKLSSV 328
>sp|Q9FJL4|BH078_ARATH Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=2
SV=1
Length = 498
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
Query: 69 RPKRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCNK-SDRASVLDDAVNYVKALRHQL 127
R +R + + H+ +ER RR++I +R+K L++LVP CNK + +A +LD+ +NYV++L+ Q+
Sbjct: 302 RARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQV 361
Query: 128 EMMSAQGGAI 137
E +S + ++
Sbjct: 362 EFLSMKLSSV 371
>sp|Q8GY61|BH063_ARATH Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2
SV=1
Length = 335
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 65/110 (59%), Gaps = 2/110 (1%)
Query: 69 RPKRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCNK-SDRASVLDDAVNYVKALRHQL 127
R +R + + H+ +ER RR++I++R+K L++LVP C+K + +A +LD+ +NYV++L+ Q+
Sbjct: 173 RARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQI 232
Query: 128 EMMSAQGGAIFQSPFMSPSGHQSTEVPQISPNVPISPKLGMGSGIGTGMV 177
E +S + + P + EV V SP++ + SG MV
Sbjct: 233 EFLSMKLAIVNPRPDFDMDDIFAKEVASTPMTVVPSPEMVL-SGYSHEMV 281
>sp|Q8GWK7|BEE3_ARATH Transcription factor BEE 3 OS=Arabidopsis thaliana GN=BEE3 PE=2
SV=1
Length = 261
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Query: 69 RPKRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCNKS-DRASVLDDAVNYVKALRHQL 127
R +R + + H+ +ER RR +IN+RLK L+++VP C K+ A++LD+ +NYV++L++Q+
Sbjct: 148 RARRGQATDSHSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEIINYVQSLQNQV 207
Query: 128 EMMSAQGGA 136
E +S + A
Sbjct: 208 EFLSMKLTA 216
>sp|Q9FE22|HFR1_ARATH Transcription factor HFR1 OS=Arabidopsis thaliana GN=HFR1 PE=1 SV=1
Length = 292
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 48/66 (72%), Gaps = 5/66 (7%)
Query: 82 SERRRRD-RINKRLKSLKELVPNCNKSDRASVLDDAVNYVKALRHQLEMMSAQGGAIFQS 140
S+RRRRD +++ +++ L++LVPNC+K+D+ SVLD + Y+K L+ QL+MMS G +
Sbjct: 141 SKRRRRDEKMSNKMRKLQQLVPNCHKTDKVSVLDKTIEYMKNLQLQLQMMSTVG----VN 196
Query: 141 PFMSPS 146
P+ P+
Sbjct: 197 PYFLPA 202
>sp|Q9LNJ5|BH013_ARATH Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2
SV=1
Length = 590
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 55/87 (63%), Gaps = 4/87 (4%)
Query: 51 DFSDATEISEGMERKPDNRPKRTHSAEV----HNQSERRRRDRINKRLKSLKELVPNCNK 106
+++DA E +P R +R + H ++ER+RR+++N+R +L+ +VPN +K
Sbjct: 402 EWADAVGADESGNNRPRKRGRRPANGRAEALNHVEAERQRREKLNQRFYALRSVVPNISK 461
Query: 107 SDRASVLDDAVNYVKALRHQLEMMSAQ 133
D+AS+L DAV+Y+ L +L++M A+
Sbjct: 462 MDKASLLGDAVSYINELHAKLKVMEAE 488
>sp|Q9C670|BH076_ARATH Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=2
SV=1
Length = 390
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
Query: 69 RPKRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCNK-SDRASVLDDAVNYVKALRHQL 127
R +R + H+ +ER RR++I++R+K L++LVP C+K + +A +LD+ +NYV++L+ Q+
Sbjct: 224 RARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQI 283
Query: 128 EMMSAQGGAI 137
E +S + A+
Sbjct: 284 EFLSMKLSAV 293
>sp|Q9LK48|BH077_ARATH Transcription factor bHLH77 OS=Arabidopsis thaliana GN=BHLH77 PE=2
SV=1
Length = 371
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 58/91 (63%), Gaps = 3/91 (3%)
Query: 69 RPKRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCNK-SDRASVLDDAVNYVKALRHQL 127
R +R + + H+ +ER RR++I++R+ L++LVP CN+ + +A +LD+ +NYV++L+ Q+
Sbjct: 192 RARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEIINYVQSLQRQV 251
Query: 128 EMMSAQGGAIFQSPFMSPSGHQSTEVPQISP 158
E +S + + +P M + + S I P
Sbjct: 252 EFLSMKLATV--NPRMEFNANASLSTEMIQP 280
>sp|Q8GZ13|BEE1_ARATH Transcription factor BEE 1 OS=Arabidopsis thaliana GN=BEE1 PE=2
SV=1
Length = 260
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Query: 69 RPKRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCNKS-DRASVLDDAVNYVKALRHQL 127
R +R + + H+ +ER RR +IN+RL+ L+++VP C K+ A++LD+ +NYV++L++Q+
Sbjct: 146 RARRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYKAMGMATMLDEIINYVQSLQNQV 205
Query: 128 EMMSAQGGA 136
E +S + A
Sbjct: 206 EFLSMKLTA 214
>sp|Q8GT73|BH119_ARATH Transcription factor bHLH119 OS=Arabidopsis thaliana GN=BHLH119
PE=2 SV=2
Length = 544
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 53/61 (86%)
Query: 71 KRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCNKSDRASVLDDAVNYVKALRHQLEMM 130
KR+ +A++HN SERRRR+RIN+R+K+L+EL+P C K+D+ S+L+D + YVK+L+ Q++MM
Sbjct: 354 KRSRAADMHNLSERRRRERINERMKTLQELLPRCRKTDKVSMLEDVIEYVKSLQLQIQMM 413
Query: 131 S 131
S
Sbjct: 414 S 414
>sp|A4D998|BH075_ARATH Transcription factor bHLH75 OS=Arabidopsis thaliana GN=BHLH75 PE=2
SV=1
Length = 223
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Query: 69 RPKRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCNKS-DRASVLDDAVNYVKALRHQL 127
R KR + + H+ +ER RR++IN+RLK L++LVP C K+ A +LD ++YV++L++Q+
Sbjct: 105 RAKRGQATDSHSLAERVRREKINERLKCLQDLVPGCYKAMGMAVMLDVIIDYVRSLQNQI 164
Query: 128 EMMSAQGGA 136
E +S + A
Sbjct: 165 EFLSMKLSA 173
>sp|Q93W88|BH137_ARATH Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137
PE=2 SV=1
Length = 286
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
Query: 69 RPKRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCNK-SDRASVLDDAVNYVKALRHQL 127
R +R + + H+ +ER RR++I++R+++L+ LVP C+K + +A +LD+ +NYV+ L+ Q+
Sbjct: 137 RARRGQATDSHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQV 196
Query: 128 EMMSAQGGAI 137
E +S + +I
Sbjct: 197 EFLSMKLTSI 206
>sp|Q5XVH0|BH109_ARATH Transcription factor bHLH109 OS=Arabidopsis thaliana GN=BHLH109
PE=2 SV=1
Length = 185
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 85/166 (51%), Gaps = 16/166 (9%)
Query: 16 QSSRNENSFDFLESSASQLPTSWHQTSHSLDTDVDDFSDATEIS--EGMERKPDNR---- 69
+++RNE + + + S S + S+ +HS + + T+ + E + +PD
Sbjct: 3 RNNRNEGTHEEEQCSLSDIIYSFCSENHSELNPLQEIFGVTKNNDHEKHDEEPDEESYRM 62
Query: 70 PKRTHSAEVHNQSERRRRDRINKRLKSLKELVPN-CNKSDRASVLDDAVNYVKALRHQLE 128
KR S E E++RR I ++ L+ L+PN C K D AS L++ + Y+K+L++Q++
Sbjct: 63 AKRQRSMEYRMMMEKKRRKEIKDKVDILQGLMPNHCTKPDLASKLENIIEYIKSLKYQVD 122
Query: 129 MMSAQGGAIFQSPFMSPSGHQSTEVPQIS------PNVPISPKLGM 168
+MS A +P +P + + + P +S P VP+ P+ M
Sbjct: 123 VMSM---AYTTTPVYTPPFYAAAQAPCMSPWGYYTPGVPMMPQQNM 165
>sp|Q570R7|PIF7_ARATH Transcription factor PIF7 OS=Arabidopsis thaliana GN=BHLH72 PE=1
SV=2
Length = 366
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 73/118 (61%), Gaps = 13/118 (11%)
Query: 27 LESSASQLPTSW--HQTSHSLDT----DVDDFSDATEI--SEGMERKPDNRP-----KRT 73
+ +SAS SW ++ SL T D D F +E +EG E++ +R
Sbjct: 106 VTASASGTNMSWASFESGRSLKTARTGDRDYFRSGSETQDTEGDEQETRGEAGRSNGRRG 165
Query: 74 HSAEVHNQSERRRRDRINKRLKSLKELVPNCNKSDRASVLDDAVNYVKALRHQLEMMS 131
+A +HN+SERRRRDRIN+R+++L++L+P +K+D+ S+LDD + ++K L+ Q++ MS
Sbjct: 166 RAAAIHNESERRRRDRINQRMRTLQKLLPTASKADKVSILDDVIEHLKQLQAQVQFMS 223
>sp|Q3E7L7|BH139_ARATH Transcription factor bHLH139 OS=Arabidopsis thaliana GN=BHLH139
PE=4 SV=1
Length = 223
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 54/75 (72%), Gaps = 2/75 (2%)
Query: 59 SEGMERKPDNRPKRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCNKSDRASVLDDAVN 118
S+ ++RK + R +++ + R+RR+RIN RLK+L+ LVPN K D +++L+DAV+
Sbjct: 125 SKSLKRKA--KANRGIASDPQSLYARKRRERINDRLKTLQSLVPNGTKVDISTMLEDAVH 182
Query: 119 YVKALRHQLEMMSAQ 133
YVK L+ Q++++S++
Sbjct: 183 YVKFLQLQIKLLSSE 197
>sp|Q9ZPY8|AIB_ARATH Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis
thaliana GN=AIB PE=2 SV=2
Length = 566
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 51/72 (70%), Gaps = 4/72 (5%)
Query: 63 ERKPDNRPKRTHSAEV----HNQSERRRRDRINKRLKSLKELVPNCNKSDRASVLDDAVN 118
E++P R ++ + H ++ER+RR+++N+R +L+ +VPN +K D+AS+L DA++
Sbjct: 376 EKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAIS 435
Query: 119 YVKALRHQLEMM 130
Y+K L+ ++++M
Sbjct: 436 YIKELQEKVKIM 447
>sp|Q9FIP9|ATR2_ARATH Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1
Length = 592
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 48/70 (68%), Gaps = 4/70 (5%)
Query: 63 ERKPDNRPKRTHSAEV----HNQSERRRRDRINKRLKSLKELVPNCNKSDRASVLDDAVN 118
E+KP R ++ + H ++ER+RR+++N+R SL+ +VPN +K D+AS+L DA++
Sbjct: 396 EKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAIS 455
Query: 119 YVKALRHQLE 128
Y+ L+ +L+
Sbjct: 456 YINELKSKLQ 465
>sp|Q9LV17|BH079_ARATH Transcription factor bHLH79 OS=Arabidopsis thaliana GN=BHLH79 PE=2
SV=1
Length = 281
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Query: 69 RPKRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCNK-SDRASVLDDAVNYVKALRHQL 127
R +R + + H+ +ER RR++I++++ +L++++P CNK +A VLD+ +NY+++L+ Q+
Sbjct: 154 RARRGQATDRHSLAERARREKISEKMTALQDIIPGCNKIIGKALVLDEIINYIQSLQRQV 213
Query: 128 EMMSAQ 133
E +S +
Sbjct: 214 EFLSMK 219
>sp|Q2HIV9|BH035_ARATH Transcription factor bHLH35 OS=Arabidopsis thaliana GN=BHLH35 PE=2
SV=1
Length = 248
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 62/101 (61%), Gaps = 5/101 (4%)
Query: 82 SERRRRDRINKRLKSLKELVPNCNKSDRASVLDDAVNYVKALRHQLEMMSAQGGAIFQSP 141
SER RR ++N+RL +L+ +VPN K D+AS++ DA++Y++ L+++ + + A+ + +P
Sbjct: 59 SERNRRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGLQYEEKKLEAEIRELESTP 118
Query: 142 FMSPSGHQSTEVPQISPNVPISPK--LGMGSGIGTGMVDVL 180
S S + + + VP++ K + SG T +++VL
Sbjct: 119 KSSLSFSKDFDRDLL---VPVTSKKMKQLDSGSSTSLIEVL 156
>sp|Q9ZVX2|AMS_ARATH Transcription factor ABORTED MICROSPORES OS=Arabidopsis thaliana
GN=AMS PE=1 SV=2
Length = 571
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 35/45 (77%)
Query: 82 SERRRRDRINKRLKSLKELVPNCNKSDRASVLDDAVNYVKALRHQ 126
+ERRRR ++N RL +L+ LVP K DRAS+L DA+NYVK L+++
Sbjct: 318 AERRRRKKLNDRLYALRSLVPRITKLDRASILGDAINYVKELQNE 362
>sp|O49687|BH004_ARATH Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2
SV=1
Length = 589
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 48/70 (68%), Gaps = 4/70 (5%)
Query: 63 ERKPDNRPKRTHSAEV----HNQSERRRRDRINKRLKSLKELVPNCNKSDRASVLDDAVN 118
E+KP R ++ + H ++ER+RR+++N+R SL+ +VPN +K D+AS+L DA++
Sbjct: 397 EKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAIS 456
Query: 119 YVKALRHQLE 128
Y+ L+ +L+
Sbjct: 457 YISELKSKLQ 466
>sp|Q93Y00|BH007_ARATH Transcription factor bHLH7 OS=Arabidopsis thaliana GN=BHLH7 PE=2
SV=1
Length = 302
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 59/82 (71%), Gaps = 2/82 (2%)
Query: 65 KPDNRPKRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCNKSDRASVLDDAVNYVKALR 124
+P R +R + + H+ +ER RR+RI +R++SL+ELVP NK+DRA+++D+ V+YVK LR
Sbjct: 141 RPRVRARRGQATDPHSIAERLRRERIAERIRSLQELVPTVNKTDRAAMIDEIVDYVKFLR 200
Query: 125 HQLEM--MSAQGGAIFQSPFMS 144
Q+++ MS GGA +P ++
Sbjct: 201 LQVKVLSMSRLGGAGAVAPLVT 222
>sp|Q8LEG1|BH054_ARATH Transcription factor bHLH54 OS=Arabidopsis thaliana GN=BHLH54 PE=2
SV=1
Length = 258
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 42/49 (85%)
Query: 84 RRRRDRINKRLKSLKELVPNCNKSDRASVLDDAVNYVKALRHQLEMMSA 132
R+RR++IN+RLK+L+ LVPN K D +++L++AV+YVK L+ Q++++S+
Sbjct: 183 RKRREKINERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSS 231
>sp|Q84WK0|BH085_ARATH Transcription factor bHLH85 OS=Arabidopsis thaliana GN=BHLH85 PE=2
SV=1
Length = 352
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 41/49 (83%)
Query: 84 RRRRDRINKRLKSLKELVPNCNKSDRASVLDDAVNYVKALRHQLEMMSA 132
R+RR+RIN+RL+ L+ LVPN K D +++L++AV+YVK L+ Q++++S+
Sbjct: 282 RKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSS 330
>sp|O22768|UNE12_ARATH Transcription factor UNE12 OS=Arabidopsis thaliana GN=UNE12 PE=2
SV=2
Length = 310
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 59/82 (71%), Gaps = 2/82 (2%)
Query: 65 KPDNRPKRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCNKSDRASVLDDAVNYVKALR 124
+P R +R + + H+ +ER RR+RI +R+++L+ELVP NK+DRA+++D+ V+YVK LR
Sbjct: 143 RPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLR 202
Query: 125 HQLEM--MSAQGGAIFQSPFMS 144
Q+++ MS GGA +P ++
Sbjct: 203 LQVKVLSMSRLGGAGAVAPLVT 224
>sp|Q39204|RAP1_ARATH Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2
Length = 623
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Query: 46 DTDVDDFSDATEISEGMERKPDNRPKRTHSAEV----HNQSERRRRDRINKRLKSLKELV 101
++D D + +E++P R ++ + H ++ER+RR+++N+R +L+ +V
Sbjct: 416 ESDHSDLEASVVKEVAVEKRPKKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVV 475
Query: 102 PNCNKSDRASVLDDAVNYVKALRHQL 127
PN +K D+AS+L DA+ Y+ L+ ++
Sbjct: 476 PNVSKMDKASLLGDAIAYINELKSKV 501
>sp|Q7XHI9|BH084_ARATH Transcription factor bHLH84 OS=Arabidopsis thaliana GN=BHLH84 PE=2
SV=1
Length = 328
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 49/76 (64%)
Query: 57 EISEGMERKPDNRPKRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCNKSDRASVLDDA 116
E S+ + R R + + + R+RR+RIN+RL+ L+ LVPN K D +++L++A
Sbjct: 226 EDSKALNLNGKTRASRGAATDPQSLYARKRRERINERLRILQHLVPNGTKVDISTMLEEA 285
Query: 117 VNYVKALRHQLEMMSA 132
V YVK L+ Q++++S+
Sbjct: 286 VQYVKFLQLQIKLLSS 301
>sp|Q9FJ00|BH086_ARATH Putative transcription factor bHLH086 OS=Arabidopsis thaliana
GN=BHLH86 PE=4 SV=2
Length = 307
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 7/74 (9%)
Query: 69 RPKRTHS-AEVHNQSERRRRDRINKRLKSLKELVPNCNKSDRASVLDDAVNYVKALRHQL 127
+PK T S + + + + RR+RI++RLK L+ELVPN K D ++L+ A+ YVK L+ Q+
Sbjct: 201 KPKATTSPKDPQSLAAKNRRERISERLKVLQELVPNGTKVDLVTMLEKAIGYVKFLQVQV 260
Query: 128 EMMS------AQGG 135
++++ AQGG
Sbjct: 261 KVLAADEFWPAQGG 274
>sp|Q9LSE2|ICE1_ARATH Transcription factor ICE1 OS=Arabidopsis thaliana GN=SCRM PE=1 SV=1
Length = 494
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 8/79 (10%)
Query: 82 SERRRRDRINKRLKSLKELVPNCNKSDRASVLDDAVNYVKALRHQL-----EMMSAQGGA 136
+ERRRR ++N RL L+ +VP +K DRAS+L DA++Y+K L ++ E+ S G+
Sbjct: 311 AERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGS 370
Query: 137 IFQSPFMSPSGHQSTEVPQ 155
+ P S S H T PQ
Sbjct: 371 L---PPTSSSFHPLTPTPQ 386
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.126 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,294,321
Number of Sequences: 539616
Number of extensions: 3100820
Number of successful extensions: 8780
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 207
Number of HSP's that attempted gapping in prelim test: 8463
Number of HSP's gapped (non-prelim): 456
length of query: 201
length of database: 191,569,459
effective HSP length: 112
effective length of query: 89
effective length of database: 131,132,467
effective search space: 11670789563
effective search space used: 11670789563
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)