BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044344
(587 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S6T|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 V327g Complexed With Pugnac
Length = 575
Score = 272 bits (696), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 163/481 (33%), Positives = 247/481 (51%), Gaps = 55/481 (11%)
Query: 123 VNETYTLSIP---ADASIANLTAHTVWGAMRGLETFSQLVWG---KPNLLVASGLYVWDS 176
++E+Y L + AD A +TA++ +G GLET SQL + +LL+ + + D
Sbjct: 128 MDESYGLRVSPSGADRVNATITANSFFGMRHGLETLSQLFVFDDIRDHLLMVRDVNISDK 187
Query: 177 PLFAHRGLILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAK 236
P++ +RG++LDT+RNYY ++ I RTI+ M+ K+N FHWHITDS SFP V P+L
Sbjct: 188 PVYPYRGILLDTARNYYSIESIKRTIEAMAAVKLNTFHWHITDSQSFPFVTTKRPNLYKF 247
Query: 237 GSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEIDSPGHTGS-WAEAYPEIVTCANKFWWPA 295
G+ Y+ ++++V FGL GVRVLPE D+P H G W + ++ C W +
Sbjct: 248 GALSPQKVYTKAAIREVVRFGLERGVRVLPEFDAPAHVGEGWQDT--DLTVCFKAEPWKS 305
Query: 296 ESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNLFPEA-FYHAGADEIIPGCWKAD 354
EP G LNP + Y+ L+++ +D+ +F +H G DE+ CW +
Sbjct: 306 -------YCGEPPCGQLNPTKDELYQYLEDIYSDMAEVFDTTDIFHMGGDEVSEACWNSS 358
Query: 355 STIQSF-LSNGGTLSQLLEKFV---------GSTLPYIVFFNRT-VVYWEDVLLDDNVNV 403
+IQ+F + N L + E F+ Y F + ++ W L N
Sbjct: 359 DSIQNFMMQNRWDLDK--ESFLKLWNYFQQKAQDKAYKAFGKKLPLILWTSTLT--NYKH 414
Query: 404 RPSFLPKEHTILQTWNNGPN-NTKRIVDAGYRAIVSSSEFYYLDCGHGDFLGNDSQYDQL 462
+L K+ I+Q W G + K +++ GYR I+S+ + Y DCG+G ++G
Sbjct: 415 IDDYLNKDDYIIQVWTTGVDPQIKGLLEKGYRLIMSNYDALYFDCGYGAWVG-------- 466
Query: 463 QPSSSANNGGSWCGPFKTWQTIYDYDITYGLSEEEAKMVIGGEVALWSEQADPKVLDVRL 522
G +WC P+ WQ +YD ++ E V+GGE ALWSEQ+D LD RL
Sbjct: 467 -------AGNNWCSPYIGWQKVYDNSPAV-IALEHRDQVLGGEAALWSEQSDTSTLDGRL 518
Query: 523 WPRTSAMAETLWSGNRDEETGIKRYAQATDRLNEWRYRMVSRGVGAEPIQPLWCLRNPGM 582
WPR +A+AE LW+ + A R+ R R+V G+ AE +QP WC +N G
Sbjct: 519 WPRAAALAERLWA------EPATSWQDAEYRMLHIRERLVRMGIQAESLQPEWCYQNEGY 572
Query: 583 C 583
C
Sbjct: 573 C 573
>pdb|3NSM|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 From Ostrinia Furnacalis
pdb|3NSN|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Tmg-Chitotriomycin
pdb|3OZP|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Pugnac
pdb|3OZO|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Ngt
Length = 572
Score = 272 bits (695), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 163/481 (33%), Positives = 247/481 (51%), Gaps = 55/481 (11%)
Query: 123 VNETYTLSIP---ADASIANLTAHTVWGAMRGLETFSQLVWG---KPNLLVASGLYVWDS 176
++E+Y L + AD A +TA++ +G GLET SQL + +LL+ + + D
Sbjct: 125 MDESYGLRVSPSGADRVNATITANSFFGMRHGLETLSQLFVFDDIRDHLLMVRDVNISDK 184
Query: 177 PLFAHRGLILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAK 236
P++ +RG++LDT+RNYY ++ I RTI+ M+ K+N FHWHITDS SFP V P+L
Sbjct: 185 PVYPYRGILLDTARNYYSIESIKRTIEAMAAVKLNTFHWHITDSQSFPFVTTKRPNLYKF 244
Query: 237 GSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEIDSPGHTGS-WAEAYPEIVTCANKFWWPA 295
G+ Y+ ++++V FGL GVRVLPE D+P H G W + ++ C W +
Sbjct: 245 GALSPQKVYTKAAIREVVRFGLERGVRVLPEFDAPAHVGEGWQDT--DLTVCFKAEPWKS 302
Query: 296 ESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNLFPEA-FYHAGADEIIPGCWKAD 354
EP G LNP + Y+ L+++ +D+ +F +H G DE+ CW +
Sbjct: 303 -------YCVEPPCGQLNPTKDELYQYLEDIYSDMAEVFDTTDIFHMGGDEVSEACWNSS 355
Query: 355 STIQSF-LSNGGTLSQLLEKFV---------GSTLPYIVFFNRT-VVYWEDVLLDDNVNV 403
+IQ+F + N L + E F+ Y F + ++ W L N
Sbjct: 356 DSIQNFMMQNRWDLDK--ESFLKLWNYFQQKAQDKAYKAFGKKLPLILWTSTLT--NYKH 411
Query: 404 RPSFLPKEHTILQTWNNGPN-NTKRIVDAGYRAIVSSSEFYYLDCGHGDFLGNDSQYDQL 462
+L K+ I+Q W G + K +++ GYR I+S+ + Y DCG+G ++G
Sbjct: 412 IDDYLNKDDYIIQVWTTGVDPQIKGLLEKGYRLIMSNYDALYFDCGYGAWVG-------- 463
Query: 463 QPSSSANNGGSWCGPFKTWQTIYDYDITYGLSEEEAKMVIGGEVALWSEQADPKVLDVRL 522
G +WC P+ WQ +YD ++ E V+GGE ALWSEQ+D LD RL
Sbjct: 464 -------AGNNWCSPYIGWQKVYDNSPAV-IALEHRDQVLGGEAALWSEQSDTSTLDGRL 515
Query: 523 WPRTSAMAETLWSGNRDEETGIKRYAQATDRLNEWRYRMVSRGVGAEPIQPLWCLRNPGM 582
WPR +A+AE LW+ + A R+ R R+V G+ AE +QP WC +N G
Sbjct: 516 WPRAAALAERLWA------EPATSWQDAEYRMLHIRERLVRMGIQAESLQPEWCYQNEGY 569
Query: 583 C 583
C
Sbjct: 570 C 570
>pdb|3VTR|A Chain A, Crystal Structure Of Insect Beta-n-acetyl-d-hexosaminidase
Ofhex1 E328a Complexed With Tmg-chitotriomycin
Length = 572
Score = 265 bits (677), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 161/481 (33%), Positives = 244/481 (50%), Gaps = 55/481 (11%)
Query: 123 VNETYTLSIP---ADASIANLTAHTVWGAMRGLETFSQLVWG---KPNLLVASGLYVWDS 176
++E+Y L + AD A +TA++ +G GLET SQL + +LL+ + + D
Sbjct: 125 MDESYGLRVSPSGADRVNATITANSFFGMRHGLETLSQLFVFDDIRDHLLMVRDVNISDK 184
Query: 177 PLFAHRGLILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAK 236
P++ +RG++LDT+RNYY ++ I RTI+ M+ K+N HWHITDS SFP V P+L
Sbjct: 185 PVYPYRGILLDTARNYYSIESIKRTIEAMAAVKLNTNHWHITDSQSFPFVTTKRPNLYKF 244
Query: 237 GSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEIDSPGHTGS-WAEAYPEIVTCANKFWWPA 295
G+ Y+ ++++V FGL GVRVLPE D+P H G W + ++ C W +
Sbjct: 245 GALSPQKVYTKAAIREVVRFGLERGVRVLPEFDAPAHVGEGWQDT--DLTVCFKAEPWKS 302
Query: 296 ESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNLFPEA-FYHAGADEIIPGCWKAD 354
P G LNP + Y+ L+++ +D+ +F +H G DE+ CW +
Sbjct: 303 -------YCVAPPCGQLNPTKDELYQYLEDIYSDMAEVFDTTDIFHMGGDEVSEACWNSS 355
Query: 355 STIQSF-LSNGGTLSQLLEKFV---------GSTLPYIVFFNRT-VVYWEDVLLDDNVNV 403
+IQ+F + N L + E F+ Y F + ++ W L N
Sbjct: 356 DSIQNFMMQNRWDLDK--ESFLKLWNYFQQKAQDKAYKAFGKKLPLILWTSTLT--NYKH 411
Query: 404 RPSFLPKEHTILQTWNNGPN-NTKRIVDAGYRAIVSSSEFYYLDCGHGDFLGNDSQYDQL 462
+L K+ I+Q W G + K +++ GYR I+S+ + Y DCG+G ++G
Sbjct: 412 IDDYLNKDDYIIQVWTTGVDPQIKGLLEKGYRLIMSNYDALYFDCGYGAWVG-------- 463
Query: 463 QPSSSANNGGSWCGPFKTWQTIYDYDITYGLSEEEAKMVIGGEVALWSEQADPKVLDVRL 522
G +WC P+ WQ +YD ++ E V+GGE ALWSEQ+D LD RL
Sbjct: 464 -------AGNNWCSPYIGWQKVYDNSPAV-IALEHRDQVLGGEAALWSEQSDTSTLDGRL 515
Query: 523 WPRTSAMAETLWSGNRDEETGIKRYAQATDRLNEWRYRMVSRGVGAEPIQPLWCLRNPGM 582
WPR +A+AE LW+ + A R+ R R V G+ AE +QP WC +N G
Sbjct: 516 WPRAAALAERLWA------EPATSWQDAEYRMLHIRERFVRMGIQAESLQPEWCYQNEGY 569
Query: 583 C 583
C
Sbjct: 570 C 570
>pdb|1O7A|A Chain A, Human Beta-Hexosaminidase B
pdb|1O7A|B Chain B, Human Beta-Hexosaminidase B
pdb|1O7A|C Chain C, Human Beta-Hexosaminidase B
pdb|1O7A|D Chain D, Human Beta-Hexosaminidase B
pdb|1O7A|E Chain E, Human Beta-Hexosaminidase B
pdb|1O7A|F Chain F, Human Beta-Hexosaminidase B
Length = 515
Score = 263 bits (672), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 173/552 (31%), Positives = 268/552 (48%), Gaps = 86/552 (15%)
Query: 51 PRANLLSPSFAISSPKHFYLSSAANR------------------YLKLIKNEHHQPLVTP 92
P + ++P+ +P++FY+S + N Y+ HH+P
Sbjct: 19 PLSVKMTPNLLHLAPENFYISHSPNSTAGPSCTLLEEAFRRYHGYIFGFYKWHHEP---- 74
Query: 93 SLINITTSSSSALHTLFITVESLLTPLQHGVNETYTLSIPADASIANLTAHTVWGAMRGL 152
+ T L ++ + E P +E+YTL + +A L A+ VWGA+RGL
Sbjct: 75 AEFQAKTQVQQLLVSITLQSECDAFP-NISSDESYTLLV--KEPVAVLKANRVWGALRGL 131
Query: 153 ETFSQLVWGKP-NLLVASGLYVWDSPLFAHRGLILDTSRNYYGVDDILRTIKTMSFNKMN 211
ETFSQLV+ + + DSP F+HRG+++DTSR+Y V IL+T+ M+FNK N
Sbjct: 132 ETFSQLVYQDSYGTFTINESTIIDSPRFSHRGILIDTSRHYLPVKIILKTLDAMAFNKFN 191
Query: 212 VFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEIDSP 271
V HWHI D SFP + P+L+ KGSY Y+P+DV+ ++E+ G+RVLPE D+P
Sbjct: 192 VLHWHIVDDQSFPYQSITFPELSNKGSYSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTP 251
Query: 272 GHTGSWAEAYPEIVT-CANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDI 330
GHT SW + +++T C ++ N+L S G +NP TY L +I
Sbjct: 252 GHTLSWGKGQKDLLTPCYSR---------QNKLDS---FGPINPTLNTTYSFLTTFFKEI 299
Query: 331 VNLFPEAFYHAGADEIIPGCWKADSTIQSFLSNGG---TLSQLLEKFVGSTLPYIVFFNR 387
+FP+ F H G DE+ CW+++ IQ F+ G +L ++ L I N+
Sbjct: 300 SEVFPDQFIHLGGDEVEFKCWESNPKIQDFMRQKGFGTDFKKLESFYIQKVLDIIATINK 359
Query: 388 TVVYWEDVLLDDNVNVRPSFLPKEHTILQTWNNG--PNNTKRIVDAGYRAIVSSSEFYYL 445
+ W++V DD + P TI++ W + P R+ +G+ I+S+ +YL
Sbjct: 360 GSIVWQEV-FDDKAKLAPG------TIVEVWKDSAYPEELSRVTASGFPVILSAP--WYL 410
Query: 446 DCGHGDFLGND-SQYDQLQPSSSANNGGSWCGPFKTWQTIYDYDITYGLSEEEAKMVIGG 504
D G D +Y +++P + +G ++++ ++ IGG
Sbjct: 411 DLIS---YGQDWRKYYKVEP------------------------LDFGGTQKQKQLFIGG 443
Query: 505 EVALWSEQADPKVLDVRLWPRTSAMAETLWSGNRDEETGIKRYAQATDRLNEWRYRMVSR 564
E LW E D L RLWPR SA+ E LWS ++ A DRL R RMV R
Sbjct: 444 EACLWGEYVDATNLTPRLWPRASAVGERLWSSK-----DVRDMDDAYDRLTRHRCRMVER 498
Query: 565 GVGAEPIQPLWC 576
G+ A+P+ +C
Sbjct: 499 GIAAQPLYAGYC 510
>pdb|3LMY|A Chain A, The Crystal Structure Of Beta-Hexosaminidase B In Complex
With Pyrimethamine
pdb|3LMY|B Chain B, The Crystal Structure Of Beta-Hexosaminidase B In Complex
With Pyrimethamine
Length = 556
Score = 263 bits (671), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 173/552 (31%), Positives = 268/552 (48%), Gaps = 86/552 (15%)
Query: 51 PRANLLSPSFAISSPKHFYLSSAANR------------------YLKLIKNEHHQPLVTP 92
P + ++P+ +P++FY+S + N Y+ HH+P
Sbjct: 60 PLSVKMTPNLLHLAPENFYISHSPNSTAGPSCTLLEEAFRRYHGYIFGFYKWHHEP---- 115
Query: 93 SLINITTSSSSALHTLFITVESLLTPLQHGVNETYTLSIPADASIANLTAHTVWGAMRGL 152
+ T L ++ + E P +E+YTL + +A L A+ VWGA+RGL
Sbjct: 116 AEFQAKTQVQQLLVSITLQSECDAFP-NISSDESYTLLV--KEPVAVLKANRVWGALRGL 172
Query: 153 ETFSQLVWGKP-NLLVASGLYVWDSPLFAHRGLILDTSRNYYGVDDILRTIKTMSFNKMN 211
ETFSQLV+ + + DSP F+HRG+++DTSR+Y V IL+T+ M+FNK N
Sbjct: 173 ETFSQLVYQDSYGTFTINESTIIDSPRFSHRGILIDTSRHYLPVKIILKTLDAMAFNKFN 232
Query: 212 VFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEIDSP 271
V HWHI D SFP + P+L+ KGSY Y+P+DV+ ++E+ G+RVLPE D+P
Sbjct: 233 VLHWHIVDDQSFPYQSITFPELSNKGSYSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTP 292
Query: 272 GHTGSWAEAYPEIVT-CANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDI 330
GHT SW + +++T C ++ N+L S G +NP TY L +I
Sbjct: 293 GHTLSWGKGQKDLLTPCYSR---------QNKLDS---FGPINPTLNTTYSFLTTFFKEI 340
Query: 331 VNLFPEAFYHAGADEIIPGCWKADSTIQSFLSNGG---TLSQLLEKFVGSTLPYIVFFNR 387
+FP+ F H G DE+ CW+++ IQ F+ G +L ++ L I N+
Sbjct: 341 SEVFPDQFIHLGGDEVEFKCWESNPKIQDFMRQKGFGTDFKKLESFYIQKVLDIIATINK 400
Query: 388 TVVYWEDVLLDDNVNVRPSFLPKEHTILQTWNNG--PNNTKRIVDAGYRAIVSSSEFYYL 445
+ W++V DD + P TI++ W + P R+ +G+ I+S+ +YL
Sbjct: 401 GSIVWQEV-FDDKAKLAPG------TIVEVWKDSAYPEELSRVTASGFPVILSAP--WYL 451
Query: 446 DCGHGDFLGND-SQYDQLQPSSSANNGGSWCGPFKTWQTIYDYDITYGLSEEEAKMVIGG 504
D G D +Y +++P + +G ++++ ++ IGG
Sbjct: 452 DLIS---YGQDWRKYYKVEP------------------------LDFGGTQKQKQLFIGG 484
Query: 505 EVALWSEQADPKVLDVRLWPRTSAMAETLWSGNRDEETGIKRYAQATDRLNEWRYRMVSR 564
E LW E D L RLWPR SA+ E LWS ++ A DRL R RMV R
Sbjct: 485 EACLWGEYVDATNLTPRLWPRASAVGERLWSSK-----DVRDMDDAYDRLTRHRCRMVER 539
Query: 565 GVGAEPIQPLWC 576
G+ A+P+ +C
Sbjct: 540 GIAAQPLYAGYC 551
>pdb|1NOU|A Chain A, Native Human Lysosomal Beta-Hexosaminidase Isoform B
pdb|1NOU|B Chain B, Native Human Lysosomal Beta-Hexosaminidase Isoform B
pdb|1NOW|A Chain A, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With (2r,3r,
4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride
(Galnac-Isofagomine)
pdb|1NOW|B Chain B, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With (2r,3r,
4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride
(Galnac-Isofagomine)
pdb|1NP0|A Chain A, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With Intermediate Analogue Nag-Thiazoline
pdb|1NP0|B Chain B, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With Intermediate Analogue Nag-Thiazoline
pdb|2GJX|B Chain B, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|C Chain C, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|F Chain F, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|G Chain G, Crystallographic Structure Of Human Beta-Hexosaminidase A
Length = 507
Score = 263 bits (671), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 173/552 (31%), Positives = 268/552 (48%), Gaps = 86/552 (15%)
Query: 51 PRANLLSPSFAISSPKHFYLSSAANR------------------YLKLIKNEHHQPLVTP 92
P + ++P+ +P++FY+S + N Y+ HH+P
Sbjct: 11 PLSVKMTPNLLHLAPENFYISHSPNSTAGPSCTLLEEAFRRYHGYIFGFYKWHHEP---- 66
Query: 93 SLINITTSSSSALHTLFITVESLLTPLQHGVNETYTLSIPADASIANLTAHTVWGAMRGL 152
+ T L ++ + E P +E+YTL + +A L A+ VWGA+RGL
Sbjct: 67 AEFQAKTQVQQLLVSITLQSECDAFP-NISSDESYTLLV--KEPVAVLKANRVWGALRGL 123
Query: 153 ETFSQLVWGKP-NLLVASGLYVWDSPLFAHRGLILDTSRNYYGVDDILRTIKTMSFNKMN 211
ETFSQLV+ + + DSP F+HRG+++DTSR+Y V IL+T+ M+FNK N
Sbjct: 124 ETFSQLVYQDSYGTFTINESTIIDSPRFSHRGILIDTSRHYLPVKIILKTLDAMAFNKFN 183
Query: 212 VFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEIDSP 271
V HWHI D SFP + P+L+ KGSY Y+P+DV+ ++E+ G+RVLPE D+P
Sbjct: 184 VLHWHIVDDQSFPYQSITFPELSNKGSYSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTP 243
Query: 272 GHTGSWAEAYPEIVT-CANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDI 330
GHT SW + +++T C ++ N+L S G +NP TY L +I
Sbjct: 244 GHTLSWGKGQKDLLTPCYSR---------QNKLDS---FGPINPTLNTTYSFLTTFFKEI 291
Query: 331 VNLFPEAFYHAGADEIIPGCWKADSTIQSFLSNGG---TLSQLLEKFVGSTLPYIVFFNR 387
+FP+ F H G DE+ CW+++ IQ F+ G +L ++ L I N+
Sbjct: 292 SEVFPDQFIHLGGDEVEFKCWESNPKIQDFMRQKGFGTDFKKLESFYIQKVLDIIATINK 351
Query: 388 TVVYWEDVLLDDNVNVRPSFLPKEHTILQTWNNG--PNNTKRIVDAGYRAIVSSSEFYYL 445
+ W++V DD + P TI++ W + P R+ +G+ I+S+ +YL
Sbjct: 352 GSIVWQEV-FDDKAKLAPG------TIVEVWKDSAYPEELSRVTASGFPVILSAP--WYL 402
Query: 446 DCGHGDFLGND-SQYDQLQPSSSANNGGSWCGPFKTWQTIYDYDITYGLSEEEAKMVIGG 504
D G D +Y +++P + +G ++++ ++ IGG
Sbjct: 403 DLIS---YGQDWRKYYKVEP------------------------LDFGGTQKQKQLFIGG 435
Query: 505 EVALWSEQADPKVLDVRLWPRTSAMAETLWSGNRDEETGIKRYAQATDRLNEWRYRMVSR 564
E LW E D L RLWPR SA+ E LWS ++ A DRL R RMV R
Sbjct: 436 EACLWGEYVDATNLTPRLWPRASAVGERLWSSK-----DVRDMDDAYDRLTRHRCRMVER 490
Query: 565 GVGAEPIQPLWC 576
G+ A+P+ +C
Sbjct: 491 GIAAQPLYAGYC 502
>pdb|2GK1|B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|D Chain D, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|F Chain F, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|H Chain H, X-Ray Crystal Structure Of Ngt-Bound Hexa
Length = 503
Score = 263 bits (671), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 173/552 (31%), Positives = 268/552 (48%), Gaps = 86/552 (15%)
Query: 51 PRANLLSPSFAISSPKHFYLSSAANR------------------YLKLIKNEHHQPLVTP 92
P + ++P+ +P++FY+S + N Y+ HH+P
Sbjct: 11 PLSVKMTPNLLHLAPENFYISHSPNSTAGPSCTLLEEAFRRYHGYIFGFYKWHHEP---- 66
Query: 93 SLINITTSSSSALHTLFITVESLLTPLQHGVNETYTLSIPADASIANLTAHTVWGAMRGL 152
+ T L ++ + E P +E+YTL + +A L A+ VWGA+RGL
Sbjct: 67 AEFQAKTQVQQLLVSITLQSECDAFP-NISSDESYTLLV--KEPVAVLKANRVWGALRGL 123
Query: 153 ETFSQLVWGKP-NLLVASGLYVWDSPLFAHRGLILDTSRNYYGVDDILRTIKTMSFNKMN 211
ETFSQLV+ + + DSP F+HRG+++DTSR+Y V IL+T+ M+FNK N
Sbjct: 124 ETFSQLVYQDSYGTFTINESTIIDSPRFSHRGILIDTSRHYLPVKIILKTLDAMAFNKFN 183
Query: 212 VFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEIDSP 271
V HWHI D SFP + P+L+ KGSY Y+P+DV+ ++E+ G+RVLPE D+P
Sbjct: 184 VLHWHIVDDQSFPYQSITFPELSNKGSYSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTP 243
Query: 272 GHTGSWAEAYPEIVT-CANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDI 330
GHT SW + +++T C ++ N+L S G +NP TY L +I
Sbjct: 244 GHTLSWGKGQKDLLTPCYSR---------QNKLDS---FGPINPTLNTTYSFLTTFFKEI 291
Query: 331 VNLFPEAFYHAGADEIIPGCWKADSTIQSFLSNGG---TLSQLLEKFVGSTLPYIVFFNR 387
+FP+ F H G DE+ CW+++ IQ F+ G +L ++ L I N+
Sbjct: 292 SEVFPDQFIHLGGDEVEFKCWESNPKIQDFMRQKGFGTDFKKLESFYIQKVLDIIATINK 351
Query: 388 TVVYWEDVLLDDNVNVRPSFLPKEHTILQTWNNG--PNNTKRIVDAGYRAIVSSSEFYYL 445
+ W++V DD + P TI++ W + P R+ +G+ I+S+ +YL
Sbjct: 352 GSIVWQEV-FDDKAKLAPG------TIVEVWKDSAYPEELSRVTASGFPVILSAP--WYL 402
Query: 446 DCGHGDFLGND-SQYDQLQPSSSANNGGSWCGPFKTWQTIYDYDITYGLSEEEAKMVIGG 504
D G D +Y +++P + +G ++++ ++ IGG
Sbjct: 403 DLIS---YGQDWRKYYKVEP------------------------LDFGGTQKQKQLFIGG 435
Query: 505 EVALWSEQADPKVLDVRLWPRTSAMAETLWSGNRDEETGIKRYAQATDRLNEWRYRMVSR 564
E LW E D L RLWPR SA+ E LWS ++ A DRL R RMV R
Sbjct: 436 EACLWGEYVDATNLTPRLWPRASAVGERLWSSK-----DVRDMDDAYDRLTRHRCRMVER 490
Query: 565 GVGAEPIQPLWC 576
G+ A+P+ +C
Sbjct: 491 GIAAQPLYAGYC 502
>pdb|2GK1|A Chain A, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|C Chain C, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|E Chain E, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|G Chain G, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GJX|A Chain A, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|D Chain D, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|E Chain E, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|H Chain H, Crystallographic Structure Of Human Beta-Hexosaminidase A
Length = 507
Score = 241 bits (615), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 159/466 (34%), Positives = 235/466 (50%), Gaps = 71/466 (15%)
Query: 125 ETYTLSIPADASIANLTAHTVWGAMRGLETFSQLVW-GKPNLLVASGLYVWDSPLFAHRG 183
E YTL+I D + L + TVWGA+RGLETFSQLVW + + D P F HRG
Sbjct: 92 ENYTLTINDDQCL--LLSETVWGALRGLETFSQLVWKSAEGTFFINKTEIEDFPRFPHRG 149
Query: 184 LILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDM 243
L+LDTSR+Y + IL T+ M++NK+NVFHWH+ D SFP + P+L KGSY
Sbjct: 150 LLLDTSRHYLPLSSILDTLDVMAYNKLNVFHWHLVDDPSFPYESFTFPELMRKGSYNPVT 209
Query: 244 Q-YSPDDVKKIVEFGLTHGVRVLPEIDSPGHTGSWAEAYPEIVTCANKFWWPAESNWTNR 302
Y+ DVK+++E+ G+RVL E D+PGHT SW P ++T P S
Sbjct: 210 HIYTAQDVKEVIEYARLRGIRVLAEFDTPGHTLSWGPGIPGLLT-------PCYS----- 257
Query: 303 LASEPGTGHLNPLNP---KTYKILKNVINDIVNLFPEAFYHAGADEIIPGCWKADSTIQS 359
SEP +G P+NP TY+ + ++ ++FP+ + H G DE+ CWK++ IQ
Sbjct: 258 -GSEP-SGTFGPVNPSLNNTYEFMSTFFLEVSSVFPDFYLHLGGDEVDFTCWKSNPEIQD 315
Query: 360 FLSNGG---TLSQLLEKFVGSTLPYIVFFNRTVVYWEDVLLDDNVNVRPSFLPKEHTILQ 416
F+ G QL ++ + L + + + V W++V D+ V ++P TI+Q
Sbjct: 316 FMRKKGFGEDFKQLESFYIQTLLDIVSSYGKGYVVWQEV-FDNKVKIQPD------TIIQ 368
Query: 417 TWN-----NGPNNTKRIVDAGYRAIVSSSEFYYLDCGHGDFLGNDSQYDQLQPSSSANNG 471
W N + + AG+RA++S+ +YL N Y
Sbjct: 369 VWREDIPVNYMKELELVTKAGFRALLSAP--WYL---------NRISY------------ 405
Query: 472 GSWCGPFKTWQTIYDYD-ITYGLSEEEAKMVIGGEVALWSEQADPKVLDVRLWPRTSAMA 530
GP W+ Y + + + + E+ +VIGGE +W E D L RLWPR A+A
Sbjct: 406 ----GP--DWKDFYVVEPLAFEGTPEQKALVIGGEACMWGEYVDNTNLVPRLWPRAGAVA 459
Query: 531 ETLWSGNRDEETGIKRYAQATDRLNEWRYRMVSRGVGAEPIQPLWC 576
E LWS + A +RL+ +R ++ RGV A+P+ +C
Sbjct: 460 ERLWSNKLTSDLTF-----AYERLSHFRCELLRRGVQAQPLNVGFC 500
>pdb|1HP4|A Chain A, Crystal Structure Of Streptomyces Plicatus
Beta-N-Acetylhexosaminidase
pdb|1HP5|A Chain A, Streptomyces Plicatus Beta-N-Acetylhexosaminidase
Complexed With Intermediate Analouge Nag-Thiazoline
pdb|1JAK|A Chain A, Streptomyces Plicatus Beta-N-Acetylhexosaminidase In
Complex With (2r,
3r,4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride (Ifg)
pdb|1M01|A Chain A, Wildtype Streptomyces Plicatus Beta-Hexosaminidase In
Complex With Product (Glcnac)
Length = 512
Score = 111 bits (278), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 118/433 (27%), Positives = 184/433 (42%), Gaps = 75/433 (17%)
Query: 124 NETYTL-SIPADASIANLTAHTVWGAMRGLETFSQLV-------WGKPNLLVASGLYVWD 175
+E Y L S PA +I TA G G++T QL+ +P + +G + D
Sbjct: 97 DEGYRLDSGPAGVTI---TARKAAGLFHGVQTLRQLLPPAVEKDSAQPGPWLVAGGTIED 153
Query: 176 SPLFAHRGLILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAA 235
+P +A R +LD SR+++GVD++ R I ++ K N H H++D + + + S P LA
Sbjct: 154 TPRYAWRSAMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLAT 213
Query: 236 KGSY-----GHDMQYSPDDVKKIVEFGLTHGVRVLPEIDSPGHTGSWAEAYPEIVTCANK 290
G G Y+ + K+IV + + + V+PEID PGHT + +Y E+ C
Sbjct: 214 YGGSTEVGGGPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYAEL-NCDGV 272
Query: 291 FWWPAESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNLFPEAFYHAGADEIIPGC 350
A +T ++ G L TY + +VI ++ L P + H G DE
Sbjct: 273 ----APPLYTG---TKVGFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHIGGDE----- 320
Query: 351 WKADSTIQS-FLSNGGTLSQLLEKFVGSTLPYIVFFNRTVVYWEDVLLDDNVNVRPSFLP 409
A ST ++ F++ F+ P + + +TVV W + + P
Sbjct: 321 --AHSTPKADFVA-----------FMKRVQPIVAKYGKTVVGWHQLAGAE---------P 358
Query: 410 KEHTILQTW------NNGPNNTKRIVDAGYRAIVSSSEFYYLDCGHGDFLGNDSQYDQLQ 463
E ++Q W + G I+S ++ YLD +Y +
Sbjct: 359 VEGALVQYWGLDRTGDAEKAEVAEAARNGTGLILSPADRTYLDM----------KYTKDT 408
Query: 464 PSSSANNGGSWCGPFKTWQTIYDYDITYGLSEEEAKMVIGGEVALWSEQ-ADPKVLDVRL 522
P G SW G + Q YD+D L A V G E LW+E +DP LD
Sbjct: 409 PL-----GLSWAG-YVEVQRSYDWDPAGYLPGAPADAVRGVEAPLWTETLSDPDQLDYMA 462
Query: 523 WPRTSAMAETLWS 535
+PR +AE WS
Sbjct: 463 FPRLPGVAELGWS 475
>pdb|1M04|A Chain A, Mutant Streptomyces Plicatus Beta-Hexosaminidase (D313n)
In Complex With Product (Glcnac)
Length = 512
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 117/433 (27%), Positives = 184/433 (42%), Gaps = 75/433 (17%)
Query: 124 NETYTL-SIPADASIANLTAHTVWGAMRGLETFSQLV-------WGKPNLLVASGLYVWD 175
+E Y L S PA +I TA G G++T QL+ +P + +G + D
Sbjct: 97 DEGYRLDSGPAGVTI---TARKAAGLFHGVQTLRQLLPPAVEKDSAQPGPWLVAGGTIED 153
Query: 176 SPLFAHRGLILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAA 235
+P +A R +LD SR+++GVD++ R I ++ K N H H++D + + + S P LA
Sbjct: 154 TPRYAWRSAMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLAT 213
Query: 236 KGSY-----GHDMQYSPDDVKKIVEFGLTHGVRVLPEIDSPGHTGSWAEAYPEIVTCANK 290
G G Y+ + K+IV + + + V+PEID PGHT + +Y E+ C
Sbjct: 214 YGGSTEVGGGPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYAEL-NCDGV 272
Query: 291 FWWPAESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNLFPEAFYHAGADEIIPGC 350
A +T ++ G L TY + +VI ++ L P + H G +E
Sbjct: 273 ----APPLYTG---TKVGFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHIGGNE----- 320
Query: 351 WKADSTIQS-FLSNGGTLSQLLEKFVGSTLPYIVFFNRTVVYWEDVLLDDNVNVRPSFLP 409
A ST ++ F++ F+ P + + +TVV W + + P
Sbjct: 321 --AHSTPKADFVA-----------FMKRVQPIVAKYGKTVVGWHQLAGAE---------P 358
Query: 410 KEHTILQTW------NNGPNNTKRIVDAGYRAIVSSSEFYYLDCGHGDFLGNDSQYDQLQ 463
E ++Q W + G I+S ++ YLD +Y +
Sbjct: 359 VEGALVQYWGLDRTGDAEKAEVAEAARNGTGLILSPADRTYLDM----------KYTKDT 408
Query: 464 PSSSANNGGSWCGPFKTWQTIYDYDITYGLSEEEAKMVIGGEVALWSEQ-ADPKVLDVRL 522
P G SW G + Q YD+D L A V G E LW+E +DP LD
Sbjct: 409 PL-----GLSWAG-YVEVQRSYDWDPAGYLPGAPADAVRGVEAPLWTETLSDPDQLDYMA 462
Query: 523 WPRTSAMAETLWS 535
+PR +AE WS
Sbjct: 463 FPRLPGVAELGWS 475
>pdb|1M03|A Chain A, Mutant Streptomyces Plicatus Beta-Hexosaminidase (D313a)
In Complex With Product (Glcnac)
Length = 512
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 117/433 (27%), Positives = 183/433 (42%), Gaps = 75/433 (17%)
Query: 124 NETYTL-SIPADASIANLTAHTVWGAMRGLETFSQLV-------WGKPNLLVASGLYVWD 175
+E Y L S PA +I TA G G++T QL+ +P + +G + D
Sbjct: 97 DEGYRLDSGPAGVTI---TARKAAGLFHGVQTLRQLLPPAVEKDSAQPGPWLVAGGTIED 153
Query: 176 SPLFAHRGLILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAA 235
+P +A R +LD SR+++GVD++ R I ++ K N H H++D + + + S P LA
Sbjct: 154 TPRYAWRSAMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLAT 213
Query: 236 KGSY-----GHDMQYSPDDVKKIVEFGLTHGVRVLPEIDSPGHTGSWAEAYPEIVTCANK 290
G G Y+ + K+IV + + + V+PEID PGHT + +Y E+ C
Sbjct: 214 YGGSTEVGGGPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYAEL-NCDGV 272
Query: 291 FWWPAESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNLFPEAFYHAGADEIIPGC 350
A +T ++ G L TY + +VI ++ L P + H G E
Sbjct: 273 ----APPLYTG---TKVGFSSLCVDKDVTYDFVDDVIGELAALTPGRYLHIGGAE----- 320
Query: 351 WKADSTIQS-FLSNGGTLSQLLEKFVGSTLPYIVFFNRTVVYWEDVLLDDNVNVRPSFLP 409
A ST ++ F++ F+ P + + +TVV W + + P
Sbjct: 321 --AHSTPKADFVA-----------FMKRVQPIVAKYGKTVVGWHQLAGAE---------P 358
Query: 410 KEHTILQTW------NNGPNNTKRIVDAGYRAIVSSSEFYYLDCGHGDFLGNDSQYDQLQ 463
E ++Q W + G I+S ++ YLD +Y +
Sbjct: 359 VEGALVQYWGLDRTGDAEKAEVAEAARNGTGLILSPADRTYLDM----------KYTKDT 408
Query: 464 PSSSANNGGSWCGPFKTWQTIYDYDITYGLSEEEAKMVIGGEVALWSEQ-ADPKVLDVRL 522
P G SW G + Q YD+D L A V G E LW+E +DP LD
Sbjct: 409 PL-----GLSWAG-YVEVQRSYDWDPAGYLPGAPADAVRGVEAPLWTETLSDPDQLDYMA 462
Query: 523 WPRTSAMAETLWS 535
+PR +AE WS
Sbjct: 463 FPRLPGVAELGWS 475
>pdb|3GH4|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12
pdb|3GH5|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Glcnac
pdb|3GH7|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Galnac
pdb|3SUR|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nag-Thiazoline.
pdb|3SUS|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With
Gal-Nag-Thiazoline
pdb|3SUT|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Pugnac
pdb|3SUU|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Gal-Pugnac
pdb|3SUV|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nhac-Dnj
pdb|3SUW|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nhac-Cas
Length = 525
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 124/510 (24%), Positives = 202/510 (39%), Gaps = 87/510 (17%)
Query: 91 TPSLINITTSSSSALHTLFITVESLLTPLQHGVNETYTLSIPADASIAN----------- 139
T L NI + + L+ S++ Q Y ++ +A++ N
Sbjct: 73 TDELFNIGQALAKKLNASTGYTISVVKSNQPTAGSIYLTTVGGNAALGNEGYDLITTSNQ 132
Query: 140 --LTAHTVWGAMRGLETFSQLV-WGKPNLLVASGLY-------VWDSPLFAHRGLILDTS 189
LTA+ G RG +T QL+ G V SG+ + D P + +RGL+LD +
Sbjct: 133 VTLTANKPEGVFRGNQTLLQLLPAGIEKNTVVSGVQWVIPHSNISDKPEYEYRGLMLDVA 192
Query: 190 RNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQ----- 244
R+++ VD++ R I S K+N FH H++D + + + S PDL GS G
Sbjct: 193 RHFFTVDEVKRQIDLASQYKINKFHMHLSDDQGWRIEIKSWPDLIEIGSKGQVGGGPGGY 252
Query: 245 YSPDDVKKIVEFGLTHGVRVLPEIDSPGHTGSWAEAYPEIVTCANKFWWPAESNWTNRLA 304
Y+ + K IV + + V+PEID PGHT + +Y E+ P R
Sbjct: 253 YTQEQFKDIVSYAAERYIEVIPEIDMPGHTNAALASYGELN--------PDGKRKAMRTD 304
Query: 305 SEPGTGHLNPLNPKTYKILKNVINDIVNLFPEAFYHAGADEIIPGCWKADSTIQSFLSNG 364
+ G L P TY+ +++VI+++ + P + H G DE +
Sbjct: 305 TAVGYSTLMPRAEITYQFVEDVISELAAISPSPYIHLGGDE-----------------SN 347
Query: 365 GTLSQLLEKFVGSTLPYIVFFNRTVVYWEDVLLDDNVNVRPSFLPKEHTILQTWNNGPNN 424
T + + F G + + VV W+ S ++LQ W +
Sbjct: 348 ATSAADYDYFFGRVTAIANSYGKKVVGWDP--------SDTSSGATSDSVLQNWTCSAST 399
Query: 425 TKRIVDAGYRAIVSSSEFYYLDCGHGDFLGNDSQYDQLQPSSSANNGGSWCGPFKTWQTI 484
G + IVS + Y D +Y P G W G F
Sbjct: 400 GTAAKAKGMKVIVSPANAYL-----------DMKYYSDSPI-----GLQWRG-FVNTNRA 442
Query: 485 YDYDITYGLSEEEAKMVIGGEVALWSEQ-ADPKVLDVRLWPRTSAMAETLWSGNRDEETG 543
Y++D T + + + G E LW+E LD L+P+ + AE W+ D
Sbjct: 443 YNWDPTDCI---KGANIYGVESTLWTETFVTQDHLDYMLYPKLLSNAEVGWTARGD---- 495
Query: 544 IKRYAQATDRLNEWRYRMVSRGVG--AEPI 571
+ + +RL E R+ ++G+ A+PI
Sbjct: 496 -RNWDDFKERLIEHTPRLQNKGIKFFADPI 524
>pdb|3RCN|A Chain A, Crystal Structure Of Beta-N-Acetylhexosaminidase From
Arthrobacter Aurescens
Length = 543
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 100/401 (24%), Positives = 172/401 (42%), Gaps = 54/401 (13%)
Query: 173 VWDSPLFAHRGLILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPD 232
V D P F +RG LD +R++ D++LR I+ + +K+NV H H+TD + + P
Sbjct: 132 VEDKPRFGYRGTXLDVARHFXPKDNVLRFIEVXAXHKLNVLHLHLTDDQGWRXQINRYPK 191
Query: 233 LAAKGSYG-----------------HDMQYSPDDVKKIVEFGLTHGVRVLPEIDSPGHTG 275
L G++ H Y+ DD+++IV F + V+PEID PGH+
Sbjct: 192 LTETGAWRRESSLGSWRAGVFDGRPHGGFYTQDDLREIVAFAADRHITVIPEIDVPGHSQ 251
Query: 276 SWAEAYPEIVTCANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNLFP 335
+ AYPE+ P E WT +E + ++ + + +NV++++V +FP
Sbjct: 252 AAIAAYPELGAGPADGSSPVEV-WTRWGINE----TVLEVSETSLEFYRNVLDEVVEIFP 306
Query: 336 EAFYHAGADEIIPGCWKADSTIQSFLSNGG--TLSQLLEKFVGSTLPYIVFFNRTVVYWE 393
+ G DE+ W+A + Q+ + G +S L FVG ++ R W+
Sbjct: 307 SPWISLGGDEVPLTQWQASAQAQAKAAELGLDDVSGLHSWFVGQLALHLKHHGRATSVWD 366
Query: 394 DVLLDDNVNVRPSFLPKEHTILQTWNNGPNNTKRIVDAGYRAIVSSSEFYYLDCGHGDFL 453
+ + LP + ++ +W G + GY + YLD D
Sbjct: 367 E--------IGDGGLP-DGALVASW-RGYEGGIDALRKGYDVVXCPEHKLYLDHRQAD-- 414
Query: 454 GNDSQYDQLQPSSSANNGGSWCGPFKTWQTIYDYDITYGLSEEE-AKMVIGGEVALWSEQ 512
G+D G T Q +Y+++ G+ + ++G + +WSE
Sbjct: 415 GDDEPVP--------------VGFVTTLQAVYEFEPLPGVEGTDFPGRLLGAQANIWSEH 460
Query: 513 AD-PKVLDVRLWPRTSAMAETLWS--GNRDEETGIKRYAQA 550
D P+ + +PR SA++E WS RD + + R A
Sbjct: 461 LDSPRRVQFAAFPRLSAISEVFWSNPAGRDYDEFLTRLTGA 501
>pdb|1QBB|A Chain A, Bacterial Chitobiase Complexed With Chitobiose (Dinag)
pdb|1QBA|A Chain A, Bacterial Chitobiase, Glycosyl Hydrolase Family 20
Length = 858
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 111/259 (42%), Gaps = 39/259 (15%)
Query: 123 VNETYTLSIPADASIANLTAHTVWGAMRGLETFSQLVWGKPNLLVASGLYVWDSPLFAHR 182
V+ Y L I A + G GL++ LV + +A+ L D+P F +R
Sbjct: 258 VSGAYELKIGKKE--AQVIGFDQAGVFYGLQSILSLVPSDGSGKIAT-LDASDAPRFPYR 314
Query: 183 GLILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLA-AKGSYGH 241
G+ LD +RN++ D +LR + M+ K+N FH+H++D + + +P P+L G H
Sbjct: 315 GIFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVGGQRCH 374
Query: 242 DMQ-------------------YSPDDVKKIVEFGLTHGVRVLPEIDSPGHTG----SWA 278
D+ +S D I+++ + V+PEID P H S
Sbjct: 375 DLSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMPAHARAAVVSME 434
Query: 279 EAYPEIVTC-----ANKFWW--PAESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIV 331
Y ++ AN+F P +++ T + +LNP + + + VI +I
Sbjct: 435 ARYKKLHAAGKEQEANEFRLVDPTDTSNTTSVQFFNRQSYLNPCLDSSQRFVDKVIGEIA 494
Query: 332 NLFPEA-----FYHAGADE 345
+ EA +H G DE
Sbjct: 495 QMHKEAGQPIKTWHFGGDE 513
>pdb|1C7T|A Chain A, Beta-N-Acetylhexosaminidase Mutant E540d Complexed With
Di- N Acetyl-D-Glucosamine (Chitobiase)
Length = 858
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 112/259 (43%), Gaps = 39/259 (15%)
Query: 123 VNETYTLSIPADASIANLTAHTVWGAMRGLETFSQLVWGKPNLLVASGLYVWDSPLFAHR 182
V+ Y L I A + G GL++ LV + +A+ L D+P F +R
Sbjct: 258 VSGAYELKIGKKE--AQVIGFDQAGVFYGLQSILSLVPSDGSGKIAT-LDASDAPRFPYR 314
Query: 183 GLILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLA-AKGSYGH 241
G+ LD +RN++ D +LR + M+ K+N FH+H++D + + +P P+L G H
Sbjct: 315 GIFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVGGQRCH 374
Query: 242 DMQ-------------------YSPDDVKKIVEFGLTHGVRVLPEIDSPGHTG----SWA 278
D+ +S D I+++ + V+PEID P H S
Sbjct: 375 DLSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMPAHARAAVVSME 434
Query: 279 EAYPEIVTC-----ANKFWWPAESNWTNRLASE--PGTGHLNPLNPKTYKILKNVINDIV 331
Y ++ AN+F +++ +N + + +LNP + + + VI +I
Sbjct: 435 ARYKKLHAAGKEQEANEFRLVDQTDTSNTTSVQFFNRQSYLNPCLDSSQRFVDKVIGEIA 494
Query: 332 NLFPEA-----FYHAGADE 345
+ EA +H G D+
Sbjct: 495 QMHKEAGQPIKTWHFGGDD 513
>pdb|1C7S|A Chain A, Beta-N-Acetylhexosaminidase Mutant D539a Complexed With
Di- N-Acetyl-Beta-D-Glucosamine (Chitobiase)
Length = 858
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 107/246 (43%), Gaps = 34/246 (13%)
Query: 123 VNETYTLSIPADASIANLTAHTVWGAMRGLETFSQLVWGKPNLLVASGLYVWDSPLFAHR 182
V+ Y L I A + G GL++ LV + +A+ L D+P F +R
Sbjct: 258 VSGAYELKIGKKE--AQVIGFDQAGVFYGLQSILSLVPSDGSGKIAT-LDASDAPRFPYR 314
Query: 183 GLILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLA-AKGSYGH 241
G+ LD +RN++ D +LR + M+ K+N FH+H++D + + +P P+L G H
Sbjct: 315 GIFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVGGQRCH 374
Query: 242 DMQ-------------------YSPDDVKKIVEFGLTHGVRVLPEIDSPGHTG----SWA 278
D+ +S D I+++ + V+PEID P H S
Sbjct: 375 DLSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMPAHARAAVVSME 434
Query: 279 EAYPEIVTC-----ANKFWWPAESNWTNRLASE--PGTGHLNPLNPKTYKILKNVINDIV 331
Y ++ AN+F +++ +N + + +LNP + + + VI +I
Sbjct: 435 ARYKKLHAAGKEQEANEFRLVDQTDTSNTTSVQFFNRQSYLNPCLDSSQRFVDKVIGEIA 494
Query: 332 NLFPEA 337
+ EA
Sbjct: 495 QMHKEA 500
>pdb|1YHT|A Chain A, Crystal Structure Analysis Of Dispersin B
Length = 367
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 90/208 (43%), Gaps = 36/208 (17%)
Query: 183 GLILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPL---VLPSEPDLAAKGSY 239
GL+LD +R++Y + I I T+S + N H H +D ++ + +L + A +G
Sbjct: 20 GLMLDIARHFYSPEVIKSFIDTISLSGGNFLHLHFSDHENYAIESHLLNQRAENAVQGKD 79
Query: 240 GHDMQYSP------------DDVKKIVEFGLTHGVRVLPEIDSPGHTGSWAEAYPEIVTC 287
G + +P DD+K + G+ ++PE+DSP H + I
Sbjct: 80 G--IYINPYTGKPFLSYRQLDDIKA---YAKAKGIELIPELDSPNHMTA-------IFKL 127
Query: 288 ANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNLFPEA--FYHAGADE 345
K + L S ++ N + +++++++++++F + +H G DE
Sbjct: 128 VQK---DRGVKYLQGLKSRQVDDEIDITNADSITFMQSLMSEVIDIFGDTSQHFHIGGDE 184
Query: 346 IIPGCWKADSTIQSFLSNGGTLSQLLEK 373
+ +S F++ LS LEK
Sbjct: 185 F---GYSVESN-HEFITYANKLSYFLEK 208
>pdb|3O9P|A Chain A, The Structure Of The Escherichia Coli Murein Tripeptide
Binding Protein Mppa
Length = 519
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 112 VESLLTPLQHGVN--ETYTLSIPADASI---ANLTAHTVWGAMRGLETFSQLVWGKPNLL 166
++ TP Q GV + +TL I D + NLTA+ + ++ S W KP L
Sbjct: 129 IDGKATPDQLGVTAVDAHTLKIQLDKPLPWFVNLTANFAFFPVQKANVESGKEWTKPGNL 188
Query: 167 VASGLYVWDSPLFAHRGLILDTSRNYYGVDDILRTIKTMSFNK 209
+ +G YV + + +++ + + +L+ + + N+
Sbjct: 189 IGNGAYVLKERVVNEKLVVVPNTHYWDNAKTVLQKVTFLPINQ 231
>pdb|1IK3|A Chain A, Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydroperoxy-
9(Z),11(E)-Octadecadienoic Acid
pdb|1HU9|A Chain A, Lipoxygenase-3 (Soybean) Complex With 4-Hydroperoxy-2-
Methoxy-Phenol
pdb|1JNQ|A Chain A, Lipoxygenase-3 (Soybean) Complex With Epigallocathechin
(Egc)
pdb|1N8Q|A Chain A, Lipoxygenase In Complex With Protocatechuic Acid
pdb|1NO3|A Chain A, Refined Structure Of Soybean Lipoxygenase-3 With
4-nitrocatechol At 2.15 Angstrom Resolution
pdb|1RRH|A Chain A, Soybean Lipoxygenase (Lox-3) At Ambient Temperatures At
2.0 A Resolution
pdb|1RRL|A Chain A, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1RRL|B Chain B, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1LNH|A Chain A, Lipoxygenase-3(Soybean) Non-Heme Fe(Ii) Metalloprotein
Length = 857
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 469 NNGGSWCGPFKTWQTIYDYDITYGL-----SEEEAKMVIGG 504
N G G K W+ IYDYD+ L E A+ V+GG
Sbjct: 186 NLRGDGTGERKEWERIYDYDVYNDLGDPDKGENHARPVLGG 226
>pdb|1ROV|A Chain A, Lipoxygenase-3 Treated With Cumene Hydroperoxide
Length = 857
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 469 NNGGSWCGPFKTWQTIYDYDITYGL-----SEEEAKMVIGG 504
N G G K W+ IYDYD+ L E A+ V+GG
Sbjct: 186 NLRGDGTGERKEWERIYDYDVYNDLGDPDKGENHARPVLGG 226
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,777,270
Number of Sequences: 62578
Number of extensions: 832671
Number of successful extensions: 1739
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1652
Number of HSP's gapped (non-prelim): 39
length of query: 587
length of database: 14,973,337
effective HSP length: 104
effective length of query: 483
effective length of database: 8,465,225
effective search space: 4088703675
effective search space used: 4088703675
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)