Query 044343
Match_columns 201
No_of_seqs 261 out of 1238
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 13:43:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044343.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044343hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00010 HLH: Helix-loop-helix 99.6 2.2E-15 4.8E-20 101.5 5.7 49 76-124 2-55 (55)
2 cd00083 HLH Helix-loop-helix d 99.6 5.4E-15 1.2E-19 100.2 6.4 53 75-127 4-59 (60)
3 smart00353 HLH helix loop heli 99.5 6.9E-14 1.5E-18 92.9 6.8 49 80-128 1-52 (53)
4 KOG3561 Aryl-hydrocarbon recep 99.4 3.7E-14 8E-19 138.5 3.5 86 76-162 21-110 (803)
5 KOG1318 Helix loop helix trans 99.4 2.4E-13 5.2E-18 124.4 6.2 59 70-128 228-290 (411)
6 KOG1319 bHLHZip transcription 99.3 4.4E-12 9.5E-17 105.1 5.7 66 69-134 56-128 (229)
7 KOG4304 Transcriptional repres 99.2 2.4E-11 5.1E-16 105.5 3.9 56 73-128 30-93 (250)
8 KOG2483 Upstream transcription 98.8 7.7E-09 1.7E-13 88.9 6.8 59 71-129 55-116 (232)
9 KOG2588 Predicted DNA-binding 98.6 1.5E-08 3.2E-13 100.3 3.0 62 74-135 275-337 (953)
10 KOG3960 Myogenic helix-loop-he 98.5 2.6E-07 5.6E-12 80.0 7.5 62 73-134 116-179 (284)
11 KOG0561 bHLH transcription fac 98.3 3.2E-07 6.8E-12 81.3 3.5 59 74-132 59-119 (373)
12 KOG4029 Transcription factor H 98.3 1.3E-06 2.8E-11 74.7 6.1 60 74-133 108-171 (228)
13 PLN03217 transcription factor 98.2 3.6E-06 7.8E-11 61.8 5.2 51 86-136 18-74 (93)
14 KOG3910 Helix loop helix trans 97.7 2.6E-05 5.6E-10 73.3 3.5 58 73-130 524-585 (632)
15 KOG4447 Transcription factor T 96.8 0.00072 1.6E-08 54.9 2.1 54 75-128 78-133 (173)
16 KOG3898 Transcription factor N 95.8 0.03 6.5E-07 48.9 6.8 53 75-127 72-127 (254)
17 KOG3560 Aryl-hydrocarbon recep 95.0 0.028 6.1E-07 53.9 4.3 45 78-122 28-76 (712)
18 KOG4395 Transcription factor A 95.0 0.042 9.1E-07 48.1 5.0 55 74-128 173-230 (285)
19 KOG3558 Hypoxia-inducible fact 92.3 0.13 2.7E-06 50.7 3.4 46 77-122 48-97 (768)
20 KOG3559 Transcriptional regula 91.4 0.22 4.7E-06 46.7 3.7 43 81-123 7-53 (598)
21 KOG3582 Mlx interactors and re 77.0 0.32 6.9E-06 48.1 -2.6 61 74-134 650-715 (856)
22 KOG4447 Transcription factor T 72.7 2.6 5.6E-05 34.6 2.0 42 82-123 29-72 (173)
23 PF14689 SPOB_a: Sensor_kinase 63.5 31 0.00068 23.4 5.7 43 82-131 15-57 (62)
24 KOG3582 Mlx interactors and re 53.5 4.9 0.00011 40.1 0.3 57 75-134 787-848 (856)
25 PF02344 Myc-LZ: Myc leucine z 46.0 24 0.00053 21.3 2.4 19 81-99 11-29 (32)
26 PF05687 DUF822: Plant protein 41.8 38 0.00083 27.5 3.7 27 73-99 9-35 (150)
27 KOG4571 Activating transcripti 35.4 2.1E+02 0.0046 25.8 7.7 21 108-128 269-289 (294)
28 COG3074 Uncharacterized protei 35.2 45 0.00098 23.9 2.8 23 113-135 13-35 (79)
29 TIGR00986 3a0801s05tom22 mitoc 32.5 39 0.00084 27.4 2.4 33 89-121 50-82 (145)
30 PF15392 Joubert: Joubert synd 32.4 1.3E+02 0.0028 27.5 5.9 30 73-102 54-83 (329)
31 PLN02705 beta-amylase 31.7 94 0.002 31.0 5.2 27 73-99 82-108 (681)
32 PTZ00405 cytochrome c; Provisi 31.2 88 0.0019 23.9 4.1 39 86-124 71-113 (114)
33 COG3416 Uncharacterized protei 30.1 1.2E+02 0.0026 26.2 5.1 32 113-146 57-88 (233)
34 PF07743 HSCB_C: HSCB C-termin 30.1 1.9E+02 0.004 19.9 5.6 48 80-128 30-77 (78)
35 PRK13702 replication protein; 28.2 1E+02 0.0022 22.8 3.8 42 77-118 22-76 (85)
36 COG1076 DjlA DnaJ-domain-conta 27.7 64 0.0014 26.2 3.0 57 77-134 114-170 (174)
37 KOG3584 cAMP response element 25.6 35 0.00075 30.9 1.1 19 117-135 311-329 (348)
38 KOG0639 Transducin-like enhanc 23.9 1.9E+02 0.0041 28.4 5.7 27 87-113 77-104 (705)
39 PF04281 Tom22: Mitochondrial 23.7 65 0.0014 25.8 2.2 16 90-105 53-68 (137)
40 PRK15422 septal ring assembly 23.7 1E+02 0.0022 22.4 3.1 23 113-135 13-35 (79)
41 PF03791 KNOX2: KNOX2 domain ; 22.1 1.2E+02 0.0026 20.3 3.0 21 111-131 31-51 (52)
42 PF09849 DUF2076: Uncharacteri 21.7 2.6E+02 0.0055 24.5 5.7 14 120-133 57-70 (247)
43 PF02186 TFIIE_beta: TFIIE bet 21.0 84 0.0018 21.8 2.1 16 108-123 2-17 (65)
44 PF13713 BRX_N: Transcription 20.7 1.5E+02 0.0032 18.7 3.0 21 114-134 8-28 (39)
45 PF06005 DUF904: Protein of un 20.3 1.3E+02 0.0029 21.2 3.0 22 113-134 13-34 (72)
No 1
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.59 E-value=2.2e-15 Score=101.45 Aligned_cols=49 Identities=49% Similarity=0.899 Sum_probs=46.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhcCCC-----CCcchHhHHHHHHHHHHHHH
Q 044343 76 AEVHNQSERRRRDRINKRLKSLKELVPNC-----NKSDRASVLDDAVNYVKALR 124 (201)
Q Consensus 76 ~~~H~~~ER~RR~~in~~~~~Lr~lvP~~-----~K~dKasiL~~AI~YIk~Lq 124 (201)
|..|+..||+||++||++|.+|+.+||.+ .|++|++||+.||+||++||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 67899999999999999999999999987 38999999999999999997
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.57 E-value=5.4e-15 Score=100.20 Aligned_cols=53 Identities=43% Similarity=0.735 Sum_probs=50.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHhhcCCC---CCcchHhHHHHHHHHHHHHHHHH
Q 044343 75 SAEVHNQSERRRRDRINKRLKSLKELVPNC---NKSDRASVLDDAVNYVKALRHQL 127 (201)
Q Consensus 75 ~~~~H~~~ER~RR~~in~~~~~Lr~lvP~~---~K~dKasiL~~AI~YIk~Lq~~v 127 (201)
.+..|+..||+||++||++|.+|+.+||.. .|++|++||+.||+||++|+.++
T Consensus 4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999998 69999999999999999999876
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.50 E-value=6.9e-14 Score=92.95 Aligned_cols=49 Identities=39% Similarity=0.706 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCC---CCCcchHhHHHHHHHHHHHHHHHHH
Q 044343 80 NQSERRRRDRINKRLKSLKELVPN---CNKSDRASVLDDAVNYVKALRHQLE 128 (201)
Q Consensus 80 ~~~ER~RR~~in~~~~~Lr~lvP~---~~K~dKasiL~~AI~YIk~Lq~~v~ 128 (201)
|..||+||++||++|..|+.+||. ..|++|++||..||+||++|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999996 4599999999999999999999875
No 4
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=99.45 E-value=3.7e-14 Score=138.51 Aligned_cols=86 Identities=24% Similarity=0.366 Sum_probs=77.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhcCCCC----CcchHhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccCCCc
Q 044343 76 AEVHNQSERRRRDRINKRLKSLKELVPNCN----KSDRASVLDDAVNYVKALRHQLEMMSAQGGAIFQSPFMSPSGHQST 151 (201)
Q Consensus 76 ~~~H~~~ER~RR~~in~~~~~Lr~lvP~~~----K~dKasiL~~AI~YIk~Lq~~v~~l~~~~~~~~~~~~~~~~~~~~l 151 (201)
|+.|+.+|||||+++|..|.+|.+|||.|. |+||.+||++||.+||.++..- .....+...|+|.|+...++.||
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~~-~~~~~~~~d~KpSflS~~eL~~L 99 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQE-SENSSIDQDYKPSFLSNDELTHL 99 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhhh-cccccccccccccccchHHHHHH
Confidence 788999999999999999999999999875 9999999999999999998875 23344557899999999999999
Q ss_pred ccCCCCCCCCC
Q 044343 152 EVPQISPNVPI 162 (201)
Q Consensus 152 ~~~~~~~f~p~ 162 (201)
+++++++|+-+
T Consensus 100 mLeAlDGF~fv 110 (803)
T KOG3561|consen 100 ILEALDGFLFV 110 (803)
T ss_pred HHHHhcCeEEE
Confidence 99999998643
No 5
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.41 E-value=2.4e-13 Score=124.42 Aligned_cols=59 Identities=37% Similarity=0.800 Sum_probs=52.6
Q ss_pred CCCccchhhhhHHHHHHHHHHHHHHHHHHhhcCCCC----CcchHhHHHHHHHHHHHHHHHHH
Q 044343 70 PKRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCN----KSDRASVLDDAVNYVKALRHQLE 128 (201)
Q Consensus 70 ~~~~~~~~~H~~~ER~RR~~in~~~~~Lr~lvP~~~----K~dKasiL~~AI~YIk~Lq~~v~ 128 (201)
.+.+++|..||++|||||++||++|++|..|||.|. |..|..||..+++||+.||+..+
T Consensus 228 ~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q 290 (411)
T KOG1318|consen 228 ERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ 290 (411)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence 344567889999999999999999999999999985 78999999999999999976655
No 6
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=99.28 E-value=4.4e-12 Score=105.15 Aligned_cols=66 Identities=26% Similarity=0.534 Sum_probs=57.0
Q ss_pred CCCCccchhhhhHHHHHHHHHHHHHHHHHHhhcCCCC-------CcchHhHHHHHHHHHHHHHHHHHHHhhcc
Q 044343 69 RPKRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCN-------KSDRASVLDDAVNYVKALRHQLEMMSAQG 134 (201)
Q Consensus 69 ~~~~~~~~~~H~~~ER~RR~~in~~~~~Lr~lvP~~~-------K~dKasiL~~AI~YIk~Lq~~v~~l~~~~ 134 (201)
...+.++|..|...||+||+.||..+..|+.|||.|. |+.||.||.++|+||.+|++++..-+.+.
T Consensus 56 ~syk~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~ 128 (229)
T KOG1319|consen 56 ESYKDRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEV 128 (229)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667889999999999999999999999999764 88999999999999999988876655444
No 7
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=99.15 E-value=2.4e-11 Score=105.53 Aligned_cols=56 Identities=30% Similarity=0.498 Sum_probs=49.2
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHhhcCCC--------CCcchHhHHHHHHHHHHHHHHHHH
Q 044343 73 THSAEVHNQSERRRRDRINKRLKSLKELVPNC--------NKSDRASVLDDAVNYVKALRHQLE 128 (201)
Q Consensus 73 ~~~~~~H~~~ER~RR~~in~~~~~Lr~lvP~~--------~K~dKasiL~~AI~YIk~Lq~~v~ 128 (201)
..++..|-++|||||+|||+++.+|+.||+.+ .|++||.||+.||+|+|.||...+
T Consensus 30 ~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 30 QYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence 33566789999999999999999999999953 388999999999999999987654
No 8
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.83 E-value=7.7e-09 Score=88.92 Aligned_cols=59 Identities=31% Similarity=0.447 Sum_probs=49.9
Q ss_pred CCccchhhhhHHHHHHHHHHHHHHHHHHhhcCCCC--Ccc-hHhHHHHHHHHHHHHHHHHHH
Q 044343 71 KRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCN--KSD-RASVLDDAVNYVKALRHQLEM 129 (201)
Q Consensus 71 ~~~~~~~~H~~~ER~RR~~in~~~~~Lr~lvP~~~--K~d-KasiL~~AI~YIk~Lq~~v~~ 129 (201)
....+|..||+.||+||+.|+++|..|+.+||... +.. .++||++|++||+.|+.+...
T Consensus 55 ~~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~ 116 (232)
T KOG2483|consen 55 SAASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSAT 116 (232)
T ss_pred CCCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHH
Confidence 34556889999999999999999999999999865 433 699999999999998765533
No 9
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.63 E-value=1.5e-08 Score=100.28 Aligned_cols=62 Identities=29% Similarity=0.523 Sum_probs=56.0
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHhhcCCCC-CcchHhHHHHHHHHHHHHHHHHHHHhhccC
Q 044343 74 HSAEVHNQSERRRRDRINKRLKSLKELVPNCN-KSDRASVLDDAVNYVKALRHQLEMMSAQGG 135 (201)
Q Consensus 74 ~~~~~H~~~ER~RR~~in~~~~~Lr~lvP~~~-K~dKasiL~~AI~YIk~Lq~~v~~l~~~~~ 135 (201)
.+|.+||++|||.|..||++|.+|+.+||+.. |+.|..+|..||+||++|+...+.+..++.
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~ 337 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENA 337 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhh
Confidence 45889999999999999999999999999987 999999999999999999988877765543
No 10
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=98.53 E-value=2.6e-07 Score=79.96 Aligned_cols=62 Identities=21% Similarity=0.392 Sum_probs=53.5
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHH-HhhcCCCC-CcchHhHHHHHHHHHHHHHHHHHHHhhcc
Q 044343 73 THSAEVHNQSERRRRDRINKRLKSL-KELVPNCN-KSDRASVLDDAVNYVKALRHQLEMMSAQG 134 (201)
Q Consensus 73 ~~~~~~H~~~ER~RR~~in~~~~~L-r~lvP~~~-K~dKasiL~~AI~YIk~Lq~~v~~l~~~~ 134 (201)
.-+|+.-.+.||||-.++|+.|++| |.-+++.+ .+-|.+||..||+||..||.-++++....
T Consensus 116 vDRRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~ 179 (284)
T KOG3960|consen 116 VDRRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAE 179 (284)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3457778899999999999999999 55667765 88999999999999999999998887544
No 11
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=98.34 E-value=3.2e-07 Score=81.30 Aligned_cols=59 Identities=29% Similarity=0.497 Sum_probs=51.8
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHhhcCCCC--CcchHhHHHHHHHHHHHHHHHHHHHhh
Q 044343 74 HSAEVHNQSERRRRDRINKRLKSLKELVPNCN--KSDRASVLDDAVNYVKALRHQLEMMSA 132 (201)
Q Consensus 74 ~~~~~H~~~ER~RR~~in~~~~~Lr~lvP~~~--K~dKasiL~~AI~YIk~Lq~~v~~l~~ 132 (201)
-+|+.-|.-||||-.-||..|..||.|||... |++||.||+.+.+||.+|..+.-+|--
T Consensus 59 mRReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ll~ 119 (373)
T KOG0561|consen 59 MRREIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTELLP 119 (373)
T ss_pred HHHHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccccc
Confidence 45788899999999999999999999999765 999999999999999999776554443
No 12
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=98.30 E-value=1.3e-06 Score=74.66 Aligned_cols=60 Identities=25% Similarity=0.413 Sum_probs=52.3
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHhhcCC----CCCcchHhHHHHHHHHHHHHHHHHHHHhhc
Q 044343 74 HSAEVHNQSERRRRDRINKRLKSLKELVPN----CNKSDRASVLDDAVNYVKALRHQLEMMSAQ 133 (201)
Q Consensus 74 ~~~~~H~~~ER~RR~~in~~~~~Lr~lvP~----~~K~dKasiL~~AI~YIk~Lq~~v~~l~~~ 133 (201)
..+..+|.+||+|-..+|..|.+||.+||. ..|++|..+|..||.||++|+.-++.-+..
T Consensus 108 ~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~ 171 (228)
T KOG4029|consen 108 AQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAP 171 (228)
T ss_pred hhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccC
Confidence 346678999999999999999999999995 348999999999999999999888766543
No 13
>PLN03217 transcription factor ATBS1; Provisional
Probab=98.17 E-value=3.6e-06 Score=61.83 Aligned_cols=51 Identities=29% Similarity=0.533 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhhcCCC------CCcchHhHHHHHHHHHHHHHHHHHHHhhccCC
Q 044343 86 RRDRINKRLKSLKELVPNC------NKSDRASVLDDAVNYVKALRHQLEMMSAQGGA 136 (201)
Q Consensus 86 RR~~in~~~~~Lr~lvP~~------~K~dKasiL~~AI~YIk~Lq~~v~~l~~~~~~ 136 (201)
--++||+.+..|+.|+|.. .|...+-||+++|.||+.|++++..|++....
T Consensus 18 sddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~ 74 (93)
T PLN03217 18 SEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSE 74 (93)
T ss_pred CHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999999963 27788899999999999999999999876543
No 14
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=97.71 E-value=2.6e-05 Score=73.25 Aligned_cols=58 Identities=24% Similarity=0.296 Sum_probs=49.2
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHhhcCCCCC----cchHhHHHHHHHHHHHHHHHHHHH
Q 044343 73 THSAEVHNQSERRRRDRINKRLKSLKELVPNCNK----SDRASVLDDAVNYVKALRHQLEMM 130 (201)
Q Consensus 73 ~~~~~~H~~~ER~RR~~in~~~~~Lr~lvP~~~K----~dKasiL~~AI~YIk~Lq~~v~~l 130 (201)
+.+|...|.+||.|-..||+.|++|..++-..-| ..|.-||..||..|-.|++||.+-
T Consensus 524 kERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 524 KERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred HHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 4456778999999999999999999998764332 378999999999999999999764
No 15
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=96.79 E-value=0.00072 Score=54.89 Aligned_cols=54 Identities=24% Similarity=0.425 Sum_probs=48.7
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHhhcCCCC--CcchHhHHHHHHHHHHHHHHHHH
Q 044343 75 SAEVHNQSERRRRDRINKRLKSLKELVPNCN--KSDRASVLDDAVNYVKALRHQLE 128 (201)
Q Consensus 75 ~~~~H~~~ER~RR~~in~~~~~Lr~lvP~~~--K~dKasiL~~AI~YIk~Lq~~v~ 128 (201)
.+.-||+.||+|-..+|+.|..||.++|... |++|.-.|+-|..||-+|-+-.+
T Consensus 78 qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl~ 133 (173)
T KOG4447|consen 78 QRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQ 133 (173)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhccc
Confidence 3668999999999999999999999999754 99999999999999999976553
No 16
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=95.80 E-value=0.03 Score=48.94 Aligned_cols=53 Identities=32% Similarity=0.441 Sum_probs=46.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHhhcCC---CCCcchHhHHHHHHHHHHHHHHHH
Q 044343 75 SAEVHNQSERRRRDRINKRLKSLKELVPN---CNKSDRASVLDDAVNYVKALRHQL 127 (201)
Q Consensus 75 ~~~~H~~~ER~RR~~in~~~~~Lr~lvP~---~~K~dKasiL~~AI~YIk~Lq~~v 127 (201)
+|..=|..||+|-..+|+.|..||++||. ..|+.|...|..|-+||..|+.-.
T Consensus 72 rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~~ 127 (254)
T KOG3898|consen 72 RRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEVL 127 (254)
T ss_pred hcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcccc
Confidence 35566889999999999999999999995 339999999999999999998543
No 17
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=95.03 E-value=0.028 Score=53.93 Aligned_cols=45 Identities=36% Similarity=0.578 Sum_probs=38.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcCCCC----CcchHhHHHHHHHHHHH
Q 044343 78 VHNQSERRRRDRINKRLKSLKELVPNCN----KSDRASVLDDAVNYVKA 122 (201)
Q Consensus 78 ~H~~~ER~RR~~in~~~~~Lr~lvP~~~----K~dKasiL~~AI~YIk~ 122 (201)
.+.---||-|+|+|.-++.|..|+|-.. |+||.+||.-+|-|++-
T Consensus 28 tkSNPSKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 28 TKSNPSKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLRV 76 (712)
T ss_pred ccCCcchhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHHH
Confidence 3444567889999999999999999653 99999999999999863
No 18
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=95.02 E-value=0.042 Score=48.12 Aligned_cols=55 Identities=31% Similarity=0.445 Sum_probs=48.6
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHhhcCCCC---CcchHhHHHHHHHHHHHHHHHHH
Q 044343 74 HSAEVHNQSERRRRDRINKRLKSLKELVPNCN---KSDRASVLDDAVNYVKALRHQLE 128 (201)
Q Consensus 74 ~~~~~H~~~ER~RR~~in~~~~~Lr~lvP~~~---K~dKasiL~~AI~YIk~Lq~~v~ 128 (201)
.+|..-|..||+|-..+|..|..||..||... |++|-..|+.|-.||--|-...+
T Consensus 173 ~rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 173 HRRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred hhhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 34567789999999999999999999999765 88999999999999999877664
No 19
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=92.31 E-value=0.13 Score=50.72 Aligned_cols=46 Identities=26% Similarity=0.461 Sum_probs=39.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhcCCCC----CcchHhHHHHHHHHHHH
Q 044343 77 EVHNQSERRRRDRINKRLKSLKELVPNCN----KSDRASVLDDAVNYVKA 122 (201)
Q Consensus 77 ~~H~~~ER~RR~~in~~~~~Lr~lvP~~~----K~dKasiL~~AI~YIk~ 122 (201)
+.-.-+.|-||-+=|+-|-+|..+||-.. .+|||+|+.-||-|+|-
T Consensus 48 EkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 48 EKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 33446788999999999999999999533 78999999999999874
No 20
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=91.35 E-value=0.22 Score=46.67 Aligned_cols=43 Identities=28% Similarity=0.478 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCC----CcchHhHHHHHHHHHHHH
Q 044343 81 QSERRRRDRINKRLKSLKELVPNCN----KSDRASVLDDAVNYVKAL 123 (201)
Q Consensus 81 ~~ER~RR~~in~~~~~Lr~lvP~~~----K~dKasiL~~AI~YIk~L 123 (201)
-..|.||++=|.-|.+|..++|-.. ..||++|+.-|..|||--
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr 53 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMR 53 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHH
Confidence 4568899999999999999999654 689999999999999854
No 21
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=77.01 E-value=0.32 Score=48.10 Aligned_cols=61 Identities=20% Similarity=0.351 Sum_probs=51.5
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHhhcCCCC-----CcchHhHHHHHHHHHHHHHHHHHHHhhcc
Q 044343 74 HSAEVHNQSERRRRDRINKRLKSLKELVPNCN-----KSDRASVLDDAVNYVKALRHQLEMMSAQG 134 (201)
Q Consensus 74 ~~~~~H~~~ER~RR~~in~~~~~Lr~lvP~~~-----K~dKasiL~~AI~YIk~Lq~~v~~l~~~~ 134 (201)
.+.-.|.-+|.+||.+|+-+|..|-.++-+.. |+.++.-|+.++.||-.++.+...+..+.
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~ 715 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEA 715 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhh
Confidence 34567999999999999999999999998764 77888889999999998887776665544
No 22
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=72.68 E-value=2.6 Score=34.55 Aligned_cols=42 Identities=21% Similarity=0.318 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCC--CcchHhHHHHHHHHHHHH
Q 044343 82 SERRRRDRINKRLKSLKELVPNCN--KSDRASVLDDAVNYVKAL 123 (201)
Q Consensus 82 ~ER~RR~~in~~~~~Lr~lvP~~~--K~dKasiL~~AI~YIk~L 123 (201)
.|+.|..++++.+.-|+.|+|+.. ++.+---|..+-+||.+|
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~ 72 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSL 72 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhH
Confidence 688899999999999999999865 333333355555555554
No 23
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=63.46 E-value=31 Score=23.37 Aligned_cols=43 Identities=26% Similarity=0.387 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcchHhHHHHHHHHHHHHHHHHHHHh
Q 044343 82 SERRRRDRINKRLKSLKELVPNCNKSDRASVLDDAVNYVKALRHQLEMMS 131 (201)
Q Consensus 82 ~ER~RR~~in~~~~~Lr~lvP~~~K~dKasiL~~AI~YIk~Lq~~v~~l~ 131 (201)
.=|..|-.++..+..+..++ ...=.++|.+||+.+-..++..+
T Consensus 15 ~lR~~RHD~~NhLqvI~gll-------qlg~~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 15 SLRAQRHDFLNHLQVIYGLL-------QLGKYEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HTT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHH-------HCCCHHHHHHHHHHHHHHHHHHH
Confidence 34666777889999999888 44446788999999998887764
No 24
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=53.47 E-value=4.9 Score=40.11 Aligned_cols=57 Identities=18% Similarity=0.128 Sum_probs=48.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHhhcCCCC-----CcchHhHHHHHHHHHHHHHHHHHHHhhcc
Q 044343 75 SAEVHNQSERRRRDRINKRLKSLKELVPNCN-----KSDRASVLDDAVNYVKALRHQLEMMSAQG 134 (201)
Q Consensus 75 ~~~~H~~~ER~RR~~in~~~~~Lr~lvP~~~-----K~dKasiL~~AI~YIk~Lq~~v~~l~~~~ 134 (201)
.+..|.-.+||||-.+.++|..|-+|.|..- ++.+++||. +.||.+++.-+.+.++.
T Consensus 787 v~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~ 848 (856)
T KOG3582|consen 787 VSAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKI 848 (856)
T ss_pred eecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhh
Confidence 3556888999999999999999999999532 679999999 89999998888777654
No 25
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=45.99 E-value=24 Score=21.32 Aligned_cols=19 Identities=32% Similarity=0.737 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 044343 81 QSERRRRDRINKRLKSLKE 99 (201)
Q Consensus 81 ~~ER~RR~~in~~~~~Lr~ 99 (201)
..=|+||+.++.++..||.
T Consensus 11 eqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 11 EQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4457899999999999875
No 26
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=41.79 E-value=38 Score=27.48 Aligned_cols=27 Identities=30% Similarity=0.366 Sum_probs=17.1
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHh
Q 044343 73 THSAEVHNQSERRRRDRINKRLKSLKE 99 (201)
Q Consensus 73 ~~~~~~H~~~ER~RR~~in~~~~~Lr~ 99 (201)
.+.|+.-+..||+||.--...|.-||.
T Consensus 9 ~kErEnnk~RERrRRAIaakIfaGLR~ 35 (150)
T PF05687_consen 9 WKERENNKRRERRRRAIAAKIFAGLRA 35 (150)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334666778999999544444555544
No 27
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=35.38 E-value=2.1e+02 Score=25.77 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=17.3
Q ss_pred chHhHHHHHHHHHHHHHHHHH
Q 044343 108 DRASVLDDAVNYVKALRHQLE 128 (201)
Q Consensus 108 dKasiL~~AI~YIk~Lq~~v~ 128 (201)
+.++-|++=|.|+|+|=..+.
T Consensus 269 ~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 269 DQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999998865553
No 28
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.16 E-value=45 Score=23.92 Aligned_cols=23 Identities=13% Similarity=0.391 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC
Q 044343 113 LDDAVNYVKALRHQLEMMSAQGG 135 (201)
Q Consensus 113 L~~AI~YIk~Lq~~v~~l~~~~~ 135 (201)
++.||+-|.-||..+.+|..++.
T Consensus 13 iqqAvdTI~LLQmEieELKEknn 35 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNN 35 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 56788888888888888887764
No 29
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=32.53 E-value=39 Score=27.38 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhcCCCCCcchHhHHHHHHHHHH
Q 044343 89 RINKRLKSLKELVPNCNKSDRASVLDDAVNYVK 121 (201)
Q Consensus 89 ~in~~~~~Lr~lvP~~~K~dKasiL~~AI~YIk 121 (201)
-|-++|..|+++||+..+..-..+...++.++|
T Consensus 50 Tl~ERi~ALkDm~Pp~~R~~i~~~~s~t~s~~k 82 (145)
T TIGR00986 50 TFTDRIYALKDIVPPTTRGWIYHKYSTTTNFVK 82 (145)
T ss_pred cHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 366779999999996553333333333344433
No 30
>PF15392 Joubert: Joubert syndrome-associated
Probab=32.45 E-value=1.3e+02 Score=27.51 Aligned_cols=30 Identities=27% Similarity=0.426 Sum_probs=25.5
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHhhcC
Q 044343 73 THSAEVHNQSERRRRDRINKRLKSLKELVP 102 (201)
Q Consensus 73 ~~~~~~H~~~ER~RR~~in~~~~~Lr~lvP 102 (201)
+.+++....+.|+||+||.+.+..|.++--
T Consensus 54 kERrEIq~WMkRKrkERmaEYl~qlaEkR~ 83 (329)
T PF15392_consen 54 KERREIQAWMKRKRKERMAEYLKQLAEKRE 83 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445788999999999999999999977753
No 31
>PLN02705 beta-amylase
Probab=31.68 E-value=94 Score=30.96 Aligned_cols=27 Identities=26% Similarity=0.371 Sum_probs=16.8
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHh
Q 044343 73 THSAEVHNQSERRRRDRINKRLKSLKE 99 (201)
Q Consensus 73 ~~~~~~H~~~ER~RR~~in~~~~~Lr~ 99 (201)
.+.|+.....||+||.--...|.-||.
T Consensus 82 ~~e~e~~~~rer~rrai~~ki~aglr~ 108 (681)
T PLN02705 82 EKEKERTKLRERHRRAITSRMLAGLRQ 108 (681)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 334667788999999644444444443
No 32
>PTZ00405 cytochrome c; Provisional
Probab=31.25 E-value=88 Score=23.89 Aligned_cols=39 Identities=15% Similarity=0.371 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhhcCCCC----CcchHhHHHHHHHHHHHHH
Q 044343 86 RRDRINKRLKSLKELVPNCN----KSDRASVLDDAVNYVKALR 124 (201)
Q Consensus 86 RR~~in~~~~~Lr~lvP~~~----K~dKasiL~~AI~YIk~Lq 124 (201)
=.+.|...+..-+.++|... .+.+..-+..-|.||+.|+
T Consensus 71 d~~~L~~~l~~P~~~~pgt~M~f~gl~~~~dr~~liaYL~sl~ 113 (114)
T PTZ00405 71 TPEVLDVYLENPKKFMPGTKMSFAGIKKPQERADVIAYLETLK 113 (114)
T ss_pred CHHHHHHHHHCHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 35678888888889999543 3457777888999999986
No 33
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.12 E-value=1.2e+02 Score=26.21 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCc
Q 044343 113 LDDAVNYVKALRHQLEMMSAQGGAIFQSPFMSPS 146 (201)
Q Consensus 113 L~~AI~YIk~Lq~~v~~l~~~~~~~~~~~~~~~~ 146 (201)
|+++-..||+||.+++.|..+. ...+.|+.+.
T Consensus 57 Lk~a~~~i~eLe~ri~~lq~~~--~~sgsFLs~~ 88 (233)
T COG3416 57 LKKASTQIKELEKRIAILQAGE--AGSGSFLSNA 88 (233)
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCCcchhhhh
Confidence 4455567999999999999763 4456666554
No 34
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=30.11 E-value=1.9e+02 Score=19.94 Aligned_cols=48 Identities=17% Similarity=0.321 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCcchHhHHHHHHHHHHHHHHHHH
Q 044343 80 NQSERRRRDRINKRLKSLKELVPNCNKSDRASVLDDAVNYVKALRHQLE 128 (201)
Q Consensus 80 ~~~ER~RR~~in~~~~~Lr~lvP~~~K~dKasiL~~AI~YIk~Lq~~v~ 128 (201)
....+.=..+++.++..|...+ .....++|..+-.-..|+..|+..++
T Consensus 30 ~~l~~~~~~~~~~~~~~l~~~f-~~~d~~~A~~~~~kLky~~kl~~~ik 77 (78)
T PF07743_consen 30 EELKKEIEERIKELIKELAEAF-DAKDWEEAKEALRKLKYLQKLLEEIK 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-ccCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555677888888888888 33344555544444555555555544
No 35
>PRK13702 replication protein; Provisional
Probab=28.24 E-value=1e+02 Score=22.78 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=29.5
Q ss_pred hhhhHHHHHHH--HHHHHHHHHHHhhcCCCC-----------CcchHhHHHHHHH
Q 044343 77 EVHNQSERRRR--DRINKRLKSLKELVPNCN-----------KSDRASVLDDAVN 118 (201)
Q Consensus 77 ~~H~~~ER~RR--~~in~~~~~Lr~lvP~~~-----------K~dKasiL~~AI~ 118 (201)
.....+||+|. .|..+..++|.-+|++.. .+..|.+|+..|+
T Consensus 22 ~Pls~aErQr~svaRKr~THkei~vfi~n~lK~~L~elc~~~glTQAe~IE~LIe 76 (85)
T PRK13702 22 NPLSAAEKQRASVARKRATHKEIKVFIQNPLKDKLMELCEEEGLTQAEMIERLIE 76 (85)
T ss_pred CCCCHHHHHHHHHHHHHHhhhhhheeecHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 45778888876 456677788888888643 3467777766664
No 36
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=27.69 E-value=64 Score=26.21 Aligned_cols=57 Identities=11% Similarity=0.191 Sum_probs=47.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhcCCCCCcchHhHHHHHHHHHHHHHHHHHHHhhcc
Q 044343 77 EVHNQSERRRRDRINKRLKSLKELVPNCNKSDRASVLDDAVNYVKALRHQLEMMSAQG 134 (201)
Q Consensus 77 ~~H~~~ER~RR~~in~~~~~Lr~lvP~~~K~dKasiL~~AI~YIk~Lq~~v~~l~~~~ 134 (201)
......+...+..+.....+++.++-... .|+++.+..-.+||+.|+++++++....
T Consensus 114 ~~l~~l~~~~~~~~~~i~~~~r~l~~e~~-~d~a~~~~~~~e~~~~~~~~~~~i~~a~ 170 (174)
T COG1076 114 DALKVLGVEIKADQDAIKKAYRKLLSEQH-PDKAAAKGLKLEFIEKLKEKLQEIQEAY 170 (174)
T ss_pred hHHHHhcCchhhhHHHHHHHHHHHHHhcC-HHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 34566777788888899999999997766 7899999888999999999999887644
No 37
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=25.62 E-value=35 Score=30.88 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhhccC
Q 044343 117 VNYVKALRHQLEMMSAQGG 135 (201)
Q Consensus 117 I~YIk~Lq~~v~~l~~~~~ 135 (201)
-+|||.|+.+|..|+.++.
T Consensus 311 KEYVKCLENRVAVLENQNK 329 (348)
T KOG3584|consen 311 KEYVKCLENRVAVLENQNK 329 (348)
T ss_pred hHHHHHHHhHHHHHhcccH
Confidence 3788888888888887663
No 38
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=23.88 E-value=1.9e+02 Score=28.42 Aligned_cols=27 Identities=30% Similarity=0.567 Sum_probs=13.0
Q ss_pred HHHHHHHHHHH-HhhcCCCCCcchHhHH
Q 044343 87 RDRINKRLKSL-KELVPNCNKSDRASVL 113 (201)
Q Consensus 87 R~~in~~~~~L-r~lvP~~~K~dKasiL 113 (201)
..+|++++.++ ..|+|-...-+.+.+|
T Consensus 77 q~EI~KRLn~i~aQl~PfLsqehQqqvl 104 (705)
T KOG0639|consen 77 QTEIAKRLNTICAQLIPFLSQEHQQQVL 104 (705)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 34455555444 2355555544455444
No 39
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=23.75 E-value=65 Score=25.77 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhcCCCC
Q 044343 90 INKRLKSLKELVPNCN 105 (201)
Q Consensus 90 in~~~~~Lr~lvP~~~ 105 (201)
|-++|-.|+++||...
T Consensus 53 l~ERl~aLkdi~P~~~ 68 (137)
T PF04281_consen 53 LLERLWALKDIFPPSV 68 (137)
T ss_pred HHHHHHHHhccCCHHH
Confidence 5667888999998654
No 40
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=23.73 E-value=1e+02 Score=22.44 Aligned_cols=23 Identities=13% Similarity=0.391 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC
Q 044343 113 LDDAVNYVKALRHQLEMMSAQGG 135 (201)
Q Consensus 113 L~~AI~YIk~Lq~~v~~l~~~~~ 135 (201)
++.||+-|.-||.++.+|+.++.
T Consensus 13 IqqAvdtI~LLqmEieELKekn~ 35 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNN 35 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888887654
No 41
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=22.11 E-value=1.2e+02 Score=20.28 Aligned_cols=21 Identities=14% Similarity=0.485 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 044343 111 SVLDDAVNYVKALRHQLEMMS 131 (201)
Q Consensus 111 siL~~AI~YIk~Lq~~v~~l~ 131 (201)
--+++|+.|++.++.|++.|.
T Consensus 31 ~p~~EA~~f~~~ie~qL~~Lt 51 (52)
T PF03791_consen 31 RPFQEAMEFCREIEQQLSSLT 51 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345699999999999998774
No 42
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=21.70 E-value=2.6e+02 Score=24.50 Aligned_cols=14 Identities=21% Similarity=0.392 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhhc
Q 044343 120 VKALRHQLEMMSAQ 133 (201)
Q Consensus 120 Ik~Lq~~v~~l~~~ 133 (201)
||.|+.+|++|+.+
T Consensus 57 L~~a~~ri~eLe~q 70 (247)
T PF09849_consen 57 LKQAQARIQELEAQ 70 (247)
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666666655
No 43
>PF02186 TFIIE_beta: TFIIE beta subunit core domain; InterPro: IPR003166 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This entry represents the beta subunit of the transcription factor TFIIE.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005673 transcription factor TFIIE complex; PDB: 1D8K_A 1D8J_A.
Probab=21.00 E-value=84 Score=21.75 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=13.4
Q ss_pred chHhHHHHHHHHHHHH
Q 044343 108 DRASVLDDAVNYVKAL 123 (201)
Q Consensus 108 dKasiL~~AI~YIk~L 123 (201)
.+.+.|..||+|||.-
T Consensus 2 ~~~tql~~~VeymK~r 17 (65)
T PF02186_consen 2 HKFTQLAKAVEYMKKR 17 (65)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHhc
Confidence 3578899999999975
No 44
>PF13713 BRX_N: Transcription factor BRX N-terminal domain
Probab=20.66 E-value=1.5e+02 Score=18.69 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 044343 114 DDAVNYVKALRHQLEMMSAQG 134 (201)
Q Consensus 114 ~~AI~YIk~Lq~~v~~l~~~~ 134 (201)
..|-++||.|-.|++.|....
T Consensus 8 kaaKe~IKsLt~QlK~maekl 28 (39)
T PF13713_consen 8 KAAKEVIKSLTAQLKDMAEKL 28 (39)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 457799999999999998754
No 45
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=20.29 E-value=1.3e+02 Score=21.23 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 044343 113 LDDAVNYVKALRHQLEMMSAQG 134 (201)
Q Consensus 113 L~~AI~YIk~Lq~~v~~l~~~~ 134 (201)
+..||+-|..||.++.+|..++
T Consensus 13 i~~aveti~~Lq~e~eeLke~n 34 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKN 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888887653
Done!