Query 044343
Match_columns 201
No_of_seqs 261 out of 1238
Neff 6.0
Searched_HMMs 29240
Date Tue Mar 26 00:08:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044343.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044343hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 1.6E-18 5.4E-23 125.6 6.5 63 73-135 4-67 (82)
2 4h10_B Circadian locomoter out 99.7 8.3E-18 2.8E-22 118.8 6.7 60 72-131 5-65 (71)
3 4ati_A MITF, microphthalmia-as 99.7 3.2E-17 1.1E-21 126.3 7.8 66 69-134 21-90 (118)
4 1an4_A Protein (upstream stimu 99.7 7.1E-18 2.4E-22 116.8 2.6 54 74-127 4-63 (65)
5 1a0a_A BHLH, protein (phosphat 99.7 9.1E-18 3.1E-22 116.1 2.1 53 75-127 2-61 (63)
6 4h10_A ARYL hydrocarbon recept 99.7 2E-17 7E-22 117.5 3.5 55 71-125 5-63 (73)
7 1hlo_A Protein (transcription 99.7 7.7E-17 2.6E-21 116.0 6.0 62 74-135 11-74 (80)
8 1nkp_B MAX protein, MYC proto- 99.6 2E-16 6.9E-21 114.4 6.7 60 75-134 2-63 (83)
9 1nkp_A C-MYC, MYC proto-oncoge 99.6 4.5E-16 1.5E-20 114.2 6.7 59 75-133 6-67 (88)
10 3u5v_A Protein MAX, transcript 99.6 4.2E-16 1.4E-20 111.5 5.0 58 75-132 5-66 (76)
11 1nlw_A MAD protein, MAX dimeri 99.6 2E-15 7E-20 108.9 7.5 59 76-134 2-63 (80)
12 1mdy_A Protein (MYOD BHLH doma 99.5 2.9E-14 1E-18 99.9 4.9 55 73-127 10-66 (68)
13 2ql2_B Neurod1, neurogenic dif 99.4 2.1E-13 7.3E-18 93.2 6.2 54 75-128 2-58 (60)
14 4f3l_A Mclock, circadian locom 99.4 6.8E-14 2.3E-18 123.9 1.7 89 72-160 9-99 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 99.4 1E-13 3.6E-18 124.2 2.0 88 71-161 9-100 (387)
16 2lfh_A DNA-binding protein inh 99.1 2.2E-11 7.6E-16 84.9 1.6 46 80-125 19-67 (68)
17 4ath_A MITF, microphthalmia-as 99.0 3.3E-10 1.1E-14 81.8 6.3 46 87-132 4-53 (83)
18 4aya_A DNA-binding protein inh 98.7 3.5E-08 1.2E-12 73.2 6.9 50 82-131 32-84 (97)
19 3muj_A Transcription factor CO 66.4 9.2 0.00031 29.6 5.0 36 88-123 94-133 (138)
20 3lay_A Zinc resistance-associa 51.6 21 0.00073 28.4 5.0 41 86-128 90-130 (175)
21 3fx7_A Putative uncharacterize 43.7 54 0.0018 23.6 5.6 22 113-134 65-86 (94)
22 1pd7_B MAD1; PAH2, SIN3, eukar 41.9 30 0.001 19.1 3.1 20 107-126 2-21 (26)
23 2wt7_A Proto-oncogene protein 40.8 57 0.0019 21.2 5.0 20 79-98 10-29 (63)
24 1xkm_B Distinctin chain B; por 37.2 43 0.0015 18.1 3.1 19 111-129 4-22 (26)
25 1p3q_Q VPS9P, vacuolar protein 37.2 31 0.0011 22.3 3.1 26 81-106 3-28 (54)
26 2jqq_A Conserved oligomeric go 31.2 34 0.0012 27.9 3.1 44 86-130 52-95 (204)
27 2ket_A Cathelicidin-6; antimic 29.1 27 0.00093 19.0 1.5 19 84-102 4-22 (27)
28 1m2x_A Class B carbapenemase B 26.8 70 0.0024 24.6 4.3 31 99-129 191-221 (223)
29 1hwt_C Protein (heme activator 25.6 44 0.0015 22.0 2.5 19 117-135 57-75 (81)
30 2jee_A YIIU; FTSZ, septum, coi 25.6 56 0.0019 22.9 3.0 22 113-134 15-36 (81)
31 2bid_A Protein (BID); programm 25.2 91 0.0031 25.2 4.6 35 78-112 117-151 (197)
32 2er8_A Regulatory protein Leu3 21.7 49 0.0017 21.3 2.1 18 118-135 49-66 (72)
33 1fpo_A HSC20, chaperone protei 21.5 2.1E+02 0.007 22.0 6.0 49 84-133 119-167 (171)
34 3he4_B Synzip5; heterodimeric 21.3 1E+02 0.0035 18.7 3.2 19 113-131 5-23 (46)
35 1pd3_A Nonstructural protein N 20.9 42 0.0014 21.8 1.5 43 85-127 6-49 (58)
36 1f1f_A Cytochrome C6; heme, pr 20.8 1.6E+02 0.0056 18.7 4.7 39 87-126 48-87 (89)
37 1dh3_A Transcription factor CR 20.3 60 0.0021 20.7 2.2 17 118-134 22-38 (55)
38 2fhx_A SPM-1; metallo-beta-lac 20.3 47 0.0016 25.9 2.0 30 99-128 216-245 (246)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.75 E-value=1.6e-18 Score=125.64 Aligned_cols=63 Identities=29% Similarity=0.488 Sum_probs=58.3
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHhhcCCC-CCcchHhHHHHHHHHHHHHHHHHHHHhhccC
Q 044343 73 THSAEVHNQSERRRRDRINKRLKSLKELVPNC-NKSDRASVLDDAVNYVKALRHQLEMMSAQGG 135 (201)
Q Consensus 73 ~~~~~~H~~~ER~RR~~in~~~~~Lr~lvP~~-~K~dKasiL~~AI~YIk~Lq~~v~~l~~~~~ 135 (201)
..++..|+.+||+||++||++|.+|+.+||++ .|++|++||.+||+||++||.+++.|+.++.
T Consensus 4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~ 67 (82)
T 1am9_A 4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENL 67 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999998 6999999999999999999999999987653
No 2
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.72 E-value=8.3e-18 Score=118.85 Aligned_cols=60 Identities=23% Similarity=0.474 Sum_probs=54.5
Q ss_pred CccchhhhhHHHHHHHHHHHHHHHHHHhhcCCCC-CcchHhHHHHHHHHHHHHHHHHHHHh
Q 044343 72 RTHSAEVHNQSERRRRDRINKRLKSLKELVPNCN-KSDRASVLDDAVNYVKALRHQLEMMS 131 (201)
Q Consensus 72 ~~~~~~~H~~~ER~RR~~in~~~~~Lr~lvP~~~-K~dKasiL~~AI~YIk~Lq~~v~~l~ 131 (201)
....|.+|+.+||+||++||++|.+|+.|||.+. |+||++||++||+||++||.++.-|+
T Consensus 5 ~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 5 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3456889999999999999999999999999754 99999999999999999999987664
No 3
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.69 E-value=3.2e-17 Score=126.28 Aligned_cols=66 Identities=30% Similarity=0.533 Sum_probs=52.3
Q ss_pred CCCCccchhhhhHHHHHHHHHHHHHHHHHHhhcCCCC----CcchHhHHHHHHHHHHHHHHHHHHHhhcc
Q 044343 69 RPKRTHSAEVHNQSERRRRDRINKRLKSLKELVPNCN----KSDRASVLDDAVNYVKALRHQLEMMSAQG 134 (201)
Q Consensus 69 ~~~~~~~~~~H~~~ER~RR~~in~~~~~Lr~lvP~~~----K~dKasiL~~AI~YIk~Lq~~v~~l~~~~ 134 (201)
..++..++..|+.+||+||++||++|.+|+.|||.+. |++|++||++||+||++||.+++.|....
T Consensus 21 ~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~ 90 (118)
T 4ati_A 21 LAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 90 (118)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556788999999999999999999999999875 78999999999999999999999998654
No 4
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.68 E-value=7.1e-18 Score=116.82 Aligned_cols=54 Identities=31% Similarity=0.638 Sum_probs=49.8
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHhhcCCCC------CcchHhHHHHHHHHHHHHHHHH
Q 044343 74 HSAEVHNQSERRRRDRINKRLKSLKELVPNCN------KSDRASVLDDAVNYVKALRHQL 127 (201)
Q Consensus 74 ~~~~~H~~~ER~RR~~in~~~~~Lr~lvP~~~------K~dKasiL~~AI~YIk~Lq~~v 127 (201)
.++..|+.+||+||++||++|.+|+.|||.+. |++|++||++||+||++||+++
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 35678999999999999999999999999876 7899999999999999999865
No 5
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.67 E-value=9.1e-18 Score=116.11 Aligned_cols=53 Identities=26% Similarity=0.515 Sum_probs=48.2
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHhhcCCC-------CCcchHhHHHHHHHHHHHHHHHH
Q 044343 75 SAEVHNQSERRRRDRINKRLKSLKELVPNC-------NKSDRASVLDDAVNYVKALRHQL 127 (201)
Q Consensus 75 ~~~~H~~~ER~RR~~in~~~~~Lr~lvP~~-------~K~dKasiL~~AI~YIk~Lq~~v 127 (201)
++.+|+.+||+||++||.+|.+|+.|||.+ .|.+||+||++||+||++||+++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 367899999999999999999999999965 36789999999999999999865
No 6
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.67 E-value=2e-17 Score=117.51 Aligned_cols=55 Identities=42% Similarity=0.661 Sum_probs=50.5
Q ss_pred CCccchhhhhHHHHHHHHHHHHHHHHHHhhcCCC----CCcchHhHHHHHHHHHHHHHH
Q 044343 71 KRTHSAEVHNQSERRRRDRINKRLKSLKELVPNC----NKSDRASVLDDAVNYVKALRH 125 (201)
Q Consensus 71 ~~~~~~~~H~~~ER~RR~~in~~~~~Lr~lvP~~----~K~dKasiL~~AI~YIk~Lq~ 125 (201)
+..+++..|+.+||+||++||++|.+|+.|||.| .|+||++||+.||+|||.|+.
T Consensus 5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 4456788999999999999999999999999976 599999999999999999974
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.66 E-value=7.7e-17 Score=116.00 Aligned_cols=62 Identities=32% Similarity=0.533 Sum_probs=57.5
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHhhcCCC--CCcchHhHHHHHHHHHHHHHHHHHHHhhccC
Q 044343 74 HSAEVHNQSERRRRDRINKRLKSLKELVPNC--NKSDRASVLDDAVNYVKALRHQLEMMSAQGG 135 (201)
Q Consensus 74 ~~~~~H~~~ER~RR~~in~~~~~Lr~lvP~~--~K~dKasiL~~AI~YIk~Lq~~v~~l~~~~~ 135 (201)
..+..|+.+||+||..||++|..|+.+||.+ .|++|++||..||+||++|+.+++.|..+..
T Consensus 11 ~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~ 74 (80)
T 1hlo_A 11 DKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDID 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999986 4999999999999999999999999987654
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.65 E-value=2e-16 Score=114.42 Aligned_cols=60 Identities=33% Similarity=0.548 Sum_probs=55.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHhhcCCC--CCcchHhHHHHHHHHHHHHHHHHHHHhhcc
Q 044343 75 SAEVHNQSERRRRDRINKRLKSLKELVPNC--NKSDRASVLDDAVNYVKALRHQLEMMSAQG 134 (201)
Q Consensus 75 ~~~~H~~~ER~RR~~in~~~~~Lr~lvP~~--~K~dKasiL~~AI~YIk~Lq~~v~~l~~~~ 134 (201)
+|..||.+||+||++||++|.+|+.+||.+ .|++|++||..||+||++|+.+++.|+.+.
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~ 63 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999985 599999999999999999999988887654
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.62 E-value=4.5e-16 Score=114.16 Aligned_cols=59 Identities=20% Similarity=0.473 Sum_probs=54.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHhhcCCC---CCcchHhHHHHHHHHHHHHHHHHHHHhhc
Q 044343 75 SAEVHNQSERRRRDRINKRLKSLKELVPNC---NKSDRASVLDDAVNYVKALRHQLEMMSAQ 133 (201)
Q Consensus 75 ~~~~H~~~ER~RR~~in~~~~~Lr~lvP~~---~K~dKasiL~~AI~YIk~Lq~~v~~l~~~ 133 (201)
.|..||.+||+||+.||++|..|+.+||.. .|++|++||.+||+||++|+.+++.+..+
T Consensus 6 ~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~ 67 (88)
T 1nkp_A 6 KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISE 67 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999975 49999999999999999999998877643
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.61 E-value=4.2e-16 Score=111.50 Aligned_cols=58 Identities=26% Similarity=0.404 Sum_probs=49.8
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHhhcCC---CCCc-chHhHHHHHHHHHHHHHHHHHHHhh
Q 044343 75 SAEVHNQSERRRRDRINKRLKSLKELVPN---CNKS-DRASVLDDAVNYVKALRHQLEMMSA 132 (201)
Q Consensus 75 ~~~~H~~~ER~RR~~in~~~~~Lr~lvP~---~~K~-dKasiL~~AI~YIk~Lq~~v~~l~~ 132 (201)
+|..||.+||+||+.||++|.+|+.+||. ..|. +|++||..||+||++||+++++++.
T Consensus 5 rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 5 KRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57789999999999999999999999995 3365 7999999999999999999998874
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.60 E-value=2e-15 Score=108.87 Aligned_cols=59 Identities=29% Similarity=0.318 Sum_probs=54.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhcCCC---CCcchHhHHHHHHHHHHHHHHHHHHHhhcc
Q 044343 76 AEVHNQSERRRRDRINKRLKSLKELVPNC---NKSDRASVLDDAVNYVKALRHQLEMMSAQG 134 (201)
Q Consensus 76 ~~~H~~~ER~RR~~in~~~~~Lr~lvP~~---~K~dKasiL~~AI~YIk~Lq~~v~~l~~~~ 134 (201)
|..||.+||+||+.||++|..|+++||.. .|.+|+.||.+|++||+.|+.+.+.|..+.
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~ 63 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQI 63 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999965 488999999999999999999998887654
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.48 E-value=2.9e-14 Score=99.88 Aligned_cols=55 Identities=22% Similarity=0.450 Sum_probs=50.0
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHhhcCCC--CCcchHhHHHHHHHHHHHHHHHH
Q 044343 73 THSAEVHNQSERRRRDRINKRLKSLKELVPNC--NKSDRASVLDDAVNYVKALRHQL 127 (201)
Q Consensus 73 ~~~~~~H~~~ER~RR~~in~~~~~Lr~lvP~~--~K~dKasiL~~AI~YIk~Lq~~v 127 (201)
...|..||..||+|+..||+.|..|+.+||.. .|++|+.||..||+||++|++.+
T Consensus 10 ~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 10 ADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34577899999999999999999999999975 49999999999999999999765
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.43 E-value=2.1e-13 Score=93.25 Aligned_cols=54 Identities=31% Similarity=0.395 Sum_probs=49.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHhhcCCCC---CcchHhHHHHHHHHHHHHHHHHH
Q 044343 75 SAEVHNQSERRRRDRINKRLKSLKELVPNCN---KSDRASVLDDAVNYVKALRHQLE 128 (201)
Q Consensus 75 ~~~~H~~~ER~RR~~in~~~~~Lr~lvP~~~---K~dKasiL~~AI~YIk~Lq~~v~ 128 (201)
+|..||..||+|+..||+.|..|+.+||... |++|..||..||+||++|++.++
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 3667999999999999999999999999753 99999999999999999998653
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.38 E-value=6.8e-14 Score=123.94 Aligned_cols=89 Identities=19% Similarity=0.359 Sum_probs=63.2
Q ss_pred CccchhhhhHHHHHHHHHHHHHHHHHHhhcC-CCCCcchHhHHHHHHHHHHHHHHHHHHHh-hccCCCCCCCCCCCccCC
Q 044343 72 RTHSAEVHNQSERRRRDRINKRLKSLKELVP-NCNKSDRASVLDDAVNYVKALRHQLEMMS-AQGGAIFQSPFMSPSGHQ 149 (201)
Q Consensus 72 ~~~~~~~H~~~ER~RR~~in~~~~~Lr~lvP-~~~K~dKasiL~~AI~YIk~Lq~~v~~l~-~~~~~~~~~~~~~~~~~~ 149 (201)
...++..|+.+||+||++||..|.+|+.||| ...|+||++||+.||+|||.|+....... .+....++|+++...++.
T Consensus 9 ~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (361)
T 4f3l_A 9 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETTAQSDASEIRQDWKPTFLSNEEFT 88 (361)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHHTSCSCGGGTSCCSCTTSCHHHHH
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhcccccccccccccCcccccHHHHH
Confidence 3445778999999999999999999999999 45599999999999999999986543211 223356788888877777
Q ss_pred CcccCCCCCCC
Q 044343 150 STEVPQISPNV 160 (201)
Q Consensus 150 ~l~~~~~~~f~ 160 (201)
++.+.++++|+
T Consensus 89 ~~~l~a~~~~i 99 (361)
T 4f3l_A 89 QLMLEALDGFF 99 (361)
T ss_dssp HHHHHHTTEEE
T ss_pred HHHHHhcCceE
Confidence 77767776664
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.37 E-value=1e-13 Score=124.16 Aligned_cols=88 Identities=28% Similarity=0.377 Sum_probs=69.5
Q ss_pred CCccchhhhhHHHHHHHHHHHHHHHHHHhhcC----CCCCcchHhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCc
Q 044343 71 KRTHSAEVHNQSERRRRDRINKRLKSLKELVP----NCNKSDRASVLDDAVNYVKALRHQLEMMSAQGGAIFQSPFMSPS 146 (201)
Q Consensus 71 ~~~~~~~~H~~~ER~RR~~in~~~~~Lr~lvP----~~~K~dKasiL~~AI~YIk~Lq~~v~~l~~~~~~~~~~~~~~~~ 146 (201)
|...++.+|+.+||+||++||+.|.+|+.||| ...|+||++||+.||+|||.|+....... ...+.|.++...
T Consensus 9 ~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~ 85 (387)
T 4f3l_B 9 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGATNPYT---EANYKPTFLSDD 85 (387)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC---------CCSSCTTSCHH
T ss_pred hhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhccccccc---ccccCcccCCHH
Confidence 34556889999999999999999999999999 45699999999999999999985433222 245678888888
Q ss_pred cCCCcccCCCCCCCC
Q 044343 147 GHQSTEVPQISPNVP 161 (201)
Q Consensus 147 ~~~~l~~~~~~~f~p 161 (201)
++.++.+.++++|+-
T Consensus 86 ~~~~~ll~~~~gfi~ 100 (387)
T 4f3l_B 86 ELKHLILRAADGFLF 100 (387)
T ss_dssp HHHHHHHHTCCSEEE
T ss_pred HHHHHHHhcCCCEEE
Confidence 888888888887753
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.08 E-value=2.2e-11 Score=84.89 Aligned_cols=46 Identities=22% Similarity=0.409 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCC---CCcchHhHHHHHHHHHHHHHH
Q 044343 80 NQSERRRRDRINKRLKSLKELVPNC---NKSDRASVLDDAVNYVKALRH 125 (201)
Q Consensus 80 ~~~ER~RR~~in~~~~~Lr~lvP~~---~K~dKasiL~~AI~YIk~Lq~ 125 (201)
+..||+|+..||++|..||.+||.. .|++|..||+.||+||+.||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 4778999999999999999999975 399999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=99.04 E-value=3.3e-10 Score=81.82 Aligned_cols=46 Identities=28% Similarity=0.585 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhhcCCCC----CcchHhHHHHHHHHHHHHHHHHHHHhh
Q 044343 87 RDRINKRLKSLKELVPNCN----KSDRASVLDDAVNYVKALRHQLEMMSA 132 (201)
Q Consensus 87 R~~in~~~~~Lr~lvP~~~----K~dKasiL~~AI~YIk~Lq~~v~~l~~ 132 (201)
|..||++|.+|..|||.+. |.+|++||.+||+||++||+.++.+..
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e 53 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD 53 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999753 889999999999999999987776654
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.69 E-value=3.5e-08 Score=73.19 Aligned_cols=50 Identities=24% Similarity=0.365 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC---CCcchHhHHHHHHHHHHHHHHHHHHHh
Q 044343 82 SERRRRDRINKRLKSLKELVPNC---NKSDRASVLDDAVNYVKALRHQLEMMS 131 (201)
Q Consensus 82 ~ER~RR~~in~~~~~Lr~lvP~~---~K~dKasiL~~AI~YIk~Lq~~v~~l~ 131 (201)
.||.|-..||+.|..||.+||.. .|++|..+|..||+||++|+..++.-.
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~ 84 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHL 84 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45778889999999999999964 389999999999999999998876543
No 19
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=66.44 E-value=9.2 Score=29.57 Aligned_cols=36 Identities=22% Similarity=0.428 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhcCCCC----CcchHhHHHHHHHHHHHH
Q 044343 88 DRINKRLKSLKELVPNCN----KSDRASVLDDAVNYVKAL 123 (201)
Q Consensus 88 ~~in~~~~~Lr~lvP~~~----K~dKasiL~~AI~YIk~L 123 (201)
-.|.-.|..|+++||... ++-|-.||+.|.++++.|
T Consensus 94 PtId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 94 PTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CCHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred CccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 458899999999999643 889999999999998876
No 20
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=51.58 E-value=21 Score=28.38 Aligned_cols=41 Identities=15% Similarity=0.310 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcchHhHHHHHHHHHHHHHHHHH
Q 044343 86 RRDRINKRLKSLKELVPNCNKSDRASVLDDAVNYVKALRHQLE 128 (201)
Q Consensus 86 RR~~in~~~~~Lr~lvP~~~K~dKasiL~~AI~YIk~Lq~~v~ 128 (201)
-|++|...-.+|++|+-. .+.|.+.| +..++=|..|+.++.
T Consensus 90 Lr~ql~akr~EL~aL~~a-~~~DeakI-~aL~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 90 LRQQLISKRYEYNALLTA-SSPDTAKI-NAVAKEMESLGQKLD 130 (175)
T ss_dssp HHHHHHHHHHHHHHHHTS-SSCCHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCCCHHHH-HHHHHHHHHHHHHHH
Confidence 356677888899998864 33444443 334444555555543
No 21
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=43.71 E-value=54 Score=23.58 Aligned_cols=22 Identities=9% Similarity=0.167 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 044343 113 LDDAVNYVKALRHQLEMMSAQG 134 (201)
Q Consensus 113 L~~AI~YIk~Lq~~v~~l~~~~ 134 (201)
-+.|=+||.+|+.+++.|+...
T Consensus 65 ~e~a~e~vp~L~~~i~vle~~~ 86 (94)
T 3fx7_A 65 DEAAQEQIAWLKERIRVLEEDY 86 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHhHHHHHHHHHhHHHH
Confidence 3467789999999999998764
No 22
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=41.89 E-value=30 Score=19.13 Aligned_cols=20 Identities=15% Similarity=0.272 Sum_probs=15.7
Q ss_pred cchHhHHHHHHHHHHHHHHH
Q 044343 107 SDRASVLDDAVNYVKALRHQ 126 (201)
Q Consensus 107 ~dKasiL~~AI~YIk~Lq~~ 126 (201)
+.+..+|-+|.+||....++
T Consensus 2 ~~nvq~LLeAAeyLErrEre 21 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRERE 21 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHh
Confidence 45678899999999877653
No 23
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=40.77 E-value=57 Score=21.21 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 044343 79 HNQSERRRRDRINKRLKSLK 98 (201)
Q Consensus 79 H~~~ER~RR~~in~~~~~Lr 98 (201)
..++.++-|.+=.+.+..|.
T Consensus 10 NR~AA~rcR~rKk~~~~~Le 29 (63)
T 2wt7_A 10 NKMAAAKCRNRRRELTDTLQ 29 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 24
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=37.22 E-value=43 Score=18.09 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 044343 111 SVLDDAVNYVKALRHQLEM 129 (201)
Q Consensus 111 siL~~AI~YIk~Lq~~v~~ 129 (201)
+-|-+|-.|+.+|+++++.
T Consensus 4 sgliearkyleqlhrklkn 22 (26)
T 1xkm_B 4 SGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4577888999999988764
No 25
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=37.16 E-value=31 Score=22.32 Aligned_cols=26 Identities=12% Similarity=0.339 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCC
Q 044343 81 QSERRRRDRINKRLKSLKELVPNCNK 106 (201)
Q Consensus 81 ~~ER~RR~~in~~~~~Lr~lvP~~~K 106 (201)
.++|-+|...++-+.+|+.+.|+..+
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD~ 28 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCH
Confidence 56788999999999999999998753
No 26
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=31.20 E-value=34 Score=27.88 Aligned_cols=44 Identities=18% Similarity=0.372 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcchHhHHHHHHHHHHHHHHHHHHH
Q 044343 86 RRDRINKRLKSLKELVPNCNKSDRASVLDDAVNYVKALRHQLEMM 130 (201)
Q Consensus 86 RR~~in~~~~~Lr~lvP~~~K~dKasiL~~AI~YIk~Lq~~v~~l 130 (201)
-|..++.-...|+.|+-..- ...-++...||+|+|.|-.-...|
T Consensus 52 v~~Dl~~F~~QL~qL~~~~i-~~Tre~v~d~l~YLkkLD~l~~~L 95 (204)
T 2jqq_A 52 TQSDLQKFMTQLDHLIKDDI-SNTQEIIKDVLEYLKKLDEIYGSL 95 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-STTHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45557777777777763221 246678899999999886554433
No 27
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=29.13 E-value=27 Score=19.05 Aligned_cols=19 Identities=32% Similarity=0.637 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 044343 84 RRRRDRINKRLKSLKELVP 102 (201)
Q Consensus 84 R~RR~~in~~~~~Lr~lvP 102 (201)
++-|.+++..|..|.-+||
T Consensus 4 krfrkkfkklfkklspvip 22 (27)
T 2ket_A 4 KRFRKKFKKLFKKLSPVIP 22 (27)
T ss_dssp HHHHHHHHHHHHHHSCSCH
T ss_pred HHHHHHHHHHHHhcCcccc
Confidence 4668888888888887776
No 28
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=26.77 E-value=70 Score=24.61 Aligned_cols=31 Identities=3% Similarity=0.172 Sum_probs=20.9
Q ss_pred hhcCCCCCcchHhHHHHHHHHHHHHHHHHHH
Q 044343 99 ELVPNCNKSDRASVLDDAVNYVKALRHQLEM 129 (201)
Q Consensus 99 ~lvP~~~K~dKasiL~~AI~YIk~Lq~~v~~ 129 (201)
.++|.....-....|+.+++|++.+++++++
T Consensus 191 ~i~pgHg~~~~~~~l~~~~~~l~~~~~~~~~ 221 (223)
T 1m2x_A 191 YVVAGHDDWKDQRSIQHTLDLINEYQQKQKA 221 (223)
T ss_dssp EEEESBSCCCSTTHHHHHHHHHHHHHHTC--
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHHHhc
Confidence 3455544322457899999999999988753
No 29
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=25.64 E-value=44 Score=22.04 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHhhccC
Q 044343 117 VNYVKALRHQLEMMSAQGG 135 (201)
Q Consensus 117 I~YIk~Lq~~v~~l~~~~~ 135 (201)
-.||..|+.+++.|+....
T Consensus 57 ~~~~~~L~~ri~~LE~~l~ 75 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLS 75 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4799999999999997653
No 30
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=25.62 E-value=56 Score=22.87 Aligned_cols=22 Identities=14% Similarity=0.403 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 044343 113 LDDAVNYVKALRHQLEMMSAQG 134 (201)
Q Consensus 113 L~~AI~YIk~Lq~~v~~l~~~~ 134 (201)
++.||+-|.-||.++++|..++
T Consensus 15 Iq~avdtI~lLqmEieELKekN 36 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKN 36 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888887665
No 31
>2bid_A Protein (BID); programmed cell death, apoptosis regulation and amplification; NMR {Homo sapiens} SCOP: f.1.4.1
Probab=25.15 E-value=91 Score=25.18 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcCCCCCcchHhH
Q 044343 78 VHNQSERRRRDRINKRLKSLKELVPNCNKSDRASV 112 (201)
Q Consensus 78 ~H~~~ER~RR~~in~~~~~Lr~lvP~~~K~dKasi 112 (201)
+++..|..||..+...+..|-..+|..-..+|+.+
T Consensus 117 N~~lsEEdrr~~LAaaleql~Qt~P~DmeqEKtmL 151 (197)
T 2bid_A 117 NTSRSEEDRNRDLATALEQLLQAYPRDMEKEKTML 151 (197)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHTTSCCSSCSHHHHH
T ss_pred hcCccHHHHHHHHHHHHHHHHHHCCCcHhHHHHHH
Confidence 78999999999999999999999998775566554
No 32
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=21.73 E-value=49 Score=21.35 Aligned_cols=18 Identities=6% Similarity=0.076 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhhccC
Q 044343 118 NYVKALRHQLEMMSAQGG 135 (201)
Q Consensus 118 ~YIk~Lq~~v~~l~~~~~ 135 (201)
.||..|+.+++.|+....
T Consensus 49 ~~~~~Le~ri~~Le~~l~ 66 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLT 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 788888888888876553
No 33
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=21.46 E-value=2.1e+02 Score=22.04 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHhHHHHHHHHHHHHHHHHHHHhhc
Q 044343 84 RRRRDRINKRLKSLKELVPNCNKSDRASVLDDAVNYVKALRHQLEMMSAQ 133 (201)
Q Consensus 84 R~RR~~in~~~~~Lr~lvP~~~K~dKasiL~~AI~YIk~Lq~~v~~l~~~ 133 (201)
..-+.++..+...|...+- ....+.|..+-.-..|+..|+.+++.++..
T Consensus 119 ~~~~~~~~~~~~~l~~~~~-~~~~~~A~~~~~kl~y~~kl~~~i~~~~~~ 167 (171)
T 1fpo_A 119 KRVKKMFDTRHQLMVEQLD-NETWDAAADTCRKLRFLDKLRSSAEQLEEK 167 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777762 335567777767788898999999887754
No 34
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=21.28 E-value=1e+02 Score=18.66 Aligned_cols=19 Identities=16% Similarity=0.396 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 044343 113 LDDAVNYVKALRHQLEMMS 131 (201)
Q Consensus 113 L~~AI~YIk~Lq~~v~~l~ 131 (201)
+.+--+||+.|+.+..+|.
T Consensus 5 vkelknyiqeleernaelk 23 (46)
T 3he4_B 5 VKELKNYIQELEERNAELK 23 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHH
Confidence 4455678888887777665
No 35
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=20.94 E-value=42 Score=21.75 Aligned_cols=43 Identities=12% Similarity=0.336 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCC-CcchHhHHHHHHHHHHHHHHHH
Q 044343 85 RRRDRINKRLKSLKELVPNCN-KSDRASVLDDAVNYVKALRHQL 127 (201)
Q Consensus 85 ~RR~~in~~~~~Lr~lvP~~~-K~dKasiL~~AI~YIk~Lq~~v 127 (201)
+-|+++..+|.+.|-||-.+. ++.+..=-=+-|.|++.||--+
T Consensus 6 kwReqL~qKFEeIRwlIeE~Rh~Lk~TensfeQItfmqalQLll 49 (58)
T 1pd3_A 6 KWREQLGQKFEEIRWLIEEVRHRLKITENSFEQITFMQALQLLL 49 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Confidence 468889999999999987654 2211111124566666666533
No 36
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=20.81 E-value=1.6e+02 Score=18.68 Aligned_cols=39 Identities=15% Similarity=0.270 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhhcCCCC-CcchHhHHHHHHHHHHHHHHH
Q 044343 87 RDRINKRLKSLKELVPNCN-KSDRASVLDDAVNYVKALRHQ 126 (201)
Q Consensus 87 R~~in~~~~~Lr~lvP~~~-K~dKasiL~~AI~YIk~Lq~~ 126 (201)
++.|...+..-...+|... .++... +...+.||+.|..+
T Consensus 48 ~~~l~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~~ 87 (89)
T 1f1f_A 48 VAAVAYQVTNGKNAMPGFNGRLSPLQ-IEDVAAYVVDQAEK 87 (89)
T ss_dssp HHHHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCccccCCCHHH-HHHHHHHHHHHhhc
Confidence 4445444544455677654 455544 57789999998753
No 37
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=20.27 E-value=60 Score=20.69 Aligned_cols=17 Identities=29% Similarity=0.642 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHhhcc
Q 044343 118 NYVKALRHQLEMMSAQG 134 (201)
Q Consensus 118 ~YIk~Lq~~v~~l~~~~ 134 (201)
.||..|+.+|..|+.++
T Consensus 22 ~~~~~LE~~v~~L~~eN 38 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQN 38 (55)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35555555555544433
No 38
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=20.25 E-value=47 Score=25.90 Aligned_cols=30 Identities=3% Similarity=0.196 Sum_probs=22.2
Q ss_pred hhcCCCCCcchHhHHHHHHHHHHHHHHHHH
Q 044343 99 ELVPNCNKSDRASVLDDAVNYVKALRHQLE 128 (201)
Q Consensus 99 ~lvP~~~K~dKasiL~~AI~YIk~Lq~~v~ 128 (201)
.++|+....-....|+++++||+.|+++++
T Consensus 216 ~i~pgHg~~~~~~~l~~~~~~l~~l~~~v~ 245 (246)
T 2fhx_A 216 IVIPGHGEWGGPEMVNKTIKVAEKAVGEMR 245 (246)
T ss_dssp EEEESBSCCBSTHHHHHHHHHHHHHHHHHT
T ss_pred EEECCCCCcCCHHHHHHHHHHHHHHHHHhc
Confidence 455655543346789999999999998874
Done!