Query 044344
Match_columns 587
No_of_seqs 237 out of 1697
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 13:44:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044344.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044344hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2499 Beta-N-acetylhexosamin 100.0 3E-106 6E-111 839.4 42.9 487 37-584 35-542 (542)
2 cd06562 GH20_HexA_HexB-like Be 100.0 3.4E-89 7.4E-94 722.6 34.4 345 179-565 1-348 (348)
3 cd06569 GH20_Sm-chitobiase-lik 100.0 5.2E-87 1.1E-91 723.4 36.2 351 175-540 1-421 (445)
4 cd06563 GH20_chitobiase-like T 100.0 5.4E-86 1.2E-90 701.1 33.5 337 179-554 1-357 (357)
5 cd06570 GH20_chitobiase-like_1 100.0 6.9E-84 1.5E-88 669.9 32.1 309 179-554 1-311 (311)
6 cd06568 GH20_SpHex_like A subg 100.0 2.1E-82 4.5E-87 664.9 32.3 321 179-554 1-329 (329)
7 COG3525 Chb N-acetyl-beta-hexo 100.0 6.4E-78 1.4E-82 646.8 33.5 416 123-571 204-645 (732)
8 PF00728 Glyco_hydro_20: Glyco 100.0 1.4E-77 3E-82 635.6 19.2 335 179-536 1-350 (351)
9 cd02742 GH20_hexosaminidase Be 100.0 1.6E-74 3.5E-79 600.6 29.1 293 181-535 1-303 (303)
10 cd06564 GH20_DspB_LnbB-like Gl 100.0 8.2E-72 1.8E-76 586.1 28.6 299 180-536 1-326 (326)
11 cd06565 GH20_GcnA-like Glycosy 100.0 7.3E-51 1.6E-55 422.4 23.7 297 181-535 1-301 (301)
12 PF02838 Glyco_hydro_20b: Glyc 99.7 3.3E-16 7.1E-21 141.8 13.5 123 36-176 2-124 (124)
13 PF14845 Glycohydro_20b2: beta 99.5 7.2E-14 1.6E-18 127.5 11.1 118 38-158 1-128 (128)
14 PF02638 DUF187: Glycosyl hydr 97.5 0.0083 1.8E-07 63.2 18.7 196 180-386 1-220 (311)
15 PF13200 DUF4015: Putative gly 97.2 0.0056 1.2E-07 64.3 13.1 172 195-389 12-190 (316)
16 PF07555 NAGidase: beta-N-acet 96.8 0.027 5.8E-07 59.1 14.3 145 182-385 1-148 (306)
17 COG1649 Uncharacterized protei 96.2 0.21 4.5E-06 54.3 16.8 150 178-336 44-200 (418)
18 PF03648 Glyco_hydro_67N: Glyc 95.8 0.062 1.3E-06 48.6 9.1 88 61-155 23-122 (122)
19 PF10566 Glyco_hydro_97: Glyco 95.4 0.061 1.3E-06 55.4 8.5 115 190-333 26-149 (273)
20 PF14871 GHL6: Hypothetical gl 95.4 0.16 3.5E-06 46.7 10.4 122 199-335 3-124 (132)
21 smart00642 Aamy Alpha-amylase 93.7 0.38 8.2E-06 45.9 8.9 76 193-276 16-97 (166)
22 PRK12313 glycogen branching en 93.4 0.83 1.8E-05 52.9 12.9 126 192-334 166-301 (633)
23 PRK14706 glycogen branching en 93.3 2.7 5.9E-05 48.7 16.8 126 192-335 163-299 (639)
24 PLN02960 alpha-amylase 93.3 0.71 1.5E-05 54.5 11.9 127 192-334 412-548 (897)
25 PLN02447 1,4-alpha-glucan-bran 93.2 3.3 7.1E-05 48.7 17.2 182 193-396 247-447 (758)
26 PRK14705 glycogen branching en 93.0 0.79 1.7E-05 56.4 12.3 122 197-335 767-897 (1224)
27 TIGR01515 branching_enzym alph 92.8 0.94 2E-05 52.2 12.1 170 198-394 159-348 (613)
28 TIGR02402 trehalose_TreZ malto 92.5 1.1 2.3E-05 51.0 11.9 119 195-334 110-236 (542)
29 PF02449 Glyco_hydro_42: Beta- 92.3 0.58 1.2E-05 50.5 9.0 139 193-359 7-150 (374)
30 PRK12568 glycogen branching en 92.3 1.3 2.8E-05 51.7 12.3 127 192-335 265-401 (730)
31 PF00128 Alpha-amylase: Alpha 92.0 0.25 5.4E-06 50.5 5.6 132 195-334 3-161 (316)
32 PRK05402 glycogen branching en 91.4 1.7 3.6E-05 51.3 12.0 123 192-334 261-396 (726)
33 PF00150 Cellulase: Cellulase 91.0 1.2 2.6E-05 45.1 9.3 155 179-388 8-165 (281)
34 PRK10933 trehalose-6-phosphate 90.0 3.7 8.1E-05 46.8 12.9 75 194-276 31-108 (551)
35 TIGR02100 glgX_debranch glycog 89.1 2.1 4.7E-05 50.0 10.3 126 201-335 189-334 (688)
36 PLN02784 alpha-amylase 88.8 5.4 0.00012 47.3 13.0 88 182-277 507-596 (894)
37 COG0296 GlgB 1,4-alpha-glucan 87.6 4.5 9.9E-05 46.4 11.3 134 184-334 150-295 (628)
38 TIGR02104 pulA_typeI pullulana 85.9 3.9 8.5E-05 47.1 9.9 146 182-334 149-311 (605)
39 COG3661 AguA Alpha-glucuronida 85.6 28 0.00062 38.0 15.2 166 122-336 91-279 (684)
40 TIGR02403 trehalose_treC alpha 85.4 2.8 6E-05 47.7 8.3 76 193-276 24-102 (543)
41 PRK03705 glycogen debranching 85.2 6.3 0.00014 45.9 11.1 120 201-335 184-329 (658)
42 TIGR02102 pullulan_Gpos pullul 85.2 8 0.00017 47.5 12.3 129 194-334 478-634 (1111)
43 PF02065 Melibiase: Melibiase; 84.4 4.1 8.8E-05 44.4 8.7 130 193-341 55-189 (394)
44 PRK14511 maltooligosyl trehalo 84.1 3.8 8.3E-05 48.8 8.8 76 193-276 17-96 (879)
45 TIGR02401 trehalose_TreY malto 83.3 4.4 9.5E-05 48.0 8.8 77 192-276 12-92 (825)
46 PRK14510 putative bifunctional 83.1 7 0.00015 48.7 10.9 125 200-332 191-333 (1221)
47 cd06593 GH31_xylosidase_YicI Y 82.6 7.2 0.00016 40.8 9.4 140 177-333 7-148 (308)
48 PRK09441 cytoplasmic alpha-amy 81.7 5.1 0.00011 44.8 8.4 78 196-275 22-107 (479)
49 TIGR02456 treS_nterm trehalose 80.6 5 0.00011 45.5 8.0 75 194-276 26-103 (539)
50 PLN02361 alpha-amylase 80.3 21 0.00046 39.1 12.2 72 196-275 29-102 (401)
51 PRK10785 maltodextrin glucosid 79.0 6.3 0.00014 45.4 8.2 79 190-276 171-253 (598)
52 PLN03244 alpha-amylase; Provis 73.6 8.1 0.00018 45.4 6.9 133 244-394 437-585 (872)
53 PLN02187 rooty/superroot1 73.5 9.8 0.00021 42.3 7.6 24 243-266 219-242 (462)
54 cd06594 GH31_glucosidase_YihQ 73.0 21 0.00045 37.7 9.5 141 177-331 7-152 (317)
55 PLN00145 tyrosine/nicotianamin 72.4 9.5 0.00021 41.9 7.1 24 243-266 205-228 (430)
56 PF01055 Glyco_hydro_31: Glyco 71.6 18 0.00038 39.8 9.0 145 177-340 26-175 (441)
57 TIGR02103 pullul_strch alpha-1 70.8 74 0.0016 38.5 14.3 124 248-397 404-528 (898)
58 COG0436 Aspartate/tyrosine/aro 70.5 12 0.00027 40.6 7.4 24 243-266 178-201 (393)
59 KOG0470 1,4-alpha-glucan branc 69.9 5.5 0.00012 46.0 4.5 123 198-333 257-393 (757)
60 PLN02877 alpha-amylase/limit d 69.9 40 0.00086 41.0 11.8 29 247-276 465-493 (970)
61 PLN00196 alpha-amylase; Provis 68.4 18 0.00039 39.9 8.1 73 195-276 43-119 (428)
62 PRK14507 putative bifunctional 67.7 17 0.00037 46.5 8.5 77 191-275 753-833 (1693)
63 cd06592 GH31_glucosidase_KIAA1 67.0 38 0.00081 35.5 9.8 120 191-332 25-152 (303)
64 PLN00143 tyrosine/nicotianamin 66.8 19 0.0004 39.2 7.8 24 243-266 185-208 (409)
65 cd06591 GH31_xylosidase_XylS X 66.4 36 0.00077 35.9 9.6 124 192-330 20-144 (319)
66 PRK07681 aspartate aminotransf 63.8 20 0.00044 38.6 7.4 23 243-265 181-203 (399)
67 PRK09257 aromatic amino acid a 63.6 29 0.00062 37.4 8.5 24 243-266 187-210 (396)
68 KOG0259 Tyrosine aminotransfer 63.3 13 0.00027 40.1 5.3 33 242-275 213-245 (447)
69 TIGR03234 OH-pyruv-isom hydrox 63.0 14 0.00031 37.1 5.7 101 152-268 41-143 (254)
70 cd00019 AP2Ec AP endonuclease 63.0 12 0.00025 38.4 5.1 62 193-268 82-143 (279)
71 PTZ00433 tyrosine aminotransfe 61.1 23 0.0005 38.5 7.2 24 243-266 192-215 (412)
72 TIGR02455 TreS_stutzeri trehal 60.7 22 0.00048 41.0 7.0 69 199-276 77-157 (688)
73 PF13199 Glyco_hydro_66: Glyco 60.0 15 0.00033 41.9 5.6 226 174-421 97-334 (559)
74 PRK09147 succinyldiaminopimela 59.6 34 0.00074 36.8 8.2 24 243-266 181-204 (396)
75 cd06598 GH31_transferase_CtsZ 59.5 47 0.001 35.0 9.0 139 177-332 7-152 (317)
76 PRK06348 aspartate aminotransf 59.3 25 0.00054 37.7 7.0 24 243-266 177-200 (384)
77 PRK09505 malS alpha-amylase; R 58.7 37 0.00079 39.8 8.6 77 194-275 228-318 (683)
78 COG1874 LacA Beta-galactosidas 57.9 1.7E+02 0.0038 34.2 13.7 145 193-363 27-181 (673)
79 PRK07366 succinyldiaminopimela 56.9 26 0.00056 37.6 6.7 23 243-265 180-202 (388)
80 PRK07590 L,L-diaminopimelate a 56.6 50 0.0011 35.7 8.9 25 242-266 190-214 (409)
81 PLN02656 tyrosine transaminase 56.1 39 0.00085 36.6 8.0 23 243-265 184-206 (409)
82 TIGR03538 DapC_gpp succinyldia 55.8 38 0.00082 36.4 7.7 24 243-266 180-203 (393)
83 PRK07337 aminotransferase; Val 55.6 40 0.00088 36.1 7.9 25 243-267 178-202 (388)
84 PLN02376 1-aminocyclopropane-1 55.5 52 0.0011 37.0 9.0 24 243-266 214-237 (496)
85 PRK09276 LL-diaminopimelate am 55.2 57 0.0012 34.8 9.0 24 243-266 181-204 (385)
86 PRK10658 putative alpha-glucos 55.1 97 0.0021 36.3 11.3 141 177-333 264-407 (665)
87 COG2100 Predicted Fe-S oxidore 55.1 83 0.0018 33.4 9.5 93 137-261 162-284 (414)
88 TIGR03537 DapC succinyldiamino 55.0 25 0.00055 37.1 6.1 24 243-266 151-174 (350)
89 PRK08068 transaminase; Reviewe 54.5 28 0.00062 37.3 6.5 24 243-266 182-205 (389)
90 PRK09265 aminotransferase AlaT 53.6 60 0.0013 35.0 8.9 24 243-266 183-206 (404)
91 PLN02368 alanine transaminase 53.2 35 0.00076 37.3 7.0 24 243-266 225-248 (407)
92 PF14701 hDGE_amylase: glucano 52.9 49 0.0011 36.4 7.9 86 194-285 20-116 (423)
93 PRK05942 aspartate aminotransf 52.2 45 0.00098 35.8 7.6 24 243-266 185-208 (394)
94 PRK08960 hypothetical protein; 51.8 36 0.00079 36.4 6.8 24 243-266 180-203 (387)
95 PRK07324 transaminase; Validat 51.5 54 0.0012 35.1 8.0 25 243-267 168-192 (373)
96 PRK06290 aspartate aminotransf 50.7 67 0.0015 35.0 8.7 23 243-265 194-216 (410)
97 TIGR03540 DapC_direct LL-diami 50.2 67 0.0015 34.2 8.5 23 243-265 179-201 (383)
98 cd00452 KDPG_aldolase KDPG and 49.8 17 0.00037 35.2 3.5 121 194-344 14-152 (190)
99 cd06602 GH31_MGAM_SI_GAA This 48.9 3.6E+02 0.0077 28.7 14.9 130 191-333 19-153 (339)
100 PLN02672 methionine S-methyltr 48.4 53 0.0012 40.5 8.0 24 243-266 844-867 (1082)
101 PLN02231 alanine transaminase 48.1 83 0.0018 35.8 9.1 24 243-266 286-309 (534)
102 COG0134 TrpC Indole-3-glycerol 47.7 26 0.00055 35.9 4.4 74 244-342 139-212 (254)
103 PRK10076 pyruvate formate lyas 47.6 60 0.0013 32.3 7.0 69 193-265 142-210 (213)
104 PRK05839 hypothetical protein; 47.5 1.3E+02 0.0028 32.1 10.2 25 242-266 169-193 (374)
105 PRK06108 aspartate aminotransf 47.1 60 0.0013 34.4 7.5 24 243-266 173-196 (382)
106 PLN02607 1-aminocyclopropane-1 47.1 1.4E+02 0.0029 33.1 10.5 63 187-266 175-238 (447)
107 PF01261 AP_endonuc_2: Xylose 46.9 54 0.0012 31.1 6.5 63 195-268 70-132 (213)
108 PTZ00377 alanine aminotransfer 46.5 94 0.002 34.6 9.2 24 243-266 233-256 (481)
109 PRK09275 aspartate aminotransf 46.3 74 0.0016 36.2 8.3 24 243-266 256-281 (527)
110 PRK06552 keto-hydroxyglutarate 44.9 58 0.0012 32.4 6.4 81 194-278 23-126 (213)
111 PRK08363 alanine aminotransfer 43.8 61 0.0013 34.9 7.0 24 243-266 181-204 (398)
112 PLN02450 1-aminocyclopropane-1 43.5 45 0.00097 37.1 6.0 24 243-266 206-229 (468)
113 TIGR01531 glyc_debranch glycog 43.4 74 0.0016 40.1 8.1 83 194-284 130-223 (1464)
114 PF05913 DUF871: Bacterial pro 43.3 59 0.0013 35.0 6.6 54 194-268 12-67 (357)
115 PRK13355 bifunctional HTH-doma 42.7 62 0.0013 36.4 7.1 24 243-266 296-319 (517)
116 PRK08636 aspartate aminotransf 42.2 1.8E+02 0.0039 31.3 10.4 23 243-265 190-212 (403)
117 PTZ00376 aspartate aminotransf 41.9 1.1E+02 0.0025 32.9 8.8 24 243-266 191-214 (404)
118 PRK13957 indole-3-glycerol-pho 41.8 30 0.00064 35.4 3.8 74 244-342 134-207 (247)
119 TIGR01265 tyr_nico_aTase tyros 41.0 72 0.0016 34.4 7.0 24 243-266 184-207 (403)
120 PF01212 Beta_elim_lyase: Beta 40.6 1.1E+02 0.0023 32.0 7.9 60 191-266 104-163 (290)
121 cd06565 GH20_GcnA-like Glycosy 40.4 52 0.0011 34.5 5.6 64 147-214 11-78 (301)
122 COG1523 PulA Type II secretory 40.4 1.4E+02 0.003 35.2 9.4 121 202-334 206-351 (697)
123 PRK05301 pyrroloquinoline quin 40.0 85 0.0019 33.7 7.4 59 190-274 43-101 (378)
124 PRK12414 putative aminotransfe 39.9 1.1E+02 0.0023 32.8 8.1 24 243-266 177-200 (384)
125 PRK07550 hypothetical protein; 39.5 71 0.0015 34.1 6.7 24 243-266 178-201 (386)
126 PRK07683 aminotransferase A; V 39.5 1.2E+02 0.0026 32.6 8.4 24 243-266 176-199 (387)
127 PRK09082 methionine aminotrans 39.5 1.2E+02 0.0026 32.4 8.4 24 243-266 178-201 (386)
128 PLN00175 aminotransferase fami 38.7 99 0.0021 33.7 7.7 24 243-266 202-225 (413)
129 KOG0258 Alanine aminotransfera 38.4 2.2E+02 0.0049 31.1 9.8 106 136-267 137-254 (475)
130 cd06595 GH31_xylosidase_XylS-l 38.1 2E+02 0.0043 29.9 9.5 130 177-331 8-146 (292)
131 cd06600 GH31_MGAM-like This fa 38.1 2.8E+02 0.0061 29.1 10.7 121 192-332 20-147 (317)
132 PRK06207 aspartate aminotransf 37.7 1.6E+02 0.0035 31.8 9.1 24 243-266 193-216 (405)
133 PRK00278 trpC indole-3-glycero 37.7 1.1E+02 0.0024 31.3 7.4 46 201-271 125-170 (260)
134 KOG0462 Elongation factor-type 37.4 24 0.00052 39.8 2.6 44 246-289 92-151 (650)
135 TIGR01866 cas_Csn2 CRISPR-asso 36.5 81 0.0018 31.5 5.9 65 179-266 132-196 (216)
136 TIGR03801 asp_4_decarbox aspar 36.4 1.4E+02 0.0029 34.0 8.4 24 243-266 255-280 (521)
137 TIGR02109 PQQ_syn_pqqE coenzym 36.0 99 0.0021 32.9 7.0 59 190-274 34-92 (358)
138 PF12971 NAGLU_N: Alpha-N-acet 35.8 85 0.0018 26.5 5.2 45 107-157 19-63 (86)
139 TIGR03542 DAPAT_plant LL-diami 35.6 2E+02 0.0044 30.9 9.5 25 242-266 187-211 (402)
140 PF07745 Glyco_hydro_53: Glyco 35.5 5.4E+02 0.012 27.5 12.3 138 199-386 27-167 (332)
141 PRK07568 aspartate aminotransf 35.3 2.6E+02 0.0056 29.8 10.2 24 243-266 177-200 (397)
142 PRK10426 alpha-glucosidase; Pr 35.2 2.5E+02 0.0054 32.8 10.5 140 177-329 205-347 (635)
143 cd06604 GH31_glucosidase_II_Ma 34.8 2.2E+02 0.0047 30.2 9.4 126 191-332 19-147 (339)
144 PLN02635 disproportionating en 34.3 57 0.0012 37.1 5.0 104 244-355 220-350 (538)
145 KOG3698 Hyaluronoglucosaminida 33.6 53 0.0012 37.1 4.4 70 190-274 27-99 (891)
146 PRK14508 4-alpha-glucanotransf 33.6 67 0.0014 36.2 5.4 104 244-355 194-324 (497)
147 PRK09856 fructoselysine 3-epim 33.2 55 0.0012 33.2 4.3 64 194-270 88-151 (275)
148 PRK01060 endonuclease IV; Prov 32.5 1.8E+02 0.0038 29.6 8.0 59 183-264 5-63 (281)
149 COG0366 AmyA Glycosidases [Car 32.4 1.1E+02 0.0025 33.5 7.0 73 195-275 28-103 (505)
150 PF01565 FAD_binding_4: FAD bi 32.3 50 0.0011 29.7 3.5 28 246-275 9-36 (139)
151 TIGR01182 eda Entner-Doudoroff 32.1 60 0.0013 32.1 4.2 81 194-278 18-118 (204)
152 cd06603 GH31_GANC_GANAB_alpha 31.8 2.6E+02 0.0057 29.6 9.4 125 191-332 19-147 (339)
153 PRK06358 threonine-phosphate d 31.6 2.1E+02 0.0047 30.1 8.7 24 243-266 156-179 (354)
154 TIGR03849 arch_ComA phosphosul 31.5 51 0.0011 33.4 3.6 104 192-329 8-112 (237)
155 PRK06836 aspartate aminotransf 31.3 1.6E+02 0.0034 31.6 7.8 23 243-265 183-211 (394)
156 PF07488 Glyco_hydro_67M: Glyc 31.1 6.7E+02 0.014 26.6 11.8 122 167-336 10-150 (328)
157 TIGR03586 PseI pseudaminic aci 31.1 1.6E+02 0.0034 31.4 7.4 77 194-274 15-103 (327)
158 COG1168 MalY Bifunctional PLP- 30.8 50 0.0011 35.7 3.5 27 242-268 172-199 (388)
159 cd06589 GH31 The enzymes of gl 30.2 98 0.0021 31.6 5.6 82 177-270 7-88 (265)
160 PRK06015 keto-hydroxyglutarate 30.1 76 0.0016 31.4 4.5 81 194-278 14-114 (201)
161 COG1313 PflX Uncharacterized F 29.9 99 0.0021 32.4 5.3 61 198-266 273-333 (335)
162 PRK08361 aspartate aminotransf 29.6 1.4E+02 0.003 32.0 6.9 24 243-266 181-204 (391)
163 PF13204 DUF4038: Protein of u 28.7 1.8E+02 0.0039 30.3 7.3 71 194-265 28-105 (289)
164 COG0481 LepA Membrane GTPase L 28.6 34 0.00074 38.1 1.9 44 247-290 42-103 (603)
165 COG1167 ARO8 Transcriptional r 28.6 5E+02 0.011 28.8 11.2 25 242-266 241-265 (459)
166 PF09183 DUF1947: Domain of un 28.5 37 0.00079 27.4 1.6 23 189-211 1-24 (65)
167 TIGR01264 tyr_amTase_E tyrosin 28.2 2.6E+02 0.0057 30.0 8.8 24 243-266 183-206 (401)
168 PF13380 CoA_binding_2: CoA bi 28.0 1.1E+02 0.0024 27.1 4.9 99 138-265 3-106 (116)
169 PRK05718 keto-hydroxyglutarate 27.5 77 0.0017 31.5 4.1 80 193-276 24-123 (212)
170 PRK14582 pgaB outer membrane N 26.6 1.1E+03 0.024 27.8 18.2 180 182-384 315-527 (671)
171 PLN02950 4-alpha-glucanotransf 26.6 97 0.0021 37.7 5.4 92 248-347 461-571 (909)
172 PRK14456 ribosomal RNA large s 26.4 3.8E+02 0.0081 29.1 9.4 118 123-272 200-320 (368)
173 PRK10340 ebgA cryptic beta-D-g 25.3 3.4E+02 0.0073 33.6 9.8 115 193-345 352-478 (1021)
174 PTZ00372 endonuclease 4-like p 24.7 90 0.0019 34.4 4.3 70 183-267 304-390 (413)
175 PRK05764 aspartate aminotransf 24.5 1.2E+02 0.0026 32.3 5.3 24 243-266 179-202 (393)
176 COG1217 TypA Predicted membran 24.1 43 0.00093 37.3 1.7 22 255-276 47-81 (603)
177 PRK06107 aspartate aminotransf 23.8 2.7E+02 0.0059 29.9 7.9 24 243-266 181-205 (402)
178 KOG0256 1-aminocyclopropane-1- 23.7 3.7E+02 0.0081 29.6 8.5 67 184-267 198-265 (471)
179 PRK09427 bifunctional indole-3 23.4 83 0.0018 35.1 3.8 37 243-279 141-177 (454)
180 PF02679 ComA: (2R)-phospho-3- 23.1 92 0.002 31.8 3.7 65 176-266 8-72 (244)
181 TIGR00542 hxl6Piso_put hexulos 22.8 1.2E+02 0.0026 30.9 4.6 61 195-268 93-153 (279)
182 TIGR03569 NeuB_NnaB N-acetylne 22.5 2.1E+02 0.0045 30.5 6.4 73 194-270 14-98 (329)
183 PRK07114 keto-hydroxyglutarate 22.4 1.5E+02 0.0032 29.8 5.0 81 194-278 25-129 (222)
184 PF14542 Acetyltransf_CG: GCN5 22.2 86 0.0019 25.8 2.8 37 245-284 39-75 (78)
185 PF03198 Glyco_hydro_72: Gluca 22.1 6.3E+02 0.014 26.8 9.7 54 195-274 52-105 (314)
186 PRK13802 bifunctional indole-3 22.1 93 0.002 36.6 4.0 37 244-280 143-179 (695)
187 PLN03236 4-alpha-glucanotransf 22.0 1.5E+02 0.0032 35.3 5.5 82 246-335 272-362 (745)
188 PRK10626 hypothetical protein; 21.2 5.7E+02 0.012 26.1 8.8 48 37-84 31-83 (239)
189 smart00518 AP2Ec AP endonuclea 20.9 3.8E+02 0.0082 26.9 7.9 60 183-265 3-62 (273)
190 PF03102 NeuB: NeuB family; I 20.8 90 0.002 31.7 3.2 23 244-266 52-74 (241)
191 KOG3625 Alpha amylase [Carbohy 20.6 2.5E+02 0.0054 34.1 6.8 86 194-285 140-236 (1521)
192 COG1306 Uncharacterized conser 20.5 2E+02 0.0044 30.2 5.5 125 195-333 76-208 (400)
193 PRK11145 pflA pyruvate formate 20.4 2E+02 0.0044 28.6 5.7 68 195-265 178-245 (246)
194 cd01299 Met_dep_hydrolase_A Me 20.4 4.7E+02 0.01 27.1 8.8 64 194-269 118-181 (342)
195 PRK08056 threonine-phosphate d 20.2 3.2E+02 0.0068 28.8 7.4 24 243-266 157-180 (356)
196 PRK14467 ribosomal RNA large s 20.0 1.8E+02 0.004 31.2 5.5 55 194-267 266-324 (348)
No 1
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.5e-106 Score=839.44 Aligned_cols=487 Identities=41% Similarity=0.804 Sum_probs=411.4
Q ss_pred ceeecCceEEEcCCcceEEcCCCe-EEE--c-----CCchhHHHHHHHHHHHHHhhC--CCCccccccccccCCCCCCce
Q 044344 37 NVWPKPRIMSWTTQPRANLLSPSF-AIS--S-----PKHFYLSSAANRYLKLIKNEH--HQPLVTPSLINITTSSSSALH 106 (587)
Q Consensus 37 ~l~P~P~~~~~~~~~~~~~l~~~~-~i~--~-----~~~~~l~~a~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~ 106 (587)
.|||.|+...+++. |.++. -+. . ..+..+.++++||...++... ..|..+.- ... . ....
T Consensus 35 ~lWP~P~~~~~~~~-----l~~~i~~~~~~~~~~~~~~~~il~a~~~ry~~~i~~~~~~~~p~~~~~--~~~-~--~~~~ 104 (542)
T KOG2499|consen 35 ALWPLPRTFSCGDE-----LAPEIFYSQIDINLGAGKGCAILRAAFDRYMNIIFGRVEWDPPLLSFH--VKL-G--GEAA 104 (542)
T ss_pred ccccCCcccccccc-----ccccccceeecccccCCcchhHHHHHHHHHhhhhhcccccCCccceee--eec-c--ceEE
Confidence 69999999988764 22221 111 1 135789999999999998742 22322110 011 1 1122
Q ss_pred eEEEEEecCC--CCCCCCCCcceEEEeecCCCeEEEEecChhhhhHHHHHHHHhhcCCC-C-eeeeeceEEEccCCcccc
Q 044344 107 TLFITVESLL--TPLQHGVNETYTLSIPADASIANLTAHTVWGAMRGLETFSQLVWGKP-N-LLVASGLYVWDSPLFAHR 182 (587)
Q Consensus 107 ~i~i~i~~~~--~~l~~~~~E~Y~L~i~~~~~~i~I~a~~~~G~~~g~~Tl~Ql~~~~~-~-~~~p~~~~I~D~P~f~~R 182 (587)
.+.++++... .++..+.+|+|+|.|+.+...+.|.|++++|+++|++||+||+.++. + ...+...+|+|+|||+||
T Consensus 105 ~~~~~~~~~c~s~p~l~~~dEsYtL~V~~~~~~a~i~A~tvwGAlrglETfSqLv~~d~~~~~~~~~~~~I~D~PrF~hR 184 (542)
T KOG2499|consen 105 LITLTVTVECPSLPTLHGVDESYTLVVSTTATFAVILANTVWGALRGLETFSQLVWGDSIGGLFMIATAYIQDKPRFGHR 184 (542)
T ss_pred EEEEeecCCCCCcCcccccccceEEEeecCcceEEEeehhHHHHHHHHHHHHHHheeccCCceEEeeeeeEeccCCCccc
Confidence 3444444332 23334569999999996667899999999999999999999999643 2 233447899999999999
Q ss_pred eeeeCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 044344 183 GLILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGV 262 (587)
Q Consensus 183 G~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI 262 (587)
|+|||+||||+|++.||++||.||++|+|+||||++|+|+||+|++++|+|..+|||++.+.||.+|+++||+||+.|||
T Consensus 185 GlLlDTSRhylpv~~IkrtLeaMa~nKLNVlHWHivDs~SFPle~~~~PeL~~kGaYs~~~vYT~eDv~evV~yarlRGI 264 (542)
T KOG2499|consen 185 GLLLDTSRHYLPVKVIKRTLEAMAANKLNVLHWHIVDSQSFPLESPTFPELHRKGAYSPRHVYTREDVSEVVEYARLRGI 264 (542)
T ss_pred ceEEecccceecHHHHHHHHHHHHhhhhceeEEEeecCCCCccccCCchhhhhcCCCCcceeecHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCchhhHHHhCchhh-hhcccCcCCCCCcccccccCCCCCCcCCCCChhHHHHHHHHHHHHHHhCCCCeeee
Q 044344 263 RVLPEIDSPGHTGSWAEAYPEIV-TCANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNLFPEAFYHA 341 (587)
Q Consensus 263 ~VIPEID~PGH~~a~~~~~p~l~-~c~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~Ev~~lF~~~~iHI 341 (587)
+|+||||+|||+++|..++|+|. .| |+ +.+.++++++|||+++.||+|+++++.||.+.||+.+||+
T Consensus 265 RVlpEfD~PgHt~sWg~g~~~fl~p~-----------~~-~~~~~~~~gplnP~~n~tydvls~i~~dv~evFp~~~~Hl 332 (542)
T KOG2499|consen 265 RVLPEFDTPGHTGSWGPGYPDFLTPC-----------WS-SFEVQPPFGPLNPTNNHTYDVLSEIFEDVSEVFPDEFFHL 332 (542)
T ss_pred eeeecccCCcccccccCCCCcccCCc-----------cc-ccccCCCCcCCCCCchhHHHHHHHHHHHHHHhCcHHHeec
Confidence 99999999999999999999953 34 22 2455677899999999999999999999999999999999
Q ss_pred ccCCcCCCCCCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCCCcccCCCCCCCCCEEEEec
Q 044344 342 GADEIIPGCWKADSTIQSFLSNGG---TLSQLLEKFVGSTLPYIVFFNRTVVYWEDVLLDDNVNVRPSFLPKEHTILQTW 418 (587)
Q Consensus 342 GgDEv~~~~w~~~p~~~~~~~~~~---~~~~l~~~f~~~~~~~l~~~gk~~~~W~d~~~~~~~~~~~~~lp~~~~iv~~W 418 (587)
|||||...||+.+|++|+||++.| +..+++.+|+++..+++.+.+++++.|+|.+.+.. .++ .++|+|.|
T Consensus 333 GGDEV~~~CW~s~~~Iq~fM~~kGfg~~~~~~~~~~~~~~~~i~~s~~~~~I~Wqevf~n~~------~i~-p~tiiq~W 405 (542)
T KOG2499|consen 333 GGDEVSTPCWKSNPEIQDFMRKKGFGLDTKSLERLYIQFLLDILNSWNKTVIVWQEVFDNKR------KID-PRTIIQIW 405 (542)
T ss_pred CCceeecccccCChHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhcCceEEEeehhccccc------cCC-CCceeeee
Confidence 999999999999999999999988 45568899999999999999999999999996432 234 79999999
Q ss_pred CCCC--chHHHHHHhcCcEEeccCCceEEeCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccccccCCCCC-CCH
Q 044344 419 NNGP--NNTKRIVDAGYRAIVSSSEFYYLDCGHGDFLGNDSQYDQLQPSSSANNGGSWCGPFKTWQTIYDYDITYG-LSE 495 (587)
Q Consensus 419 ~~~~--~~~~~~~~~G~~vI~s~~~~~YlD~~~~~~~~~~~~y~~~~~~~~~~~g~~w~~~~~~~~~~Y~~dp~~~-l~~ 495 (587)
..+. ....+.+.+||++|+|+..+||||++. |. .+|+++|+.+|..+ .++
T Consensus 406 ~~~~~~~~~~k~v~~~~~~ivs~s~~wYLd~~~---------~g------------------~dw~~~Y~~~p~~~~g~~ 458 (542)
T KOG2499|consen 406 KIGTWYPKELKIVTKGYRFIVSNSAAWYLDHIG---------YG------------------SDWRKVYNTEPLSGMGTP 458 (542)
T ss_pred ccCCccHHHHHHHhccCceEEEeccceEeeccc---------cC------------------CChhheeeccccccCCCH
Confidence 9876 367788899999999999999999641 21 35789999999754 567
Q ss_pred hhhcccceeeeeccccCCCchhhHhHHHHHHHHHHhHhccCCCCCchhhhhHHHHHHHHHHHHHHHHHCCCCCCCCCCcc
Q 044344 496 EEAKMVIGGEVALWSEQADPKVLDVRLWPRTSAMAETLWSGNRDEETGIKRYAQATDRLNEWRYRMVSRGVGAEPIQPLW 575 (587)
Q Consensus 496 ~~~~~ilG~e~~lWsE~~~~~~l~~~~~PR~~A~AE~~W~~~~~~~~~~~~~~~~~~Rl~~~~~~l~~~gi~~~p~~~~~ 575 (587)
++++.|+|||+|||+|++|+.+++.++|||+.|+|||+||.++ .++..++.+||..|||||++|||.|+|++|.|
T Consensus 459 ~~k~lVlGGE~cmWgE~vD~t~L~~RlWPRAsA~AERLWS~~~-----~~~~~~A~~Rl~~~RcrLv~RGi~A~p~~p~~ 533 (542)
T KOG2499|consen 459 EQKKLVLGGEVCMWGEYVDNTNLESRLWPRASAAAERLWSNKK-----VSRLLDAYPRLHLFRCRLVARGIGAQPVQPGW 533 (542)
T ss_pred HHhhheecceeeeehhhccccccccccccchhHHHHHhhcccc-----cchHHHHHHHHHHHHHHHHhcCCCcCCCCCcc
Confidence 7788899999999999999999999999999999999999542 35689999999999999999999999999999
Q ss_pred cccCCCccc
Q 044344 576 CLRNPGMCN 584 (587)
Q Consensus 576 c~~~~~~c~ 584 (587)
|.+++++|.
T Consensus 534 C~~~~~~c~ 542 (542)
T KOG2499|consen 534 CLQEEGECP 542 (542)
T ss_pred cccCCCCCC
Confidence 999999994
No 2
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=100.00 E-value=3.4e-89 Score=722.56 Aligned_cols=345 Identities=46% Similarity=0.889 Sum_probs=308.2
Q ss_pred cccceeeeCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHH
Q 044344 179 FAHRGLILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGL 258 (587)
Q Consensus 179 f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~ 258 (587)
|+|||+|||+||||+|+++||++||.||.+|||+||||||||||||+|+++||+|+.+|+|+++++||++||++||+||+
T Consensus 1 f~~RG~mlDvaR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~ 80 (348)
T cd06562 1 FPHRGLLLDTSRHFLSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYAR 80 (348)
T ss_pred CCccceeeeccccCCCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCEEEecCCCCCchhhHHHhCchhhhhcccCcCCCCCcccccccCCCCCCcCCCCChhHHHHHHHHHHHHHHhCCCCe
Q 044344 259 THGVRVLPEIDSPGHTGSWAEAYPEIVTCANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNLFPEAF 338 (587)
Q Consensus 259 ~rgI~VIPEID~PGH~~a~~~~~p~l~~c~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~Ev~~lF~~~~ 338 (587)
+|||+||||||+|||+.+++++||+|..+... .|.. .+.++..++|||++|+|++|+++|++|++++||++|
T Consensus 81 ~rgI~vIPEID~PGH~~a~~~~~p~l~~~~~~-------~~~~-~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF~~~~ 152 (348)
T cd06562 81 LRGIRVIPEIDTPGHTGSWGQGYPELLTGCYA-------VWRK-YCPEPPCGQLNPTNPKTYDFLKTLFKEVSELFPDKY 152 (348)
T ss_pred HcCCEEEEeccCchhhHHHHHhChhhhCCCCc-------cccc-cccCCCCccccCCChhHHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999643211 1221 233456678999999999999999999999999999
Q ss_pred eeeccCCcCCCCCCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCCCcccCCCCCCCCCEEEE
Q 044344 339 YHAGADEIIPGCWKADSTIQSFLSNGG--TLSQLLEKFVGSTLPYIVFFNRTVVYWEDVLLDDNVNVRPSFLPKEHTILQ 416 (587)
Q Consensus 339 iHIGgDEv~~~~w~~~p~~~~~~~~~~--~~~~l~~~f~~~~~~~l~~~gk~~~~W~d~~~~~~~~~~~~~lp~~~~iv~ 416 (587)
|||||||+...||.++|.|+++|+++| +..+++.+|++++.++|+++||++++|+|++.+++ ..++ ++++|+
T Consensus 153 iHiGgDE~~~~~w~~~p~~~~~m~~~g~~~~~~l~~~f~~~~~~~l~~~Gk~~i~W~d~~~~~~-----~~~~-~~~iv~ 226 (348)
T cd06562 153 FHLGGDEVNFNCWNSNPEIQKFMKKNNGTDYSDLESYFIQRALDIVRSLGKTPIVWEEVFDNGV-----YLLP-KDTIVQ 226 (348)
T ss_pred eEeecCCCCCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCeEEEeeecccCCC-----ccCC-CCeEEE
Confidence 999999999999999999999999887 88999999999999999999999999999987543 2355 899999
Q ss_pred ecCCCCchHHHHHHhcCcEEeccCCceEEeCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccccccCCCC-CCCH
Q 044344 417 TWNNGPNNTKRIVDAGYRAIVSSSEFYYLDCGHGDFLGNDSQYDQLQPSSSANNGGSWCGPFKTWQTIYDYDITY-GLSE 495 (587)
Q Consensus 417 ~W~~~~~~~~~~~~~G~~vI~s~~~~~YlD~~~~~~~~~~~~y~~~~~~~~~~~g~~w~~~~~~~~~~Y~~dp~~-~l~~ 495 (587)
.|+++. .+++++++||+||+|+++++|||++++++. .++.+|+++|+++|.. ..++
T Consensus 227 ~W~~~~-~~~~~~~~G~~vI~s~~~~~Yld~~~~~~~----------------------~~~~~~~~~y~~~p~~~~~~~ 283 (348)
T cd06562 227 VWGGSD-ELKNVLAAGYKVILSSYDFWYLDCGFGGWV----------------------GPGNDWCDPYKNWPRIYSGTP 283 (348)
T ss_pred ECCCcH-HHHHHHHCCCCEEEeCCCcEEEeecCCCCC----------------------CCCCcHhhhhcCCCCCCCCCh
Confidence 999854 788999999999999999999999764310 1245778888888743 3334
Q ss_pred hhhcccceeeeeccccCCCchhhHhHHHHHHHHHHhHhccCCCCCchhhhhHHHHHHHHHHHHHHHHHCC
Q 044344 496 EEAKMVIGGEVALWSEQADPKVLDVRLWPRTSAMAETLWSGNRDEETGIKRYAQATDRLNEWRYRMVSRG 565 (587)
Q Consensus 496 ~~~~~ilG~e~~lWsE~~~~~~l~~~~~PR~~A~AE~~W~~~~~~~~~~~~~~~~~~Rl~~~~~~l~~~g 565 (587)
+.+++|+|+|+|||+|++++.++++++|||++|+||++|+++. .+++.+|.+||..|++||.+||
T Consensus 284 ~~~~~ilG~~~~lW~E~~~~~~~~~~~~PR~~a~AE~~W~~~~-----~~~~~~f~~Rl~~~~~~l~~~g 348 (348)
T cd06562 284 EQKKLVLGGEACMWGEQVDDTNLDQRLWPRASALAERLWSGPS-----DTNLTDAEPRLVEFRCRLVRRG 348 (348)
T ss_pred hhcccEEEEEEEeeeeeeCccceeehhhhhHHHHHHHhhCCCc-----CCCHHHHHHHHHHHHHHHHhCc
Confidence 5678999999999999999889999999999999999999864 3458999999999999999998
No 3
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=5.2e-87 Score=723.40 Aligned_cols=351 Identities=26% Similarity=0.485 Sum_probs=298.2
Q ss_pred ccCCcccceeeeCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCC--------------
Q 044344 175 DSPLFAHRGLILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYG-------------- 240 (587)
Q Consensus 175 D~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~-------------- 240 (587)
|+|||+|||+|||+||||+|+++||++||.||++|||+||||||||||||+|+++||+||++|+|+
T Consensus 1 D~Prf~~RGlmLDvaR~f~~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~ 80 (445)
T cd06569 1 DAPRFEYRGMHLDVARNFHSKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQL 80 (445)
T ss_pred CCCCCcccceeeeccCCCCCHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhccccccccccccccccccc
Confidence 899999999999999999999999999999999999999999999999999999999999999984
Q ss_pred ---------CCCCCCHHHHHHHHHHHHhcCCEEEecCCCCCchhhHHHh----Cchhhhhccc-----CcCCCCCccccc
Q 044344 241 ---------HDMQYSPDDVKKIVEFGLTHGVRVLPEIDSPGHTGSWAEA----YPEIVTCANK-----FWWPAESNWTNR 302 (587)
Q Consensus 241 ---------~~~~YT~~ei~eiv~yA~~rgI~VIPEID~PGH~~a~~~~----~p~l~~c~~~-----~~~~~~~~~~~~ 302 (587)
.+++||++||++||+||++|||+||||||+|||+.+++++ ||+|..+... +.+.+..+....
T Consensus 81 ~~~~~~~~~~~g~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~~g~~~~~~~~~~~d~~~~~~~ 160 (445)
T cd06569 81 GSGPDTNNSGSGYYSRADYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMAAGKPAEAEEYRLSDPADTSQY 160 (445)
T ss_pred ccCcccCcccCCccCHHHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhccCCccccccccccCccccccc
Confidence 2578999999999999999999999999999999999876 8999644221 111111111111
Q ss_pred ccCC-CCCCcCCCCChhHHHHHHHHHHHHHHhC-----CCCeeeeccCCcCCCCCCCCHHHH--HHHHcCC--CHHHHHH
Q 044344 303 LASE-PGTGHLNPLNPKTYKILKNVINDIVNLF-----PEAFYHAGADEIIPGCWKADSTIQ--SFLSNGG--TLSQLLE 372 (587)
Q Consensus 303 ~~~~-~~~~~L~~~~~~t~~fl~~v~~Ev~~lF-----~~~~iHIGgDEv~~~~w~~~p~~~--~~~~~~~--~~~~l~~ 372 (587)
.+.+ ...++|||++|+||+|+++|++|++++| |++||||||||+...||++||.|+ ++|++++ +..+++.
T Consensus 161 ~~~~~~~~~~L~p~~~~ty~fl~~vl~Ev~~lF~~~g~P~~yiHiGGDEv~~~~W~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (445)
T cd06569 161 LSVQFYTDNVINPCMPSTYRFVDKVIDEIARMHQEAGQPLTTIHFGGDEVPEGAWGGSPACKAQLFAKEGSVKDVEDLKD 240 (445)
T ss_pred ccccccccccccCCchhHHHHHHHHHHHHHHHHhccCCCcceEEEeccccCCCcccCCHHHHHHHHHHhcCCCCHHHHHH
Confidence 1111 2357899999999999999999999999 679999999999999999999999 8998876 7899999
Q ss_pred HHHHHHHHHHHhcCCeEEEEcccccCCCcccCCCCCCCCCEEEEecCCC----CchHHHHHHhcCcEEeccCCceEEeCC
Q 044344 373 KFVGSTLPYIVFFNRTVVYWEDVLLDDNVNVRPSFLPKEHTILQTWNNG----PNNTKRIVDAGYRAIVSSSEFYYLDCG 448 (587)
Q Consensus 373 ~f~~~~~~~l~~~gk~~~~W~d~~~~~~~~~~~~~lp~~~~iv~~W~~~----~~~~~~~~~~G~~vI~s~~~~~YlD~~ 448 (587)
+|++++.++|+++||++++|+|++...+.......++ ++++|++|+.+ .+.+.+++++||+||+|+++++|||++
T Consensus 241 ~f~~~v~~~l~~~Gk~~i~W~e~~~~~~~~~~~~~~~-~~~~v~~W~~~~~~~~~~~~~~~~~G~~vI~s~~~~~YlD~~ 319 (445)
T cd06569 241 YFFERVSKILKAHGITLAGWEDGLLGKDTTNVDGFAT-PYVWNNVWGWGYWGGEDRAYKLANKGYDVVLSNATNLYFDFP 319 (445)
T ss_pred HHHHHHHHHHHHcCCeEEEecccccCCCcccccccCC-CCeEEEEccCCcccccHHHHHHHHCCCCEEEeCCCcEEEecC
Confidence 9999999999999999999999987643210012345 69999999864 246788999999999999999999997
Q ss_pred CCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccccccCCC-----------------------CCCCHhhhcccceee
Q 044344 449 HGDFLGNDSQYDQLQPSSSANNGGSWCGPFKTWQTIYDYDIT-----------------------YGLSEEEAKMVIGGE 505 (587)
Q Consensus 449 ~~~~~~~~~~y~~~~~~~~~~~g~~w~~~~~~~~~~Y~~dp~-----------------------~~l~~~~~~~ilG~e 505 (587)
++. ++...|.+||+++.+|+++|+|+|. ..++++.+++|+|+|
T Consensus 320 ~~~--------------~~~~~g~~w~~~~~~~~~~y~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~e 385 (445)
T cd06569 320 YEK--------------HPEERGYYWAGRFVDTKKVFSFMPDNLYANAEVTRDGDPIDDTALNGKVRLTLEGPKNILGLQ 385 (445)
T ss_pred CCC--------------CCCcCCcccccCCCCHHHhhccCCchhhccchhhcccCccccccccccccCChhHhcceeEEE
Confidence 642 1345678899888999999999984 235667789999999
Q ss_pred eeccccCCC-chhhHhHHHHHHHHHHhHhccCCCCC
Q 044344 506 VALWSEQAD-PKVLDVRLWPRTSAMAETLWSGNRDE 540 (587)
Q Consensus 506 ~~lWsE~~~-~~~l~~~~~PR~~A~AE~~W~~~~~~ 540 (587)
+|||||+++ .+++++++|||++|+||++||++.++
T Consensus 386 ~~lWsE~v~~~~~l~~~~~PR~~A~AE~~Ws~~~~~ 421 (445)
T cd06569 386 GQLWSETIRTDEQLEYMVFPRLLALAERAWHKAPWE 421 (445)
T ss_pred EeeeccccCCHHHhHHHhhhHHHHHHHHHhcCCccc
Confidence 999999996 57899999999999999999997654
No 4
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=5.4e-86 Score=701.07 Aligned_cols=337 Identities=28% Similarity=0.593 Sum_probs=297.5
Q ss_pred cccceeeeCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCC----------------C
Q 044344 179 FAHRGLILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGH----------------D 242 (587)
Q Consensus 179 f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~----------------~ 242 (587)
|+|||+|||+||||+|+++||++||.||++|||+|||||+||||||+|+++||+|+++|+|+. +
T Consensus 1 f~~RG~mLD~aR~f~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~ 80 (357)
T cd06563 1 FSWRGLMLDVSRHFFPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYG 80 (357)
T ss_pred CCccceeeeccccCcCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccC
Confidence 899999999999999999999999999999999999999999999999999999999999985 5
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEecCCCCCchhhHHHhCchhhhhcccCcCCCCCcccccccCCCCCCcCCCCChhHHHH
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLPEIDSPGHTGSWAEAYPEIVTCANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKI 322 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIPEID~PGH~~a~~~~~p~l~~c~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~f 322 (587)
++||++|+++||+||++|||+||||||+|||+.+++++||+|..+.... ..+.......++|||++|+|++|
T Consensus 81 ~~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~~~pel~~~~~~~--------~~~~~~~~~~~~L~~~~~~t~~f 152 (357)
T cd06563 81 GFYTQEEIREIVAYAAERGITVIPEIDMPGHALAALAAYPELGCTGGPG--------SVVSVQGVVSNVLCPGKPETYTF 152 (357)
T ss_pred ceECHHHHHHHHHHHHHcCCEEEEecCCchhHHHHHHhCccccCCCCCC--------ccccccCcCCCccCCCChhHHHH
Confidence 8999999999999999999999999999999999999999996432211 00111234567899999999999
Q ss_pred HHHHHHHHHHhCCCCeeeeccCCcCCCCCCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCCC
Q 044344 323 LKNVINDIVNLFPEAFYHAGADEIIPGCWKADSTIQSFLSNGG--TLSQLLEKFVGSTLPYIVFFNRTVVYWEDVLLDDN 400 (587)
Q Consensus 323 l~~v~~Ev~~lF~~~~iHIGgDEv~~~~w~~~p~~~~~~~~~~--~~~~l~~~f~~~~~~~l~~~gk~~~~W~d~~~~~~ 400 (587)
+++|++|++++||++||||||||+...||+++|.|+++|+++| +..+++.+|++++.++|+++||++++|+|++..+
T Consensus 153 ~~~ll~E~~~lF~~~~iHiGgDE~~~~~w~~~~~~~~~~~~~g~~~~~~l~~~f~~~~~~~v~~~G~~~i~W~d~~~~~- 231 (357)
T cd06563 153 LEDVLDEVAELFPSPYIHIGGDEVPKGQWEKSPACQARMKEEGLKDEHELQSYFIKRVEKILASKGKKMIGWDEILEGG- 231 (357)
T ss_pred HHHHHHHHHHhCCCCeEEEeccccCCcccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCEEEEeecccccC-
Confidence 9999999999999999999999999999999999999999987 7789999999999999999999999999997532
Q ss_pred cccCCCCCCCCCEEEEecCCCCchHHHHHHhcCcEEeccCCceEEeCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCC
Q 044344 401 VNVRPSFLPKEHTILQTWNNGPNNTKRIVDAGYRAIVSSSEFYYLDCGHGDFLGNDSQYDQLQPSSSANNGGSWCGPFKT 480 (587)
Q Consensus 401 ~~~~~~~lp~~~~iv~~W~~~~~~~~~~~~~G~~vI~s~~~~~YlD~~~~~~~~~~~~y~~~~~~~~~~~g~~w~~~~~~ 480 (587)
++ ++++|+.|+++ ..+.+++++||+||+|+++++|||++++.+ + ..+..| +++.+
T Consensus 232 -------l~-~~~iv~~W~~~-~~~~~~~~~G~~vI~s~~~~~Yld~~~~~~------~---------~~~~~~-~~~~~ 286 (357)
T cd06563 232 -------LP-PNATVMSWRGE-DGGIKAAKQGYDVIMSPGQYLYLDYAQSKG------P---------DEPASW-AGFNT 286 (357)
T ss_pred -------CC-CCcEEEECCCc-hHHHHHHHCCCCEEEeCCCceEEecCCCCC------C---------CCCccc-cCCCC
Confidence 44 89999999986 577889999999999999999999976431 1 112344 56899
Q ss_pred cccccccCCCCCC-CHhhhcccceeeeeccccCC-CchhhHhHHHHHHHHHHhHhccCCCCCchhhhhHHHHHHHH
Q 044344 481 WQTIYDYDITYGL-SEEEAKMVIGGEVALWSEQA-DPKVLDVRLWPRTSAMAETLWSGNRDEETGIKRYAQATDRL 554 (587)
Q Consensus 481 ~~~~Y~~dp~~~l-~~~~~~~ilG~e~~lWsE~~-~~~~l~~~~~PR~~A~AE~~W~~~~~~~~~~~~~~~~~~Rl 554 (587)
|+++|+|+|.... +++.+++|+|+|+|||+|++ +++++++++|||++|+||++|+++. .++|++|..||
T Consensus 287 ~~~~y~~~P~~~~~~~~~~~~ilG~~~~lW~E~~~~~~~~~~~~~PR~~a~AE~~W~~~~-----~~~~~~f~~rl 357 (357)
T cd06563 287 LEKVYSFEPVPGGLTPEQAKRILGVQANLWTEYIPTPERVEYMAFPRLLALAEVAWTPPE-----KKDWEDFRKRL 357 (357)
T ss_pred HHHHhcCCCCCCCCChhHhcCEEEEEEEecccccCCHHHHHHHHHHHHHHHHHHHhCCcc-----CCCHHHHHhhC
Confidence 9999999997543 34678999999999999999 4678999999999999999999863 35788998886
No 5
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=6.9e-84 Score=669.87 Aligned_cols=309 Identities=33% Similarity=0.686 Sum_probs=275.7
Q ss_pred cccceeeeCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHH
Q 044344 179 FAHRGLILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGL 258 (587)
Q Consensus 179 f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~ 258 (587)
|+|||+|||+||||+|+++||++||.||++|||+||||||||||||+|+++||+|+++|+. +++||++||++||+||+
T Consensus 1 f~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~--~~~yT~~di~elv~yA~ 78 (311)
T cd06570 1 FPWRGLLIDVSRHFIPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASD--GLYYTQEQIREVVAYAR 78 (311)
T ss_pred CCccCeEEecCCCCcCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCC--CCccCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999874 57999999999999999
Q ss_pred hcCCEEEecCCCCCchhhHHHhCchhhhhcccCcCCCCCcccccccCCCCCCcCCCCChhHHHHHHHHHHHHHHhCCCCe
Q 044344 259 THGVRVLPEIDSPGHTGSWAEAYPEIVTCANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNLFPEAF 338 (587)
Q Consensus 259 ~rgI~VIPEID~PGH~~a~~~~~p~l~~c~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~Ev~~lF~~~~ 338 (587)
+|||+||||||+|||+.+|+++||+|..|...+. ....|+ ...++|||++|+|++|+++|++|++++||++|
T Consensus 79 ~rgI~vIPEId~PGH~~a~~~~ypel~~~~~~~~--~~~~~~------~~~~~l~~~~p~t~~f~~~l~~E~~~lF~~~~ 150 (311)
T cd06570 79 DRGIRVVPEIDVPGHASAIAVAYPELASGPGPYV--IERGWG------VFEPLLDPTNEETYTFLDNLFGEMAELFPDEY 150 (311)
T ss_pred HcCCEEEEeecCccchHHHHHhCHHhccCCCccc--cccccc------cCCCccCCCChhHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999976543211 111122 12358999999999999999999999999999
Q ss_pred eeeccCCcCCCCCCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCCCcccCCCCCCCCCEEEE
Q 044344 339 YHAGADEIIPGCWKADSTIQSFLSNGG--TLSQLLEKFVGSTLPYIVFFNRTVVYWEDVLLDDNVNVRPSFLPKEHTILQ 416 (587)
Q Consensus 339 iHIGgDEv~~~~w~~~p~~~~~~~~~~--~~~~l~~~f~~~~~~~l~~~gk~~~~W~d~~~~~~~~~~~~~lp~~~~iv~ 416 (587)
|||||||+...||.++|.|+++|+++| +..+++.+|++++.++++++||++++|+|++.. .++ ++++|+
T Consensus 151 iHiGgDE~~~~~W~~~p~~~~~~~~~g~~~~~~l~~~f~~~~~~~v~~~Gk~~~~W~d~~~~--------~l~-~~~iv~ 221 (311)
T cd06570 151 FHIGGDEVDPKQWNENPRIQAFMKEHGLKDAAALQAYFNQRVEKILSKHGKKMIGWDEVLHP--------DLP-KNVVIQ 221 (311)
T ss_pred eEeeccCCCCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCeEEEecccccc--------CCC-CCeEEE
Confidence 999999999999999999999999987 778999999999999999999999999998741 255 799999
Q ss_pred ecCCCCchHHHHHHhcCcEEeccCCceEEeCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccccccCCCCCCCHh
Q 044344 417 TWNNGPNNTKRIVDAGYRAIVSSSEFYYLDCGHGDFLGNDSQYDQLQPSSSANNGGSWCGPFKTWQTIYDYDITYGLSEE 496 (587)
Q Consensus 417 ~W~~~~~~~~~~~~~G~~vI~s~~~~~YlD~~~~~~~~~~~~y~~~~~~~~~~~g~~w~~~~~~~~~~Y~~dp~~~l~~~ 496 (587)
.|.+ ...+.+++++||+||+|++ +|||+++ +++++|++||.
T Consensus 222 ~W~~-~~~~~~~~~~G~~vI~s~~--~YlD~~~------------------------------~~~~~y~~~p~------ 262 (311)
T cd06570 222 SWRG-HDSLGEAAKAGYQGILSTG--YYIDQPQ------------------------------PAAYHYRVDPM------ 262 (311)
T ss_pred EeCC-chHHHHHHHCCCCEEEech--hheeCCC------------------------------chhheeCCCCc------
Confidence 9996 4568889999999999986 8999753 13467888873
Q ss_pred hhcccceeeeeccccCCCchhhHhHHHHHHHHHHhHhccCCCCCchhhhhHHHHHHHH
Q 044344 497 EAKMVIGGEVALWSEQADPKVLDVRLWPRTSAMAETLWSGNRDEETGIKRYAQATDRL 554 (587)
Q Consensus 497 ~~~~ilG~e~~lWsE~~~~~~l~~~~~PR~~A~AE~~W~~~~~~~~~~~~~~~~~~Rl 554 (587)
|+|||+|||||++++.++++++|||++|+||++||++. .+++++|.+||
T Consensus 263 ----ilG~~~~lW~E~v~~~~~~~~~~PR~~A~AE~~Ws~~~-----~~~~~~~~~Rl 311 (311)
T cd06570 263 ----ILGGEATMWAELVSEETIDSRLWPRTAAIAERLWSAQD-----VRDEDDMYRRL 311 (311)
T ss_pred ----EEEEEEEEeecCcCHHHHHHHHhHHHHHHHHHhhCCCc-----CCCHHHHHhhC
Confidence 99999999999999889999999999999999999863 35688898886
No 6
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=100.00 E-value=2.1e-82 Score=664.95 Aligned_cols=321 Identities=29% Similarity=0.500 Sum_probs=279.1
Q ss_pred cccceeeeCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCC-----CCCCCCHHHHHHH
Q 044344 179 FAHRGLILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYG-----HDMQYSPDDVKKI 253 (587)
Q Consensus 179 f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~-----~~~~YT~~ei~ei 253 (587)
|+|||+|||+||||+|+++||++||.||++|||+|||||+||||||+|+++||+||..|+++ .+++||++||++|
T Consensus 1 f~~RG~mlD~aR~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~el 80 (329)
T cd06568 1 FAYRGLMLDVARHFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDI 80 (329)
T ss_pred CCccceeeeccCCCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999874 5689999999999
Q ss_pred HHHHHhcCCEEEecCCCCCchhhHHHhCchhhhhcccCcCCCCCcccccccCCCCCCcCCCCChhHHHHHHHHHHHHHHh
Q 044344 254 VEFGLTHGVRVLPEIDSPGHTGSWAEAYPEIVTCANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNL 333 (587)
Q Consensus 254 v~yA~~rgI~VIPEID~PGH~~a~~~~~p~l~~c~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~Ev~~l 333 (587)
|+||++|||+||||||+|||+.+++++||+|. |.+.. . ....+.+++.++|||++|+|++|+++|++|++++
T Consensus 81 v~yA~~rgI~vIPEiD~PGH~~a~~~~~p~l~-~~~~~-----~--~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~ 152 (329)
T cd06568 81 VAYAAERHITVVPEIDMPGHTNAALAAYPELN-CDGKA-----K--PLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAAL 152 (329)
T ss_pred HHHHHHcCCEEEEecCCcHHHHHHHHhChhhc-cCCCC-----C--ccccccCCCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999995 43211 0 0112233456789999999999999999999999
Q ss_pred CCCCeeeeccCCcCCCCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCCCcccCCCCCCCCCE
Q 044344 334 FPEAFYHAGADEIIPGCWKADSTIQSFLSNGGTLSQLLEKFVGSTLPYIVFFNRTVVYWEDVLLDDNVNVRPSFLPKEHT 413 (587)
Q Consensus 334 F~~~~iHIGgDEv~~~~w~~~p~~~~~~~~~~~~~~l~~~f~~~~~~~l~~~gk~~~~W~d~~~~~~~~~~~~~lp~~~~ 413 (587)
||+++|||||||+... ..+++.+|++++.++++++||++++|+|++.. .++ +++
T Consensus 153 f~~~~iHiGgDE~~~~-----------------~~~~~~~f~~~~~~~v~~~Gk~~~~W~d~~~~--------~l~-~~~ 206 (329)
T cd06568 153 TPGPYIHIGGDEAHST-----------------PHDDYAYFVNRVRAIVAKYGKTPVGWQEIARA--------DLP-AGT 206 (329)
T ss_pred CCCCeEEEecccCCCC-----------------chHHHHHHHHHHHHHHHHCCCeEEEECccccc--------CCC-CCe
Confidence 9999999999999753 23578899999999999999999999998642 245 899
Q ss_pred EEEecCCCC--chHHHHHHhcCcEEeccCCceEEeCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccccccCCCC
Q 044344 414 ILQTWNNGP--NNTKRIVDAGYRAIVSSSEFYYLDCGHGDFLGNDSQYDQLQPSSSANNGGSWCGPFKTWQTIYDYDITY 491 (587)
Q Consensus 414 iv~~W~~~~--~~~~~~~~~G~~vI~s~~~~~YlD~~~~~~~~~~~~y~~~~~~~~~~~g~~w~~~~~~~~~~Y~~dp~~ 491 (587)
+|+.|+++. ..+++++++||+||+|+++++|||++++. ....|..||+ +.+|+++|+|+|..
T Consensus 207 iv~~W~~~~~~~~~~~~~~~G~~vI~s~~~~~YlD~~~~~---------------~~~~~~~~~~-~~~~~~~y~~~P~~ 270 (329)
T cd06568 207 VAQYWSDRAPDADAAAALDKGAKVILSPADKAYLDMKYDA---------------DSPLGLTWAG-PVEVREAYDWDPAA 270 (329)
T ss_pred EEEECCCCCCchHHHHHHHCCCCEEEeCCCcEEEecCCCC---------------CCCCCcccCC-CCCHHHHeeeCCCC
Confidence 999999863 57889999999999999999999997531 1234567876 67999999999976
Q ss_pred CCCHhhhcccceeeeeccccCCCc-hhhHhHHHHHHHHHHhHhccCCCCCchhhhhHHHHHHHH
Q 044344 492 GLSEEEAKMVIGGEVALWSEQADP-KVLDVRLWPRTSAMAETLWSGNRDEETGIKRYAQATDRL 554 (587)
Q Consensus 492 ~l~~~~~~~ilG~e~~lWsE~~~~-~~l~~~~~PR~~A~AE~~W~~~~~~~~~~~~~~~~~~Rl 554 (587)
....+.+++|+|||+|||||+++. +++++++|||++|+|||+|+++. .++|.+|.+||
T Consensus 271 ~~~~~~~~~ilG~~~~lW~E~~~~~~~~~~~~~PR~~a~AE~~Ws~~~-----~~~~~~f~~rl 329 (329)
T cd06568 271 YGPGVPDEAILGVEAPLWTETIRNLDDLEYMAFPRLAGVAEIGWSPQE-----ARDWDDYKVRL 329 (329)
T ss_pred CCCcchhhCEEEEEEeecccccCCHHHHHHHHHhHHHHHHHHHhCCCc-----CCCHHHHHhhC
Confidence 555556789999999999999974 68999999999999999999863 35688888875
No 7
>COG3525 Chb N-acetyl-beta-hexosaminidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.4e-78 Score=646.84 Aligned_cols=416 Identities=27% Similarity=0.465 Sum_probs=356.8
Q ss_pred CCcceEEEeecCCCeEEEEecChhhhhHHHHHHHHhhcCC----CCeeeeeceEEEccCCcccceeeeCCCCCCCChHHH
Q 044344 123 VNETYTLSIPADASIANLTAHTVWGAMRGLETFSQLVWGK----PNLLVASGLYVWDSPLFAHRGLILDTSRNYYGVDDI 198 (587)
Q Consensus 123 ~~E~Y~L~i~~~~~~i~I~a~~~~G~~~g~~Tl~Ql~~~~----~~~~~p~~~~I~D~P~f~~RG~mlD~aR~f~~~~~l 198 (587)
..|.|+|.++ ...|+|+|.+.+|+|||++||.||+.+. +.+.+| .++|.|+|||.|||+|+|+||||+|++++
T Consensus 204 ~~e~y~la~~--d~ai~v~a~~~aG~~y~~~tl~qL~t~a~s~qg~~~~p-~~~I~DaPRf~~rGllvDvaRqf~s~~~v 280 (732)
T COG3525 204 GEEAYRLAIN--DKAIKVTAHDLAGLFYADGTLLQLDTSADSFQGDIRFP-AVTIVDAPRFAWRGLLVDVARQFHSTDDV 280 (732)
T ss_pred cchhheeecc--cceeEEeeccccchhhhHHHHHhhhccccccCCCeeee-eeecccCcccchhhhhHhhhhhcCCHHHH
Confidence 6899999999 4679999999999999999999998732 236899 78899999999999999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCC----------------CCCCCHHHHHHHHHHHHhcCC
Q 044344 199 LRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGH----------------DMQYSPDDVKKIVEFGLTHGV 262 (587)
Q Consensus 199 k~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~----------------~~~YT~~ei~eiv~yA~~rgI 262 (587)
|++||.|+.+|||+|||||+||||||+||+++|+||.+|+|+. ++|||++++++|++||++|+|
T Consensus 281 k~~Id~laa~Kln~~hlHLtddegwrleIk~~PkLT~iga~R~~de~~~Pq~g~~pe~~ggfytqd~~relv~yAsar~I 360 (732)
T COG3525 281 KRLIDQLAAHKLNVLHLHLTDDEGWRLEIKRYPKLTTIGAWRIPDEPDLPQLGYGPERMGGFYTQDDIRELVAYASARQI 360 (732)
T ss_pred HHHHHHHHHhhcceEEEeeccCcceeeccccCCccccccccccCCCcCCcccccCcccccCcccHHHHHHHHHHHhhcCc
Confidence 9999999999999999999999999999999999999999864 389999999999999999999
Q ss_pred EEEecCCCCCchhhHHHhCchhhhhcccCcCCCCCcccccccCCCCCCcCCCCChhHHHHHHHHHHHHHHhCCCCeeeec
Q 044344 263 RVLPEIDSPGHTGSWAEAYPEIVTCANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNLFPEAFYHAG 342 (587)
Q Consensus 263 ~VIPEID~PGH~~a~~~~~p~l~~c~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~Ev~~lF~~~~iHIG 342 (587)
+||||||+|||+.+.+.++|++..-... |+. .+.........|||+-+-+++|+++|++||.++||+.+||||
T Consensus 361 tviPeiD~PgHa~aav~A~p~~~l~~a~---~ds----~~sv~~~~n~~ln~tl~~t~~fldkv~dEv~~lfPs~~iHiG 433 (732)
T COG3525 361 TVIPEIDMPGHARAAVVAYPDLNLGRAD---PDS----YDSVQAYLNPVLNPTLDPTYQFLDKVLDEVADLFPSTTIHIG 433 (732)
T ss_pred eecCCcCCcchhhhhhhhCccccccccC---CCc----chhhhhcccccccccccHHHHHHHHHHHHHHHhCCcceEEec
Confidence 9999999999999999999966321100 110 111111223479999999999999999999999999999999
Q ss_pred cCCcCCCCCCC-CHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCCCcccCCCCCCCCCEEEEecC
Q 044344 343 ADEIIPGCWKA-DSTIQSFLSNGG--TLSQLLEKFVGSTLPYIVFFNRTVVYWEDVLLDDNVNVRPSFLPKEHTILQTWN 419 (587)
Q Consensus 343 gDEv~~~~w~~-~p~~~~~~~~~~--~~~~l~~~f~~~~~~~l~~~gk~~~~W~d~~~~~~~~~~~~~lp~~~~iv~~W~ 419 (587)
|||+..+.|+. +|.|++.|++.| +..+++.+|++++.+++.++|++.++|+|.+..++.. ...+- +++.+++|.
T Consensus 434 gDE~~~~qwk~~sp~~q~l~~~~G~~d~~~lq~~fi~q~~k~l~~~Gr~~igW~e~~~~~~~~--~~~~t-~~~~vm~W~ 510 (732)
T COG3525 434 GDEFIDGQWKASSPLVQALMEKLGNKDTFELQSYFITQVGKTLASKGRRLIGWDEGAHGGDVN--GTALT-ANVTVMSWY 510 (732)
T ss_pred cchhccCeeeccCHHHHHHHHHhccCCcchhhHHHHHHHHHHHHhcCceEEeecchhccCCCc--ccccc-CceEEEEEe
Confidence 99999999999 999999999877 5689999999999999999999999999999765532 12222 799999999
Q ss_pred CCCchHHHHHHhcCcEEeccCCceEEeCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccccccCCC--CCCCHhh
Q 044344 420 NGPNNTKRIVDAGYRAIVSSSEFYYLDCGHGDFLGNDSQYDQLQPSSSANNGGSWCGPFKTWQTIYDYDIT--YGLSEEE 497 (587)
Q Consensus 420 ~~~~~~~~~~~~G~~vI~s~~~~~YlD~~~~~~~~~~~~y~~~~~~~~~~~g~~w~~~~~~~~~~Y~~dp~--~~l~~~~ 497 (587)
+ .+....++++||+||++++.++|||+.+. . .+.++|.+|.+....-+..|.++|. ..+.++.
T Consensus 511 ~-~~~ai~~akqg~dvv~tp~~~~ylD~~q~--------~------~peepg~~~a~t~~l~r~~y~~~~~g~~~~~de~ 575 (732)
T COG3525 511 G-KDKAIELAKQGYDVVLTPAQFVYLDMLQI--------A------APEEPGYSWATTTPLERNKYAYDFAGKQPINDEL 575 (732)
T ss_pred c-chhhHHHHhhcccccccchhhhhhhhhcc--------c------ccccCCCccccccccchhhhhhcccCcccCChHH
Confidence 6 56778899999999999999999998652 1 3466788888643333338887774 3344788
Q ss_pred hcccceeeeeccccCCC-chhhHhHHHHHHHHHHhHhccCCCCCchhhhhHHHHHHHHHHHHHHHHHCCCCCCCC
Q 044344 498 AKMVIGGEVALWSEQAD-PKVLDVRLWPRTSAMAETLWSGNRDEETGIKRYAQATDRLNEWRYRMVSRGVGAEPI 571 (587)
Q Consensus 498 ~~~ilG~e~~lWsE~~~-~~~l~~~~~PR~~A~AE~~W~~~~~~~~~~~~~~~~~~Rl~~~~~~l~~~gi~~~p~ 571 (587)
++.++|.|+|+|+|++. ...+++++|||++|+|||+|++. ..+|+..+..|+..+..+++..+|.+.+.
T Consensus 576 ~k~~~G~q~~lWse~~~~~~~f~~~vfprl~a~aEraw~p~-----a~~Dw~~~~~r~~~~~~l~~~~~~~~~~~ 645 (732)
T COG3525 576 AKRILGVQAALWSEHIQTRGRFEYMVFPRLAAAAERAWTPM-----AFNDWLYYLDRLSAQLPLLVLISIPYNAW 645 (732)
T ss_pred hhhhhhhHHHHHHHHhhhhhHHHHHhcchHHHHHHhhCCch-----hhcchhhhhhhcchhcchhhhhccccccc
Confidence 99999999999999986 46899999999999999999985 35678999999999999999999887653
No 8
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=100.00 E-value=1.4e-77 Score=635.58 Aligned_cols=335 Identities=37% Similarity=0.790 Sum_probs=282.0
Q ss_pred cccceeeeCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCC---CCCHHHHHHHHH
Q 044344 179 FAHRGLILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDM---QYSPDDVKKIVE 255 (587)
Q Consensus 179 f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~---~YT~~ei~eiv~ 255 (587)
|+|||+|||+||||+|+++||++||.||.+|||+|||||+|+||||++++++|+|+..|++++.. +||++||++||+
T Consensus 1 f~~RG~~lD~aR~~~~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~ 80 (351)
T PF00728_consen 1 FPWRGLMLDVARHFFSVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVA 80 (351)
T ss_dssp SSEEEEEEETSSS-B-HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHH
T ss_pred CCccceeeccCCCCCCHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999998855 999999999999
Q ss_pred HHHhcCCEEEecCCCCCchhhHHHhCchhhhhcccCcCCCCCcccccccCCCCCCcCCCCChhHHHHHHHHHHHHHHhCC
Q 044344 256 FGLTHGVRVLPEIDSPGHTGSWAEAYPEIVTCANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNLFP 335 (587)
Q Consensus 256 yA~~rgI~VIPEID~PGH~~a~~~~~p~l~~c~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~Ev~~lF~ 335 (587)
||++|||+||||||+|||+.+++++||++..+. ++....+....+..+.+++|||++|+|++|+++|++|++++|+
T Consensus 81 yA~~~gI~VIPeid~PGH~~~~l~~~p~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~ 156 (351)
T PF00728_consen 81 YAKERGIEVIPEIDTPGHAEAWLKAYPELGCSA----WPEDKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADLFP 156 (351)
T ss_dssp HHHHTT-EEEEEEEESSS-HHHHHHHHHHCCCH----TTCSSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCceeeeccCchHHHHHHHhCchhhccc----cccccccccccccCCCcccCCCCcHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999996541 0111112222233334568999999999999999999999999
Q ss_pred CCeeeeccCCcCCCCCCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCCCcccCCCCCCCCCE
Q 044344 336 EAFYHAGADEIIPGCWKADSTIQSFLSNGG--TLSQLLEKFVGSTLPYIVFFNRTVVYWEDVLLDDNVNVRPSFLPKEHT 413 (587)
Q Consensus 336 ~~~iHIGgDEv~~~~w~~~p~~~~~~~~~~--~~~~l~~~f~~~~~~~l~~~gk~~~~W~d~~~~~~~~~~~~~lp~~~~ 413 (587)
+++||||||||+..||.++|+|+++|+++| +..+++.+|++++.++++++|+++++|+|++.+.+. ...++ +++
T Consensus 157 ~~~iHiGgDEv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~v~~~g~~~~~W~D~~~~~~~---~~~~~-~~~ 232 (351)
T PF00728_consen 157 SKYIHIGGDEVNYNCWNNSPECQAWMKQNGLTDPNDLFQYFVNRLADIVKKHGKKPIIWNDMLDDFPD---ASLLP-KDV 232 (351)
T ss_dssp SSEEEEE-TSTTTHHHHCHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHTTSEEEEESTTTTTTCC---GHCSC-TTE
T ss_pred CCeEEeCCcccccccccCCHHHhhHHhhcCCchHHHHHHHHHHHHHHHHHhcCCcEEEEccccccCCc---ccccc-CCc
Confidence 999999999999999999999999999987 789999999999999999999999999999986652 12355 899
Q ss_pred EEEecCCCC--chHHHHHHhcCcEEeccCCceEEeCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccccccCCCC
Q 044344 414 ILQTWNNGP--NNTKRIVDAGYRAIVSSSEFYYLDCGHGDFLGNDSQYDQLQPSSSANNGGSWCGPFKTWQTIYDYDITY 491 (587)
Q Consensus 414 iv~~W~~~~--~~~~~~~~~G~~vI~s~~~~~YlD~~~~~~~~~~~~y~~~~~~~~~~~g~~w~~~~~~~~~~Y~~dp~~ 491 (587)
+|+.|++++ ..+.+++++||++|+++.+++|+|++++.+.. ..|..|+. +.+|+++|+|+|..
T Consensus 233 ~i~~W~~~~~~~~~~~~~~~g~~vI~s~~~~~Yld~~~~~~~~--------------~~~~~~~~-~~~~~~~~~~~~~~ 297 (351)
T PF00728_consen 233 IIQVWNYDWGPASAQEFAKKGYKVINSPSDYLYLDPGQSPWPE--------------EDGNYWAP-FNTWSDFYNWDPAY 297 (351)
T ss_dssp EEEEESSTTHHHHHHHHHHTTHEEEESTHGTGBTTTTSSTTTS--------------SSSBHTTS-THHHHHHHHHHHCH
T ss_pred eEEEeeccccchhhhHHHHhcCcEEEcCCCceEEccCcCCCCc--------------cCcccccc-cccccccccccccc
Confidence 999999854 45788999999999999999999998754321 23344543 67889999998853
Q ss_pred C------CCHhhh-cccceeeeeccccCC-CchhhHhHHHHHHHHHHhHhccC
Q 044344 492 G------LSEEEA-KMVIGGEVALWSEQA-DPKVLDVRLWPRTSAMAETLWSG 536 (587)
Q Consensus 492 ~------l~~~~~-~~ilG~e~~lWsE~~-~~~~l~~~~~PR~~A~AE~~W~~ 536 (587)
. +.+.++ ++|+|+++|||+|.+ +++.+++++|||++|+||++|++
T Consensus 298 ~~~~~~~~~~~~~~~~i~G~~~~~W~E~~~~~~~l~~~~~Pr~~A~AE~~Ws~ 350 (351)
T PF00728_consen 298 FNTNSTQIDPAQKSERILGGEAALWSENIRDEEDLDYRLWPRLAALAERLWSP 350 (351)
T ss_dssp CTTTCSTTTTHHHCCCEEEEEEEEETTTTTSHHHHHHHHTTHHHHHHHHHHSS
T ss_pred cccccchhhhhcccCCCceeEEEeecCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 2 223444 599999999999999 67899999999999999999996
No 9
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=1.6e-74 Score=600.61 Aligned_cols=293 Identities=29% Similarity=0.555 Sum_probs=257.8
Q ss_pred cceeeeCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCC----CCCCCCCCCHHHHHHHHHH
Q 044344 181 HRGLILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKG----SYGHDMQYSPDDVKKIVEF 256 (587)
Q Consensus 181 ~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~g----a~~~~~~YT~~ei~eiv~y 256 (587)
|||+|||+||||+|+++||++||.||.+|||+|||||+||||||+|+++||+|+++| +++.+++||++||++||+|
T Consensus 1 ~RG~mlD~aR~~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~y 80 (303)
T cd02742 1 IRGIMLDVSRHFLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEY 80 (303)
T ss_pred CcceeeeccccCcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999998 4567889999999999999
Q ss_pred HHhcCCEEEecCCCCCchhhHHHhCchhhh-hcccCcCCCCCcccccccCCCCCCcCCCCChhHHHHHHHHHHHHHHhCC
Q 044344 257 GLTHGVRVLPEIDSPGHTGSWAEAYPEIVT-CANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNLFP 335 (587)
Q Consensus 257 A~~rgI~VIPEID~PGH~~a~~~~~p~l~~-c~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~Ev~~lF~ 335 (587)
|++|||+||||||+|||+.+++++||++.. |.. +..| ....++|||++|+|++|+++|++|++++||
T Consensus 81 A~~rgI~viPEiD~PGH~~a~~~~~p~l~~~~~~------~~~~------~~~~~~l~~~~~~t~~fl~~l~~e~~~lf~ 148 (303)
T cd02742 81 AAARGIEVIPEIDMPGHSTAFVKSFPKLLTECYA------GLKL------RDVFDPLDPTLPKGYDFLDDLFGEIAELFP 148 (303)
T ss_pred HHHcCCEEEEeccchHHHHHHHHhCHHhccCccc------cCCC------CCCCCccCCCCccHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999853 211 1111 123468999999999999999999999999
Q ss_pred CCeeeeccCCcCCCCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCCCcccCCCCCCCCCEEE
Q 044344 336 EAFYHAGADEIIPGCWKADSTIQSFLSNGGTLSQLLEKFVGSTLPYIVFFNRTVVYWEDVLLDDNVNVRPSFLPKEHTIL 415 (587)
Q Consensus 336 ~~~iHIGgDEv~~~~w~~~p~~~~~~~~~~~~~~l~~~f~~~~~~~l~~~gk~~~~W~d~~~~~~~~~~~~~lp~~~~iv 415 (587)
+++|||||||+... .+..+++.+|++++.++++++|+++++|+|++.... .++ ++++|
T Consensus 149 ~~~iHiGgDE~~~~---------------~~~~~l~~~f~~~~~~~v~~~g~~~~~W~d~~~~~~------~l~-~~~ii 206 (303)
T cd02742 149 DRYLHIGGDEAHFK---------------QDRKHLMSQFIQRVLDIVKKKGKKVIVWQDGFDKKM------KLK-EDVIV 206 (303)
T ss_pred CCeEEecceecCCC---------------CCHHHHHHHHHHHHHHHHHHcCCeEEEecccccCCC------CCC-CCeEE
Confidence 99999999999754 145689999999999999999999999999986432 355 89999
Q ss_pred EecCCCC----chHHHHHHhcCcEEeccCCceEEeCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccccccCCCC
Q 044344 416 QTWNNGP----NNTKRIVDAGYRAIVSSSEFYYLDCGHGDFLGNDSQYDQLQPSSSANNGGSWCGPFKTWQTIYDYDITY 491 (587)
Q Consensus 416 ~~W~~~~----~~~~~~~~~G~~vI~s~~~~~YlD~~~~~~~~~~~~y~~~~~~~~~~~g~~w~~~~~~~~~~Y~~dp~~ 491 (587)
+.|+++. ..+.+++++||+||+|++.|+|+.. ..+.+|+++|+++|..
T Consensus 207 ~~W~~~~~~~~~~~~~~~~~G~~vi~s~~~yly~~~----------------------------~~~~~~~~~y~~~p~~ 258 (303)
T cd02742 207 QYWDYDGDKYNVELPEAAAKGFPVILSNGYYLDIFI----------------------------DGALDARKVYKNDPLA 258 (303)
T ss_pred EEccCCCCcchHHHHHHHHCCCCEEEeCCceeeeeC----------------------------CCCCCHHHHhCCCCCC
Confidence 9999864 5678899999999999997777610 0145689999999876
Q ss_pred CCCHhhhcccceeeeeccccCCCch-hhHhHHHHHHHHHHhHhcc
Q 044344 492 GLSEEEAKMVIGGEVALWSEQADPK-VLDVRLWPRTSAMAETLWS 535 (587)
Q Consensus 492 ~l~~~~~~~ilG~e~~lWsE~~~~~-~l~~~~~PR~~A~AE~~W~ 535 (587)
..+++.+++|+|+++|||+|++++. .+++++|||++|+||++||
T Consensus 259 ~~~~~~~~~vlG~~~~lW~E~~~~~~~~~~~~~pr~~a~AE~~Ws 303 (303)
T cd02742 259 VPTPQQKDLVLGVIACLWGETVKDTKTLQYRFWPRALAVAERSWS 303 (303)
T ss_pred CCCcccccceEEEEEeeeccccCCHHHHHHHHHHHHHHHHHHhhC
Confidence 5566678899999999999999865 8999999999999999997
No 10
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=8.2e-72 Score=586.07 Aligned_cols=299 Identities=26% Similarity=0.497 Sum_probs=256.1
Q ss_pred ccceeeeCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCC---------------CCCCC
Q 044344 180 AHRGLILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSY---------------GHDMQ 244 (587)
Q Consensus 180 ~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~---------------~~~~~ 244 (587)
++||+|||+||||+|+++||++||.||++|||+|||||+| +||++++.+|+++..|++ +.+++
T Consensus 1 ~~RG~mLD~aR~~~~~~~ik~~id~ma~~K~N~lhlHltD--~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (326)
T cd06564 1 EVRGFMLDVGRKYYSMDFLKDIIKTMSWYKMNDLQLHLND--NLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGY 78 (326)
T ss_pred CcceeEEEccCCCCCHHHHHHHHHHHHHcCCceEEEeecC--CcccccCCCchhhhhhhhhccccccccccCCCCCCCCc
Confidence 4899999999999999999999999999999999999999 899999999999976543 45789
Q ss_pred CCHHHHHHHHHHHHhcCCEEEecCCCCCchhhHHHhCchhhhhcccCcCCCCCcccccccCCCCCCcCCCCChhHHHHHH
Q 044344 245 YSPDDVKKIVEFGLTHGVRVLPEIDSPGHTGSWAEAYPEIVTCANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKILK 324 (587)
Q Consensus 245 YT~~ei~eiv~yA~~rgI~VIPEID~PGH~~a~~~~~p~l~~c~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~ 324 (587)
||++|||+||+||++|||+||||||+|||+.+|+++||++..+.. ...+..++|||++|+|++|++
T Consensus 79 YT~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~~pel~~~~~--------------~~~~~~~~l~~~~~~t~~f~~ 144 (326)
T cd06564 79 YTKEEFKELIAYAKDRGVNIIPEIDSPGHSLAFTKAMPELGLKNP--------------FSKYDKDTLDISNPEAVKFVK 144 (326)
T ss_pred ccHHHHHHHHHHHHHcCCeEeccCCCcHHHHHHHHhhHHhcCCCc--------------ccCCCcccccCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999964321 012345789999999999999
Q ss_pred HHHHHHHHhCC--CCeeeeccCCcCCCCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCCCcc
Q 044344 325 NVINDIVNLFP--EAFYHAGADEIIPGCWKADSTIQSFLSNGGTLSQLLEKFVGSTLPYIVFFNRTVVYWEDVLLDDNVN 402 (587)
Q Consensus 325 ~v~~Ev~~lF~--~~~iHIGgDEv~~~~w~~~p~~~~~~~~~~~~~~l~~~f~~~~~~~l~~~gk~~~~W~d~~~~~~~~ 402 (587)
+|++|++++|+ ++||||||||+... .+..+++.+|+++++++|+++||++++|+|++...+.
T Consensus 145 ~l~~E~~~~f~~~~~~~HiGgDE~~~~---------------~~~~~~~~~f~~~~~~~v~~~gk~~~~W~d~~~~~~~- 208 (326)
T cd06564 145 ALFDEYLDGFNPKSDTVHIGADEYAGD---------------AGYAEAFRAYVNDLAKYVKDKGKTPRVWGDGIYYKGD- 208 (326)
T ss_pred HHHHHHHHhcCCCCCEEEecccccccc---------------CccHHHHHHHHHHHHHHHHHcCCeEEEeCCcccCCCC-
Confidence 99999999999 99999999999864 1456789999999999999999999999999875431
Q ss_pred cCCCCCCCCCEEEEecCCCCchHHHHHHhcCcEEeccCCceEEeCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcc
Q 044344 403 VRPSFLPKEHTILQTWNNGPNNTKRIVDAGYRAIVSSSEFYYLDCGHGDFLGNDSQYDQLQPSSSANNGGSWCGPFKTWQ 482 (587)
Q Consensus 403 ~~~~~lp~~~~iv~~W~~~~~~~~~~~~~G~~vI~s~~~~~YlD~~~~~~~~~~~~y~~~~~~~~~~~g~~w~~~~~~~~ 482 (587)
...++ ++++|+.|+++...+.+++++||+||+|+++++|||++++.| . .+.+++
T Consensus 209 --~~~l~-~~~iv~~W~~~~~~~~~~~~~G~~vI~s~~~~~Y~~~~~~~~----------------------~-~~~~~~ 262 (326)
T cd06564 209 --TTVLS-KDVIINYWSYGWADPKELLNKGYKIINTNDGYLYIVPGAGYY----------------------G-DYLNTE 262 (326)
T ss_pred --cccCC-CCeEEEeCCCcccCHHHHHHCCCcEEEeCCCcEEEeCCCccC----------------------C-CccCHH
Confidence 13466 899999999866678899999999999999999999865321 0 134567
Q ss_pred cccccCCCCC------CCHhhhcccceeeeeccccCCC----chhhHhHHHHHHHHHHhHhccC
Q 044344 483 TIYDYDITYG------LSEEEAKMVIGGEVALWSEQAD----PKVLDVRLWPRTSAMAETLWSG 536 (587)
Q Consensus 483 ~~Y~~dp~~~------l~~~~~~~ilG~e~~lWsE~~~----~~~l~~~~~PR~~A~AE~~W~~ 536 (587)
++|++.+... ..++.+++|+|+++|||+|.++ +..+++++|||++|+||++|++
T Consensus 263 ~~y~~~~~~~~~~~~~~~~~~~~~ilG~~~~lW~E~~~~~~t~~~~~~~~~pr~~a~Ae~~W~~ 326 (326)
T cd06564 263 DIYNNWTPNKFGGTNATLPEGDPQILGGMFAIWNDDSDAGISEVDIYDRIFPALPAFAEKTWGG 326 (326)
T ss_pred HHHhcCCccccCCCCccCCCCCCCcchhheeeecCCCCcCcCHHHHHHHHHHHHHHHHHHhcCC
Confidence 7776544211 3345678999999999999995 4789999999999999999985
No 11
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=7.3e-51 Score=422.39 Aligned_cols=297 Identities=20% Similarity=0.308 Sum_probs=225.6
Q ss_pred cceeeeCCCC-CCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHh
Q 044344 181 HRGLILDTSR-NYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLT 259 (587)
Q Consensus 181 ~RG~mlD~aR-~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~ 259 (587)
+||+|||+|| +|+++++||++||.||.+|+|+||||++|+ | +++++|++.. .+++||++||++|++||++
T Consensus 1 ~RG~mlD~~R~~~~~~~~lk~~id~ma~~k~N~l~lhl~D~--f--~~~~~p~~~~-----~~~~yT~~ei~ei~~yA~~ 71 (301)
T cd06565 1 FRGVHLDLKRNAVPKVSYLKKLLRLLALLGANGLLLYYEDT--F--PYEGEPEVGR-----MRGAYTKEEIREIDDYAAE 71 (301)
T ss_pred CceEEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEecc--e--ecCCCccccc-----CCCCcCHHHHHHHHHHHHH
Confidence 5999999999 999999999999999999999999999994 4 4468888753 2468999999999999999
Q ss_pred cCCEEEecCCCCCchhhHHHhCchhhhhcccCcCCCCCcccccccCCCCCCcCCCCChhHHHHHHHHHHHHHHhCCCCee
Q 044344 260 HGVRVLPEIDSPGHTGSWAEAYPEIVTCANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNLFPEAFY 339 (587)
Q Consensus 260 rgI~VIPEID~PGH~~a~~~~~p~l~~c~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~Ev~~lF~~~~i 339 (587)
|||+||||||+|||+.++++ +|++....+ ...+.++|||++|+|++|+++|++|++++|++++|
T Consensus 72 ~gI~vIPeid~pGH~~~~l~-~~~~~~l~~---------------~~~~~~~l~~~~~~t~~fi~~li~ev~~~f~s~~~ 135 (301)
T cd06565 72 LGIEVIPLIQTLGHLEFILK-HPEFRHLRE---------------VDDPPQTLCPGEPKTYDFIEEMIRQVLELHPSKYI 135 (301)
T ss_pred cCCEEEecCCCHHHHHHHHh-Ccccccccc---------------cCCCCCccCCCChhHHHHHHHHHHHHHHhCCCCeE
Confidence 99999999999999999987 455532110 11235789999999999999999999999999999
Q ss_pred eeccCCcCCCCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCeEEEEcccccC---CCcccCCCCCCCCCEEEE
Q 044344 340 HAGADEIIPGCWKADSTIQSFLSNGGTLSQLLEKFVGSTLPYIVFFNRTVVYWEDVLLD---DNVNVRPSFLPKEHTILQ 416 (587)
Q Consensus 340 HIGgDEv~~~~w~~~p~~~~~~~~~~~~~~l~~~f~~~~~~~l~~~gk~~~~W~d~~~~---~~~~~~~~~lp~~~~iv~ 416 (587)
||||||+...+ .++.++++ ...+..+++..|+++++++++++|+++++|+|++.. .+.. ...+| ++++++
T Consensus 136 HIG~DE~~~~g--~~~~~~~~--~~~~~~~l~~~~~~~v~~~v~~~g~~~~~W~D~~~~~~~~~~~--~~~l~-~~v~~~ 208 (301)
T cd06565 136 HIGMDEAYDLG--RGRSLRKH--GNLGRGELYLEHLKKVLKIIKKRGPKPMMWDDMLRKLSIEPEA--LSGLP-KLVTPV 208 (301)
T ss_pred EECCCcccccC--CCHHHHHh--cCCCHHHHHHHHHHHHHHHHHHcCCEEEEEhHHhcCCCCChHH--HhCCC-CCeEEE
Confidence 99999998754 34455543 233788999999999999999999999999999975 2211 13577 899999
Q ss_pred ecCCCCchHHHHHHhcCcEEeccCCceEEeCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccccccCCCCCCCHh
Q 044344 417 TWNNGPNNTKRIVDAGYRAIVSSSEFYYLDCGHGDFLGNDSQYDQLQPSSSANNGGSWCGPFKTWQTIYDYDITYGLSEE 496 (587)
Q Consensus 417 ~W~~~~~~~~~~~~~G~~vI~s~~~~~YlD~~~~~~~~~~~~y~~~~~~~~~~~g~~w~~~~~~~~~~Y~~dp~~~l~~~ 496 (587)
+|+++.+.... +++.+.+...+..+|+.+|.+.|.+..+.++ ...+.+-++ +...
T Consensus 209 ~W~y~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~------------------~~~~n~~~~-----~~~~ 263 (301)
T cd06565 209 VWDYYADLDEH--DRPIGLWKKYGSVFAVAWGASAWKGATPPND------------------KHLENIKSW-----LKAA 263 (301)
T ss_pred EecCcCCcchh--hHhHHHHHHhCCCceEeeeechhccCCCCHH------------------HHHHHHHHH-----HHHH
Confidence 99986543221 3344444444444666666554433211110 001111111 2234
Q ss_pred hhcccceeeeeccccCCCchhhHhHHHHHHHHHHhHhcc
Q 044344 497 EAKMVIGGEVALWSEQADPKVLDVRLWPRTSAMAETLWS 535 (587)
Q Consensus 497 ~~~~ilG~e~~lWsE~~~~~~l~~~~~PR~~A~AE~~W~ 535 (587)
.+..+.|+..+.|++......+ ..++|-+++.||..|+
T Consensus 264 ~~~~~~G~~~T~W~d~g~~~~~-~~~~p~~~~~~~~~~~ 301 (301)
T cd06565 264 KKNGVQGILLTGWGDYGHEAVL-CELLPGLIPSLALALG 301 (301)
T ss_pred HHCCCCEEEEEecCCCCCcccH-HHHHHHHHHHHHHhcC
Confidence 5778999999999998765555 6799999999999884
No 12
>PF02838 Glyco_hydro_20b: Glycosyl hydrolase family 20, domain 2; InterPro: IPR015882 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside []. This entry represents the alpha and beta subunit of beta-N-acetylhexosaminidase. It contains a similar fold but lacks the catalytic centre.; GO: 0004563 beta-N-acetylhexosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 3SUT_A 3SUS_A 3GH7_A 3SUR_A 3SUW_A 3SUV_A 3SUU_A 3GH5_A 3GH4_A 2J4G_B ....
Probab=99.69 E-value=3.3e-16 Score=141.81 Aligned_cols=123 Identities=22% Similarity=0.193 Sum_probs=87.1
Q ss_pred CceeecCceEEEcCCcceEEcCCCeEEEcCCchhHHHHHHHHHHHHHhhCCCCccccccccccCCCCCCceeEEEEEecC
Q 044344 36 INVWPKPRIMSWTTQPRANLLSPSFAISSPKHFYLSSAANRYLKLIKNEHHQPLVTPSLINITTSSSSALHTLFITVESL 115 (587)
Q Consensus 36 ~~l~P~P~~~~~~~~~~~~~l~~~~~i~~~~~~~l~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~i~~~ 115 (587)
+.|||.|++++..+| .|.|+..++|++.. +....++.++.+.|....+..+... .. .....|.+...+
T Consensus 2 ~~iiP~P~~~~~~~g--~~~l~~~~~i~~~~-~~~~~~~~~l~~~l~~~~g~~~~~~-------~~-~~~~~i~~~~~~- 69 (124)
T PF02838_consen 2 PSIIPQPQSITLTGG--TFTLPQSTKIVVDD-PELKAAAERLQDILKRLTGISLSSS-------GS-PNKIDIRLLLDD- 69 (124)
T ss_dssp ---SS--SEEEEEEE--EEEETTTEEEEETT-CSHHHHHHHHHHHHHHHHTECCCEC-------SE-TTSEEEEEECTT-
T ss_pred CcEEccccEEEECCC--EEEECCCcEEEECC-cccHHHHHHHHHHHHHHhCCccccc-------CC-CCCceEEEeecC-
Confidence 579999999999887 89999999999864 4667888888888885544332211 11 123345443322
Q ss_pred CCCCCCCCCcceEEEeecCCCeEEEEecChhhhhHHHHHHHHhhcCCCCeeeeeceEEEcc
Q 044344 116 LTPLQHGVNETYTLSIPADASIANLTAHTVWGAMRGLETFSQLVWGKPNLLVASGLYVWDS 176 (587)
Q Consensus 116 ~~~l~~~~~E~Y~L~i~~~~~~i~I~a~~~~G~~~g~~Tl~Ql~~~~~~~~~p~~~~I~D~ 176 (587)
+ ....+|+|+|+|+ .++|+|+|.+..|+|||++||+||+.+.++..+| +++|+|+
T Consensus 70 ~---~~~~~E~Y~L~i~--~~~I~I~a~~~~G~~yg~qTL~Qll~~~~~~~lp-~~~I~D~ 124 (124)
T PF02838_consen 70 D---AGLGEEGYRLSIS--PKGITIEASDPAGLFYGLQTLRQLLRQSGNGTLP-CVEIEDY 124 (124)
T ss_dssp C---CTSTTT-EEEEEE--SSEEEEEESSHHHHHHHHHHHHHHSBTCS-CEEE-EEEEEE-
T ss_pred C---CCCCCcceEEEEE--CCEEEEEEcCchHHHHHHHHHHHHhhccCCCccc-eEEEEeC
Confidence 2 2346999999999 5789999999999999999999999976534899 8899996
No 13
>PF14845 Glycohydro_20b2: beta-acetyl hexosaminidase like; PDB: 1O7A_B 2GJX_C 2GK1_D 1NOW_B 1NOU_B 3LMY_B 1NP0_A 3S6T_A 3OZO_A 3NSN_A ....
Probab=99.52 E-value=7.2e-14 Score=127.54 Aligned_cols=118 Identities=41% Similarity=0.588 Sum_probs=74.9
Q ss_pred eeecCceEEEcCCcceEEcCC-CeEEEcC--C----chhHHHHHHHHHHHHHhhCCCCccccccccccCCCCCCceeEEE
Q 044344 38 VWPKPRIMSWTTQPRANLLSP-SFAISSP--K----HFYLSSAANRYLKLIKNEHHQPLVTPSLINITTSSSSALHTLFI 110 (587)
Q Consensus 38 l~P~P~~~~~~~~~~~~~l~~-~~~i~~~--~----~~~l~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 110 (587)
|||+|+.++++.. .+.++. ++.+... . ++.|.+|++||.+.|+.....+...................|.|
T Consensus 1 lWP~P~~~~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~l~~A~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~I 78 (128)
T PF14845_consen 1 LWPKPQSISLGST--VFSLDPSNFKFNFSGSSSNSCSDILQEAIDRYLKLIFKQNPSPCASHSRGSSFKPKSGYLSSLEI 78 (128)
T ss_dssp -SS--SEEEEECE--EEEEECCCEEEEEETTTSTTTHHHHHHHHHHHHHHHHT--TS-TT----S-----BE-ECEEEEE
T ss_pred CCCCCcEEEECCc--eEEEchhhEEEEeCCCCcccHHHHHHHHHHHHHHHHhhhcccccccCCcccccccCCCcceEEEE
Confidence 7999999999776 888888 6777632 2 37899999999999998654443321100000000023456888
Q ss_pred EEecCCCC--CCCCCCcceEEEe-ecCCCeEEEEecChhhhhHHHHHHHHh
Q 044344 111 TVESLLTP--LQHGVNETYTLSI-PADASIANLTAHTVWGAMRGLETFSQL 158 (587)
Q Consensus 111 ~i~~~~~~--l~~~~~E~Y~L~i-~~~~~~i~I~a~~~~G~~~g~~Tl~Ql 158 (587)
.+.+.+.. +..+.||+|+|.| +.+ +.|+|+|++.+|++|||+||.||
T Consensus 79 ~v~~~~~~~~l~~~~DESY~L~v~s~~-~~~~I~A~tv~GalrgLETlsQL 128 (128)
T PF14845_consen 79 TVTSDDEDSELQLGMDESYSLSVPSTN-GQATITANTVWGALRGLETLSQL 128 (128)
T ss_dssp EESSSSTTSS--TT----EEEEETSSS-EEEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEecCCccccCCCCCCCEEEEEecCC-ceEEEEECChhhhhHHHHHHhhC
Confidence 88765443 7778999999999 532 27999999999999999999997
No 14
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.47 E-value=0.0083 Score=63.16 Aligned_cols=196 Identities=15% Similarity=0.188 Sum_probs=117.3
Q ss_pred ccceeeeCCCCC--CCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCC-ccCCCCCccccCCCCCCCCCCCHHHHHHHHHH
Q 044344 180 AHRGLILDTSRN--YYGVDDILRTIKTMSFNKMNVFHWHITDSHSFP-LVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEF 256 (587)
Q Consensus 180 ~~RG~mlD~aR~--f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr-~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~y 256 (587)
+.||+=|++..+ +...+.+.++|+.|...++|++-++.-- .|-- +.++-.|....... .....-..+=++.+|+-
T Consensus 1 E~RgvWi~~~~~~~~~~~~~~~~~l~~l~~~~~N~V~~qVr~-~gda~Y~S~~~p~s~~~~g-~~~~~pg~DpL~~~I~e 78 (311)
T PF02638_consen 1 EFRGVWISTVANIDWPSKEQIDEMLDDLKSAGFNAVFVQVRP-RGDALYPSDIEPWSGYLTG-KQGKDPGFDPLEFMIEE 78 (311)
T ss_pred CeEEEEEeecCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEEe-CcEEEecccccccccccCC-CCCCCCCccHHHHHHHH
Confidence 368888887653 4467899999999999999998888753 2332 23333442211100 00111235679999999
Q ss_pred HHhcCCEEEecC--CCCCchh-hHHHhCchhhhhcccCcCCCCCccccccc-CCCCCCcCCCCChhHHHHHHHHHHHHHH
Q 044344 257 GLTHGVRVLPEI--DSPGHTG-SWAEAYPEIVTCANKFWWPAESNWTNRLA-SEPGTGHLNPLNPKTYKILKNVINDIVN 332 (587)
Q Consensus 257 A~~rgI~VIPEI--D~PGH~~-a~~~~~p~l~~c~~~~~~~~~~~~~~~~~-~~~~~~~L~~~~~~t~~fl~~v~~Ev~~ 332 (587)
|++|||+|.+=+ -+.++.. .+.+.+|+-..... .+|..... ......-|||.+|++.+|+.+++.|+++
T Consensus 79 aHkrGlevHAW~~~~~~~~~~~~~~~~~p~~~~~~~-------~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~ 151 (311)
T PF02638_consen 79 AHKRGLEVHAWFRVGFNAPDVSHILKKHPEWFAVNH-------PGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVK 151 (311)
T ss_pred HHHcCCEEEEEEEeecCCCchhhhhhcCchhheecC-------CCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHh
Confidence 999999999876 2333322 24455666432111 12221110 0011235999999999999999999999
Q ss_pred hCCCCeeeeccCCcCC--CCCCCC-HHHHHHHHcCC-----CH---------HHHHHHHHHHHHHHHHhcC
Q 044344 333 LFPEAFYHAGADEIIP--GCWKAD-STIQSFLSNGG-----TL---------SQLLEKFVGSTLPYIVFFN 386 (587)
Q Consensus 333 lF~~~~iHIGgDEv~~--~~w~~~-p~~~~~~~~~~-----~~---------~~l~~~f~~~~~~~l~~~g 386 (587)
-.+-.=||+ |-+.. ..++.+ +..+.|.+..| .. .+-...|++++.+.+++.+
T Consensus 152 ~YdvDGIhl--Ddy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~k 220 (311)
T PF02638_consen 152 NYDVDGIHL--DDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIK 220 (311)
T ss_pred cCCCCeEEe--cccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 887655663 33322 223322 34555655442 11 2344567788888887744
No 15
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=97.16 E-value=0.0056 Score=64.28 Aligned_cols=172 Identities=16% Similarity=0.198 Sum_probs=115.5
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecCCCCCch
Q 044344 195 VDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEIDSPGHT 274 (587)
Q Consensus 195 ~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~PGH~ 274 (587)
.+.+.++|+.+...++|.+.+-+.||.|.=.=-...|...+.|+.. .+ -.|+++|++.++++||.+|--|=++-=.
T Consensus 12 ~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~---~~-i~D~~~l~~~l~e~gIY~IARIv~FkD~ 87 (316)
T PF13200_consen 12 PERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVK---PY-IKDLKALVKKLKEHGIYPIARIVVFKDP 87 (316)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhccccc---cc-ccCHHHHHHHHHHCCCEEEEEEEEecCh
Confidence 4678999999999999999999999998632112345555566542 22 4799999999999999999888666522
Q ss_pred hhHHHhCchhhhhcccCcCCCCCcccccccCCCCCCcCCCCChhHHHHHHHHHHHHHHhCCCCeeeeccCCcCCCCCCCC
Q 044344 275 GSWAEAYPEIVTCANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNLFPEAFYHAGADEIIPGCWKAD 354 (587)
Q Consensus 275 ~a~~~~~p~l~~c~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~Ev~~lF~~~~iHIGgDEv~~~~w~~~ 354 (587)
. ....+|++.... .++..|..+. +..=+||.++++.+.+-+|-+|++++ |-||+... +-..
T Consensus 88 ~-la~~~pe~av~~-----~~G~~w~d~~----~~~WvnP~~~evw~Y~i~IA~Eaa~~--------GFdEIqfD-YIRF 148 (316)
T PF13200_consen 88 V-LAEAHPEWAVKT-----KDGSVWRDNE----GEAWVNPYSKEVWDYNIDIAKEAAKL--------GFDEIQFD-YIRF 148 (316)
T ss_pred H-HhhhChhhEEEC-----CCCCcccCCC----CCccCCCCCHHHHHHHHHHHHHHHHc--------CCCEEEee-eeec
Confidence 2 234588885411 3445565421 23459999999999999999999875 45555321 1111
Q ss_pred HH---HHHHHHcCC----CHHHHHHHHHHHHHHHHHhcCCeE
Q 044344 355 ST---IQSFLSNGG----TLSQLLEKFVGSTLPYIVFFNRTV 389 (587)
Q Consensus 355 p~---~~~~~~~~~----~~~~l~~~f~~~~~~~l~~~gk~~ 389 (587)
|. .+...-..+ +..+....|++.+.+.|+..|..+
T Consensus 149 P~~~~~~~l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~~v~v 190 (316)
T PF13200_consen 149 PDEGRLSGLDYSENDTEESRVDAITDFLAYAREELHPYGVPV 190 (316)
T ss_pred CCCCcccccccCCCCCcchHHHHHHHHHHHHHHHHhHcCCCE
Confidence 21 000000011 245778999999999999988654
No 16
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=96.80 E-value=0.027 Score=59.05 Aligned_cols=145 Identities=19% Similarity=0.279 Sum_probs=85.1
Q ss_pred ceeeeCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCH---HHHHHHHHHHH
Q 044344 182 RGLILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSP---DDVKKIVEFGL 258 (587)
Q Consensus 182 RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~---~ei~eiv~yA~ 258 (587)
||+.--.-...++.+.-+.+|+.|+.+|||++-.-..||. .+.. .|+ +.|+. +++++|++.|+
T Consensus 1 RGvIEGFYG~PWs~e~R~~l~~f~~~~kmN~YiYAPKdDp----------yhr~--~Wr--e~Yp~~el~~l~~L~~~a~ 66 (306)
T PF07555_consen 1 RGVIEGFYGRPWSHEDRLDLIRFLGRYKMNTYIYAPKDDP----------YHRS--KWR--EPYPEEELAELKELADAAK 66 (306)
T ss_dssp EEEEE-SSSS---HHHHHHHHHHHHHTT--EEEE--TT-T----------TTTT--TTT--S---HHHHHHHHHHHHHHH
T ss_pred CCceeCcCCCCCCHHHHHHHHHHHHHcCCceEEECCCCCh----------HHHh--hhc--ccCCHHHHHHHHHHHHHHH
Confidence 7777777777888999999999999999999998888873 2221 243 56766 45788999999
Q ss_pred hcCCEEEecCCCCCchhhHHHhCchhhhhcccCcCCCCCcccccccCCCCCCcCCCCChhHHHHHHHHHHHHHHhCCCCe
Q 044344 259 THGVRVLPEIDSPGHTGSWAEAYPEIVTCANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNLFPEAF 338 (587)
Q Consensus 259 ~rgI~VIPEID~PGH~~a~~~~~p~l~~c~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~Ev~~lF~~~~ 338 (587)
+.||++|=-| .||.. ++-+.++.++-|.+=++++.++ .-..
T Consensus 67 ~~~V~Fv~ai-sPg~~-------------------------------------~~~s~~~d~~~L~~K~~ql~~l-Gvr~ 107 (306)
T PF07555_consen 67 ANGVDFVYAI-SPGLD-------------------------------------ICYSSEEDFEALKAKFDQLYDL-GVRS 107 (306)
T ss_dssp HTT-EEEEEE-BGTTT---------------------------------------TSHHHHHHHHHHHHHHHHCT-T--E
T ss_pred HcCCEEEEEE-Ccccc-------------------------------------cccCcHHHHHHHHHHHHHHHhc-CCCE
Confidence 9999999665 22221 1223566777777667777665 3355
Q ss_pred eeeccCCcCCCCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q 044344 339 YHAGADEIIPGCWKADSTIQSFLSNGGTLSQLLEKFVGSTLPYIVFF 385 (587)
Q Consensus 339 iHIGgDEv~~~~w~~~p~~~~~~~~~~~~~~l~~~f~~~~~~~l~~~ 385 (587)
|=|=.|.+...-|..... ......+.+..++|++.+.+.+.
T Consensus 108 FailfDDi~~~~~~~~~~------~~~~~~~~q~~l~n~v~~~l~~~ 148 (306)
T PF07555_consen 108 FAILFDDIDGDLWHCDKD------DFNSLAQAQARLLNRVNKELIKK 148 (306)
T ss_dssp EEEE-TS-SSC--TTTTT------T-SCHHHHHHHHHHHHHHHTTTC
T ss_pred EEEeecCCCCcccccccc------ccchHHHHHHHHHHHHHHHHhcc
Confidence 666667766432221100 01256788899999998888763
No 17
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.19 E-value=0.21 Score=54.35 Aligned_cols=150 Identities=13% Similarity=0.137 Sum_probs=93.3
Q ss_pred CcccceeeeC--CCCCCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccC-CCCCCCCCCCHHHHHHHH
Q 044344 178 LFAHRGLILD--TSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAK-GSYGHDMQYSPDDVKKIV 254 (587)
Q Consensus 178 ~f~~RG~mlD--~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~-ga~~~~~~YT~~ei~eiv 254 (587)
.=+.||+=|| .++..+.-..+++.+|.+....+|++-.-...+-.=-+.+...|..... |..+... -.+=+..+|
T Consensus 44 ~~eiRGvWltn~~~~v~~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~--g~DpLa~~I 121 (418)
T COG1649 44 PQEIRGVWLTNADSRVLFQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDP--GYDPLAFVI 121 (418)
T ss_pred cccceeEEEecCCCcccccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCC--CCChHHHHH
Confidence 3578999998 5577888899999999999999999887775432111222223322110 0000011 125689999
Q ss_pred HHHHhcCCEEEecCCCCCchhh---HHHhCchhhhhcccCcCCCCCcccccccCCC-CCCcCCCCChhHHHHHHHHHHHH
Q 044344 255 EFGLTHGVRVLPEIDSPGHTGS---WAEAYPEIVTCANKFWWPAESNWTNRLASEP-GTGHLNPLNPKTYKILKNVINDI 330 (587)
Q Consensus 255 ~yA~~rgI~VIPEID~PGH~~a---~~~~~p~l~~c~~~~~~~~~~~~~~~~~~~~-~~~~L~~~~~~t~~fl~~v~~Ev 330 (587)
+-|++|||+|+|=++.-.-+-. ..+.+|+-... ...+|-....... ...-|||..|++-+|+.+++-|+
T Consensus 122 ~~AHkr~l~v~aWf~~~~~a~~~s~~~~~~p~~~~~-------~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~ev 194 (418)
T COG1649 122 AEAHKRGLEVHAWFNPYRMAPPTSPLTKRHPHWLTT-------KRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEV 194 (418)
T ss_pred HHHHhcCCeeeechhhcccCCCCChhHhhCCCCccc-------CCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHH
Confidence 9999999999997764432211 22334443211 0112222111100 23469999999999999999999
Q ss_pred HHhCCC
Q 044344 331 VNLFPE 336 (587)
Q Consensus 331 ~~lF~~ 336 (587)
..-++.
T Consensus 195 V~~Ydv 200 (418)
T COG1649 195 VRNYDV 200 (418)
T ss_pred HhCCCC
Confidence 987764
No 18
>PF03648 Glyco_hydro_67N: Glycosyl hydrolase family 67 N-terminus; InterPro: IPR005154 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This represents a family of alpha-glucuronidases (GH67 from CAZY). Deletion mutants have indicated that the central region is responsible for the catalytic activity. Within this central domain, the invariant Glu and Asp (residues 391 and 364 respectively from Bacillus stearothermophilus (Geobacillus stearothermophilus)) are thought to from the the catalytic centre [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process; PDB: 1GQL_A 1GQI_B 1GQJ_B 1GQK_A 1H41_A 1MQR_A 1K9F_A 1K9E_A 1L8N_A 1K9D_A ....
Probab=95.77 E-value=0.062 Score=48.60 Aligned_cols=88 Identities=13% Similarity=0.083 Sum_probs=52.3
Q ss_pred EEEcC-CchhHHHHHHHHHHHHHhhCCCCccccccccccCCCCCCceeEEEEEecCCCC---------CCCCCCcceEEE
Q 044344 61 AISSP-KHFYLSSAANRYLKLIKNEHHQPLVTPSLINITTSSSSALHTLFITVESLLTP---------LQHGVNETYTLS 130 (587)
Q Consensus 61 ~i~~~-~~~~l~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~i~~~~~~---------l~~~~~E~Y~L~ 130 (587)
.|++. +++.+..|++.+++.|....+...... ... .....|.|...+.... +...++|||.|+
T Consensus 23 ~I~~~~~~~~~~~A~~EL~~~l~~i~G~~~~~~------~~~-~~~~~iviGt~~~~~~~~~~~~~~~~~~l~~EGy~I~ 95 (122)
T PF03648_consen 23 NIVVLGNSPVVQTAAEELQRGLKGILGKEPPVS------SEP-PESSAIVIGTLDDSPLIDELILDDELAQLGEEGYIIR 95 (122)
T ss_dssp EEEE---SHHHHHHHHHHHHHHHHHHTS--EEE------SSS--TTSEEEEEEGGG-SSHHHT--HHHHTTTSTT-EEEE
T ss_pred EEEEcCCChHHHHHHHHHHHHHHHHhCCCCccc------cCC-CCCceEEEEECccchhhhhhccchhhhccCCccEEEE
Confidence 44443 357788899999998887655443211 111 1123466655432211 112479999999
Q ss_pred ee--cCCCeEEEEecChhhhhHHHHHH
Q 044344 131 IP--ADASIANLTAHTVWGAMRGLETF 155 (587)
Q Consensus 131 i~--~~~~~i~I~a~~~~G~~~g~~Tl 155 (587)
.. .+++.+.|.|++..|++||+=.|
T Consensus 96 ~v~~~~~~~lvI~g~~~~G~LYGvF~l 122 (122)
T PF03648_consen 96 TVEIGGKNVLVIAGKTERGVLYGVFHL 122 (122)
T ss_dssp EEESSSSEEEEEEESSHHHHHHHHHHH
T ss_pred EEecCCCCEEEEEeCCCcEEEEEEeeC
Confidence 92 12578999999999999998543
No 19
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=95.41 E-value=0.061 Score=55.40 Aligned_cols=115 Identities=9% Similarity=0.099 Sum_probs=67.6
Q ss_pred CCCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecCC
Q 044344 190 RNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEID 269 (587)
Q Consensus 190 R~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID 269 (587)
++-...+..|++||..|.+++-.+.+ |.||.-.- . ...+.....+...+|+|||+||+++||.|+-=..
T Consensus 26 ~~g~~t~~~k~yIDfAa~~G~eYvlv----D~GW~~~~--~-----~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~ 94 (273)
T PF10566_consen 26 KHGATTETQKRYIDFAAEMGIEYVLV----DAGWYGWE--K-----DDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYH 94 (273)
T ss_dssp -BSSSHHHHHHHHHHHHHTT-SEEEE----BTTCCGS---------TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHcCCCEEEe----cccccccc--c-----cccccccccCCccCHHHHHHHHHHcCCCEEEEEe
Confidence 34467899999999999999998877 78996310 0 0011112356779999999999999988875433
Q ss_pred CCC---------chhhHHHhCchhhhhcccCcCCCCCcccccccCCCCCCcCCCCChhHHHHHHHHHHHHHHh
Q 044344 270 SPG---------HTGSWAEAYPEIVTCANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNL 333 (587)
Q Consensus 270 ~PG---------H~~a~~~~~p~l~~c~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~Ev~~l 333 (587)
.-+ +...+++.|.+ |+... + ..+-++-.+.++.++.++|+++.++.
T Consensus 95 ~~~~~~~~~~~~~~~~~f~~~~~---------------~Gv~G-v--KidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 95 SETGGNVANLEKQLDEAFKLYAK---------------WGVKG-V--KIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp CCHTTBHHHHHCCHHHHHHHHHH---------------CTEEE-E--EEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred CCcchhhHhHHHHHHHHHHHHHH---------------cCCCE-E--eeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 222 11112222222 22210 0 11235667899999999999999874
No 20
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=95.38 E-value=0.16 Score=46.70 Aligned_cols=122 Identities=16% Similarity=0.105 Sum_probs=80.4
Q ss_pred HHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecCCCCCchhhHH
Q 044344 199 LRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEIDSPGHTGSWA 278 (587)
Q Consensus 199 k~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~PGH~~a~~ 278 (587)
+++++.|...+.|.+.+...+-.||-+ ||-= .|. ....++++=++|+|+-|+++||+|+--+|.--+.. +.
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ay----YPt~--~~~--~hp~L~~Dllge~v~a~h~~Girv~ay~~~~~d~~-~~ 73 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAY----YPTK--VGP--RHPGLKRDLLGEQVEACHERGIRVPAYFDFSWDED-AA 73 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEE----ccCC--CCc--CCCCCCcCHHHHHHHHHHHCCCEEEEEEeeecChH-HH
Confidence 678999999999999998776667654 4421 121 12345656679999999999999999998874443 45
Q ss_pred HhCchhhhhcccCcCCCCCcccccccCCCCCCcCCCCChhHHHHHHHHHHHHHHhCC
Q 044344 279 EAYPEIVTCANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNLFP 335 (587)
Q Consensus 279 ~~~p~l~~c~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~Ev~~lF~ 335 (587)
+.|||-..-. ++++.........+....+|+.. .-.+++...++|+++.++
T Consensus 74 ~~HPeW~~~~-----~~G~~~~~~~~~~~~~~~~c~ns-~Y~e~~~~~i~Ei~~~y~ 124 (132)
T PF14871_consen 74 ERHPEWFVRD-----ADGRPMRGERFGYPGWYTCCLNS-PYREFLLEQIREILDRYD 124 (132)
T ss_pred HhCCceeeEC-----CCCCCcCCCCcCCCCceecCCCc-cHHHHHHHHHHHHHHcCC
Confidence 5799984321 12211000000112223466654 566999999999999886
No 21
>smart00642 Aamy Alpha-amylase domain.
Probab=93.66 E-value=0.38 Score=45.94 Aligned_cols=76 Identities=11% Similarity=0.190 Sum_probs=54.3
Q ss_pred CChHHHHHHHHHHHhCCCcEEEEEeeCC------CCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 193 YGVDDILRTIKTMSFNKMNVFHWHITDS------HSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 193 ~~~~~lk~~Id~ma~~KlN~lh~HltDd------q~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
=..+.|.+-++.++..++|.+++-.--. ..+.|....|-.+.+. + =|.+|++++|+-|+++||+||-
T Consensus 16 G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~--~-----Gt~~d~~~lv~~~h~~Gi~vil 88 (166)
T smart00642 16 GDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPR--F-----GTMEDFKELVDAAHARGIKVIL 88 (166)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcc--c-----CCHHHHHHHHHHHHHCCCEEEE
Confidence 3467788888899999999999865311 1233333333222211 1 1789999999999999999999
Q ss_pred cCCCCCchhh
Q 044344 267 EIDSPGHTGS 276 (587)
Q Consensus 267 EID~PGH~~a 276 (587)
.+ +|.|+..
T Consensus 89 D~-V~NH~~~ 97 (166)
T smart00642 89 DV-VINHTSD 97 (166)
T ss_pred EE-CCCCCCC
Confidence 99 8888865
No 22
>PRK12313 glycogen branching enzyme; Provisional
Probab=93.43 E-value=0.83 Score=52.87 Aligned_cols=126 Identities=10% Similarity=0.054 Sum_probs=78.0
Q ss_pred CCChHH-HHHHHHHHHhCCCcEEEEEeeC----CCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 192 YYGVDD-ILRTIKTMSFNKMNVFHWHITD----SHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 192 f~~~~~-lk~~Id~ma~~KlN~lh~HltD----dq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
+-+... +.++||.+..+++|.+++=..= +.+|.|....|=.+. . .+=|.+|+|+||+-|.++||.||-
T Consensus 166 ~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~--~-----~~Gt~~d~k~lv~~~H~~Gi~Vil 238 (633)
T PRK12313 166 PLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPT--S-----RYGTPEDFMYLVDALHQNGIGVIL 238 (633)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCC--C-----CCCCHHHHHHHHHHHHHCCCEEEE
Confidence 445544 4466799999999999976531 124555544432221 1 122899999999999999999999
Q ss_pred cCCCCCchhhHHHhCchhhhhcccCcCCCC-----CcccccccCCCCCCcCCCCChhHHHHHHHHHHHHHHhC
Q 044344 267 EIDSPGHTGSWAEAYPEIVTCANKFWWPAE-----SNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNLF 334 (587)
Q Consensus 267 EID~PGH~~a~~~~~p~l~~c~~~~~~~~~-----~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~Ev~~lF 334 (587)
.+ ++.|+..-....+.+. ....+..+++ ..|+ ...||-.+|++.+++.+++.-.++-|
T Consensus 239 D~-V~nH~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~w~--------~~~~n~~~~~vr~~l~~~~~~W~~~~ 301 (633)
T PRK12313 239 DW-VPGHFPKDDDGLAYFD-GTPLYEYQDPRRAENPDWG--------ALNFDLGKNEVRSFLISSALFWLDEY 301 (633)
T ss_pred EE-CCCCCCCCcccccccC-CCcceeecCCCCCcCCCCC--------CcccCCCCHHHHHHHHHHHHHHHHHh
Confidence 98 7899853211111110 0000000110 0121 12588899999999999998888764
No 23
>PRK14706 glycogen branching enzyme; Provisional
Probab=93.33 E-value=2.7 Score=48.67 Aligned_cols=126 Identities=12% Similarity=0.095 Sum_probs=76.9
Q ss_pred CCCh-HHHHHHHHHHHhCCCcEEEEEeeCC----CCCCccCCCCCccccCCCCCCCCCC-CHHHHHHHHHHHHhcCCEEE
Q 044344 192 YYGV-DDILRTIKTMSFNKMNVFHWHITDS----HSFPLVLPSEPDLAAKGSYGHDMQY-SPDDVKKIVEFGLTHGVRVL 265 (587)
Q Consensus 192 f~~~-~~lk~~Id~ma~~KlN~lh~HltDd----q~fr~e~~~~P~Lt~~ga~~~~~~Y-T~~ei~eiv~yA~~rgI~VI 265 (587)
|.+. +.+.++|+.+...++|.+++-..-. .+|.+....|=. .+..| |.+|+|++|+-|.++||.||
T Consensus 163 ~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~--------~~~~~g~~~~~~~lv~~~H~~gi~Vi 234 (639)
T PRK14706 163 FLNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYA--------PTSRLGTPEDFKYLVNHLHGLGIGVI 234 (639)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccc--------cccccCCHHHHHHHHHHHHHCCCEEE
Confidence 4554 4455667899999999988755421 234444333311 12222 89999999999999999999
Q ss_pred ecCCCCCchhhHHHhCchhhhhcccCcCCCC-----CcccccccCCCCCCcCCCCChhHHHHHHHHHHHHHHhCC
Q 044344 266 PEIDSPGHTGSWAEAYPEIVTCANKFWWPAE-----SNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNLFP 335 (587)
Q Consensus 266 PEID~PGH~~a~~~~~p~l~~c~~~~~~~~~-----~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~Ev~~lF~ 335 (587)
.++ ++.|+..-......+-.. ..+...+. .+|+ ...+|..+|++.+|+.+.+.-.++-|.
T Consensus 235 lD~-v~nH~~~~~~~l~~~dg~-~~y~~~~~~~g~~~~w~--------~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 235 LDW-VPGHFPTDESGLAHFDGG-PLYEYADPRKGYHYDWN--------TYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred EEe-cccccCcchhhhhccCCC-cceeccCCcCCcCCCCC--------CcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 998 889985421110001000 00000100 1232 124788999999999999988886553
No 24
>PLN02960 alpha-amylase
Probab=93.28 E-value=0.71 Score=54.54 Aligned_cols=127 Identities=13% Similarity=0.151 Sum_probs=79.7
Q ss_pred CCChHHHH-HHHHHHHhCCCcEEEEEee----CCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 192 YYGVDDIL-RTIKTMSFNKMNVFHWHIT----DSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 192 f~~~~~lk-~~Id~ma~~KlN~lh~Hlt----Ddq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
+-+...+. +.|+.+..+++|.+++-.. +..+|.|....|=... +.| =|.+|++++|+-|.++||.||-
T Consensus 412 ~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~--~~y-----Gtp~dfk~LVd~aH~~GI~VIL 484 (897)
T PLN02960 412 ISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVS--SRF-----GTPDDFKRLVDEAHGLGLLVFL 484 (897)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcc--ccc-----CCHHHHHHHHHHHHHCCCEEEE
Confidence 34555554 6799999999999998765 2334555544432221 122 2789999999999999999999
Q ss_pred cCCCCCchhhHH-HhCchhhhhcccCcCCC----CCcccccccCCCCCCcCCCCChhHHHHHHHHHHHHHHhC
Q 044344 267 EIDSPGHTGSWA-EAYPEIVTCANKFWWPA----ESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNLF 334 (587)
Q Consensus 267 EID~PGH~~a~~-~~~p~l~~c~~~~~~~~----~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~Ev~~lF 334 (587)
.+ +|.|+..-. .....+....+.+...+ ...|+ +..+|..++++.+|+-+.+.-.++-|
T Consensus 485 Dv-V~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG--------~~~fNy~~~eVr~fLlsna~yWl~Ey 548 (897)
T PLN02960 485 DI-VHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWG--------TRMFKYGDHEVLHFLLSNLNWWVTEY 548 (897)
T ss_pred Ee-cccccCCccccchhhcCCCccceeecCCCCccCCCC--------CcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 98 889986421 11111110000111000 01232 23578999999999999988887654
No 25
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=93.22 E-value=3.3 Score=48.67 Aligned_cols=182 Identities=10% Similarity=0.115 Sum_probs=103.1
Q ss_pred CChHH-HHHHHHHHHhCCCcEEEEEeeCC----CCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEec
Q 044344 193 YGVDD-ILRTIKTMSFNKMNVFHWHITDS----HSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPE 267 (587)
Q Consensus 193 ~~~~~-lk~~Id~ma~~KlN~lh~HltDd----q~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPE 267 (587)
-+... ..+.|+.+..+++|.+++-..-+ .+|-|....|=.+.+ .+=|.+|+|+||+-|.++||.||-.
T Consensus 247 gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~-------~~Gtp~dlk~LVd~aH~~GI~VilD 319 (758)
T PLN02447 247 NSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSS-------RSGTPEDLKYLIDKAHSLGLRVLMD 319 (758)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccc-------ccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 34444 46789999999999999865422 345555444433321 1127899999999999999999999
Q ss_pred CCCCCchhhHH-HhCchhhhhcccCcCCCCCcccccccCCCCCCcCCCCChhHHHHHHHHHHHHHHhCC-----------
Q 044344 268 IDSPGHTGSWA-EAYPEIVTCANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNLFP----------- 335 (587)
Q Consensus 268 ID~PGH~~a~~-~~~p~l~~c~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~Ev~~lF~----------- 335 (587)
+ ++.|+..-. .....+-.....++..+...+. ..-....+|-.++++.+||.+.+.-.++-|.
T Consensus 320 v-V~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~----~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~s 394 (758)
T PLN02447 320 V-VHSHASKNTLDGLNGFDGTDGSYFHSGPRGYH----WLWDSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTS 394 (758)
T ss_pred e-ccccccccccccccccCCCCccccccCCCCCc----CcCCCceecCCCHHHHHHHHHHHHHHHHHhCcccccccchhh
Confidence 8 899986421 1111110000011101100000 0001235888999999999999998887542
Q ss_pred CCeeeeccCCcCCCCCCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhcCCeEEEEcccc
Q 044344 336 EAFYHAGADEIIPGCWKADSTIQSFLSNGG--TLSQLLEKFVGSTLPYIVFFNRTVVYWEDVL 396 (587)
Q Consensus 336 ~~~iHIGgDEv~~~~w~~~p~~~~~~~~~~--~~~~l~~~f~~~~~~~l~~~gk~~~~W~d~~ 396 (587)
--|.|-|-..-+...+.+ + -++ +.+. ..|+..+.+.+++.....+.=.|-.
T Consensus 395 mlY~~hg~~~~f~~~~~~------~--~g~~~d~~a--~~fL~~~N~~i~~~~p~~~~IAEd~ 447 (758)
T PLN02447 395 MLYHHHGLQMAFTGNYNE------Y--FGMATDVDA--VVYLMLANDLLHGLYPEAVTIAEDV 447 (758)
T ss_pred hhccccCcccccccCccc------c--cCCccChHH--HHHHHHHHHHHHHhCCCeEEEEEcC
Confidence 125565544322222211 0 011 2222 4688888888888665555544433
No 26
>PRK14705 glycogen branching enzyme; Provisional
Probab=93.03 E-value=0.79 Score=56.39 Aligned_cols=122 Identities=13% Similarity=0.102 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhCCCcEEEEEeeC----CCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecCCCCC
Q 044344 197 DILRTIKTMSFNKMNVFHWHITD----SHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEIDSPG 272 (587)
Q Consensus 197 ~lk~~Id~ma~~KlN~lh~HltD----dq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~PG 272 (587)
...++||.+..+++|.+++-..- +.+|-|+...|=..+ +.|+ |.+|+|++|+.|.++||.||-.+ +|+
T Consensus 767 l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~--~ryG-----t~~dfk~lVd~~H~~GI~VILD~-V~n 838 (1224)
T PRK14705 767 LAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPT--SRFG-----HPDEFRFLVDSLHQAGIGVLLDW-VPA 838 (1224)
T ss_pred HHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcC--cccC-----CHHHHHHHHHHHHHCCCEEEEEe-ccc
Confidence 34567899999999999886642 234666655543332 1222 89999999999999999999988 899
Q ss_pred chhhHHHhCchhhhhcccCcCCCC-----CcccccccCCCCCCcCCCCChhHHHHHHHHHHHHHHhCC
Q 044344 273 HTGSWAEAYPEIVTCANKFWWPAE-----SNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNLFP 335 (587)
Q Consensus 273 H~~a~~~~~p~l~~c~~~~~~~~~-----~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~Ev~~lF~ 335 (587)
|...-......+... ..+..++. .+|+ ...+|..++++.+|+-+.+.-.++-|.
T Consensus 839 H~~~d~~~l~~fdg~-~~y~~~d~~~g~~~~Wg--------~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 839 HFPKDSWALAQFDGQ-PLYEHADPALGEHPDWG--------TLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred cCCcchhhhhhcCCC-cccccCCcccCCCCCCC--------CceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 984321111111000 00000111 1232 234788999999999999888887653
No 27
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=92.82 E-value=0.94 Score=52.25 Aligned_cols=170 Identities=15% Similarity=0.135 Sum_probs=95.6
Q ss_pred HHHHHHHHHhCCCcEEEEEee-C---CCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecCCCCCc
Q 044344 198 ILRTIKTMSFNKMNVFHWHIT-D---SHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEIDSPGH 273 (587)
Q Consensus 198 lk~~Id~ma~~KlN~lh~Hlt-D---dq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~PGH 273 (587)
+.++||.+..+++|.+++=.. + +.+|.|....|=.+. ..|+ |.+|+|+||+-|.++||.||-.+ ++.|
T Consensus 159 ~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~--~~~G-----t~~dlk~lV~~~H~~Gi~VilD~-V~NH 230 (613)
T TIGR01515 159 ADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPT--SRFG-----TPDDFMYFVDACHQAGIGVILDW-VPGH 230 (613)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccc--cccC-----CHHHHHHHHHHHHHCCCEEEEEe-cccC
Confidence 445579999999999998432 1 123555544432221 1222 78999999999999999999988 7899
Q ss_pred hhhHHHhCchhhhhcccCcCCC-----CCcccccccCCCCCCcCCCCChhHHHHHHHHHHHHHHhCCC-----------C
Q 044344 274 TGSWAEAYPEIVTCANKFWWPA-----ESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNLFPE-----------A 337 (587)
Q Consensus 274 ~~a~~~~~p~l~~c~~~~~~~~-----~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~Ev~~lF~~-----------~ 337 (587)
+..-......+... ..+...+ ...|+ ...+|..+|++.+|+.++++-.++-|.- -
T Consensus 231 ~~~~~~~~~~~~~~-~~y~~~~~~~~~~~~w~--------~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~ 301 (613)
T TIGR01515 231 FPKDDHGLAEFDGT-PLYEHKDPRDGEHWDWG--------TLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASML 301 (613)
T ss_pred cCCccchhhccCCC-cceeccCCccCcCCCCC--------CceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhh
Confidence 86311111111000 0000000 01121 1247889999999999999998876531 1
Q ss_pred eeeeccCCcCCCCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCeEEEEcc
Q 044344 338 FYHAGADEIIPGCWKADSTIQSFLSNGGTLSQLLEKFVGSTLPYIVFFNRTVVYWED 394 (587)
Q Consensus 338 ~iHIGgDEv~~~~w~~~p~~~~~~~~~~~~~~l~~~f~~~~~~~l~~~gk~~~~W~d 394 (587)
|.|-|.++- .|..+. .+++...--..|++.+.+.+++.....++=.|
T Consensus 302 ~~~~~~~~~---~~~~~~-------~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE 348 (613)
T TIGR01515 302 YLDYSRDEG---EWSPNE-------DGGRENLEAVDFLRKLNQTVYEAFPGVVTIAE 348 (613)
T ss_pred hhccccccc---cccccc-------cCCcCChHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 233333321 121110 00101111246888888888876655555444
No 28
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=92.55 E-value=1.1 Score=50.99 Aligned_cols=119 Identities=13% Similarity=0.179 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeeCC----CCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecCCC
Q 044344 195 VDDILRTIKTMSFNKMNVFHWHITDS----HSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEIDS 270 (587)
Q Consensus 195 ~~~lk~~Id~ma~~KlN~lh~HltDd----q~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~ 270 (587)
..-|.+-||.++.+++|.+++-..-+ .+|.|....|=.+. ..| =|.+|+|+||+-|.++||+||-.+ +
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~--~~~-----G~~~e~k~lV~~aH~~Gi~VilD~-V 181 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPH--NAY-----GGPDDLKALVDAAHGLGLGVILDV-V 181 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccc--ccc-----CCHHHHHHHHHHHHHCCCEEEEEE-c
Confidence 45566668999999999999876421 23444433321111 112 278999999999999999999988 7
Q ss_pred CCchhhHHHhCchhhhhcccCcC-CCCCcccccccCCCCCCcCCCCCh---hHHHHHHHHHHHHHHhC
Q 044344 271 PGHTGSWAEAYPEIVTCANKFWW-PAESNWTNRLASEPGTGHLNPLNP---KTYKILKNVINDIVNLF 334 (587)
Q Consensus 271 PGH~~a~~~~~p~l~~c~~~~~~-~~~~~~~~~~~~~~~~~~L~~~~~---~t~~fl~~v~~Ev~~lF 334 (587)
+.|+..-....+.. + . ++. ...+.|+ ..+|-.+| ++.+++.+.+.-.++-|
T Consensus 182 ~NH~~~~~~~~~~~--~-~-y~~~~~~~~wg---------~~~n~~~~~~~~vr~~i~~~~~~W~~e~ 236 (542)
T TIGR02402 182 YNHFGPEGNYLPRY--A-P-YFTDRYSTPWG---------AAINFDGPGSDEVRRYILDNALYWLREY 236 (542)
T ss_pred cCCCCCcccccccc--C-c-cccCCCCCCCC---------CccccCCCcHHHHHHHHHHHHHHHHHHh
Confidence 78985321111111 0 0 110 0112333 24677777 88888888777776543
No 29
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=92.33 E-value=0.58 Score=50.45 Aligned_cols=139 Identities=15% Similarity=0.222 Sum_probs=81.5
Q ss_pred CChHHHHHHHHHHHhCCCcEEEEEeeCCCCCC-ccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecCCCC
Q 044344 193 YGVDDILRTIKTMSFNKMNVFHWHITDSHSFP-LVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEIDSP 271 (587)
Q Consensus 193 ~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr-~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~P 271 (587)
.|.+.+++-|+.|...++|++.++.. +|. +| | ..+.|.=+.+.++++.|+++||.||--+-+.
T Consensus 7 ~~~e~~~~d~~~m~~~G~n~vri~~~---~W~~lE----P---------~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~ 70 (374)
T PF02449_consen 7 WPEEEWEEDLRLMKEAGFNTVRIGEF---SWSWLE----P---------EEGQYDFSWLDRVLDLAAKHGIKVILGTPTA 70 (374)
T ss_dssp S-CCHHHHHHHHHHHHT-SEEEE-CC---EHHHH-----S---------BTTB---HHHHHHHHHHHCTT-EEEEEECTT
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEEe---chhhcc----C---------CCCeeecHHHHHHHHHHHhccCeEEEEeccc
Confidence 45689999999999999999997642 232 11 1 1245677889999999999999999655432
Q ss_pred CchhhHHHhCchhhhhcccCcCCCCCcccccccCCCCCCcCCCCChhHHHHHHHHHHHHHHhCCC-C---eeeeccCCcC
Q 044344 272 GHTGSWAEAYPEIVTCANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNLFPE-A---FYHAGADEII 347 (587)
Q Consensus 272 GH~~a~~~~~p~l~~c~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~Ev~~lF~~-~---~iHIGgDEv~ 347 (587)
..=.-+.+.||+...-.. ++. .. ........|+.+|...+.+..+++++.+-+.+ + -+||+ -|..
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~-----~g~----~~-~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~-NE~~ 139 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDA-----DGR----RR-GFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQID-NEPG 139 (374)
T ss_dssp TS-HHHHCCSGCCC-B-T-----TTS----BE-ECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEC-CSTT
T ss_pred ccccchhhhcccccccCC-----CCC----cC-ccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEec-cccC
Confidence 222223457888742110 110 00 01112357899999999999999999988764 2 45663 3443
Q ss_pred CCCCCCCHHHHH
Q 044344 348 PGCWKADSTIQS 359 (587)
Q Consensus 348 ~~~w~~~p~~~~ 359 (587)
.. -.-|+.|++
T Consensus 140 ~~-~~~~~~~~~ 150 (374)
T PF02449_consen 140 YH-RCYSPACQA 150 (374)
T ss_dssp CT-S--SHHHHH
T ss_pred cC-cCCChHHHH
Confidence 31 233555543
No 30
>PRK12568 glycogen branching enzyme; Provisional
Probab=92.29 E-value=1.3 Score=51.75 Aligned_cols=127 Identities=13% Similarity=0.056 Sum_probs=78.2
Q ss_pred CCChHHH-HHHHHHHHhCCCcEEEEEeeCC----CCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 192 YYGVDDI-LRTIKTMSFNKMNVFHWHITDS----HSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 192 f~~~~~l-k~~Id~ma~~KlN~lh~HltDd----q~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
+.+...+ .++|+.+..+++|.+++-..-. .+|.|....|=..+. .+=|.+|+|++|+.|.++||.||-
T Consensus 265 ~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~-------~~G~~~dfk~lV~~~H~~Gi~VIl 337 (730)
T PRK12568 265 PLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA-------RHGSPDGFAQFVDACHRAGIGVIL 337 (730)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCc-------ccCCHHHHHHHHHHHHHCCCEEEE
Confidence 4444444 4568999999999998866421 235554433322211 122789999999999999999999
Q ss_pred cCCCCCchhhHHHhCchhhhhcccCcCCC-----CCcccccccCCCCCCcCCCCChhHHHHHHHHHHHHHHhCC
Q 044344 267 EIDSPGHTGSWAEAYPEIVTCANKFWWPA-----ESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNLFP 335 (587)
Q Consensus 267 EID~PGH~~a~~~~~p~l~~c~~~~~~~~-----~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~Ev~~lF~ 335 (587)
.+ +|.|+.........+-.. ..+..++ ..+|+ ...+|-.+|++.+|+-+.+.-.++-|.
T Consensus 338 D~-V~nH~~~d~~~l~~fdg~-~~Ye~~d~~~g~~~~W~--------~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 338 DW-VSAHFPDDAHGLAQFDGA-ALYEHADPREGMHRDWN--------TLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred Ee-ccccCCccccccccCCCc-cccccCCCcCCccCCCC--------CeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 99 799986532111111000 0000000 01232 124789999999999998888887653
No 31
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=92.02 E-value=0.25 Score=50.51 Aligned_cols=132 Identities=16% Similarity=0.204 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEee---CCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecCCCC
Q 044344 195 VDDILRTIKTMSFNKMNVFHWHIT---DSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEIDSP 271 (587)
Q Consensus 195 ~~~lk~~Id~ma~~KlN~lh~Hlt---Ddq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~P 271 (587)
..-|++-||.++..++|.+++-.. ....|.|....|=.+.. .+=|.+|+++||+-|++|||+||-.+ ++
T Consensus 3 ~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~-------~~Gt~~d~~~Lv~~~h~~gi~VilD~-V~ 74 (316)
T PF00128_consen 3 FRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDP-------RFGTMEDFKELVDAAHKRGIKVILDV-VP 74 (316)
T ss_dssp HHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEEST-------TTBHHHHHHHHHHHHHHTTCEEEEEE-ET
T ss_pred HHHHHHhhHHHHHcCCCceecccccccccccccccceeeecccc-------ccchhhhhhhhhhccccccceEEEee-ec
Confidence 355777789999999999987532 11233333333211111 11189999999999999999999888 77
Q ss_pred Cchhh---HH-H--h-----Cchhhhhccc--C---cC---CCCCcccccc-----cCCCCCCcCCCCChhHHHHHHHHH
Q 044344 272 GHTGS---WA-E--A-----YPEIVTCANK--F---WW---PAESNWTNRL-----ASEPGTGHLNPLNPKTYKILKNVI 327 (587)
Q Consensus 272 GH~~a---~~-~--~-----~p~l~~c~~~--~---~~---~~~~~~~~~~-----~~~~~~~~L~~~~~~t~~fl~~v~ 327 (587)
.|+.. |. . . +++....... . .+ .....|.... ...+....||..+|++.+++.+++
T Consensus 75 NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~ 154 (316)
T PF00128_consen 75 NHTSDDHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVL 154 (316)
T ss_dssp SEEETTSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccc
Confidence 79854 21 1 0 1111100000 0 00 0011121100 011122358899999999999999
Q ss_pred HHHHHhC
Q 044344 328 NDIVNLF 334 (587)
Q Consensus 328 ~Ev~~lF 334 (587)
+..++.+
T Consensus 155 ~~w~~~g 161 (316)
T PF00128_consen 155 KFWIEEG 161 (316)
T ss_dssp HHHHHTT
T ss_pred cchhhce
Confidence 9988755
No 32
>PRK05402 glycogen branching enzyme; Provisional
Probab=91.36 E-value=1.7 Score=51.25 Aligned_cols=123 Identities=12% Similarity=0.079 Sum_probs=77.2
Q ss_pred CCChHHHH-HHHHHHHhCCCcEEEEEeeC----CCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 192 YYGVDDIL-RTIKTMSFNKMNVFHWHITD----SHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 192 f~~~~~lk-~~Id~ma~~KlN~lh~HltD----dq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
+.+...|. ++||.+..+++|.+++-..- +..|.|....|=.+. . .+=|.+|+|+||+-|.++||.||-
T Consensus 261 ~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~--~-----~~Gt~~dfk~lV~~~H~~Gi~Vil 333 (726)
T PRK05402 261 FLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPT--S-----RFGTPDDFRYFVDACHQAGIGVIL 333 (726)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcC--c-----ccCCHHHHHHHHHHHHHCCCEEEE
Confidence 34454444 55799999999999986541 224555544442222 1 233899999999999999999999
Q ss_pred cCCCCCchhhH---HHhCchhhhhcccCcCCC-----CCcccccccCCCCCCcCCCCChhHHHHHHHHHHHHHHhC
Q 044344 267 EIDSPGHTGSW---AEAYPEIVTCANKFWWPA-----ESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNLF 334 (587)
Q Consensus 267 EID~PGH~~a~---~~~~p~l~~c~~~~~~~~-----~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~Ev~~lF 334 (587)
.+ +|.|+..- +..+..- ..+..++ -.+|+ ...+|..+|++.+++.+.+.-.++-|
T Consensus 334 D~-V~NH~~~~~~~~~~~~~~----~~y~~~~~~~~~~~~w~--------~~~~n~~~~~v~~~l~~~~~~W~~e~ 396 (726)
T PRK05402 334 DW-VPAHFPKDAHGLARFDGT----ALYEHADPREGEHPDWG--------TLIFNYGRNEVRNFLVANALYWLEEF 396 (726)
T ss_pred EE-CCCCCCCCccchhccCCC----cceeccCCcCCccCCCC--------CccccCCCHHHHHHHHHHHHHHHHHh
Confidence 88 68998531 1111000 0000000 01122 12478899999999999988888754
No 33
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=91.01 E-value=1.2 Score=45.11 Aligned_cols=155 Identities=12% Similarity=0.141 Sum_probs=89.9
Q ss_pred cccceeeeCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHH
Q 044344 179 FAHRGLILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGL 258 (587)
Q Consensus 179 f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~ 258 (587)
+.+||+-.. +..-....+.++.|+..++|.+-+.+. |..-.+.-|... + ..-..+.++++|+.|+
T Consensus 8 v~~~G~n~~----w~~~~~~~~~~~~~~~~G~n~VRi~v~----~~~~~~~~~~~~----~---~~~~~~~ld~~v~~a~ 72 (281)
T PF00150_consen 8 VNWRGFNTH----WYNPSITEADFDQLKALGFNTVRIPVG----WEAYQEPNPGYN----Y---DETYLARLDRIVDAAQ 72 (281)
T ss_dssp EEEEEEEET----TSGGGSHHHHHHHHHHTTESEEEEEEE----STSTSTTSTTTS----B---THHHHHHHHHHHHHHH
T ss_pred EEeeeeecc----cCCCCCHHHHHHHHHHCCCCEEEeCCC----HHHhcCCCCCcc----c---cHHHHHHHHHHHHHHH
Confidence 356777655 443348889999999999999999986 311111111110 0 0113478999999999
Q ss_pred hcCCEEEecCCCCCchhhHHHhCchhhhhcccCcCCCCCcccccccCCCCCCcCCCCChhHHHHHHHHHHHHHHhCCCCe
Q 044344 259 THGVRVLPEIDSPGHTGSWAEAYPEIVTCANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNLFPEAF 338 (587)
Q Consensus 259 ~rgI~VIPEID~PGH~~a~~~~~p~l~~c~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~Ev~~lF~~~~ 338 (587)
++||.||..+ |.. |.. +. .+......+...+.+.++++.++.-|.+.-
T Consensus 73 ~~gi~vild~----h~~------~~w--~~--------------------~~~~~~~~~~~~~~~~~~~~~la~~y~~~~ 120 (281)
T PF00150_consen 73 AYGIYVILDL----HNA------PGW--AN--------------------GGDGYGNNDTAQAWFKSFWRALAKRYKDNP 120 (281)
T ss_dssp HTT-EEEEEE----EES------TTC--SS--------------------STSTTTTHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hCCCeEEEEe----ccC------ccc--cc--------------------cccccccchhhHHHHHhhhhhhccccCCCC
Confidence 9999999865 332 111 10 011223345567778888888988884322
Q ss_pred eeeccC---CcCCCCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCe
Q 044344 339 YHAGAD---EIIPGCWKADSTIQSFLSNGGTLSQLLEKFVGSTLPYIVFFNRT 388 (587)
Q Consensus 339 iHIGgD---Ev~~~~w~~~p~~~~~~~~~~~~~~l~~~f~~~~~~~l~~~gk~ 388 (587)
-++|=| |....... ..+ .....+.+..|.+++.+.|++.+.+
T Consensus 121 ~v~~~el~NEP~~~~~~-----~~w---~~~~~~~~~~~~~~~~~~Ir~~~~~ 165 (281)
T PF00150_consen 121 PVVGWELWNEPNGGNDD-----ANW---NAQNPADWQDWYQRAIDAIRAADPN 165 (281)
T ss_dssp TTEEEESSSSGCSTTST-----TTT---SHHHTHHHHHHHHHHHHHHHHTTSS
T ss_pred cEEEEEecCCccccCCc-----ccc---ccccchhhhhHHHHHHHHHHhcCCc
Confidence 244432 32221110 000 0012345678899999999987653
No 34
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=90.00 E-value=3.7 Score=46.76 Aligned_cols=75 Identities=9% Similarity=0.139 Sum_probs=52.1
Q ss_pred ChHHHHHHHHHHHhCCCcEEEEEee---CCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecCCC
Q 044344 194 GVDDILRTIKTMSFNKMNVFHWHIT---DSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEIDS 270 (587)
Q Consensus 194 ~~~~lk~~Id~ma~~KlN~lh~Hlt---Ddq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~ 270 (587)
.+.-|.+-||.++..++|.+++-.. ....+.|.+..|=.+.. .+=|.+|+++||+-|+++||.||-.+ +
T Consensus 31 dl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~-------~~Gt~~d~~~lv~~~h~~gi~vilD~-V 102 (551)
T PRK10933 31 DLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDP-------TYGTLDDFDELVAQAKSRGIRIILDM-V 102 (551)
T ss_pred CHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCc-------ccCCHHHHHHHHHHHHHCCCEEEEEE-C
Confidence 4566778889999999999987542 11112233222211111 12289999999999999999999998 8
Q ss_pred CCchhh
Q 044344 271 PGHTGS 276 (587)
Q Consensus 271 PGH~~a 276 (587)
+-|+..
T Consensus 103 ~NH~s~ 108 (551)
T PRK10933 103 FNHTST 108 (551)
T ss_pred CCCccC
Confidence 889865
No 35
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=89.07 E-value=2.1 Score=49.96 Aligned_cols=126 Identities=12% Similarity=0.135 Sum_probs=71.3
Q ss_pred HHHHHHhCCCcEEEEEeeCCC-------------CCCccCCCCCccccCCCCCCCCCC----CHHHHHHHHHHHHhcCCE
Q 044344 201 TIKTMSFNKMNVFHWHITDSH-------------SFPLVLPSEPDLAAKGSYGHDMQY----SPDDVKKIVEFGLTHGVR 263 (587)
Q Consensus 201 ~Id~ma~~KlN~lh~HltDdq-------------~fr~e~~~~P~Lt~~ga~~~~~~Y----T~~ei~eiv~yA~~rgI~ 263 (587)
.||.+..+++|.+++=..=+. .|.|....| +..+..| +.+|+|+||+-|.++||+
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y--------~a~d~~y~~~g~~~efk~LV~~~H~~GI~ 260 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGF--------FAPEPRYLASGQVAEFKTMVRALHDAGIE 260 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccc--------cccChhhcCCCCHHHHHHHHHHHHHCCCE
Confidence 478999999999987543110 122221111 1123344 689999999999999999
Q ss_pred EEecCCCCCchhhHHHhCchhhh--hcccCcCC-CCCcccccccCCCCCCcCCCCChhHHHHHHHHHHHHHHhCC
Q 044344 264 VLPEIDSPGHTGSWAEAYPEIVT--CANKFWWP-AESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNLFP 335 (587)
Q Consensus 264 VIPEID~PGH~~a~~~~~p~l~~--c~~~~~~~-~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~Ev~~lF~ 335 (587)
||-.+ ++.|+..-....|.+.. ..+..++. +..+-+.........+.||..+|++.+++.+.+.-.+.-|.
T Consensus 261 VIlDv-V~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d~l~~W~~e~g 334 (688)
T TIGR02100 261 VILDV-VYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDSLRYWVTEMH 334 (688)
T ss_pred EEEEE-CcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHHHHHHHHHHcC
Confidence 99998 77898643211121100 00000000 00000000000112246899999999999998888876543
No 36
>PLN02784 alpha-amylase
Probab=88.76 E-value=5.4 Score=47.30 Aligned_cols=88 Identities=13% Similarity=0.061 Sum_probs=58.8
Q ss_pred ceeeeCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeeCC--CCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHh
Q 044344 182 RGLILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDS--HSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLT 259 (587)
Q Consensus 182 RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDd--q~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~ 259 (587)
.||.-|+-.+--=-..|++-++.++.+++|.+++-..=. ..+.|....|=.|.. .+=|++|++++|+-|++
T Consensus 507 QgF~Wds~~dg~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds-------~yGT~~ELk~LI~a~H~ 579 (894)
T PLN02784 507 QGFNWESHKSGRWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNS-------RYGTIDELKDLVKSFHE 579 (894)
T ss_pred EeEEcCcCCCCchHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCc-------CcCCHHHHHHHHHHHHH
Confidence 555556554311147888999999999999999865311 012222222211211 12289999999999999
Q ss_pred cCCEEEecCCCCCchhhH
Q 044344 260 HGVRVLPEIDSPGHTGSW 277 (587)
Q Consensus 260 rgI~VIPEID~PGH~~a~ 277 (587)
+||.||-.+ ++.|+...
T Consensus 580 ~GIkVIlDi-ViNH~ag~ 596 (894)
T PLN02784 580 VGIKVLGDA-VLNHRCAH 596 (894)
T ss_pred CCCEEEEEE-Cccccccc
Confidence 999999998 88898643
No 37
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=87.60 E-value=4.5 Score=46.44 Aligned_cols=134 Identities=12% Similarity=0.142 Sum_probs=79.4
Q ss_pred eeeCCCCC--CCC-hHHHHHHHHHHHhCCCcEEEEEeeCC----CCCCccCCCCCccccCCCCCCCCCC-CHHHHHHHHH
Q 044344 184 LILDTSRN--YYG-VDDILRTIKTMSFNKMNVFHWHITDS----HSFPLVLPSEPDLAAKGSYGHDMQY-SPDDVKKIVE 255 (587)
Q Consensus 184 ~mlD~aR~--f~~-~~~lk~~Id~ma~~KlN~lh~HltDd----q~fr~e~~~~P~Lt~~ga~~~~~~Y-T~~ei~eiv~ 255 (587)
+|+-+-+. +.+ .+...++|+.++..++|.+.+-..-. -||-|+...| |.+...| |.+|+|.+|+
T Consensus 150 lHvGs~~~~~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~--------yAp~sryGtPedfk~fVD 221 (628)
T COG0296 150 LHVGSFTPDRFLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGY--------YAPTSRYGTPEDFKALVD 221 (628)
T ss_pred EEeeeccCCCCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCccee--------ccccccCCCHHHHHHHHH
Confidence 45554443 344 37778999999999999988743211 2333332221 1222223 9999999999
Q ss_pred HHHhcCCEEEecCCCCCchhhHHHhCchhhh--hccc--CcCCCCCcccccccCCCCCCcCCCCChhHHHHHHHHHHHHH
Q 044344 256 FGLTHGVRVLPEIDSPGHTGSWAEAYPEIVT--CANK--FWWPAESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIV 331 (587)
Q Consensus 256 yA~~rgI~VIPEID~PGH~~a~~~~~p~l~~--c~~~--~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~Ev~ 331 (587)
.|.++||.||-.. +|||...-......+.. +... ..-.-.++|+. ...|-..+++..|+-+-.---+
T Consensus 222 ~aH~~GIgViLD~-V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~--------~i~~~gr~EVR~Fll~nal~Wl 292 (628)
T COG0296 222 AAHQAGIGVILDW-VPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGT--------AIFNYGRNEVRNFLLANALYWL 292 (628)
T ss_pred HHHHcCCEEEEEe-cCCcCCCCcchhhhcCCccccccCCcccccCCCccc--------chhccCcHHHHHHHHHHHHHHH
Confidence 9999999999988 99999763221111100 0000 00000124443 3345568999999887666666
Q ss_pred HhC
Q 044344 332 NLF 334 (587)
Q Consensus 332 ~lF 334 (587)
+-|
T Consensus 293 ~~y 295 (628)
T COG0296 293 EEY 295 (628)
T ss_pred HHh
Confidence 554
No 38
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=85.92 E-value=3.9 Score=47.13 Aligned_cols=146 Identities=10% Similarity=0.085 Sum_probs=77.6
Q ss_pred ceeeeCCCCC-CCChHHHHHHHHHHHhCCCcEEEEEeeCC------------CCCCccCCCCCccccCCCCCCC---CCC
Q 044344 182 RGLILDTSRN-YYGVDDILRTIKTMSFNKMNVFHWHITDS------------HSFPLVLPSEPDLAAKGSYGHD---MQY 245 (587)
Q Consensus 182 RG~mlD~aR~-f~~~~~lk~~Id~ma~~KlN~lh~HltDd------------q~fr~e~~~~P~Lt~~ga~~~~---~~Y 245 (587)
||-.+..+.+ -....-+.+.||.+..+++|.+++-..=+ ..|.|....|=.. .++|+.+ +.-
T Consensus 149 ~G~f~~~~e~~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~--~~~y~~~p~~~~~ 226 (605)
T TIGR02104 149 KGKYLGLTETGTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVP--EGSYSTNPYDPAT 226 (605)
T ss_pred CCceeeeeccCccccccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCc--ChhhhcCCCccch
Confidence 5544444322 11234556779999999999999854321 1244443322111 1112111 111
Q ss_pred CHHHHHHHHHHHHhcCCEEEecCCCCCchhhH-HHhCchhhhhcccCcCCCCCcccccccCCCCCCcCCCCChhHHHHHH
Q 044344 246 SPDDVKKIVEFGLTHGVRVLPEIDSPGHTGSW-AEAYPEIVTCANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKILK 324 (587)
Q Consensus 246 T~~ei~eiv~yA~~rgI~VIPEID~PGH~~a~-~~~~p~l~~c~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~ 324 (587)
+.+|+|+||+-|.++||+||-.+ ++.|+... ...+..+ .+.++... ..++.........+.++-.+|++.+++.
T Consensus 227 ~~~efk~lV~~~H~~Gi~VilDv-V~NH~~~~~~~~f~~~---~~~~~~~~-~~~g~~~~~~g~~~~~~~~~~~v~~~i~ 301 (605)
T TIGR02104 227 RIRELKQMIQALHENGIRVIMDV-VYNHTYSREESPFEKT---VPGYYYRY-NEDGTLSNGTGVGNDTASEREMMRKFIV 301 (605)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEE-EcCCccCCCCCcccCC---CCCeeEEE-CCCCCccCCCcccCCcccCCHHHHHHHH
Confidence 25899999999999999999998 78898531 1011110 00010000 0000000000112356777899999999
Q ss_pred HHHHHHHHhC
Q 044344 325 NVINDIVNLF 334 (587)
Q Consensus 325 ~v~~Ev~~lF 334 (587)
+.+.-.++-|
T Consensus 302 ~~~~~W~~e~ 311 (605)
T TIGR02104 302 DSVLYWVKEY 311 (605)
T ss_pred HHHHHHHHHc
Confidence 8888777644
No 39
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=85.65 E-value=28 Score=38.05 Aligned_cols=166 Identities=17% Similarity=0.194 Sum_probs=107.8
Q ss_pred CCCcceEEEeecCC--CeEEEEecChhhhhHHHHHHHHhhcCCCCeeeeeceEEEccCCcccceee----eC--CCCCC-
Q 044344 122 GVNETYTLSIPADA--SIANLTAHTVWGAMRGLETFSQLVWGKPNLLVASGLYVWDSPLFAHRGLI----LD--TSRNY- 192 (587)
Q Consensus 122 ~~~E~Y~L~i~~~~--~~i~I~a~~~~G~~~g~~Tl~Ql~~~~~~~~~p~~~~I~D~P~f~~RG~m----lD--~aR~f- 192 (587)
.++|||-|.....+ ....|.|++..|++||+=-|+.|++-.. .+. .+.|...|+-..|-+- || +-|.|
T Consensus 91 LgEEGy~irt~~~~g~~~lvi~g~t~~gvlYG~F~ll~liq~g~--~v~-kl~iv~~Pk~klRMlNhWDNlDg~iERGYa 167 (684)
T COG3661 91 LGEEGYLIRTVTVGGKATLVIAGNTDIGVLYGVFRLLSLIQTGQ--SVD-KLDIVSVPKVKLRMLNHWDNLDGHIERGYA 167 (684)
T ss_pred ccCcceEEEEEEeCCeEEEEEEeccceeEEeeHHHHHHHHHhcc--chh-hcchhcCcHHHHhhhhhhhccccceecccC
Confidence 46899998765422 3478999999999999988888887332 233 4566677776666441 22 11221
Q ss_pred -----C-------ChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCC-Cc-cccCCCCCCCCCCCHHHHHHHHHHHH
Q 044344 193 -----Y-------GVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSE-PD-LAAKGSYGHDMQYSPDDVKKIVEFGL 258 (587)
Q Consensus 193 -----~-------~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~-P~-Lt~~ga~~~~~~YT~~ei~eiv~yA~ 258 (587)
+ -...+|.+-+.+|..++|-.-+.-.. +++- -. ++.+ =-.+++.|...-+
T Consensus 168 G~SIFf~~n~~~~n~qR~kDYAR~laSiGINg~v~NNVN-------vk~~e~~lit~~---------fl~k~aklAdiFR 231 (684)
T COG3661 168 GQSIFFWWNLPGHNDQRMKDYARALASIGINGTVLNNVN-------VKKAESYLITAP---------FLAKAAKLADIFR 231 (684)
T ss_pred CCceeeeccccccchHHHHHHHHHHhhcCcceEEecccc-------cchhhhheechH---------hHHHHHHHHHHhh
Confidence 1 23678899999999999987765322 1110 00 1110 1245566666778
Q ss_pred hcCCEEEecCCCCCchhhHHHhCchhhhhcccCcCCCCCcccccccCCCCCCcCCCCChhHHHHHHHHHHHHHHhCCC
Q 044344 259 THGVRVLPEIDSPGHTGSWAEAYPEIVTCANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNLFPE 336 (587)
Q Consensus 259 ~rgI~VIPEID~PGH~~a~~~~~p~l~~c~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~Ev~~lF~~ 336 (587)
.+||.|.-.|+.-.-+ +|. +-.+-||.+|.+..+-+.-.+|+-+..|+
T Consensus 232 ~YGIK~yLsinfaSP~--------~lG----------------------gL~TADPLDe~VrawWkeka~~IY~yIPD 279 (684)
T COG3661 232 PYGIKVYLSINFASPM--------ELG----------------------GLKTADPLDEAVRAWWKEKADEIYKYIPD 279 (684)
T ss_pred hccceEEEEeccCCcc--------ccC----------------------CcCcCCcccHHHHHHHHHHHHHHHHhccc
Confidence 9999999887543322 111 11356888999999999999999888875
No 40
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=85.43 E-value=2.8 Score=47.69 Aligned_cols=76 Identities=7% Similarity=0.071 Sum_probs=52.3
Q ss_pred CChHHHHHHHHHHHhCCCcEEEEEeeC---CCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecCC
Q 044344 193 YGVDDILRTIKTMSFNKMNVFHWHITD---SHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEID 269 (587)
Q Consensus 193 ~~~~~lk~~Id~ma~~KlN~lh~HltD---dq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID 269 (587)
=.+.-|.+-+|.++.+++|.+++-..- .....|.+..|=.+.. .+=|.+|+++||+.|+++||+||-.+
T Consensus 24 G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~-------~~Gt~~~~~~lv~~ah~~gi~vilD~- 95 (543)
T TIGR02403 24 GDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINP-------LFGTMADFEELVSEAKKRNIKIMLDM- 95 (543)
T ss_pred cCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCc-------ccCCHHHHHHHHHHHHHCCCEEEEEE-
Confidence 356777888899999999999875421 1112222222211111 12288999999999999999999998
Q ss_pred CCCchhh
Q 044344 270 SPGHTGS 276 (587)
Q Consensus 270 ~PGH~~a 276 (587)
+|-|+..
T Consensus 96 v~NH~~~ 102 (543)
T TIGR02403 96 VFNHTST 102 (543)
T ss_pred Ccccccc
Confidence 8889863
No 41
>PRK03705 glycogen debranching enzyme; Provisional
Probab=85.19 E-value=6.3 Score=45.90 Aligned_cols=120 Identities=15% Similarity=0.215 Sum_probs=71.9
Q ss_pred HHHHHHhCCCcEEEEEeeCCC-------------CCCccCCCCCccccCCCCCCCCCCC------HHHHHHHHHHHHhcC
Q 044344 201 TIKTMSFNKMNVFHWHITDSH-------------SFPLVLPSEPDLAAKGSYGHDMQYS------PDDVKKIVEFGLTHG 261 (587)
Q Consensus 201 ~Id~ma~~KlN~lh~HltDdq-------------~fr~e~~~~P~Lt~~ga~~~~~~YT------~~ei~eiv~yA~~rg 261 (587)
.||.+..+++|.+++=..-+. .|.|....| +..+..|. .+|+|+||+-|.++|
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~y--------fa~d~~ygt~~~~~~~efk~LV~~~H~~G 255 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAM--------FALDPAYASGPETALDEFRDAVKALHKAG 255 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccc--------cccccccCCCCcchHHHHHHHHHHHHHCC
Confidence 488999999999998554211 122211111 11233343 379999999999999
Q ss_pred CEEEecCCCCCchhhHHHhCchhh--hhcc-cCcCCC--C--CcccccccCCCCCCcCCCCChhHHHHHHHHHHHHHHhC
Q 044344 262 VRVLPEIDSPGHTGSWAEAYPEIV--TCAN-KFWWPA--E--SNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNLF 334 (587)
Q Consensus 262 I~VIPEID~PGH~~a~~~~~p~l~--~c~~-~~~~~~--~--~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~Ev~~lF 334 (587)
|+||-.+ ++.|+.......|.+. ...+ .+++-+ + ..|. ...+.||..+|++.+++.+.++-.++-|
T Consensus 256 I~VIlDv-V~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~------g~g~~ln~~~p~Vr~~iid~l~~W~~e~ 328 (658)
T PRK03705 256 IEVILDV-VFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWT------GCGNTLNLSHPAVVDWAIDCLRYWVETC 328 (658)
T ss_pred CEEEEEE-cccCccCcCCCCcchhcccCCCccceEECCCCCcCCCC------CccCcccCCCHHHHHHHHHHHHHHHHHh
Confidence 9999998 7889864221122210 0001 111100 0 0111 1224688999999999999999988765
Q ss_pred C
Q 044344 335 P 335 (587)
Q Consensus 335 ~ 335 (587)
.
T Consensus 329 g 329 (658)
T PRK03705 329 H 329 (658)
T ss_pred C
Confidence 4
No 42
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=85.18 E-value=8 Score=47.52 Aligned_cols=129 Identities=15% Similarity=0.141 Sum_probs=73.1
Q ss_pred ChHHHHHHHHHHHhCCCcEEEEEeeCCCC----------------------CCccCCCCCccccCCCCCCC---CCCCHH
Q 044344 194 GVDDILRTIKTMSFNKMNVFHWHITDSHS----------------------FPLVLPSEPDLAAKGSYGHD---MQYSPD 248 (587)
Q Consensus 194 ~~~~lk~~Id~ma~~KlN~lh~HltDdq~----------------------fr~e~~~~P~Lt~~ga~~~~---~~YT~~ 248 (587)
...-|.+-||.+..+++|.+|+-..=+.+ |.|....|=.+ .+.|+.+ +.-+.+
T Consensus 478 tf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfap--e~~Ygtdp~dp~~ri~ 555 (1111)
T TIGR02102 478 TFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFAL--SGMYSEDPKDPELRIA 555 (1111)
T ss_pred CHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCccc--ccccccCCcCccccHH
Confidence 34555566899999999999987652211 32222221111 1222211 112358
Q ss_pred HHHHHHHHHHhcCCEEEecCCCCCchhhHH---HhCchhhhhcccCcCCCCCcccccccCCCCCCcCCCCChhHHHHHHH
Q 044344 249 DVKKIVEFGLTHGVRVLPEIDSPGHTGSWA---EAYPEIVTCANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKILKN 325 (587)
Q Consensus 249 ei~eiv~yA~~rgI~VIPEID~PGH~~a~~---~~~p~l~~c~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~ 325 (587)
|+|+||+-|.++||+||-.+ ++.|+.... ...|.... +.+. .+. .....+.+.++..++.+.+|+.+
T Consensus 556 EfK~LV~alH~~GI~VILDV-VyNHt~~~~~f~~~~p~Yy~------~~~~--~G~-~~~~~~g~~l~~e~~~vrk~iiD 625 (1111)
T TIGR02102 556 EFKNLINEIHKRGMGVILDV-VYNHTAKVYIFEDLEPNYYH------FMDA--DGT-PRTSFGGGRLGTTHEMSRRILVD 625 (1111)
T ss_pred HHHHHHHHHHHCCCEEEEec-ccccccccccccccCCCceE------eeCC--CCC-cccccCCCCCCcCCHHHHHHHHH
Confidence 99999999999999999998 889986421 11121100 0000 000 00011234577788888888888
Q ss_pred HHHHHHHhC
Q 044344 326 VINDIVNLF 334 (587)
Q Consensus 326 v~~Ev~~lF 334 (587)
.+.-.++-|
T Consensus 626 sl~yWv~ey 634 (1111)
T TIGR02102 626 SIKYLVDEF 634 (1111)
T ss_pred HHHHHHHhc
Confidence 887777654
No 43
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=84.40 E-value=4.1 Score=44.43 Aligned_cols=130 Identities=16% Similarity=0.189 Sum_probs=77.0
Q ss_pred CChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCC-CCCCHHHHHHHHHHHHhcCCEE----Eec
Q 044344 193 YGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHD-MQYSPDDVKKIVEFGLTHGVRV----LPE 267 (587)
Q Consensus 193 ~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~-~~YT~~ei~eiv~yA~~rgI~V----IPE 267 (587)
++.+.|++++|.++.+.++.|.+ |.||--. .-...+..|-|..+ ..+. +-|+.|+++.+++|++. -||
T Consensus 55 ~~e~~i~~~a~~~~~~G~e~fvi----DDGW~~~--r~~d~~~~GdW~~~~~kFP-~Gl~~l~~~i~~~Gmk~GlW~ePe 127 (394)
T PF02065_consen 55 ITEEKILELADAAAELGYEYFVI----DDGWFGG--RDDDNAGLGDWEPDPKKFP-NGLKPLADYIHSLGMKFGLWFEPE 127 (394)
T ss_dssp --HHHHHHHHHHHHHHT-SEEEE-----SSSBCT--ESTTTSTTSBECBBTTTST-THHHHHHHHHHHTT-EEEEEEETT
T ss_pred CCHHHHHHHHHHHHHhCCEEEEE----cCccccc--cCCCcccCCceeEChhhhC-CcHHHHHHHHHHCCCeEEEEeccc
Confidence 56799999999999999998875 4477322 11122334555432 2332 35999999999999874 455
Q ss_pred CCCCCchhhHHHhCchhhhhcccCcCCCCCcccccccCCCCCCcCCCCChhHHHHHHHHHHHHHHhCCCCeeee
Q 044344 268 IDSPGHTGSWAEAYPEIVTCANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNLFPEAFYHA 341 (587)
Q Consensus 268 ID~PGH~~a~~~~~p~l~~c~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~Ev~~lF~~~~iHI 341 (587)
+=.|+ ..+.+.||+.....+.. . .........||+++|++.+++.+.+..+..-..-.||=+
T Consensus 128 ~v~~~--S~l~~~hPdw~l~~~~~-----~-----~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~ 189 (394)
T PF02065_consen 128 MVSPD--SDLYREHPDWVLRDPGR-----P-----PTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKW 189 (394)
T ss_dssp EEESS--SCHCCSSBGGBTCCTTS-----E------ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEE
T ss_pred cccch--hHHHHhCccceeecCCC-----C-----CcCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 43333 33455688764321110 0 000011235999999999999999999877666566544
No 44
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=84.08 E-value=3.8 Score=48.78 Aligned_cols=76 Identities=9% Similarity=0.158 Sum_probs=56.8
Q ss_pred CChHHHHHHHHHHHhCCCcEEEEEee----CCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecC
Q 044344 193 YGVDDILRTIKTMSFNKMNVFHWHIT----DSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEI 268 (587)
Q Consensus 193 ~~~~~lk~~Id~ma~~KlN~lh~Hlt----Ddq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEI 268 (587)
++.+.+.+.++.++.+++|.+.+-.. ....+.|.+..|-.+... +=|.+|++++++-|+++||.||-.|
T Consensus 17 ~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~-------lGt~e~f~~Lv~aah~~Gi~VIlDi 89 (879)
T PRK14511 17 FTFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPE-------LGGEEGLRRLAAALRAHGMGLILDI 89 (879)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCC-------CCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 57788999999999999999987652 122344444444333211 1178999999999999999999999
Q ss_pred CCCCchhh
Q 044344 269 DSPGHTGS 276 (587)
Q Consensus 269 D~PGH~~a 276 (587)
+|-|+..
T Consensus 90 -V~NH~~~ 96 (879)
T PRK14511 90 -VPNHMAV 96 (879)
T ss_pred -ccccccC
Confidence 8899864
No 45
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=83.31 E-value=4.4 Score=48.02 Aligned_cols=77 Identities=9% Similarity=0.167 Sum_probs=56.5
Q ss_pred CCChHHHHHHHHHHHhCCCcEEEEEee----CCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEec
Q 044344 192 YYGVDDILRTIKTMSFNKMNVFHWHIT----DSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPE 267 (587)
Q Consensus 192 f~~~~~lk~~Id~ma~~KlN~lh~Hlt----Ddq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPE 267 (587)
=++.+.+.+.|+.++..++|.+++=.. +...+.|.+..|-.+... +=|.+|++++++-|+++||.||-.
T Consensus 12 ~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~-------lGt~edf~~Lv~aah~~Gm~vIlD 84 (825)
T TIGR02401 12 GFTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPE-------LGGEEGLRRLSEAARARGLGLIVD 84 (825)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCC-------CCCHHHHHHHHHHHHHCCCEEEEE
Confidence 356788999999999999999886542 112244444443333211 117999999999999999999999
Q ss_pred CCCCCchhh
Q 044344 268 IDSPGHTGS 276 (587)
Q Consensus 268 ID~PGH~~a 276 (587)
| +|-|+..
T Consensus 85 i-VpNH~a~ 92 (825)
T TIGR02401 85 I-VPNHMAV 92 (825)
T ss_pred e-ccccccc
Confidence 8 8999964
No 46
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=83.08 E-value=7 Score=48.74 Aligned_cols=125 Identities=13% Similarity=0.156 Sum_probs=67.6
Q ss_pred HHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCC-----CC------CCCCCC---CHHHHHHHHHHHHhcCCEEE
Q 044344 200 RTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKG-----SY------GHDMQY---SPDDVKKIVEFGLTHGVRVL 265 (587)
Q Consensus 200 ~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~g-----a~------~~~~~Y---T~~ei~eiv~yA~~rgI~VI 265 (587)
+.|+.+..+++|.+++-..-. ..+...+...| +| ..+..| |.+|+|++|+-|.++||+||
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~------~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VI 264 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFA------SVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVI 264 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccc------cCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEE
Confidence 567788899999998754311 11111111111 11 123344 78999999999999999999
Q ss_pred ecCCCCCchhhHHHhCchhhhh--ccc-CcCCCCCcccccccCCC-CCCcCCCCChhHHHHHHHHHHHHHH
Q 044344 266 PEIDSPGHTGSWAEAYPEIVTC--ANK-FWWPAESNWTNRLASEP-GTGHLNPLNPKTYKILKNVINDIVN 332 (587)
Q Consensus 266 PEID~PGH~~a~~~~~p~l~~c--~~~-~~~~~~~~~~~~~~~~~-~~~~L~~~~~~t~~fl~~v~~Ev~~ 332 (587)
-.+ ++.|+..-...-|.+... .+. ++..+.. ........- ..+.+|..+|.+.+++.+.++-.++
T Consensus 265 LDv-V~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~-~~~~y~~~~G~gn~~n~~~p~v~~~i~d~lr~Wv~ 333 (1221)
T PRK14510 265 LDV-VFNHTGESNHYGPTLSAYGSDNSPYYRLEPG-NPKEYENWWGCGNLPNLERPFILRLPMDVLRSWAK 333 (1221)
T ss_pred EEE-ccccccCCCCCCCcccccCCCCCCceEecCC-CCCcccCCCCCCCccccCCHHHHHHHHHHHHHHHH
Confidence 998 888986432212222111 011 1100000 000000001 1235677788888888777766554
No 47
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=82.58 E-value=7.2 Score=40.81 Aligned_cols=140 Identities=18% Similarity=0.250 Sum_probs=76.8
Q ss_pred CCcccceeeeCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCC-CCCCCCHHHHHHHHH
Q 044344 177 PLFAHRGLILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYG-HDMQYSPDDVKKIVE 255 (587)
Q Consensus 177 P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~-~~~~YT~~ei~eiv~ 255 (587)
|++.+ |++.--- .+.+-+.++++++.+...++..=.+.+-++ |- ..+- .+.|. +...|. |.+++++
T Consensus 7 P~wa~-G~~~~~~-~y~~~~~v~~~~~~~~~~~iP~d~~~lD~~--w~---~~~~----~~~f~~d~~~FP--d~~~~i~ 73 (308)
T cd06593 7 PAWSF-GLWLSRS-FYYDEEEVNEFADGMRERNLPCDVIHLDCF--WM---KEFQ----WCDFEFDPDRFP--DPEGMLS 73 (308)
T ss_pred chHHH-HHHHHcc-cCCCHHHHHHHHHHHHHcCCCeeEEEEecc--cc---cCCc----ceeeEECcccCC--CHHHHHH
Confidence 45555 5554332 357889999999999999988776666543 21 0110 00110 011222 5789999
Q ss_pred HHHhcCCEEEecCCCCCchhhHHHhCchhhhhcccCc-CCCCCcccccccCCCCCCcCCCCChhHHHHHHHHHHHHHHh
Q 044344 256 FGLTHGVRVLPEIDSPGHTGSWAEAYPEIVTCANKFW-WPAESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNL 333 (587)
Q Consensus 256 yA~~rgI~VIPEID~PGH~~a~~~~~p~l~~c~~~~~-~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~Ev~~l 333 (587)
..+++|++|+.-++ |. ...-...|.+... .+-+. .+++..... ..-......+|.+||++.++..+.++++.+.
T Consensus 74 ~l~~~G~~~~~~~~-P~-i~~~~~~~~e~~~-~g~~v~~~~g~~~~~-~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~ 148 (308)
T cd06593 74 RLKEKGFKVCLWIN-PY-IAQKSPLFKEAAE-KGYLVKKPDGSVWQW-DLWQPGMGIIDFTNPDACKWYKDKLKPLLDM 148 (308)
T ss_pred HHHHCCCeEEEEec-CC-CCCCchhHHHHHH-CCeEEECCCCCeeee-cccCCCcccccCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999775 42 1100011112110 00000 011110000 0000123569999999999999999988763
No 48
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=81.71 E-value=5.1 Score=44.78 Aligned_cols=78 Identities=9% Similarity=0.135 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEEee-CCC----CCCccCCCCCcccc---CCCCCCCCCCCHHHHHHHHHHHHhcCCEEEec
Q 044344 196 DDILRTIKTMSFNKMNVFHWHIT-DSH----SFPLVLPSEPDLAA---KGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPE 267 (587)
Q Consensus 196 ~~lk~~Id~ma~~KlN~lh~Hlt-Ddq----~fr~e~~~~P~Lt~---~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPE 267 (587)
..|.+-+|.++.+++|.+.+=.. .+. .+.|....|=.|.+ .|.- ...+=|.+|+++||+-|++|||.||-.
T Consensus 22 ~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~i-d~~fGt~~dl~~Li~~~H~~Gi~vi~D 100 (479)
T PRK09441 22 NRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTV-RTKYGTKEELLNAIDALHENGIKVYAD 100 (479)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCc-CcCcCCHHHHHHHHHHHHHCCCEEEEE
Confidence 55777789999999999987542 111 12333222211110 0000 001128999999999999999999999
Q ss_pred CCCCCchh
Q 044344 268 IDSPGHTG 275 (587)
Q Consensus 268 ID~PGH~~ 275 (587)
+ ++-|+.
T Consensus 101 ~-V~NH~~ 107 (479)
T PRK09441 101 V-VLNHKA 107 (479)
T ss_pred E-Cccccc
Confidence 8 889986
No 49
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=80.63 E-value=5 Score=45.53 Aligned_cols=75 Identities=12% Similarity=0.118 Sum_probs=52.3
Q ss_pred ChHHHHHHHHHHHhCCCcEEEEEeeCC---CCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecCCC
Q 044344 194 GVDDILRTIKTMSFNKMNVFHWHITDS---HSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEIDS 270 (587)
Q Consensus 194 ~~~~lk~~Id~ma~~KlN~lh~HltDd---q~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~ 270 (587)
...-|.+-||.++.+++|.+++-..=. ..+.|....|=.+.. .+=|.+|+++||+-|+++||+||-.+ +
T Consensus 26 dl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~-------~~Gt~~df~~Lv~~ah~~Gi~vilD~-V 97 (539)
T TIGR02456 26 DFPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILP-------EFGTIDDFKDFVDEAHARGMRVIIDL-V 97 (539)
T ss_pred CHHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccCh-------hhCCHHHHHHHHHHHHHCCCEEEEEe-c
Confidence 467778889999999999998754311 112333222212211 11178999999999999999999998 8
Q ss_pred CCchhh
Q 044344 271 PGHTGS 276 (587)
Q Consensus 271 PGH~~a 276 (587)
+.|+..
T Consensus 98 ~NH~s~ 103 (539)
T TIGR02456 98 LNHTSD 103 (539)
T ss_pred cCcCCC
Confidence 899854
No 50
>PLN02361 alpha-amylase
Probab=80.29 E-value=21 Score=39.06 Aligned_cols=72 Identities=11% Similarity=0.006 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeeC-CC-CCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecCCCCCc
Q 044344 196 DDILRTIKTMSFNKMNVFHWHITD-SH-SFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEIDSPGH 273 (587)
Q Consensus 196 ~~lk~~Id~ma~~KlN~lh~HltD-dq-~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~PGH 273 (587)
..|++-++.++..+++.+.+-..= .. ...|....|=.+. ..+=|++|++++|+-|+++||+||-.+ ++-|
T Consensus 29 ~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~-------~~~Gt~~el~~li~~~h~~gi~vi~D~-V~NH 100 (401)
T PLN02361 29 RNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLN-------SAYGSEHLLKSLLRKMKQYNVRAMADI-VINH 100 (401)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccC-------cccCCHHHHHHHHHHHHHcCCEEEEEE-cccc
Confidence 677888899999999999875421 10 0111111111111 112289999999999999999999998 6788
Q ss_pred hh
Q 044344 274 TG 275 (587)
Q Consensus 274 ~~ 275 (587)
+.
T Consensus 101 ~~ 102 (401)
T PLN02361 101 RV 102 (401)
T ss_pred cc
Confidence 74
No 51
>PRK10785 maltodextrin glucosidase; Provisional
Probab=79.04 E-value=6.3 Score=45.37 Aligned_cols=79 Identities=10% Similarity=0.096 Sum_probs=55.3
Q ss_pred CCCC--ChHHHHHHHHHHHhCCCcEEEEEeeCC--CCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEE
Q 044344 190 RNYY--GVDDILRTIKTMSFNKMNVFHWHITDS--HSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVL 265 (587)
Q Consensus 190 R~f~--~~~~lk~~Id~ma~~KlN~lh~HltDd--q~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VI 265 (587)
+.|+ .++-|.+-||.++.+++|.+++-.-=. ..++|....|=++.. .+=|.+|+++||+-|++|||+||
T Consensus 171 ~~f~GGDl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp-------~~Gt~~df~~Lv~~aH~rGikVi 243 (598)
T PRK10785 171 STFYGGDLDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDP-------QLGGDAALLRLRHATQQRGMRLV 243 (598)
T ss_pred ccccCcCHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCc-------ccCCHHHHHHHHHHHHHCCCEEE
Confidence 4455 478888889999999999999765211 122333322222211 12288999999999999999999
Q ss_pred ecCCCCCchhh
Q 044344 266 PEIDSPGHTGS 276 (587)
Q Consensus 266 PEID~PGH~~a 276 (587)
-.+ ++.|++.
T Consensus 244 lD~-V~NH~~~ 253 (598)
T PRK10785 244 LDG-VFNHTGD 253 (598)
T ss_pred EEE-CCCcCCC
Confidence 998 7889874
No 52
>PLN03244 alpha-amylase; Provisional
Probab=73.58 E-value=8.1 Score=45.44 Aligned_cols=133 Identities=11% Similarity=0.122 Sum_probs=75.2
Q ss_pred CCCHHHHHHHHHHHHhcCCEEEecCCCCCchhhHHH-hCchhhhhcccCcCCCC----CcccccccCCCCCCcCCCCChh
Q 044344 244 QYSPDDVKKIVEFGLTHGVRVLPEIDSPGHTGSWAE-AYPEIVTCANKFWWPAE----SNWTNRLASEPGTGHLNPLNPK 318 (587)
Q Consensus 244 ~YT~~ei~eiv~yA~~rgI~VIPEID~PGH~~a~~~-~~p~l~~c~~~~~~~~~----~~~~~~~~~~~~~~~L~~~~~~ 318 (587)
+=|.+|+|++|+-|.++||.||-.+ ++.|+..-.. ....+......+...+. ..|+ +..+|..+++
T Consensus 437 YGTPeDLK~LVD~aH~~GI~VILDv-V~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WG--------s~~fnyg~~E 507 (872)
T PLN03244 437 YGTPDDFKRLVDEAHGLGLLVFLDI-VHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWG--------TRMFKYGDLD 507 (872)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEe-cCccCCCccccchhhcCCCccceeccCCCCccCCCC--------CceecCCCHH
Confidence 3389999999999999999999998 7899964210 00001000001110110 1232 3468889999
Q ss_pred HHHHHHHHHHHHHHhCC-----------CCeeeeccCCcCCCCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCC
Q 044344 319 TYKILKNVINDIVNLFP-----------EAFYHAGADEIIPGCWKADSTIQSFLSNGGTLSQLLEKFVGSTLPYIVFFNR 387 (587)
Q Consensus 319 t~~fl~~v~~Ev~~lF~-----------~~~iHIGgDEv~~~~w~~~p~~~~~~~~~~~~~~l~~~f~~~~~~~l~~~gk 387 (587)
+.+||-+.+.-.++-|. --|.|-|- +-+...+...+. ...+.+. ..|+..+...+++...
T Consensus 508 Vr~FLLsna~yWleEyhIDGFRfDaVtSMLY~d~G~-~~f~g~~~~y~n------~~~d~dA--v~fL~laN~~ih~~~P 578 (872)
T PLN03244 508 VLHFLISNLNWWITEYQIDGFQFHSLASMIYTHNGF-ASFNGDLDDYCN------QYVDKDA--LMYLILANEILHALHP 578 (872)
T ss_pred HHHHHHHHHHHHHHHhCcCcceeecchhheeecccc-ccccCCcccccc------ccCCchH--HHHHHHHHHHHHHhCC
Confidence 99999999998887653 13666553 111111111000 0112222 3677777777777665
Q ss_pred eEEEEcc
Q 044344 388 TVVYWED 394 (587)
Q Consensus 388 ~~~~W~d 394 (587)
..+.=.|
T Consensus 579 ~~itIAE 585 (872)
T PLN03244 579 KIITIAE 585 (872)
T ss_pred CeEEEEE
Confidence 5544444
No 53
>PLN02187 rooty/superroot1
Probab=73.52 E-value=9.8 Score=42.27 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..||++++++|++.|+++||-||-
T Consensus 219 ~v~s~e~l~~i~~~a~~~~i~iI~ 242 (462)
T PLN02187 219 NVYSHDHLKKVAETARKLGIMVIS 242 (462)
T ss_pred CccCHHHHHHHHHHHHHCCCEEEE
Confidence 479999999999999999998874
No 54
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=73.00 E-value=21 Score=37.74 Aligned_cols=141 Identities=20% Similarity=0.236 Sum_probs=75.7
Q ss_pred CCcccceeeeCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCC-C--ccccCCCCCCCCCCCHHHHHHH
Q 044344 177 PLFAHRGLILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSE-P--DLAAKGSYGHDMQYSPDDVKKI 253 (587)
Q Consensus 177 P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~-P--~Lt~~ga~~~~~~YT~~ei~ei 253 (587)
|++.+.+.+ +|.+.+.+.++++++.|..+++-.=.+||-|.....-...++ . ..+ |.+ ..| .|.+++
T Consensus 7 P~wa~G~~~---~~~~~s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~----~d~-~~F--Pdp~~m 76 (317)
T cd06594 7 PDWAYGGAI---LGLQGGTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWE----WDP-ERY--PGLDEL 76 (317)
T ss_pred chhhhCcEE---eeeeCCHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeE----ECh-hhC--CCHHHH
Confidence 556655555 344459999999999999998876555664322110000000 0 000 111 112 367899
Q ss_pred HHHHHhcCCEEEecCCCCCchhhHHHhCchhhhhcccCcC--CCCCcccccccCCCCCCcCCCCChhHHHHHHHHHHHHH
Q 044344 254 VEFGLTHGVRVLPEIDSPGHTGSWAEAYPEIVTCANKFWW--PAESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIV 331 (587)
Q Consensus 254 v~yA~~rgI~VIPEID~PGH~~a~~~~~p~l~~c~~~~~~--~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~Ev~ 331 (587)
|+.-+++|++||+-|+ |+=...-...|.+... ..+.. ++++++.... -......+|.+||++.+...+.++++.
T Consensus 77 i~~Lh~~G~~~~~~i~-P~v~~~~~~~y~~~~~--~g~~vk~~~g~~~~~~~-w~g~~~~~Dftnp~a~~ww~~~~~~~~ 152 (317)
T cd06594 77 IEELKARGIRVLTYIN-PYLADDGPLYYEEAKD--AGYLVKDADGSPYLVDF-GEFDCGVLDLTNPAARDWFKQVIKEML 152 (317)
T ss_pred HHHHHHCCCEEEEEec-CceecCCchhHHHHHH--CCeEEECCCCCeeeecc-CCCCceeeecCCHHHHHHHHHHHHHHh
Confidence 9999999999999876 5432110000122211 00000 1111100000 001235699999999999988888873
No 55
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=72.36 E-value=9.5 Score=41.90 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..|+.+++++|++.|+++||-||-
T Consensus 205 ~v~~~~~l~~i~~~a~~~~i~ii~ 228 (430)
T PLN00145 205 SVYSYEHLAKIAETARKLGILVIA 228 (430)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEE
Confidence 479999999999999999998884
No 56
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=71.65 E-value=18 Score=39.79 Aligned_cols=145 Identities=19% Similarity=0.265 Sum_probs=77.3
Q ss_pred CCcccceeeeCCCCC-CCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHH
Q 044344 177 PLFAHRGLILDTSRN-YYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVE 255 (587)
Q Consensus 177 P~f~~RG~mlD~aR~-f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~ 255 (587)
|++.. |+++ +|. +.+.+.++++|+.|...++-.=.+++.++... .+..++ |. ...+ .+.+++++
T Consensus 26 P~wal-G~~~--~~~~~~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-----~~~~f~----~d-~~~F--Pd~~~~~~ 90 (441)
T PF01055_consen 26 PRWAL-GFWQ--SRWGYYNQDEVREVIDRYRSNGIPLDVIWIDDDYQD-----GYGDFT----WD-PERF--PDPKQMID 90 (441)
T ss_dssp -GGGG-SEEE--EESTBTSHHHHHHHHHHHHHTT--EEEEEE-GGGSB-----TTBTT-----B--TTTT--TTHHHHHH
T ss_pred chhhh-ceEe--ecCcCCCHHHHHHHHHHHHHcCCCccceeccccccc-----cccccc----cc-cccc--cchHHHHH
Confidence 45666 8887 444 35789999999999999999777776554111 111111 11 1122 28899999
Q ss_pred HHHhcCCEEEecCCCCCchhhHHHhCchhhhhcc-cCcC--CCCCcccccccCCC-CCCcCCCCChhHHHHHHHHHHHHH
Q 044344 256 FGLTHGVRVLPEIDSPGHTGSWAEAYPEIVTCAN-KFWW--PAESNWTNRLASEP-GTGHLNPLNPKTYKILKNVINDIV 331 (587)
Q Consensus 256 yA~~rgI~VIPEID~PGH~~a~~~~~p~l~~c~~-~~~~--~~~~~~~~~~~~~~-~~~~L~~~~~~t~~fl~~v~~Ev~ 331 (587)
..+++||++++-++--=+..+- .++.+..+.. .+.. ++++.+... .-+ ....+|.++|++.++..+.++++.
T Consensus 91 ~l~~~G~~~~~~~~P~v~~~~~--~~~~~~~~~~~~~~v~~~~g~~~~~~--~w~g~~~~~Dftnp~a~~w~~~~~~~~~ 166 (441)
T PF01055_consen 91 ELHDQGIKVVLWVHPFVSNDSP--DYENYDEAKEKGYLVKNPDGSPYIGR--VWPGKGGFIDFTNPEARDWWKEQLKELL 166 (441)
T ss_dssp HHHHTT-EEEEEEESEEETTTT--B-HHHHHHHHTT-BEBCTTSSB-EEE--ETTEEEEEB-TTSHHHHHHHHHHHHHHH
T ss_pred hHhhCCcEEEEEeecccCCCCC--cchhhhhHhhcCceeecccCCccccc--ccCCcccccCCCChhHHHHHHHHHHHHH
Confidence 9999999999866431111111 0111111111 1000 111111000 001 135699999999999999999998
Q ss_pred HhCCCCeee
Q 044344 332 NLFPEAFYH 340 (587)
Q Consensus 332 ~lF~~~~iH 340 (587)
+.+.-..+=
T Consensus 167 ~~~Gvdg~w 175 (441)
T PF01055_consen 167 DDYGVDGWW 175 (441)
T ss_dssp TTST-SEEE
T ss_pred hccCCceEE
Confidence 885544333
No 57
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=70.83 E-value=74 Score=38.55 Aligned_cols=124 Identities=6% Similarity=0.065 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhcCCEEEecCCCCCchhhHHHhCch-hhhhcccCcCCCCCcccccccCCCCCCcCCCCChhHHHHHHHH
Q 044344 248 DDVKKIVEFGLTHGVRVLPEIDSPGHTGSWAEAYPE-IVTCANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKILKNV 326 (587)
Q Consensus 248 ~ei~eiv~yA~~rgI~VIPEID~PGH~~a~~~~~p~-l~~c~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v 326 (587)
+|+|++|+-|.++||+||-.+ ++-|+......... |....+.++.....+ +. .....+++-++..++.+.+++.+.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV-VyNHt~~~g~~~~s~ld~~~P~YY~r~~~~-G~-~~n~~~~~d~a~e~~~Vrk~iiDs 480 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV-VYNHTNASGPNDRSVLDKIVPGYYHRLNED-GG-VENSTCCSNTATEHRMMAKLIVDS 480 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe-ecccccccCccCcccccccCcHhhEeeCCC-CC-eecCCCCcCCCCCCHHHHHHHHHH
Confidence 699999999999999999988 78888642110000 000000111000000 00 111122344567788888888877
Q ss_pred HHHHHHhCCCCeeeeccCCcCCCCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCeEEEEccccc
Q 044344 327 INDIVNLFPEAFYHAGADEIIPGCWKADSTIQSFLSNGGTLSQLLEKFVGSTLPYIVFFNRTVVYWEDVLL 397 (587)
Q Consensus 327 ~~Ev~~lF~~~~iHIGgDEv~~~~w~~~p~~~~~~~~~~~~~~l~~~f~~~~~~~l~~~gk~~~~W~d~~~ 397 (587)
+.-.++-|. -|=+... ....+-..|++++.+.+++.+...++-+|...
T Consensus 481 l~~W~~ey~-------VDGFRfD----------------lm~~~~~~f~~~~~~~l~~i~pdi~l~GEgW~ 528 (898)
T TIGR02103 481 LVVWAKDYK-------VDGFRFD----------------LMGHHPKAQMLAAREAIKALTPEIYFYGEGWD 528 (898)
T ss_pred HHHHHHHcC-------CCEEEEe----------------chhhCCHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence 776665332 1111111 01122346777777788887777777677654
No 58
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=70.46 E-value=12 Score=40.62 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..||++++++|+++|++++|-||-
T Consensus 178 av~~~~~l~~i~~~a~~~~i~ii~ 201 (393)
T COG0436 178 AVYSKEELKAIVELAREHDIIIIS 201 (393)
T ss_pred cCCCHHHHHHHHHHHHHcCeEEEE
Confidence 479999999999999999999996
No 59
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=69.93 E-value=5.5 Score=46.03 Aligned_cols=123 Identities=15% Similarity=0.170 Sum_probs=71.5
Q ss_pred HHHHHHHHHhCCCcEEEEEeeCCC-----CCCccCCCCCccccCCCCCCCCCCCHH------HHHHHHHHHHhcCCEEEe
Q 044344 198 ILRTIKTMSFNKMNVFHWHITDSH-----SFPLVLPSEPDLAAKGSYGHDMQYSPD------DVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 198 lk~~Id~ma~~KlN~lh~HltDdq-----~fr~e~~~~P~Lt~~ga~~~~~~YT~~------ei~eiv~yA~~rgI~VIP 266 (587)
..+.|..+..+++|.+|+-..-.. .|.|+...| .+..+.|+ |.+ |+|+||+-|..+||+|+-
T Consensus 257 teKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nF--FapssrYg-----t~~s~~ri~efK~lVd~aHs~GI~VlL 329 (757)
T KOG0470|consen 257 TEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNF--FAPSSRYG-----TPESPCRINEFKELVDKAHSLGIEVLL 329 (757)
T ss_pred hhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEe--eccccccc-----CCCcccchHHHHHHHHHHhhCCcEEeh
Confidence 445577788889999998765333 444443322 11222232 555 999999999999999999
Q ss_pred cCCCCCchhhHHHhCchhh--hhcccCcCCCCCcccccccCC-CCCCcCCCCChhHHHHHHHHHHHHHHh
Q 044344 267 EIDSPGHTGSWAEAYPEIV--TCANKFWWPAESNWTNRLASE-PGTGHLNPLNPKTYKILKNVINDIVNL 333 (587)
Q Consensus 267 EID~PGH~~a~~~~~p~l~--~c~~~~~~~~~~~~~~~~~~~-~~~~~L~~~~~~t~~fl~~v~~Ev~~l 333 (587)
+| +-.|+.+ ....|.-+ .-.+..|+-.+. +.... -+...+|-..+++.+||-+=+.=...-
T Consensus 330 DV-V~sHaa~-n~~d~l~~fdGid~~~Yf~~~~----r~~h~~~~~r~fn~~~~~V~rflL~nLr~WVtE 393 (757)
T KOG0470|consen 330 DV-VHSHAAK-NSKDGLNMFDGIDNSVYFHSGP----RGYHNSWCSRLFNYNHPVVLRFLLSNLRWWVTE 393 (757)
T ss_pred hh-hhhhccc-CcCCcchhccCcCCceEEEeCC----cccccccccccccCCCHHHHHHHHHHHHHHHHh
Confidence 98 7778865 22222211 111111111000 00000 123567888999999987666555443
No 60
>PLN02877 alpha-amylase/limit dextrinase
Probab=69.90 E-value=40 Score=40.95 Aligned_cols=29 Identities=24% Similarity=0.248 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhcCCEEEecCCCCCchhh
Q 044344 247 PDDVKKIVEFGLTHGVRVLPEIDSPGHTGS 276 (587)
Q Consensus 247 ~~ei~eiv~yA~~rgI~VIPEID~PGH~~a 276 (587)
..|+|++|+-+.++||+||-.+ ++-|+..
T Consensus 465 I~efk~mV~~lH~~GI~VImDV-VyNHt~~ 493 (970)
T PLN02877 465 IIEFRKMVQALNRIGLRVVLDV-VYNHLHS 493 (970)
T ss_pred HHHHHHHHHHHHHCCCEEEEEE-CCccccC
Confidence 3689999999999999999988 8889853
No 61
>PLN00196 alpha-amylase; Provisional
Probab=68.38 E-value=18 Score=39.93 Aligned_cols=73 Identities=12% Similarity=0.166 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEee-C---CCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecCCC
Q 044344 195 VDDILRTIKTMSFNKMNVFHWHIT-D---SHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEIDS 270 (587)
Q Consensus 195 ~~~lk~~Id~ma~~KlN~lh~Hlt-D---dq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~ 270 (587)
...|.+-|+.++..+++.+.+=.. + ++|+ ....|=.+ +. ..+=|++|+++||+-|+++||.||-.+ +
T Consensus 43 ~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY--~~~D~y~l---d~---~~fGt~~elk~Lv~~aH~~GIkVilDv-V 113 (428)
T PLN00196 43 YNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGY--MPGRLYDL---DA---SKYGNEAQLKSLIEAFHGKGVQVIADI-V 113 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCC--CccccCCC---Cc---ccCCCHHHHHHHHHHHHHCCCEEEEEE-C
Confidence 456888899999999999987542 1 1111 11111111 10 012289999999999999999999998 8
Q ss_pred CCchhh
Q 044344 271 PGHTGS 276 (587)
Q Consensus 271 PGH~~a 276 (587)
+-|+.+
T Consensus 114 ~NH~~~ 119 (428)
T PLN00196 114 INHRTA 119 (428)
T ss_pred ccCccc
Confidence 899874
No 62
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=67.72 E-value=17 Score=46.52 Aligned_cols=77 Identities=10% Similarity=0.095 Sum_probs=54.9
Q ss_pred CCCChHHHHHHHHHHHhCCCcEEEEEeeCC----CCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 191 NYYGVDDILRTIKTMSFNKMNVFHWHITDS----HSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 191 ~f~~~~~lk~~Id~ma~~KlN~lh~HltDd----q~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
.=++.+.+.+.|+.++.+++|.+.+-.-=. ..+.|.+..|-.+.. .+=|.++++.|++-|+++||.||-
T Consensus 753 ~~~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp-------~lG~~edf~~Lv~~ah~~Gi~vil 825 (1693)
T PRK14507 753 KDFTFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINP-------EIGGEEGFERFCAALKAHGLGQLL 825 (1693)
T ss_pred CCCCHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCc-------ccCCHHHHHHHHHHHHHCCCEEEE
Confidence 346889999999999999999887643211 112233222222211 112799999999999999999999
Q ss_pred cCCCCCchh
Q 044344 267 EIDSPGHTG 275 (587)
Q Consensus 267 EID~PGH~~ 275 (587)
.| +|.|+.
T Consensus 826 Di-V~NH~~ 833 (1693)
T PRK14507 826 DI-VPNHMG 833 (1693)
T ss_pred Ee-cccccC
Confidence 99 899996
No 63
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=66.98 E-value=38 Score=35.47 Aligned_cols=120 Identities=17% Similarity=0.242 Sum_probs=70.6
Q ss_pred CCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCC-CCCCCHHHHHHHHHHHHhcCCEEEecCC
Q 044344 191 NYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGH-DMQYSPDDVKKIVEFGLTHGVRVLPEID 269 (587)
Q Consensus 191 ~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~-~~~YT~~ei~eiv~yA~~rgI~VIPEID 269 (587)
..++-+.|+++++.|..+++..=.+++-|+ |- +..|.|.- ...|. +.+++++.-+++|+++++-|+
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~--w~---------~~~g~f~~d~~~FP--dp~~mi~~l~~~G~k~~l~i~ 91 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDN--WE---------TCYGDFDFDPTKFP--DPKGMIDQLHDLGFRVTLWVH 91 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCC--cc---------ccCCccccChhhCC--CHHHHHHHHHHCCCeEEEEEC
Confidence 356789999999999999987555555432 31 11122221 12333 589999999999999998775
Q ss_pred CCCchhhHHHhCchhhhhcccCcC--CCC-----CcccccccCCCCCCcCCCCChhHHHHHHHHHHHHHH
Q 044344 270 SPGHTGSWAEAYPEIVTCANKFWW--PAE-----SNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVN 332 (587)
Q Consensus 270 ~PGH~~a~~~~~p~l~~c~~~~~~--~~~-----~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~Ev~~ 332 (587)
|.-.. -...|.+... ..+.. +++ ..|.. .....+|.+||++.++..+.++++..
T Consensus 92 -P~i~~-~s~~~~e~~~--~g~~vk~~~g~~~~~~~~w~-----g~~~~~Dftnp~a~~w~~~~~~~~~~ 152 (303)
T cd06592 92 -PFINT-DSENFREAVE--KGYLVSEPSGDIPALTRWWN-----GTAAVLDFTNPEAVDWFLSRLKSLQE 152 (303)
T ss_pred -CeeCC-CCHHHHhhhh--CCeEEECCCCCCCcccceec-----CCcceEeCCCHHHHHHHHHHHHHHHH
Confidence 32211 0011222111 00000 010 00100 12356999999999999999999883
No 64
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=66.78 E-value=19 Score=39.19 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..||.+++++|++.|+++++-||=
T Consensus 185 ~~~s~~~~~~l~~~a~~~~~~ii~ 208 (409)
T PLN00143 185 SVYSYEHLNKIAETARKLGILVIA 208 (409)
T ss_pred CccCHHHHHHHHHHHHHcCCeEEE
Confidence 479999999999999999998874
No 65
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=66.36 E-value=36 Score=35.92 Aligned_cols=124 Identities=12% Similarity=0.081 Sum_probs=65.2
Q ss_pred CCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecCCCC
Q 044344 192 YYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEIDSP 271 (587)
Q Consensus 192 f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~P 271 (587)
+.+.+.++++++.+..+++..=.+++-.+ .|. -..+..++ |.. ..| -+.+++++..+++||+||+-++ |
T Consensus 20 y~~~~ev~~~~~~~~~~~iP~d~i~lD~~-~~~--~~~~~~f~----~d~-~~F--Pdp~~mi~~L~~~G~kv~~~i~-P 88 (319)
T cd06591 20 YKTQEELLDVAKEYRKRGIPLDVIVQDWF-YWP--KQGWGEWK----FDP-ERF--PDPKAMVRELHEMNAELMISIW-P 88 (319)
T ss_pred CCCHHHHHHHHHHHHHhCCCccEEEEech-hhc--CCCceeEE----ECh-hhC--CCHHHHHHHHHHCCCEEEEEec-C
Confidence 46889999999999999888655555322 110 00000111 111 122 2578999999999999998665 5
Q ss_pred CchhhHHHhCchhhhhcccCcCCCCCcccccccCCC-CCCcCCCCChhHHHHHHHHHHHH
Q 044344 272 GHTGSWAEAYPEIVTCANKFWWPAESNWTNRLASEP-GTGHLNPLNPKTYKILKNVINDI 330 (587)
Q Consensus 272 GH~~a~~~~~p~l~~c~~~~~~~~~~~~~~~~~~~~-~~~~L~~~~~~t~~fl~~v~~Ev 330 (587)
+=. .-...|.+... ..+...+. +.......-+ ....+|.+||++.+...+.+++.
T Consensus 89 ~v~-~~~~~y~e~~~--~g~~v~~~-~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~ 144 (319)
T cd06591 89 TFG-PETENYKEMDE--KGYLIKTD-RGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKN 144 (319)
T ss_pred CcC-CCChhHHHHHH--CCEEEEcC-CCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHH
Confidence 411 00011222211 00000110 0000000011 13579999999999876666553
No 66
>PRK07681 aspartate aminotransferase; Provisional
Probab=63.75 E-value=20 Score=38.63 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVL 265 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VI 265 (587)
..||++++++|++.|+++++-||
T Consensus 181 ~~~s~~~~~~i~~~a~~~~~~iI 203 (399)
T PRK07681 181 AMAHEDFFKEVIAFAKKHNIIVV 203 (399)
T ss_pred cCCCHHHHHHHHHHHHHcCeEEE
Confidence 57999999999999999999887
No 67
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=63.58 E-value=29 Score=37.39 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..+|.+++++|++.|+++++-||=
T Consensus 187 ~~~s~~~~~~l~~~a~~~~~~ii~ 210 (396)
T PRK09257 187 ADLTPEQWDELAELLKERGLIPFL 210 (396)
T ss_pred CCCCHHHHHHHHHHHHhCCcEEEE
Confidence 479999999999999999998874
No 68
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=63.34 E-value=13 Score=40.13 Aligned_cols=33 Identities=36% Similarity=0.495 Sum_probs=28.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCEEEecCCCCCchh
Q 044344 242 DMQYSPDDVKKIVEFGLTHGVRVLPEIDSPGHTG 275 (587)
Q Consensus 242 ~~~YT~~ei~eiv~yA~~rgI~VIPEID~PGH~~ 275 (587)
+.+||++-+++|.+.|+++||.||-. ++-||+-
T Consensus 213 GnVys~~HL~kiae~A~klgi~vIaD-EVY~~~v 245 (447)
T KOG0259|consen 213 GNVYSEDHLKKIAETAKKLGIMVIAD-EVYGHTV 245 (447)
T ss_pred cccccHHHHHHHHHHHHHhCCeEEeh-hhcceee
Confidence 57999999999999999999999975 4677763
No 69
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=62.99 E-value=14 Score=37.09 Aligned_cols=101 Identities=11% Similarity=-0.081 Sum_probs=60.2
Q ss_pred HHHHHHhhcCCCCeeeeeceE--EEccCCcccceeeeCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCC
Q 044344 152 LETFSQLVWGKPNLLVASGLY--VWDSPLFAHRGLILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPS 229 (587)
Q Consensus 152 ~~Tl~Ql~~~~~~~~~p~~~~--I~D~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~ 229 (587)
++.+.+++...+ +.+. ++. ..++ ....||.+++..+.--..+.+++.|+.++..+...+..+. |..-.-..
T Consensus 41 ~~~l~~~l~~~g-l~v~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~i~~~~----g~~~~~~~ 113 (254)
T TIGR03234 41 AEALKARLAAAG-LEQV-LFNLPAGDW-AAGERGIACLPGREEEFREGVALAIAYARALGCPQVNCLA----GKRPAGVS 113 (254)
T ss_pred HHHHHHHHHHcC-CeEE-EEeCCCCcc-ccCCCccccCCccHHHHHHHHHHHHHHHHHhCCCEEEECc----CCCCCCCC
Confidence 466777776543 3333 221 0111 2335666665554433358899999999999999887653 11100000
Q ss_pred CCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecC
Q 044344 230 EPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEI 268 (587)
Q Consensus 230 ~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEI 268 (587)
..+. | ....+.++++++||++.||.+.-|-
T Consensus 114 ~~~~-----~----~~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 114 PEEA-----R----ATLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHH-----H----HHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 0000 0 1234679999999999999999984
No 70
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=62.99 E-value=12 Score=38.36 Aligned_cols=62 Identities=11% Similarity=0.160 Sum_probs=44.2
Q ss_pred CChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecC
Q 044344 193 YGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEI 268 (587)
Q Consensus 193 ~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEI 268 (587)
-.++.+++.|+.++..+.+.+-+|.....+ .... ..| ....+-+++|+++|++.||+|.-|-
T Consensus 82 ~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~-----~~~~-----~~~----~~~~~~l~~l~~~a~~~gi~l~lEn 143 (279)
T cd00019 82 KSIERLKDEIERCEELGIRLLVFHPGSYLG-----QSKE-----EGL----KRVIEALNELIDKAETKGVVIALET 143 (279)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECCCCCCC-----CCHH-----HHH----HHHHHHHHHHHHhccCCCCEEEEeC
Confidence 347889999999999999988877632110 0000 000 1345789999999999999999885
No 71
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=61.12 E-value=23 Score=38.47 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..+|.+++++|++.|+++++-||=
T Consensus 192 ~~~s~~~~~~l~~~a~~~~~~ii~ 215 (412)
T PTZ00433 192 SNFSRKHVEDIIRLCEELRLPLIS 215 (412)
T ss_pred cccCHHHHHHHHHHHHHcCCeEEE
Confidence 468999999999999999998773
No 72
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=60.66 E-value=22 Score=41.01 Aligned_cols=69 Identities=17% Similarity=0.144 Sum_probs=46.4
Q ss_pred HHHHHHHHhCCCcEEEEEeeCCC----CCC--------ccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 199 LRTIKTMSFNKMNVFHWHITDSH----SFP--------LVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 199 k~~Id~ma~~KlN~lh~HltDdq----~fr--------~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..+-|.+...+++.+|+-..-.. ||. |.+-.| .+ ...+=|.+|++++++-|++|||.||-
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~-~I-------dp~~GT~eDf~~L~~~Ah~~G~~vi~ 148 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISF-DI-------DPLLGSEEELIQLSRMAAAHNAITID 148 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccC-cc-------CcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 46678888899999987543211 111 111111 11 01233999999999999999999998
Q ss_pred cCCCCCchhh
Q 044344 267 EIDSPGHTGS 276 (587)
Q Consensus 267 EID~PGH~~a 276 (587)
++ +|.|++.
T Consensus 149 Dl-VpnHTs~ 157 (688)
T TIGR02455 149 DI-IPAHTGK 157 (688)
T ss_pred Ee-CCCCCCC
Confidence 88 8899853
No 73
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=60.00 E-value=15 Score=41.85 Aligned_cols=226 Identities=15% Similarity=0.167 Sum_probs=104.8
Q ss_pred EccCCcccceeeeCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCcc-ccCCCCC--CCCCCCHHHH
Q 044344 174 WDSPLFAHRGLILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDL-AAKGSYG--HDMQYSPDDV 250 (587)
Q Consensus 174 ~D~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~L-t~~ga~~--~~~~YT~~ei 250 (587)
+|+=+||--|++=|..-. .+.+..++.|+.|+.+.+|.++++ |.-||-+.|=.+.- .....|. .+...+.+-|
T Consensus 97 sdW~~fPRYGfls~f~~~-~~~~~~~~~i~~L~~yHIN~~QFY---DW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~V 172 (559)
T PF13199_consen 97 SDWTRFPRYGFLSDFDKS-KSAEDIEAEIDQLNRYHINGLQFY---DWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTV 172 (559)
T ss_dssp SSTTSS--EEEE---GGG-GGHHHHHHHHHHHHHTT--EEEET---S--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHH
T ss_pred CCcccCCcceEecCCCCc-CCchhHHHHHHHHHhhCcCeEEEE---eeccccCCcCCCCCCchhhhhhhhcCCEehHHHH
Confidence 588889999999663322 344899999999999999999975 44444332211111 0001231 1245678899
Q ss_pred HHHHHHHHhcCCEEEecCCCCCchhhHHH--hCchhhhhcccCcCCCCCccc-ccccCC-CC-CCcCCCCChhHHHHHHH
Q 044344 251 KKIVEFGLTHGVRVLPEIDSPGHTGSWAE--AYPEIVTCANKFWWPAESNWT-NRLASE-PG-TGHLNPLNPKTYKILKN 325 (587)
Q Consensus 251 ~eiv~yA~~rgI~VIPEID~PGH~~a~~~--~~p~l~~c~~~~~~~~~~~~~-~~~~~~-~~-~~~L~~~~~~t~~fl~~ 325 (587)
|+.|+-|+++|+..++=.-+-|=..-... ..|+-.. +..+....+. ..+... +. -.-+||+|++=-+.+-+
T Consensus 173 k~yI~~ah~~Gmkam~Ynmiyaa~~~~~~~gv~~eW~l----y~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~ 248 (559)
T PF13199_consen 173 KDYINAAHKYGMKAMAYNMIYAANNNYEEDGVSPEWGL----YKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIIN 248 (559)
T ss_dssp HHHHHHHHHTT-EEEEEEESSEEETT--S--SS-GGBE----EESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHH
T ss_pred HHHHHHHHHcCcceehhHhhhccccCcccccCCchhhh----hhccCCCccceeecCcccccceEEecCCCHHHHHHHHH
Confidence 99999999999999986544433222111 1111100 0000000000 000000 00 13579999998889988
Q ss_pred HHHHHHHhCCCCeeee---ccCCcCCCCCCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCCCc
Q 044344 326 VINDIVNLFPEAFYHA---GADEIIPGCWKADSTIQSFLSNGG-TLSQLLEKFVGSTLPYIVFFNRTVVYWEDVLLDDNV 401 (587)
Q Consensus 326 v~~Ev~~lF~~~~iHI---GgDEv~~~~w~~~p~~~~~~~~~~-~~~~l~~~f~~~~~~~l~~~gk~~~~W~d~~~~~~~ 401 (587)
-+.++.+.|.-.=||| | +-... +..+-. .- ...+-|..|++.+-+.+ ..+.++-+.+-..+..
T Consensus 249 q~~~~~~~~gFDG~hlDq~G-~~~~~--~d~~G~-------~i~~l~~~y~~Fi~~~K~~~---~~k~lv~N~V~~~g~~ 315 (559)
T PF13199_consen 249 QMNKAIQNFGFDGWHLDQLG-NRGTV--YDYDGN-------KIYDLSDGYASFINAMKEAL---PDKYLVFNAVSGYGIE 315 (559)
T ss_dssp HHHHHHHHHT--EEEEE-S---EEEE--GGTT----------GGECHHHHHHHHHHHHHHS---TTSEEEEB-GGGTTHH
T ss_pred HHHHHHHccCCceEeeeccC-CCCcc--ccCCCC-------CchhhHHHHHHHHHHHHHhC---CCCceeeeccCccchh
Confidence 8899988888666664 3 21111 111100 00 23566788888765544 2344666665432211
Q ss_pred ccCCCCCCCCCEEEEecCCC
Q 044344 402 NVRPSFLPKEHTILQTWNNG 421 (587)
Q Consensus 402 ~~~~~~lp~~~~iv~~W~~~ 421 (587)
.+.. .-+-+=.-...|...
T Consensus 316 ~~a~-~~~~d~lY~EvW~~~ 334 (559)
T PF13199_consen 316 QIAK-TSKVDFLYNEVWDDY 334 (559)
T ss_dssp HHTT--S--SSEEEE--SBS
T ss_pred hhhc-ccccceeeeeccccc
Confidence 1111 011123456889753
No 74
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=59.59 E-value=34 Score=36.78 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..||.+++++|++.|+++++-||=
T Consensus 181 ~~~s~~~~~~l~~~a~~~~~~ii~ 204 (396)
T PRK09147 181 AVLPLDDWKKLFALSDRYGFVIAS 204 (396)
T ss_pred ccCCHHHHHHHHHHHHHcCeEEEe
Confidence 479999999999999999998873
No 75
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=59.51 E-value=47 Score=34.97 Aligned_cols=139 Identities=13% Similarity=0.091 Sum_probs=75.0
Q ss_pred CCcccceeeeCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCcc---CCCCCccccCCCCCCCCCCCHHHHHHH
Q 044344 177 PLFAHRGLILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLV---LPSEPDLAAKGSYGHDMQYSPDDVKKI 253 (587)
Q Consensus 177 P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e---~~~~P~Lt~~ga~~~~~~YT~~ei~ei 253 (587)
|++.+ |++.-. ..+.+-+.+.++++.+..+++-+=.+++.++ |--. -..+-..+ |. ...|. |.+++
T Consensus 7 P~wa~-G~~~s~-~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~--w~~~~~~~~~~~~f~----wd-~~~FP--dp~~m 75 (317)
T cd06598 7 PRWAL-GNWASR-FGYRNWQEVDDTIKTLREKDFPLDAAILDLY--WFGKDIDKGHMGNLD----WD-RKAFP--DPAGM 75 (317)
T ss_pred chHHH-HHHHhc-CCCCCHHHHHHHHHHHHHhCCCceEEEEech--hhcCcccCCceeeeE----ec-cccCC--CHHHH
Confidence 55555 666433 2345789999999999999887544444322 2100 00011111 11 12232 56889
Q ss_pred HHHHHhcCCEEEecCCCCCchhhHHHhCchhhhhcccCcCC---CCCcccccccCC-CCCCcCCCCChhHHHHHHHHHHH
Q 044344 254 VEFGLTHGVRVLPEIDSPGHTGSWAEAYPEIVTCANKFWWP---AESNWTNRLASE-PGTGHLNPLNPKTYKILKNVIND 329 (587)
Q Consensus 254 v~yA~~rgI~VIPEID~PGH~~a~~~~~p~l~~c~~~~~~~---~~~~~~~~~~~~-~~~~~L~~~~~~t~~fl~~v~~E 329 (587)
++.-+++||+|++-++--=...+ ..|.|+..- .+.+. .+.... .... .....+|.+||++.++..+.+++
T Consensus 76 i~~L~~~G~k~~~~v~P~v~~~~--~~y~e~~~~--g~l~~~~~~~~~~~--~~~w~g~~~~~Dftnp~a~~w~~~~~~~ 149 (317)
T cd06598 76 IADLAKKGVKTIVITEPFVLKNS--KNWGEAVKA--GALLKKDQGGVPTL--FDFWFGNTGLIDWFDPAAQAWFHDNYKK 149 (317)
T ss_pred HHHHHHcCCcEEEEEcCcccCCc--hhHHHHHhC--CCEEEECCCCCEee--eeccCCCccccCCCCHHHHHHHHHHHHH
Confidence 99999999999998862211111 122233210 00000 000000 0000 12457899999999999999998
Q ss_pred HHH
Q 044344 330 IVN 332 (587)
Q Consensus 330 v~~ 332 (587)
+.+
T Consensus 150 ~~~ 152 (317)
T cd06598 150 LID 152 (317)
T ss_pred hhh
Confidence 744
No 76
>PRK06348 aspartate aminotransferase; Provisional
Probab=59.30 E-value=25 Score=37.73 Aligned_cols=24 Identities=8% Similarity=0.331 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..+|.+++++|++.|+++++-||=
T Consensus 177 ~~~s~~~~~~l~~~a~~~~~~ii~ 200 (384)
T PRK06348 177 AVFSKETLEEIAKIAIEYDLFIIS 200 (384)
T ss_pred cCCCHHHHHHHHHHHHHCCeEEEE
Confidence 478999999999999999998773
No 77
>PRK09505 malS alpha-amylase; Reviewed
Probab=58.72 E-value=37 Score=39.84 Aligned_cols=77 Identities=16% Similarity=0.241 Sum_probs=49.7
Q ss_pred ChHHHHHHHHHHHhCCCcEEEEEeeCCC--C---------CC-ccCCCCC--ccccCCCCCCCCCCCHHHHHHHHHHHHh
Q 044344 194 GVDDILRTIKTMSFNKMNVFHWHITDSH--S---------FP-LVLPSEP--DLAAKGSYGHDMQYSPDDVKKIVEFGLT 259 (587)
Q Consensus 194 ~~~~lk~~Id~ma~~KlN~lh~HltDdq--~---------fr-~e~~~~P--~Lt~~ga~~~~~~YT~~ei~eiv~yA~~ 259 (587)
.+.-|.+-||.+...++|.+.+-..=.+ + |+ +...+|- ....+ ...+=|.+|+++||+-|++
T Consensus 228 dl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~i----d~~~Gt~~dfk~Lv~~aH~ 303 (683)
T PRK09505 228 DLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKL----DANMGTEADLRTLVDEAHQ 303 (683)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccC----CCCCCCHHHHHHHHHHHHH
Confidence 3677888899999999999986432100 0 00 0111110 00000 0112278999999999999
Q ss_pred cCCEEEecCCCCCchh
Q 044344 260 HGVRVLPEIDSPGHTG 275 (587)
Q Consensus 260 rgI~VIPEID~PGH~~ 275 (587)
|||+||-.+ ++-|+.
T Consensus 304 ~Gi~VilD~-V~NH~~ 318 (683)
T PRK09505 304 RGIRILFDV-VMNHTG 318 (683)
T ss_pred CCCEEEEEE-CcCCCc
Confidence 999999998 788887
No 78
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=57.90 E-value=1.7e+02 Score=34.21 Aligned_cols=145 Identities=15% Similarity=0.278 Sum_probs=91.9
Q ss_pred CChHHHHHHHHHHHhCCCcEEEE-EeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecC-CC
Q 044344 193 YGVDDILRTIKTMSFNKMNVFHW-HITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEI-DS 270 (587)
Q Consensus 193 ~~~~~lk~~Id~ma~~KlN~lh~-HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEI-D~ 270 (587)
+|-+.+++-|+.|...++|++-. .+ +|...- |+- |.| -+|.-|.. +++.|.+-||.||--- -+
T Consensus 27 ~p~~~w~ddl~~mk~~G~N~V~ig~f----aW~~~e---P~e---G~f----df~~~D~~-~l~~a~~~Gl~vil~t~P~ 91 (673)
T COG1874 27 WPRETWMDDLRKMKALGLNTVRIGYF----AWNLHE---PEE---GKF----DFTWLDEI-FLERAYKAGLYVILRTGPT 91 (673)
T ss_pred CCHHHHHHHHHHHHHhCCCeeEeeeE----EeeccC---ccc---ccc----CcccchHH-HHHHHHhcCceEEEecCCC
Confidence 35699999999999999998776 44 344322 221 222 13444444 6999999999999765 34
Q ss_pred CCchhhHHHhCchhhhhcccCcCCCCCcccccccCCCCCCcCCCCChhHHHHHHHHHHHHHHh-CCC----CeeeeccCC
Q 044344 271 PGHTGSWAEAYPEIVTCANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNL-FPE----AFYHAGADE 345 (587)
Q Consensus 271 PGH~~a~~~~~p~l~~c~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~Ev~~l-F~~----~~iHIGgDE 345 (587)
.++.....+.|||.....+. +. ....+.-..+|++++--.+.+..|++.+.+- ... -.+|+-- |
T Consensus 92 g~~P~Wl~~~~PeiL~~~~~--------~~--~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dn-e 160 (673)
T COG1874 92 GAPPAWLAKKYPEILAVDEN--------GR--VRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDN-E 160 (673)
T ss_pred CCCchHHhcCChhheEecCC--------Cc--ccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccC-c
Confidence 56666667889998643221 11 1122334569999996677888888888876 431 4567654 6
Q ss_pred cCC-CCCCC-CH-HHHHHHHc
Q 044344 346 IIP-GCWKA-DS-TIQSFLSN 363 (587)
Q Consensus 346 v~~-~~w~~-~p-~~~~~~~~ 363 (587)
+.. .||.. |. ..+.|+++
T Consensus 161 Y~~~~~~~~~~~~~f~~wLk~ 181 (673)
T COG1874 161 YGGHPCYCDYCQAAFRLWLKK 181 (673)
T ss_pred cCCccccccccHHHHHHHHHh
Confidence 655 56643 22 23335554
No 79
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=56.88 E-value=26 Score=37.55 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVL 265 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VI 265 (587)
..||.+++++|++.|+++++-||
T Consensus 180 ~~~s~~~~~~l~~~a~~~~~~ii 202 (388)
T PRK07366 180 AIAPLSFFQEAVAFCQQHDLVLV 202 (388)
T ss_pred ccCCHHHHHHHHHHHHHcCeEEE
Confidence 47999999999999999998777
No 80
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=56.58 E-value=50 Score=35.72 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 242 DMQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 242 ~~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
+..||.+++++|++.|+++++-||-
T Consensus 190 G~~~s~~~~~~l~~~a~~~~~~iI~ 214 (409)
T PRK07590 190 GTVLTKEQLKAWVDYAKENGSLILF 214 (409)
T ss_pred CCcCCHHHHHHHHHHHHHcCeEEEE
Confidence 4589999999999999999997774
No 81
>PLN02656 tyrosine transaminase
Probab=56.11 E-value=39 Score=36.63 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVL 265 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VI 265 (587)
..||.+++++|++.|+++++-||
T Consensus 184 ~~~s~~~~~~i~~~a~~~~~~ii 206 (409)
T PLN02656 184 NVYSYQHLKKIAETAEKLKILVI 206 (409)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEE
Confidence 47899999999999999999887
No 82
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=55.79 E-value=38 Score=36.39 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..||++++++|++.|+++++-||-
T Consensus 180 ~~~s~~~~~~l~~~a~~~~~~ii~ 203 (393)
T TIGR03538 180 AVLSLDTLKKLIELADQYGFIIAS 203 (393)
T ss_pred cccCHHHHHHHHHHHHHCCEEEEE
Confidence 479999999999999999997773
No 83
>PRK07337 aminotransferase; Validated
Probab=55.61 E-value=40 Score=36.06 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEec
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLPE 267 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIPE 267 (587)
..+|.+|+++|++.|+++|+-||-+
T Consensus 178 ~~~~~~~~~~i~~~a~~~~~~ii~D 202 (388)
T PRK07337 178 TSIAPDELRRIVEAVRARGGFTIVD 202 (388)
T ss_pred cCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 4699999999999999999977743
No 84
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=55.53 E-value=52 Score=37.00 Aligned_cols=24 Identities=13% Similarity=0.293 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..||++++++|++.|++++|-||-
T Consensus 214 ~~~s~e~l~~L~~~a~~~~i~lI~ 237 (496)
T PLN02376 214 TMLDKDTLTNLVRFVTRKNIHLVV 237 (496)
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEE
Confidence 479999999999999999998764
No 85
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=55.20 E-value=57 Score=34.81 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..||.+++++|++.|+++++-||-
T Consensus 181 ~~~~~~~~~~l~~~~~~~~~~ii~ 204 (385)
T PRK09276 181 AVADLEFFEEVVDFAKKYDIIVCH 204 (385)
T ss_pred CCCCHHHHHHHHHHHHHCCcEEEE
Confidence 479999999999999999998763
No 86
>PRK10658 putative alpha-glucosidase; Provisional
Probab=55.09 E-value=97 Score=36.32 Aligned_cols=141 Identities=17% Similarity=0.261 Sum_probs=76.5
Q ss_pred CCcccceeeeCCCCCC-CChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHH
Q 044344 177 PLFAHRGLILDTSRNY-YGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVE 255 (587)
Q Consensus 177 P~f~~RG~mlD~aR~f-~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~ 255 (587)
|++.+ |+++-.+... ++-+.+.++++.|...++-.=.+|+.. .|--.. .+...+ |.+ ..|. |.+++++
T Consensus 264 P~Wal-G~w~s~~~~~~~~e~~v~~~~~~~r~~~iP~d~i~lD~--~w~~~~-~~~~f~----wd~-~~FP--dp~~mi~ 332 (665)
T PRK10658 264 PAWSF-GLWLTTSFTTNYDEATVNSFIDGMAERDLPLHVFHFDC--FWMKEF-QWCDFE----WDP-RTFP--DPEGMLK 332 (665)
T ss_pred chhhh-heeeecccccCCCHHHHHHHHHHHHHcCCCceEEEEch--hhhcCC-ceeeeE----ECh-hhCC--CHHHHHH
Confidence 55665 7776553322 467889999999999998865555532 221000 011111 111 1122 5678999
Q ss_pred HHHhcCCEEEecCCCCCchhhHHHhCchhhhhcccCc--CCCCCcccccccCCCCCCcCCCCChhHHHHHHHHHHHHHHh
Q 044344 256 FGLTHGVRVLPEIDSPGHTGSWAEAYPEIVTCANKFW--WPAESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNL 333 (587)
Q Consensus 256 yA~~rgI~VIPEID~PGH~~a~~~~~p~l~~c~~~~~--~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~Ev~~l 333 (587)
.-+++||+|+.-|+ |+=.. -...|.|... ..+. -+++..|.... -......+|.+||++.+...+.++++.++
T Consensus 333 ~L~~~G~k~~~~i~-P~i~~-~s~~f~e~~~--~gy~vk~~~G~~~~~~~-W~g~~~~~Dftnp~ar~W~~~~~~~l~d~ 407 (665)
T PRK10658 333 RLKAKGLKICVWIN-PYIAQ-KSPLFKEGKE--KGYLLKRPDGSVWQWDK-WQPGMAIVDFTNPDACKWYADKLKGLLDM 407 (665)
T ss_pred HHHHCCCEEEEecc-CCcCC-CchHHHHHHH--CCeEEECCCCCEeeeee-cCCCceeecCCCHHHHHHHHHHHHHHHhc
Confidence 99999999998775 22110 0001111110 0000 02222221100 01234579999999999999999988764
No 87
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=55.06 E-value=83 Score=33.43 Aligned_cols=93 Identities=20% Similarity=0.256 Sum_probs=66.7
Q ss_pred eEEEEecChhhhhHHHHHHHHhhcCCCCeeeeeceEEEccCCcccceeeeC-----------------------------
Q 044344 137 IANLTAHTVWGAMRGLETFSQLVWGKPNLLVASGLYVWDSPLFAHRGLILD----------------------------- 187 (587)
Q Consensus 137 ~i~I~a~~~~G~~~g~~Tl~Ql~~~~~~~~~p~~~~I~D~P~f~~RG~mlD----------------------------- 187 (587)
.++|-|...-++++=+.-|.|-+..-+. +.+. ++.-+|.|||
T Consensus 162 EaHlDGqGEP~lYP~l~~lVqalk~~~~------v~vV---SmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~ 232 (414)
T COG2100 162 EAHLDGQGEPLLYPHLVDLVQALKEHKG------VEVV---SMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKM 232 (414)
T ss_pred EEEecCCCCCccchhHHHHHHHHhcCCC------ceEE---EEeeCceeccHHHHHHHHHhCCceEEeecccCCHHHHHH
Confidence 5788899999999999999998874321 1111 1222333332
Q ss_pred -CCCCCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcC
Q 044344 188 -TSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHG 261 (587)
Q Consensus 188 -~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rg 261 (587)
.+|+.+.++-++++++.++..|+++|---+ -+| -|..+|+..||++|++.|
T Consensus 233 L~G~~dYdv~kvle~aE~i~~a~idvlIaPv--------~lP---------------G~ND~E~~~iIe~A~~iG 284 (414)
T COG2100 233 LAGRKDYDVKKVLEVAEYIANAGIDVLIAPV--------WLP---------------GVNDDEMPKIIEWAREIG 284 (414)
T ss_pred hcCccccCHHHHHHHHHHHHhCCCCEEEeee--------ecC---------------CcChHHHHHHHHHHHHhC
Confidence 468889999999999999999999886332 111 157899999999999998
No 88
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=55.05 E-value=25 Score=37.08 Aligned_cols=24 Identities=13% Similarity=0.201 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..|+.+++++|++.|+++|+-||-
T Consensus 151 ~~~~~~~~~~l~~~a~~~~~~ii~ 174 (350)
T TIGR03537 151 ATAPRSYLKETIAMCREHGIILCS 174 (350)
T ss_pred cccCHHHHHHHHHHHHHcCcEEEE
Confidence 469999999999999999997774
No 89
>PRK08068 transaminase; Reviewed
Probab=54.53 E-value=28 Score=37.30 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..||++++++|++.|+++++-||-
T Consensus 182 ~~~s~~~~~~l~~la~~~~~~ii~ 205 (389)
T PRK08068 182 AVATKAFFEETVAFAKKHNIGVVH 205 (389)
T ss_pred CcCCHHHHHHHHHHHHHcCeEEEE
Confidence 479999999999999999998773
No 90
>PRK09265 aminotransferase AlaT; Validated
Probab=53.59 E-value=60 Score=35.01 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..++.+++++|++.|+++|+-||-
T Consensus 183 ~~~~~~~~~~i~~~a~~~~~~ii~ 206 (404)
T PRK09265 183 AVYSKELLEEIVEIARQHNLIIFA 206 (404)
T ss_pred cCCCHHHHHHHHHHHHHCCCEEEE
Confidence 468999999999999999998874
No 91
>PLN02368 alanine transaminase
Probab=53.21 E-value=35 Score=37.27 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..||++++++|++.|+++++-||-
T Consensus 225 ~v~s~e~l~~l~~~a~~~~~~II~ 248 (407)
T PLN02368 225 QCLSEANLREILKFCYQERLVLLG 248 (407)
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEE
Confidence 479999999999999999998885
No 92
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=52.90 E-value=49 Score=36.39 Aligned_cols=86 Identities=21% Similarity=0.327 Sum_probs=57.4
Q ss_pred ChHHHHHHHHHHHhCCCcEEEEEeeCCCCC---CccCCC----CCccccCCCCCCCCCCCHHHHHHHHHHHH-hcCCEEE
Q 044344 194 GVDDILRTIKTMSFNKMNVFHWHITDSHSF---PLVLPS----EPDLAAKGSYGHDMQYSPDDVKKIVEFGL-THGVRVL 265 (587)
Q Consensus 194 ~~~~lk~~Id~ma~~KlN~lh~HltDdq~f---r~e~~~----~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~-~rgI~VI 265 (587)
|.+...+.++..+..++|.+|+-.--.-|- +|.+.. -|.+. .+..-++.++++++|.-++ ++||-.+
T Consensus 20 ~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~-----~~~~~~~~~~v~~~v~~~~~~~~ll~~ 94 (423)
T PF14701_consen 20 PFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFF-----PPGKESTFEDVKEFVKEAEKKYGLLSM 94 (423)
T ss_pred CHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhc-----CCCccccHHHHHHHHHHHHHHcCceEE
Confidence 456778888999999999999654211111 111111 11111 1234578899999999985 8999999
Q ss_pred ecCCCCCchh---hHHHhCchhh
Q 044344 266 PEIDSPGHTG---SWAEAYPEIV 285 (587)
Q Consensus 266 PEID~PGH~~---a~~~~~p~l~ 285 (587)
-.| +.-|+. .|+..|||-+
T Consensus 95 ~Dv-V~NHtA~nS~Wl~eHPEag 116 (423)
T PF14701_consen 95 TDV-VLNHTANNSPWLREHPEAG 116 (423)
T ss_pred EEE-eeccCcCCChHHHhCcccc
Confidence 887 666764 4999999863
No 93
>PRK05942 aspartate aminotransferase; Provisional
Probab=52.20 E-value=45 Score=35.85 Aligned_cols=24 Identities=13% Similarity=0.155 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..+|.+++++|++.|+++++-||=
T Consensus 185 ~~~s~~~~~~i~~~a~~~~~~iI~ 208 (394)
T PRK05942 185 ATAPREFFEEIVAFARKYEIMLVH 208 (394)
T ss_pred CcCCHHHHHHHHHHHHHcCeEEEE
Confidence 469999999999999999998873
No 94
>PRK08960 hypothetical protein; Provisional
Probab=51.77 E-value=36 Score=36.44 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..+|.+++++|++.|+++|+-||-
T Consensus 180 ~~~~~~~~~~l~~~~~~~~~~li~ 203 (387)
T PRK08960 180 TLLSRDELAALSQALRARGGHLVV 203 (387)
T ss_pred cCcCHHHHHHHHHHHHHcCCEEEE
Confidence 468999999999999999997774
No 95
>PRK07324 transaminase; Validated
Probab=51.48 E-value=54 Score=35.07 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEec
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLPE 267 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIPE 267 (587)
..++++++++|++.|+++|+-||-.
T Consensus 168 ~~~~~~~l~~i~~~a~~~~~~ii~D 192 (373)
T PRK07324 168 ALMDRAYLEEIVEIARSVDAYVLSD 192 (373)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 4789999999999999999988853
No 96
>PRK06290 aspartate aminotransferase; Provisional
Probab=50.72 E-value=67 Score=34.99 Aligned_cols=23 Identities=13% Similarity=0.262 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVL 265 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VI 265 (587)
..||.+++++|++.|+++++-||
T Consensus 194 ~v~s~e~l~~l~~la~~~~~~iI 216 (410)
T PRK06290 194 AVATKEFYEEVVDFAKENNIIVV 216 (410)
T ss_pred cCCCHHHHHHHHHHHHHcCeEEE
Confidence 47999999999999999999776
No 97
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=50.22 E-value=67 Score=34.23 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVL 265 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VI 265 (587)
..||.+++++|++.|+++++-||
T Consensus 179 ~~~~~~~~~~i~~~a~~~~~~ii 201 (383)
T TIGR03540 179 AVAPLKFFKELVEFAKEYNIIVC 201 (383)
T ss_pred ccCCHHHHHHHHHHHHHcCEEEE
Confidence 47999999999999999999777
No 98
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=49.78 E-value=17 Score=35.22 Aligned_cols=121 Identities=18% Similarity=0.249 Sum_probs=72.6
Q ss_pred ChHHHHHHHHHHHhCCCcEEEEEeeCCCCCC---ccCCCCCccccCCC--------------CCCCCCCCHHHHHHHHHH
Q 044344 194 GVDDILRTIKTMSFNKMNVFHWHITDSHSFP---LVLPSEPDLAAKGS--------------YGHDMQYSPDDVKKIVEF 256 (587)
Q Consensus 194 ~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr---~e~~~~P~Lt~~ga--------------~~~~~~YT~~ei~eiv~y 256 (587)
+.+.++++++.+...++..+++.+++..... .-.+.||++. .|+ .+.+..-+.....+++++
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~-iGag~v~~~~~~~~a~~~Ga~~i~~p~~~~~~~~~ 92 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEAL-IGAGTVLTPEQADAAIAAGAQFIVSPGLDPEVVKA 92 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCE-EEEEeCCCHHHHHHHHHcCCCEEEcCCCCHHHHHH
Confidence 4788888999999999999999887653221 1113355431 111 011122233334679999
Q ss_pred HHhcCCEEEecCCCCCchhhHHHhCchhhhhcccCcCCCCCcccccccCCCCCCcCCCCChhHHHHHHHHHHHHHHhCC-
Q 044344 257 GLTHGVRVLPEIDSPGHTGSWAEAYPEIVTCANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNLFP- 335 (587)
Q Consensus 257 A~~rgI~VIPEID~PGH~~a~~~~~p~l~~c~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~Ev~~lF~- 335 (587)
++.+|+.+||++.+|.++......=.++. .+.|..+...+ .++++...||
T Consensus 93 ~~~~~~~~i~gv~t~~e~~~A~~~Gad~i-------------------------~~~p~~~~g~~----~~~~l~~~~~~ 143 (190)
T cd00452 93 ANRAGIPLLPGVATPTEIMQALELGADIV-------------------------KLFPAEAVGPA----YIKALKGPFPQ 143 (190)
T ss_pred HHHcCCcEECCcCCHHHHHHHHHCCCCEE-------------------------EEcCCcccCHH----HHHHHHhhCCC
Confidence 99999999999998877654443211111 12333333333 4555667776
Q ss_pred CCeeeeccC
Q 044344 336 EAFYHAGAD 344 (587)
Q Consensus 336 ~~~iHIGgD 344 (587)
-+.+=+||=
T Consensus 144 ~p~~a~GGI 152 (190)
T cd00452 144 VRFMPTGGV 152 (190)
T ss_pred CeEEEeCCC
Confidence 578888874
No 99
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=48.91 E-value=3.6e+02 Score=28.69 Aligned_cols=130 Identities=16% Similarity=0.195 Sum_probs=70.6
Q ss_pred CCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecCCC
Q 044344 191 NYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEIDS 270 (587)
Q Consensus 191 ~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~ 270 (587)
++.+-+.++++++.+...++..=.+++..+ |- +.+-..+ | ....|..-..+++|+.-+++||+|++-|+
T Consensus 19 ~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~--~~---~~~~~f~----~-d~~~FPdp~~~~mi~~L~~~G~k~~~~i~- 87 (339)
T cd06602 19 GYKNVDEVKEVVENMRAAGIPLDVQWNDID--YM---DRRRDFT----L-DPVRFPGLKMPEFVDELHANGQHYVPILD- 87 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcceEEECcc--cc---cCcccee----c-ccccCCCccHHHHHHHHHHCCCEEEEEEe-
Confidence 356889999999999999998655566322 21 1110110 1 11223333348899999999999999875
Q ss_pred CCchhh-HHHhCchhhhhcc-cCcC--CCCCcccccccCCC-CCCcCCCCChhHHHHHHHHHHHHHHh
Q 044344 271 PGHTGS-WAEAYPEIVTCAN-KFWW--PAESNWTNRLASEP-GTGHLNPLNPKTYKILKNVINDIVNL 333 (587)
Q Consensus 271 PGH~~a-~~~~~p~l~~c~~-~~~~--~~~~~~~~~~~~~~-~~~~L~~~~~~t~~fl~~v~~Ev~~l 333 (587)
|+-... -...|+.+..+.. .+.. .++..+. ....+ ....+|.+||++.+...+.++++.+-
T Consensus 88 P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~--~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~ 153 (339)
T cd06602 88 PAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYI--GKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQ 153 (339)
T ss_pred CccccCcCCCCCHHHHHHHHCCeEEECCCCCEEE--EEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhc
Confidence 443211 0011222211110 0000 0110000 00011 12458999999999999999887754
No 100
>PLN02672 methionine S-methyltransferase
Probab=48.44 E-value=53 Score=40.48 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..||.+++++|++.|+++++.||-
T Consensus 844 ~v~S~eeLe~Llela~k~di~VIs 867 (1082)
T PLN02672 844 LLYSNSEIEEILSVCAKYGARVII 867 (1082)
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEE
Confidence 479999999999999999998874
No 101
>PLN02231 alanine transaminase
Probab=48.06 E-value=83 Score=35.78 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..||++++++|++.|+++++-||-
T Consensus 286 ~vls~e~l~~Iv~~a~~~~l~lI~ 309 (534)
T PLN02231 286 QVLAEENQRDIVEFCKQEGLVLLA 309 (534)
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEE
Confidence 479999999999999999998875
No 102
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=47.73 E-value=26 Score=35.91 Aligned_cols=74 Identities=14% Similarity=0.207 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHHhcCCEEEecCCCCCchhhHHHhCchhhhhcccCcCCCCCcccccccCCCCCCcCCCCChhHHHHH
Q 044344 244 QYSPDDVKKIVEFGLTHGVRVLPEIDSPGHTGSWAEAYPEIVTCANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKIL 323 (587)
Q Consensus 244 ~YT~~ei~eiv~yA~~rgI~VIPEID~PGH~~a~~~~~p~l~~c~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl 323 (587)
.++++++++|+++|+++|++++-|+..--+..-+++.-+.+. -+|-.|=.|++.-
T Consensus 139 ~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iI-------------------------GINnRdL~tf~vd 193 (254)
T COG0134 139 ALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKII-------------------------GINNRDLTTLEVD 193 (254)
T ss_pred hcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEE-------------------------EEeCCCcchheec
Confidence 689999999999999999999999954444433333222221 1344455666666
Q ss_pred HHHHHHHHHhCCCCeeeec
Q 044344 324 KNVINDIVNLFPEAFYHAG 342 (587)
Q Consensus 324 ~~v~~Ev~~lF~~~~iHIG 342 (587)
-+...++++..|...+=|.
T Consensus 194 l~~t~~la~~~p~~~~~Is 212 (254)
T COG0134 194 LETTEKLAPLIPKDVILIS 212 (254)
T ss_pred HHHHHHHHhhCCCCcEEEe
Confidence 6678889999998755554
No 103
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=47.64 E-value=60 Score=32.29 Aligned_cols=69 Identities=14% Similarity=0.093 Sum_probs=43.0
Q ss_pred CChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEE
Q 044344 193 YGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVL 265 (587)
Q Consensus 193 ~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VI 265 (587)
-+.+.|+++.+.++.+... ++||.-- .++-..+|-.|...=.......-++++++++.+.++++|+.++
T Consensus 142 d~~e~i~~ia~~l~~l~~~--~~~llpy--h~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~ 210 (213)
T PRK10076 142 LSRENMQQALDVLIPLGIK--QIHLLPF--HQYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVT 210 (213)
T ss_pred CCHHHHHHHHHHHHHcCCc--eEEEecC--CccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEE
Confidence 3568899999999887554 5665321 1222223322221101112235689999999999999999986
No 104
>PRK05839 hypothetical protein; Provisional
Probab=47.51 E-value=1.3e+02 Score=32.08 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 242 DMQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 242 ~~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
+..|+.+++++|++.|+++||-||-
T Consensus 169 G~~~s~~~l~~i~~~~~~~~~~ii~ 193 (374)
T PRK05839 169 GRTLSLEELIEWVKLALKHDFILIN 193 (374)
T ss_pred CcccCHHHHHHHHHHHHHcCCEEEe
Confidence 3579999999999999999998884
No 105
>PRK06108 aspartate aminotransferase; Provisional
Probab=47.14 E-value=60 Score=34.44 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..+|.+++++|++.|+++|+-||-
T Consensus 173 ~~~~~~~~~~l~~~~~~~~~~li~ 196 (382)
T PRK06108 173 WTASRDDLRAILAHCRRHGLWIVA 196 (382)
T ss_pred cccCHHHHHHHHHHHHHCCcEEEE
Confidence 468999999999999999998873
No 106
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=47.06 E-value=1.4e+02 Score=33.14 Aligned_cols=63 Identities=17% Similarity=0.297 Sum_probs=39.7
Q ss_pred CCCCCC-CChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEE
Q 044344 187 DTSRNY-YGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVL 265 (587)
Q Consensus 187 D~aR~f-~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VI 265 (587)
|...+| +.++.+++.++....-+.++=-+.++. |..| . +..||++++++|++.|++++|-||
T Consensus 175 ~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~n--------P~NP----t-----G~~~s~e~l~~l~~~~~~~~i~lI 237 (447)
T PLN02607 175 DSSNNFQVTPQALEAAYQEAEAANIRVRGVLITN--------PSNP----L-----GATVQRSVLEDILDFVVRKNIHLV 237 (447)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeC--------CCCC----c-----CcccCHHHHHHHHHHHHHCCCEEE
Confidence 434455 466777777766544344431122321 2222 1 247999999999999999999988
Q ss_pred e
Q 044344 266 P 266 (587)
Q Consensus 266 P 266 (587)
-
T Consensus 238 ~ 238 (447)
T PLN02607 238 S 238 (447)
T ss_pred E
Confidence 4
No 107
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=46.94 E-value=54 Score=31.11 Aligned_cols=63 Identities=14% Similarity=0.214 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecC
Q 044344 195 VDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEI 268 (587)
Q Consensus 195 ~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEI 268 (587)
++.+++.|+.++.++...+.+|... |+.. +....... -....+-+++|.++|+++||+|..|-
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~---~~~~----~~~~~~~~----~~~~~~~l~~l~~~a~~~gv~i~lE~ 132 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGR---YPSG----PEDDTEEN----WERLAENLRELAEIAEEYGVRIALEN 132 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTT---ESSS----TTSSHHHH----HHHHHHHHHHHHHHHHHHTSEEEEE-
T ss_pred HHHHHHHHHHHHHhCCCceeecCcc---cccc----cCCCHHHH----HHHHHHHHHHHHhhhhhhcceEEEec
Confidence 7899999999999999999999742 1100 00000000 11245678999999999999999994
No 108
>PTZ00377 alanine aminotransferase; Provisional
Probab=46.51 E-value=94 Score=34.59 Aligned_cols=24 Identities=17% Similarity=0.422 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..||.+++++|++.|+++++-||=
T Consensus 233 ~~~s~e~~~~i~~~a~~~~~~iI~ 256 (481)
T PTZ00377 233 QVLTRDVMEEIIKFCYEKGIVLMA 256 (481)
T ss_pred cCCCHHHHHHHHHHHHHCCCEEEE
Confidence 479999999999999999997774
No 109
>PRK09275 aspartate aminotransferase; Provisional
Probab=46.31 E-value=74 Score=36.18 Aligned_cols=24 Identities=13% Similarity=0.284 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHHHHHHhc--CCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTH--GVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~r--gI~VIP 266 (587)
..||++++++|++.|+++ ++-||-
T Consensus 256 ~v~s~e~l~~I~~ia~~~~~~l~II~ 281 (527)
T PRK09275 256 VAMSDESLEKIADIVNEKRPDLMIIT 281 (527)
T ss_pred CCCCHHHHHHHHHHHHhcCCCcEEEE
Confidence 479999999999999654 787764
No 110
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=44.92 E-value=58 Score=32.44 Aligned_cols=81 Identities=7% Similarity=0.061 Sum_probs=59.4
Q ss_pred ChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCc---cCCCC---CccccCCCCCCCCCCCHHHHH----------------
Q 044344 194 GVDDILRTIKTMSFNKMNVFHWHITDSHSFPL---VLPSE---PDLAAKGSYGHDMQYSPDDVK---------------- 251 (587)
Q Consensus 194 ~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~---e~~~~---P~Lt~~ga~~~~~~YT~~ei~---------------- 251 (587)
+.+...++++.|..-++.++.+-++...+... -.+.| |++. .|+ +...|.+|++
T Consensus 23 ~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~-vGa---GTV~~~~~~~~a~~aGA~FivsP~~~ 98 (213)
T PRK06552 23 SKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVL-IGA---GTVLDAVTARLAILAGAQFIVSPSFN 98 (213)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeE-Eee---eeCCCHHHHHHHHHcCCCEEECCCCC
Confidence 78999999999999999999998875543321 01234 3443 344 3567777765
Q ss_pred -HHHHHHHhcCCEEEecCCCCCchhhHH
Q 044344 252 -KIVEFGLTHGVRVLPEIDSPGHTGSWA 278 (587)
Q Consensus 252 -eiv~yA~~rgI~VIPEID~PGH~~a~~ 278 (587)
+++++|+++||-+||-.-+|.-.....
T Consensus 99 ~~v~~~~~~~~i~~iPG~~T~~E~~~A~ 126 (213)
T PRK06552 99 RETAKICNLYQIPYLPGCMTVTEIVTAL 126 (213)
T ss_pred HHHHHHHHHcCCCEECCcCCHHHHHHHH
Confidence 788999999999999998886665544
No 111
>PRK08363 alanine aminotransferase; Validated
Probab=43.83 E-value=61 Score=34.85 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..++.+++++|++.|+++|+-||=
T Consensus 181 ~~~~~~~~~~l~~~a~~~~~~li~ 204 (398)
T PRK08363 181 ALYEKKTLKEILDIAGEHDLPVIS 204 (398)
T ss_pred cCcCHHHHHHHHHHHHHcCeEEEE
Confidence 468999999999999999987773
No 112
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=43.48 E-value=45 Score=37.11 Aligned_cols=24 Identities=8% Similarity=0.303 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..||.+++++|++.|+++++-||=
T Consensus 206 ~~~s~e~l~~ll~~a~~~~~~iI~ 229 (468)
T PLN02450 206 TTTTRTELNLLVDFITAKNIHLIS 229 (468)
T ss_pred cccCHHHHHHHHHHHHHCCcEEEE
Confidence 479999999999999999998884
No 113
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=43.39 E-value=74 Score=40.11 Aligned_cols=83 Identities=18% Similarity=0.199 Sum_probs=56.6
Q ss_pred ChHHHHHHHHHHHhCCCcEEEEEeeCCCC---CCccCCCCCccccCCCCCCCCC----CCHHHHHHHHHHHHhc-CCEEE
Q 044344 194 GVDDILRTIKTMSFNKMNVFHWHITDSHS---FPLVLPSEPDLAAKGSYGHDMQ----YSPDDVKKIVEFGLTH-GVRVL 265 (587)
Q Consensus 194 ~~~~lk~~Id~ma~~KlN~lh~HltDdq~---fr~e~~~~P~Lt~~ga~~~~~~----YT~~ei~eiv~yA~~r-gI~VI 265 (587)
+.+...+-++.++..++|.+|+-.--..| =+|.+..|=++ ...+ -|.+|++++|+-|.++ ||.+|
T Consensus 130 ~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~i-------dP~~~~~~~~~~d~~~lV~~~h~~~Gm~~i 202 (1464)
T TIGR01531 130 PLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQL-------NQHFKSQKDGKNDVQALVEKLHRDWNVLSI 202 (1464)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhc-------ChhhcccCCcHHHHHHHHHHHHHhcCCEEE
Confidence 34888899999999999999975321111 11111111000 0112 3789999999999996 99999
Q ss_pred ecCCCCCchh---hHHHhCchh
Q 044344 266 PEIDSPGHTG---SWAEAYPEI 284 (587)
Q Consensus 266 PEID~PGH~~---a~~~~~p~l 284 (587)
-.+ +..|+. .|+..|||-
T Consensus 203 lDv-V~NHTa~ds~Wl~eHPEa 223 (1464)
T TIGR01531 203 TDI-VFNHTANNSPWLLEHPEA 223 (1464)
T ss_pred EEe-eecccccCCHHHHhChHh
Confidence 987 778875 488888884
No 114
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=43.32 E-value=59 Score=35.04 Aligned_cols=54 Identities=13% Similarity=0.242 Sum_probs=38.8
Q ss_pred ChHHHHHHHHHHHhCCCcEEE--EEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecC
Q 044344 194 GVDDILRTIKTMSFNKMNVFH--WHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEI 268 (587)
Q Consensus 194 ~~~~lk~~Id~ma~~KlN~lh--~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEI 268 (587)
+.+..+++|+.|+.+++..+- +|+-++ . ..-..+++++|.++|+++|++||..|
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~-------------~--------~~~~~~~~~~l~~~a~~~~~~v~~Di 67 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPED-------------D--------PEDYLERLKELLKLAKELGMEVIADI 67 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE------------------------------HHHHHHHHHHHHHHCT-EEEEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCC-------------C--------HHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 688999999999999998654 343221 0 01246999999999999999999988
No 115
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=42.65 E-value=62 Score=36.40 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..|+.+++++|++.|+++++-||-
T Consensus 296 ~v~~~~~l~~i~~~a~~~~~~ii~ 319 (517)
T PRK13355 296 ALYPREVLQQIVDIAREHQLIIFS 319 (517)
T ss_pred cCcCHHHHHHHHHHHHHcCcEEEE
Confidence 479999999999999999997774
No 116
>PRK08636 aspartate aminotransferase; Provisional
Probab=42.19 E-value=1.8e+02 Score=31.33 Aligned_cols=23 Identities=4% Similarity=0.102 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEE
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVL 265 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VI 265 (587)
..||.+++++|++.|+++++-||
T Consensus 190 ~~~s~~~~~~l~~~a~~~~~~II 212 (403)
T PRK08636 190 ATVEKSFYERLVALAKKERFYII 212 (403)
T ss_pred ccCCHHHHHHHHHHHHHcCcEEE
Confidence 47999999999999999999888
No 117
>PTZ00376 aspartate aminotransferase; Provisional
Probab=41.89 E-value=1.1e+02 Score=32.93 Aligned_cols=24 Identities=8% Similarity=0.054 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..||.+++++|++.|+++++-||-
T Consensus 191 ~~~s~~~~~~l~~~a~~~~~~ii~ 214 (404)
T PTZ00376 191 VDPTEEQWKEIADVMKRKNLIPFF 214 (404)
T ss_pred CCCCHHHHHHHHHHHHhCCcEEEE
Confidence 479999999999999999997774
No 118
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=41.79 E-value=30 Score=35.36 Aligned_cols=74 Identities=19% Similarity=0.412 Sum_probs=48.1
Q ss_pred CCCHHHHHHHHHHHHhcCCEEEecCCCCCchhhHHHhCchhhhhcccCcCCCCCcccccccCCCCCCcCCCCChhHHHHH
Q 044344 244 QYSPDDVKKIVEFGLTHGVRVLPEIDSPGHTGSWAEAYPEIVTCANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKIL 323 (587)
Q Consensus 244 ~YT~~ei~eiv~yA~~rgI~VIPEID~PGH~~a~~~~~p~l~~c~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl 323 (587)
.++++++++++++|.+.|++++-|+-...-....+..-+++. .+|-.|-.|++.-
T Consensus 134 ~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~ii-------------------------GINnRdL~t~~vd 188 (247)
T PRK13957 134 ILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEII-------------------------GINTRDLDTFQIH 188 (247)
T ss_pred hCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEE-------------------------EEeCCCCccceEC
Confidence 578999999999999999999999944443333333333321 1333444555555
Q ss_pred HHHHHHHHHhCCCCeeeec
Q 044344 324 KNVINDIVNLFPEAFYHAG 342 (587)
Q Consensus 324 ~~v~~Ev~~lF~~~~iHIG 342 (587)
-+...++.+..|...+=|.
T Consensus 189 ~~~~~~L~~~ip~~~~~Is 207 (247)
T PRK13957 189 QNLVEEVAAFLPPNIVKVG 207 (247)
T ss_pred HHHHHHHHhhCCCCcEEEE
Confidence 5566778888886544443
No 119
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=41.04 E-value=72 Score=34.44 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..++.+++++|++.|+++|+-||=
T Consensus 184 ~~~~~~~~~~i~~~a~~~~~~ii~ 207 (403)
T TIGR01265 184 SVFSRDHLQKIAEVARKLGIPIIA 207 (403)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEE
Confidence 468999999999999999998874
No 120
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=40.55 E-value=1.1e+02 Score=32.02 Aligned_cols=60 Identities=13% Similarity=0.196 Sum_probs=37.9
Q ss_pred CCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 191 NYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 191 ~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..+.++.|++.++....+.-+.=-+-++-. ++ ...+..||.+||++|.++|+++||.|.-
T Consensus 104 G~l~~~~l~~~~~~~~~h~~~~~~v~le~t-------------~~---~~GG~~~s~~el~ai~~~a~~~gl~lhm 163 (290)
T PF01212_consen 104 GKLTPEDLEAAIEEHGAHHPQPAVVSLENT-------------TE---LAGGTVYSLEELRAISELAREHGLPLHM 163 (290)
T ss_dssp TBB-HHHHHHHHHHHTGTSGGEEEEEEESS-------------BT---TTTSB---HHHHHHHHHHHHHHT-EEEE
T ss_pred CCCCHHHHHHHhhhccccCCCccEEEEEec-------------Cc---CCCCeeCCHHHHHHHHHHHHhCceEEEE
Confidence 567999999999987774444433334311 11 1123589999999999999999988853
No 121
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=40.45 E-value=52 Score=34.46 Aligned_cols=64 Identities=17% Similarity=0.056 Sum_probs=47.1
Q ss_pred hhhHHHHHHHHhhcC---CCCeeeeeceEEEccCCcccceeeeCCC-CCCCChHHHHHHHHHHHhCCCcEEE
Q 044344 147 GAMRGLETFSQLVWG---KPNLLVASGLYVWDSPLFAHRGLILDTS-RNYYGVDDILRTIKTMSFNKMNVFH 214 (587)
Q Consensus 147 G~~~g~~Tl~Ql~~~---~~~~~~p~~~~I~D~P~f~~RG~mlD~a-R~f~~~~~lk~~Id~ma~~KlN~lh 214 (587)
|.++-+++|.+++.. .+-..+ -++++| .|+++|.--=.+ +.+++.+.++++++..+..+++++=
T Consensus 11 ~~~~~~~~lk~~id~ma~~k~N~l--~lhl~D--~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIP 78 (301)
T cd06565 11 NAVPKVSYLKKLLRLLALLGANGL--LLYYED--TFPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIP 78 (301)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEE--EEEEec--ceecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEe
Confidence 367778889988873 110123 367888 688888643223 7899999999999999999999853
No 122
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=40.44 E-value=1.4e+02 Score=35.19 Aligned_cols=121 Identities=18% Similarity=0.268 Sum_probs=69.8
Q ss_pred HHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCC---CCC--------CCCCC--------CHHHHHHHHHHHHhcCC
Q 044344 202 IKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKG---SYG--------HDMQY--------SPDDVKKIVEFGLTHGV 262 (587)
Q Consensus 202 Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~g---a~~--------~~~~Y--------T~~ei~eiv~yA~~rgI 262 (587)
|+.+..++++.+|+=..-+ | ...|.|.+.| -|+ +.+.| -..|+|++|+-..++||
T Consensus 206 i~yLk~LGvtaVeLLPV~~--~----~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI 279 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFD--F----YDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGI 279 (697)
T ss_pred HHHHHHhCCceEEEecceE--E----eccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCC
Confidence 8999999999888754321 1 1112221111 121 22223 23599999999999999
Q ss_pred EEEecCCCCCchhhHH-----HhCchhhhhcccCcCCCCCcccccccCCCCC-CcCCCCChhHHHHHHHHHHHHHHhC
Q 044344 263 RVLPEIDSPGHTGSWA-----EAYPEIVTCANKFWWPAESNWTNRLASEPGT-GHLNPLNPKTYKILKNVINDIVNLF 334 (587)
Q Consensus 263 ~VIPEID~PGH~~a~~-----~~~p~l~~c~~~~~~~~~~~~~~~~~~~~~~-~~L~~~~~~t~~fl~~v~~Ev~~lF 334 (587)
+||-.+ +.-|+..-- .....+. .+.|+.-+.. +. +.+..++ ++|+..+|-+.++|-+-+.=..+-+
T Consensus 280 ~VILDV-VfNHTae~~~~g~t~~f~~id--~~~Yyr~~~d--g~-~~N~TGcGNtln~~hpmvrk~ivDsLrYWv~e~ 351 (697)
T COG1523 280 EVILDV-VFNHTAEGNELGPTLSFRGID--PNYYYRLDPD--GY-YSNGTGCGNTLNTEHPMVRKLIVDSLRYWVEEY 351 (697)
T ss_pred EEEEEE-eccCcccccCcCcccccccCC--cCceEEECCC--CC-eecCCccCcccccCChHHHHHHHHHHHHHHHHh
Confidence 999988 788885311 1122221 1122221111 11 2222334 4899999999999888777665543
No 123
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=39.99 E-value=85 Score=33.69 Aligned_cols=59 Identities=10% Similarity=0.197 Sum_probs=42.3
Q ss_pred CCCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecCC
Q 044344 190 RNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEID 269 (587)
Q Consensus 190 R~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID 269 (587)
+..++.+.++++|+.+...+. ..++++- ++.+...|+.+|+++++++|+.+ .|.
T Consensus 43 ~~~~~~e~~~~ii~~~~~~g~--~~v~~~G----------------------GEPll~~~~~~il~~~~~~g~~~--~i~ 96 (378)
T PRK05301 43 GAELSTEEWIRVLREARALGA--LQLHFSG----------------------GEPLLRKDLEELVAHARELGLYT--NLI 96 (378)
T ss_pred cCCCCHHHHHHHHHHHHHcCC--cEEEEEC----------------------CccCCchhHHHHHHHHHHcCCcE--EEE
Confidence 456889999999999987764 4444432 23444577999999999999865 466
Q ss_pred CCCch
Q 044344 270 SPGHT 274 (587)
Q Consensus 270 ~PGH~ 274 (587)
|=|..
T Consensus 97 TNG~l 101 (378)
T PRK05301 97 TSGVG 101 (378)
T ss_pred CCCcc
Confidence 66653
No 124
>PRK12414 putative aminotransferase; Provisional
Probab=39.85 E-value=1.1e+02 Score=32.80 Aligned_cols=24 Identities=13% Similarity=0.365 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..||.+++++|++.|+++|+-||-
T Consensus 177 ~~~s~~~~~~i~~~a~~~~~~ii~ 200 (384)
T PRK12414 177 TVFSAADLARLAQLTRNTDIVILS 200 (384)
T ss_pred cCCCHHHHHHHHHHHHHCCeEEEE
Confidence 468999999999999999998874
No 125
>PRK07550 hypothetical protein; Provisional
Probab=39.53 E-value=71 Score=34.12 Aligned_cols=24 Identities=17% Similarity=0.558 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..++.+++++|++.|+++|+-||=
T Consensus 178 ~~~~~~~~~~i~~~~~~~~~~iI~ 201 (386)
T PRK07550 178 VVYPPELLHELYDLARRHGIALIL 201 (386)
T ss_pred cccCHHHHHHHHHHHHHcCeEEEE
Confidence 468999999999999999998763
No 126
>PRK07683 aminotransferase A; Validated
Probab=39.52 E-value=1.2e+02 Score=32.56 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..||.+++++|++.|+++|+-||-
T Consensus 176 ~~~s~~~~~~l~~~~~~~~~~ii~ 199 (387)
T PRK07683 176 VTLSKEELQDIADVLKDKNIFVLS 199 (387)
T ss_pred cCCCHHHHHHHHHHHHHcCeEEEE
Confidence 468999999999999999988874
No 127
>PRK09082 methionine aminotransferase; Validated
Probab=39.48 E-value=1.2e+02 Score=32.43 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..||.+++++|++.|++++|-||-
T Consensus 178 ~~~~~~~~~~i~~~a~~~~i~li~ 201 (386)
T PRK09082 178 TVWSAADMRALWQLIAGTDIYVLS 201 (386)
T ss_pred cCCCHHHHHHHHHHHHHCCEEEEE
Confidence 468999999999999999998884
No 128
>PLN00175 aminotransferase family protein; Provisional
Probab=38.72 E-value=99 Score=33.66 Aligned_cols=24 Identities=8% Similarity=0.230 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..||.+++++|++.|+++++-||-
T Consensus 202 ~~~s~~~l~~l~~~a~~~~~~ii~ 225 (413)
T PLN00175 202 KMFTREELELIASLCKENDVLAFT 225 (413)
T ss_pred cCCCHHHHHHHHHHHHHcCcEEEE
Confidence 479999999999999999997774
No 129
>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]
Probab=38.43 E-value=2.2e+02 Score=31.10 Aligned_cols=106 Identities=20% Similarity=0.371 Sum_probs=65.2
Q ss_pred CeEEEEecChhhhhHHHHHHHHhhcCCC--CeeeeeceEEEccCCcc---------cceeeeCCCCCC-CChHHHHHHHH
Q 044344 136 SIANLTAHTVWGAMRGLETFSQLVWGKP--NLLVASGLYVWDSPLFA---------HRGLILDTSRNY-YGVDDILRTIK 203 (587)
Q Consensus 136 ~~i~I~a~~~~G~~~g~~Tl~Ql~~~~~--~~~~p~~~~I~D~P~f~---------~RG~mlD~aR~f-~~~~~lk~~Id 203 (587)
+.|-+++ |+-.|+.++++|+-..+ +..+| |--||-|. .-...||-.+++ +.++.|++.++
T Consensus 137 ~dI~LT~----GAS~ai~~il~l~~~~~~~GvliP----iPQYPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~ 208 (475)
T KOG0258|consen 137 EDIFLTT----GASPAIRSILSLLIAGKKTGVLIP----IPQYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVD 208 (475)
T ss_pred HHeeecC----CCcHHHHHHHHHHhcCCCCceEee----cCCCchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHH
Confidence 3477776 66778889999887432 23444 33455443 112245666665 45667777776
Q ss_pred HHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEec
Q 044344 204 TMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPE 267 (587)
Q Consensus 204 ~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPE 267 (587)
... -.+|.=-+-+-. |+-| .+...|.+-|++|+.+|++.|+-++..
T Consensus 209 eA~-k~i~~r~lvvIN--------PGNP---------TGqvls~e~ie~i~~fa~~~~l~llaD 254 (475)
T KOG0258|consen 209 EAR-KGINPRALVVIN--------PGNP---------TGQVLSEENIEGIICFAAEEGLVLLAD 254 (475)
T ss_pred HHh-ccCCceEEEEEC--------CCCc---------cchhhcHHHHHHHHHHHHHcCeEEech
Confidence 655 444432222210 1222 135799999999999999999999864
No 130
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=38.13 E-value=2e+02 Score=29.90 Aligned_cols=130 Identities=17% Similarity=0.232 Sum_probs=71.2
Q ss_pred CCcccceeeeCCCC-CCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccC------CCCCccccCCCCCCCCCCCHHH
Q 044344 177 PLFAHRGLILDTSR-NYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVL------PSEPDLAAKGSYGHDMQYSPDD 249 (587)
Q Consensus 177 P~f~~RG~mlD~aR-~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~------~~~P~Lt~~ga~~~~~~YT~~e 249 (587)
|++.+ |++. +| .+.+-+.++++++.+...++-.=.+++-+| |...- ..+-..+ |.+ ..| -|
T Consensus 8 P~wal-G~~q--sr~~y~s~~ev~~v~~~~r~~~iP~D~i~lD~d--w~~~~~~~~~~~~~~~ft----~d~-~~F--Pd 75 (292)
T cd06595 8 PRYAF-GNWW--SRYWPYSDEEYLALMDRFKKHNIPLDVLVIDMD--WHVTDIPSKYGSGWTGYS----WNR-KLF--PD 75 (292)
T ss_pred chHHH-HhHh--hCCcCCCHHHHHHHHHHHHHhCCCccEEEEecc--cccccccccccCCcceeE----ECh-hcC--CC
Confidence 55665 7664 45 367889999999999999988555555222 22110 0010111 111 122 46
Q ss_pred HHHHHHHHHhcCCEEEecCCCCCchh-hHHHhCchhhhhcccCcCCCCCcccccccCCCCCCcCCCCChhHHHHH-HHHH
Q 044344 250 VKKIVEFGLTHGVRVLPEIDSPGHTG-SWAEAYPEIVTCANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKIL-KNVI 327 (587)
Q Consensus 250 i~eiv~yA~~rgI~VIPEID~PGH~~-a~~~~~p~l~~c~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl-~~v~ 327 (587)
.+++++.-++.|++||.-++ |+... .-...|.++..-... . . .......+|.+||++.+.. +.+.
T Consensus 76 p~~mi~~Lh~~G~k~v~~v~-P~~~~~~~~~~y~~~~~~~~~---~--------~-~~~~~~~~D~tnp~a~~~w~~~~~ 142 (292)
T cd06595 76 PEKLLQDLHDRGLKVTLNLH-PADGIRAHEDQYPEMAKALGV---D--------P-ATEGPILFDLTNPKFMDAYFDNVH 142 (292)
T ss_pred HHHHHHHHHHCCCEEEEEeC-CCcccCCCcHHHHHHHHhcCC---C--------c-ccCCeEEecCCCHHHHHHHHHHHH
Confidence 78999999999999998774 43211 111224443211000 0 0 0011236899999999854 4444
Q ss_pred HHHH
Q 044344 328 NDIV 331 (587)
Q Consensus 328 ~Ev~ 331 (587)
+.+.
T Consensus 143 ~~~~ 146 (292)
T cd06595 143 RPLE 146 (292)
T ss_pred HHHH
Confidence 4443
No 131
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=38.10 E-value=2.8e+02 Score=29.15 Aligned_cols=121 Identities=16% Similarity=0.242 Sum_probs=67.7
Q ss_pred CCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecCCCC
Q 044344 192 YYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEIDSP 271 (587)
Q Consensus 192 f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~P 271 (587)
+.+-+.++++++.+..+++-.=.+++-.+ | .+.+-..+ |.. ..| .|.+++++..+++||+|++-++ |
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~--~---~~~~~~f~----~d~-~~F--Pdp~~~i~~l~~~g~k~~~~~~-P 86 (317)
T cd06600 20 YYPQDKVVEVVDIMQKEGFPYDVVFLDIH--Y---MDSYRLFT----WDP-YRF--PEPKKLIDELHKRNVKLVTIVD-P 86 (317)
T ss_pred CCCHHHHHHHHHHHHHcCCCcceEEEChh--h---hCCCCcee----ech-hcC--CCHHHHHHHHHHCCCEEEEEee-c
Confidence 56789999999999999998666666322 1 01111111 211 122 2678999999999999997663 2
Q ss_pred Cch-----hhHHHhCc-hhhhhcccCcCCCCCcccccccCCCC-CCcCCCCChhHHHHHHHHHHHHHH
Q 044344 272 GHT-----GSWAEAYP-EIVTCANKFWWPAESNWTNRLASEPG-TGHLNPLNPKTYKILKNVINDIVN 332 (587)
Q Consensus 272 GH~-----~a~~~~~p-~l~~c~~~~~~~~~~~~~~~~~~~~~-~~~L~~~~~~t~~fl~~v~~Ev~~ 332 (587)
+-. ..+..+.. .+ .|.. +++.++. ...-++ ...+|.+||++.++..+.++++..
T Consensus 87 ~i~~~~~~~~~~~~~~~~~-~v~~----~~g~~~~--~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~ 147 (317)
T cd06600 87 GIRVDQNYSPFLSGMDKGK-FCEI----ESGELFV--GKMWPGTTVYPDFTNPDTREWWAGLFSEWLN 147 (317)
T ss_pred cccCCCCChHHHHHHHCCE-EEEC----CCCCeEE--EeecCCCccccCCCChHHHHHHHHHHHHHhh
Confidence 211 11111110 00 0110 1111000 000111 235899999999999999998763
No 132
>PRK06207 aspartate aminotransferase; Provisional
Probab=37.70 E-value=1.6e+02 Score=31.81 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..+|.+++++|++.|+++++-||-
T Consensus 193 ~~~s~e~l~~l~~~a~~~~~~iI~ 216 (405)
T PRK06207 193 VVYSAEEIAQIAALARRYGATVIV 216 (405)
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEE
Confidence 469999999999999999998774
No 133
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=37.67 E-value=1.1e+02 Score=31.31 Aligned_cols=46 Identities=13% Similarity=0.287 Sum_probs=37.7
Q ss_pred HHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecCCCC
Q 044344 201 TIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEIDSP 271 (587)
Q Consensus 201 ~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~P 271 (587)
+|+.....+.+.+++-.++ ++.+++++++++|+++|++++-|+...
T Consensus 125 qi~~a~~~GAD~VlLi~~~-------------------------l~~~~l~~li~~a~~lGl~~lvevh~~ 170 (260)
T PRK00278 125 QIYEARAAGADAILLIVAA-------------------------LDDEQLKELLDYAHSLGLDVLVEVHDE 170 (260)
T ss_pred HHHHHHHcCCCEEEEEecc-------------------------CCHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 5888888888888876432 356899999999999999999998444
No 134
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=37.43 E-value=24 Score=39.83 Aligned_cols=44 Identities=20% Similarity=0.408 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHhcCCEEEe----------------cCCCCCchhhHHHhCchhhhhcc
Q 044344 246 SPDDVKKIVEFGLTHGVRVLP----------------EIDSPGHTGSWAEAYPEIVTCAN 289 (587)
Q Consensus 246 T~~ei~eiv~yA~~rgI~VIP----------------EID~PGH~~a~~~~~p~l~~c~~ 289 (587)
-++++-+=++.-++|||+|-- -||||||+..-..--..|..|.+
T Consensus 92 ~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~EVsRslaac~G 151 (650)
T KOG0462|consen 92 GQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGEVSRSLAACDG 151 (650)
T ss_pred chhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccceehehhhhcCc
Confidence 467888888889999999854 49999999754333334555654
No 135
>TIGR01866 cas_Csn2 CRISPR-associated protein, Csn2 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.
Probab=36.53 E-value=81 Score=31.55 Aligned_cols=65 Identities=12% Similarity=0.147 Sum_probs=53.2
Q ss_pred cccceeeeCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHH
Q 044344 179 FAHRGLILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGL 258 (587)
Q Consensus 179 f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~ 258 (587)
|..=|+++|+...- +.+.+.++++......-+.+-.-. .. +.++|++|+.++.+|+.
T Consensus 132 ~Ka~gik~e~~~~~-~~eki~~~lki~~~l~~kki~ifv-----------------Nl-----~~YLt~eei~el~~~i~ 188 (216)
T TIGR01866 132 IKALGIKFETQSDT-LLEKCLEILQIFKELTKKKLFIFI-----------------NS-----GAFLTKDELAELQKFIS 188 (216)
T ss_pred HHhcCeeeeeccCc-HHHHHHHHHHHHHHHhcCcEEEEE-----------------cH-----HHhCCHHHHHHHHHHHH
Confidence 67889999999886 889999999988888777665433 11 24689999999999999
Q ss_pred hcCCEEEe
Q 044344 259 THGVRVLP 266 (587)
Q Consensus 259 ~rgI~VIP 266 (587)
...+.|+-
T Consensus 189 ~~~~~vll 196 (216)
T TIGR01866 189 YTKLTVLF 196 (216)
T ss_pred HhcccEEE
Confidence 99999873
No 136
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=36.41 E-value=1.4e+02 Score=34.02 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHHHhc--CCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTH--GVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~r--gI~VIP 266 (587)
..||++++++|++.|+++ ++-||-
T Consensus 255 ~vls~e~l~~I~~ia~~~~~~l~II~ 280 (521)
T TIGR03801 255 VAMSDESIEKIVDIVANDRPDLMILT 280 (521)
T ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 579999999999999986 776663
No 137
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=35.95 E-value=99 Score=32.87 Aligned_cols=59 Identities=8% Similarity=0.124 Sum_probs=42.2
Q ss_pred CCCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecCC
Q 044344 190 RNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEID 269 (587)
Q Consensus 190 R~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID 269 (587)
+..++.+.++++|+.+...+.- .++++-. +..-..|+.+|+++|+++|+.+ .|.
T Consensus 34 ~~~l~~e~~~~ii~~~~~~g~~--~v~~~GG----------------------EPll~~~~~~ii~~~~~~g~~~--~l~ 87 (358)
T TIGR02109 34 KAELTTEEWTDVLTQAAELGVL--QLHFSGG----------------------EPLARPDLVELVAHARRLGLYT--NLI 87 (358)
T ss_pred cCCCCHHHHHHHHHHHHhcCCc--EEEEeCc----------------------cccccccHHHHHHHHHHcCCeE--EEE
Confidence 4568899999999999877653 4444422 2333467899999999999865 466
Q ss_pred CCCch
Q 044344 270 SPGHT 274 (587)
Q Consensus 270 ~PGH~ 274 (587)
|-|..
T Consensus 88 TNG~l 92 (358)
T TIGR02109 88 TSGVG 92 (358)
T ss_pred eCCcc
Confidence 77764
No 138
>PF12971 NAGLU_N: Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain; InterPro: IPR024240 Alpha-N-acetylglucosaminidase, is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B) characterised by neurological dysfunction but relatively mild somatic manifestations []. The structure shows that the enzyme is composed of three domains. This entry represents the N-terminal domain of Alpha-N-acetylglucosaminidase which has an alpha-beta fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=35.79 E-value=85 Score=26.46 Aligned_cols=45 Identities=9% Similarity=0.090 Sum_probs=30.9
Q ss_pred eEEEEEecCCCCCCCCCCcceEEEeecCCCeEEEEecChhhhhHHHHHHHH
Q 044344 107 TLFITVESLLTPLQHGVNETYTLSIPADASIANLTAHTVWGAMRGLETFSQ 157 (587)
Q Consensus 107 ~i~i~i~~~~~~l~~~~~E~Y~L~i~~~~~~i~I~a~~~~G~~~g~~Tl~Q 157 (587)
.+.+.+.+.. .+.+.|+|+-+. ++.|+|+|++..-+.+|+..-+-
T Consensus 19 ~f~~~~~~~~-----~~~d~F~l~~~~-~gki~I~G~s~vala~Gl~~YLk 63 (86)
T PF12971_consen 19 QFTFELIPSS-----NGKDVFELSSAD-NGKIVIRGNSGVALASGLNWYLK 63 (86)
T ss_dssp GEEEEE---B-----TTBEEEEEEE-S-SS-EEEEESSHHHHHHHHHHHHH
T ss_pred eEEEEEecCC-----CCCCEEEEEeCC-CCeEEEEeCCHHHHHHHHHHHHH
Confidence 3667775432 157899998822 57899999999999999987443
No 139
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=35.62 E-value=2e+02 Score=30.88 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 242 DMQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 242 ~~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
+..||++++++|++.|+++++-||=
T Consensus 187 G~~~s~~~~~~l~~~a~~~~~~iI~ 211 (402)
T TIGR03542 187 GTVLTKEQLKELVDYANEHGSLILF 211 (402)
T ss_pred CccCCHHHHHHHHHHHHHcCeEEEE
Confidence 4589999999999999999998773
No 140
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=35.53 E-value=5.4e+02 Score=27.50 Aligned_cols=138 Identities=17% Similarity=0.213 Sum_probs=80.5
Q ss_pred HHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecCCCCCch-hhH
Q 044344 199 LRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEIDSPGHT-GSW 277 (587)
Q Consensus 199 k~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~PGH~-~a~ 277 (587)
+..++.|+.+.+|..-+++=-|.. - .++.+.++..++.+.|++.|+.|+..+ |- ..|
T Consensus 27 ~d~~~ilk~~G~N~vRlRvwv~P~----------~--------~g~~~~~~~~~~akrak~~Gm~vlldf----HYSD~W 84 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVWVNPY----------D--------GGYNDLEDVIALAKRAKAAGMKVLLDF----HYSDFW 84 (332)
T ss_dssp --HHHHHHHTT--EEEEEE-SS-T----------T--------TTTTSHHHHHHHHHHHHHTT-EEEEEE-----SSSS-
T ss_pred CCHHHHHHhcCCCeEEEEeccCCc----------c--------cccCCHHHHHHHHHHHHHCCCeEEEee----cccCCC
Confidence 568888999999999998843311 1 256899999999999999999999776 21 111
Q ss_pred HHhCchhhhhcccCcCCCCCcccccccCCCCCCcCCCCChhHHHHHHHHHHHHHHhCC-CCeeeeccCCcC-CCCCCCCH
Q 044344 278 AEAYPEIVTCANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKILKNVINDIVNLFP-EAFYHAGADEII-PGCWKADS 355 (587)
Q Consensus 278 ~~~~p~l~~c~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~Ev~~lF~-~~~iHIGgDEv~-~~~w~~~p 355 (587)
. .|.-. ..| ..|.. ..++-....++++.+++++++.+.=- -.++-|| -|++ ...|....
T Consensus 85 a--DPg~Q------~~P--~aW~~--------~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVG-NEin~Gmlwp~g~ 145 (332)
T PF07745_consen 85 A--DPGKQ------NKP--AAWAN--------LSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVG-NEINNGMLWPDGK 145 (332)
T ss_dssp ---BTTB-------B----TTCTS--------SSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEES-SSGGGESTBTTTC
T ss_pred C--CCCCC------CCC--ccCCC--------CCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeC-ccccccccCcCCC
Confidence 1 12110 001 12422 12333457889999999999987543 4688888 5554 56663221
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhcC
Q 044344 356 TIQSFLSNGGTLSQLLEKFVGSTLPYIVFFN 386 (587)
Q Consensus 356 ~~~~~~~~~~~~~~l~~~f~~~~~~~l~~~g 386 (587)
...-+-+..+++.-.+-|++.+
T Consensus 146 ---------~~~~~~~a~ll~ag~~AVr~~~ 167 (332)
T PF07745_consen 146 ---------PSNWDNLAKLLNAGIKAVREVD 167 (332)
T ss_dssp ---------TT-HHHHHHHHHHHHHHHHTHS
T ss_pred ---------ccCHHHHHHHHHHHHHHHHhcC
Confidence 1112335667777777777643
No 141
>PRK07568 aspartate aminotransferase; Provisional
Probab=35.30 E-value=2.6e+02 Score=29.80 Aligned_cols=24 Identities=13% Similarity=0.439 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..+|.+++++|++.|+++++-||-
T Consensus 177 ~~~~~~~~~~i~~~~~~~~~~ii~ 200 (397)
T PRK07568 177 VVYTKEELEMLAEIAKKHDLFLIS 200 (397)
T ss_pred ccCCHHHHHHHHHHHHHCCcEEEE
Confidence 468999999999999999998873
No 142
>PRK10426 alpha-glucosidase; Provisional
Probab=35.20 E-value=2.5e+02 Score=32.79 Aligned_cols=140 Identities=17% Similarity=0.216 Sum_probs=73.3
Q ss_pred CCcccceeeeCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCC-CCCCCCHHHHHHHHH
Q 044344 177 PLFAHRGLILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYG-HDMQYSPDDVKKIVE 255 (587)
Q Consensus 177 P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~-~~~~YT~~ei~eiv~ 255 (587)
|++.++|+.+.. + -+-+.++++++.+...++-.=-+++.|-++.+. .++..-. ...|. ....| -|.+++|+
T Consensus 205 P~Wal~G~~~g~--~-~~~~~v~~v~~~~r~~~IP~d~i~lddw~~~~~--~~~g~~~-~~~~~~d~~~F--Pdp~~mi~ 276 (635)
T PRK10426 205 PDWAYDGVTLGI--Q-GGTEVVQKKLDTMRNAGVKVNGIWAQDWSGIRM--TSFGKRL-MWNWKWDSERY--PQLDSRIK 276 (635)
T ss_pred ChhhccCccccc--c-CCHHHHHHHHHHHHHcCCCeeEEEEeccccccc--ccccccc-cccceEChhhC--CCHHHHHH
Confidence 567778887532 2 246789999999999987644444533333222 1111000 00010 01122 25788999
Q ss_pred HHHhcCCEEEecCCCCCchhhHHHhCchhhhhcccCcC--CCCCcccccccCCCCCCcCCCCChhHHHHHHHHHHH
Q 044344 256 FGLTHGVRVLPEIDSPGHTGSWAEAYPEIVTCANKFWW--PAESNWTNRLASEPGTGHLNPLNPKTYKILKNVIND 329 (587)
Q Consensus 256 yA~~rgI~VIPEID~PGH~~a~~~~~p~l~~c~~~~~~--~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~E 329 (587)
.-+++||+++.-|| |+=.. -...|.|... ..+.. +++.++.... ....++.+|.+||++.+...+.+++
T Consensus 277 ~L~~~G~k~v~~i~-P~v~~-~~~~y~e~~~--~gy~vk~~~g~~~~~~~-~~~~~~~~Dftnp~ar~Ww~~~~~~ 347 (635)
T PRK10426 277 QLNEEGIQFLGYIN-PYLAS-DGDLCEEAAE--KGYLAKDADGGDYLVEF-GEFYAGVVDLTNPEAYEWFKEVIKK 347 (635)
T ss_pred HHHHCCCEEEEEEc-CccCC-CCHHHHHHHH--CCcEEECCCCCEEEeEe-cCCCceeecCCCHHHHHHHHHHHHH
Confidence 99999999998886 32111 0011222211 00000 1111110000 0112457999999999999888765
No 143
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=34.84 E-value=2.2e+02 Score=30.21 Aligned_cols=126 Identities=13% Similarity=0.205 Sum_probs=68.4
Q ss_pred CCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecCCC
Q 044344 191 NYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEIDS 270 (587)
Q Consensus 191 ~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~ 270 (587)
.+.+-+.++++++.+..+++-.=.+++..+ |- ..+..++ |.. ..|. |.+++++..+++|+++++-++-
T Consensus 19 ~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~--~~---~~~~~f~----~d~-~~fP--dp~~m~~~l~~~g~~~~~~~~P 86 (339)
T cd06604 19 SYYPEEEVREIADEFRERDIPCDAIYLDID--YM---DGYRVFT----WDK-ERFP--DPKELIKELHEQGFKVVTIIDP 86 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcceEEECch--hh---CCCCcee----ecc-ccCC--CHHHHHHHHHHCCCEEEEEEeC
Confidence 345789999999999999988655555322 21 1121121 211 2233 5689999999999999976542
Q ss_pred CCchhhHHHhCchhhhhcccCcC--CCCCcccccccCCC-CCCcCCCCChhHHHHHHHHHHHHHH
Q 044344 271 PGHTGSWAEAYPEIVTCANKFWW--PAESNWTNRLASEP-GTGHLNPLNPKTYKILKNVINDIVN 332 (587)
Q Consensus 271 PGH~~a~~~~~p~l~~c~~~~~~--~~~~~~~~~~~~~~-~~~~L~~~~~~t~~fl~~v~~Ev~~ 332 (587)
-=....-...|.|... +.+.. +++..+.. ..-+ ....+|.+||++.++..++++++.+
T Consensus 87 ~v~~~~~~~~~~e~~~--~g~~v~~~~g~~~~~--~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~ 147 (339)
T cd06604 87 GVKVDPGYDVYEEGLE--NDYFVKDPDGELYIG--RVWPGLSAFPDFTNPKVREWWGSLYKKFVD 147 (339)
T ss_pred ceeCCCCChHHHHHHH--CCeEEECCCCCEEEE--EecCCCccccCCCChHHHHHHHHHHHHHhh
Confidence 1111000001111110 00000 11110000 0001 2345899999999999999988764
No 144
>PLN02635 disproportionating enzyme
Probab=34.27 E-value=57 Score=37.11 Aligned_cols=104 Identities=13% Similarity=0.262 Sum_probs=66.6
Q ss_pred CCCHHHHHHHHHHHHhcCCEEEecCCCC-CchhhHHHhCchhhh------------hcccCcCCCCCcccccccCCCCCC
Q 044344 244 QYSPDDVKKIVEFGLTHGVRVLPEIDSP-GHTGSWAEAYPEIVT------------CANKFWWPAESNWTNRLASEPGTG 310 (587)
Q Consensus 244 ~YT~~ei~eiv~yA~~rgI~VIPEID~P-GH~~a~~~~~p~l~~------------c~~~~~~~~~~~~~~~~~~~~~~~ 310 (587)
+.-.+|++++.+||+++||.||=.|-+- +|.++-.-++|++.. ++..+..+.++.|+. |
T Consensus 220 ~~~~~Qw~~l~~yA~~~Gi~L~gDlpi~Va~dSaDvWa~~~lF~ld~~g~p~~~aGaPPD~Fs~~GQ~WG~-----P--- 291 (538)
T PLN02635 220 FLFQRQWQAVRSYANEKGISIIGDMPIYVGGHSADVWANRKLFLLNKTGFPLLVSGVPPDAFSETGQLWGS-----P--- 291 (538)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeecccCCCcHHHhcCHHhhcCCCCCCcceeeeCCCCcCCcccccCCC-----c---
Confidence 3445889999999999999987665542 444444446676642 222333355667764 1
Q ss_pred cCCC--CChhHHHHHHHHHHHHHHhCCC----------CeeeeccCC--cCCCCCCCCH
Q 044344 311 HLNP--LNPKTYKILKNVINDIVNLFPE----------AFYHAGADE--IIPGCWKADS 355 (587)
Q Consensus 311 ~L~~--~~~~t~~fl~~v~~Ev~~lF~~----------~~iHIGgDE--v~~~~w~~~p 355 (587)
.+|+ ....-|.+..+.++..+++|.- .|+.|=.++ ...++|-..|
T Consensus 292 ~y~w~~l~~~gy~ww~~Rlr~~~~~~d~lRIDHf~Gf~r~W~IP~g~~ta~~G~wv~~P 350 (538)
T PLN02635 292 LYDWKAMAKDGYSWWAGRMRRALELYDEFRIDHFRGFAGYWAVPADAKTAMNGRWKVGP 350 (538)
T ss_pred CcCHHHHHhcCcHHHHHHHHHHHHhCCeEEecchhhhheeeeccCCCCCCCCCeeeeCC
Confidence 2444 2466788999999999998852 455555333 4456676665
No 145
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=33.63 E-value=53 Score=37.15 Aligned_cols=70 Identities=11% Similarity=0.255 Sum_probs=53.7
Q ss_pred CCCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHH---HHHHHHHHHhcCCEEEe
Q 044344 190 RNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDD---VKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 190 R~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~e---i~eiv~yA~~rgI~VIP 266 (587)
...+.++.-|.+.+.+....||+...-..||.--|. + | ++-|+.+| ++.||+-|++.+|+.|=
T Consensus 27 GRPWt~EQRK~LFrrl~~~gl~tYlYAPKDDyKHR~-------~-----W--RElY~vEEa~~L~~Li~aAke~~i~F~Y 92 (891)
T KOG3698|consen 27 GRPWTPEQRKHLFRRLNQLGLTTYLYAPKDDYKHRS-------L-----W--RELYNVEEATYLRNLIEAAKENNINFVY 92 (891)
T ss_pred CCCCCHHHHHHHHHHHHhcccceeeecccchhHHHH-------H-----H--HHHhhhHHHHHHHHHHHHHHhcCceEEE
Confidence 445678999999999999999999888888742221 1 3 25688776 57889999999999997
Q ss_pred cCCCCCch
Q 044344 267 EIDSPGHT 274 (587)
Q Consensus 267 EID~PGH~ 274 (587)
.| +||--
T Consensus 93 Ai-SPGlD 99 (891)
T KOG3698|consen 93 AI-SPGLD 99 (891)
T ss_pred Ec-CCCcc
Confidence 76 56643
No 146
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=33.55 E-value=67 Score=36.25 Aligned_cols=104 Identities=15% Similarity=0.249 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHHHHhcCCEEEecCCCC-CchhhHHHhCchhhh------------hcccCcCCCCCcccccccCCCCCC
Q 044344 244 QYSPDDVKKIVEFGLTHGVRVLPEIDSP-GHTGSWAEAYPEIVT------------CANKFWWPAESNWTNRLASEPGTG 310 (587)
Q Consensus 244 ~YT~~ei~eiv~yA~~rgI~VIPEID~P-GH~~a~~~~~p~l~~------------c~~~~~~~~~~~~~~~~~~~~~~~ 310 (587)
+.-.+|++++.+||+++||.||=.+-+- +|-++-.-++|++.. |+.....+.++.|+. |
T Consensus 194 ~~~~~Q~~~~~~yA~~~Gi~L~gDLpigV~~dsaDvWa~~~lF~l~~~~~p~~vaGaPPD~Fs~~GQ~WG~-----P--- 265 (497)
T PRK14508 194 YLFFRQWKALKAYANDKGIEIIGDLPIYVAYDSADVWANPELFKLDEDGKPTVVAGVPPDYFSETGQLWGN-----P--- 265 (497)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEeeecccCCCCHHHHcChhhhcCCCCCCcceeeeCCCCCCCcccCcCCC-----C---
Confidence 3456899999999999999987766553 333333345676631 222222355666764 1
Q ss_pred cCCCC--ChhHHHHHHHHHHHHHHhCCC----------CeeeeccCCcC--CCCCCCCH
Q 044344 311 HLNPL--NPKTYKILKNVINDIVNLFPE----------AFYHAGADEII--PGCWKADS 355 (587)
Q Consensus 311 ~L~~~--~~~t~~fl~~v~~Ev~~lF~~----------~~iHIGgDEv~--~~~w~~~p 355 (587)
.+|+. ...-|+...+.++..+++|.. .++-|-.++.. .++|-..|
T Consensus 266 ~y~w~~l~~~gy~ww~~rlr~~~~~~~~lRIDH~~Gf~r~W~IP~~~~~a~~G~~v~~p 324 (497)
T PRK14508 266 VYNWDALRKDGYRWWIERLRRSFKLYDIVRIDHFRGFEAYWEIPAGEKTAINGRWVPGP 324 (497)
T ss_pred CcCHHHHHhcCcHHHHHHHHHHHHhCCeEEecchhhhceeeeecCCCCCCCCCeeecCC
Confidence 24442 345689999999999999863 45556655432 45666655
No 147
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=33.24 E-value=55 Score=33.18 Aligned_cols=64 Identities=8% Similarity=0.085 Sum_probs=44.4
Q ss_pred ChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecCCC
Q 044344 194 GVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEIDS 270 (587)
Q Consensus 194 ~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~ 270 (587)
.++.+++.|+..+..+...+.+|.... ++. ....+ .| .-..+-+++|.++|+++||++.-|--.
T Consensus 88 ~~~~~~~~i~~a~~lGa~~i~~~~~~~-~~~---~~~~~-----~~----~~~~~~l~~l~~~a~~~gv~l~iE~~~ 151 (275)
T PRK09856 88 SLDMIKLAMDMAKEMNAGYTLISAAHA-GYL---TPPNV-----IW----GRLAENLSELCEYAENIGMDLILEPLT 151 (275)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCCC-CCC---CCHHH-----HH----HHHHHHHHHHHHHHHHcCCEEEEecCC
Confidence 467899999999999999999886532 211 00000 00 013356899999999999999998533
No 148
>PRK01060 endonuclease IV; Provisional
Probab=32.54 E-value=1.8e+02 Score=29.56 Aligned_cols=59 Identities=7% Similarity=0.067 Sum_probs=44.8
Q ss_pred eeeeCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 044344 183 GLILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGV 262 (587)
Q Consensus 183 G~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI 262 (587)
|+|..+.+. +.+.|+.++..++..+++-+.....|. ...+|.++++++-+.++++||
T Consensus 5 g~~~~~~~~------~~~~l~~~~~~G~d~vEl~~~~p~~~~-----------------~~~~~~~~~~~lk~~~~~~gl 61 (281)
T PRK01060 5 GAHVSAAGG------LEGAVAEAAEIGANAFMIFTGNPQQWK-----------------RKPLEELNIEAFKAACEKYGI 61 (281)
T ss_pred EEeeecCCC------HHHHHHHHHHcCCCEEEEECCCCCCCc-----------------CCCCCHHHHHHHHHHHHHcCC
Confidence 555555544 889999999999999998764322221 124799999999999999999
Q ss_pred EE
Q 044344 263 RV 264 (587)
Q Consensus 263 ~V 264 (587)
++
T Consensus 62 ~~ 63 (281)
T PRK01060 62 SP 63 (281)
T ss_pred CC
Confidence 85
No 149
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=32.36 E-value=1.1e+02 Score=33.54 Aligned_cols=73 Identities=12% Similarity=0.145 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeeCCC---CCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecCCCC
Q 044344 195 VDDILRTIKTMSFNKMNVFHWHITDSH---SFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEIDSP 271 (587)
Q Consensus 195 ~~~lk~~Id~ma~~KlN~lh~HltDdq---~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~P 271 (587)
+.-|.+-+|.+..++++.+++=..-.. --++.+..|-++- ..+=|.+|++++++-|++|||.||..+ +.
T Consensus 28 l~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id-------~~~Gt~~d~~~li~~~H~~gi~vi~D~-V~ 99 (505)
T COG0366 28 LKGITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVD-------PHFGTEEDFKELVEEAHKRGIKVILDL-VF 99 (505)
T ss_pred HHhHHHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcC-------cccCCHHHHHHHHHHHHHCCCEEEEEe-cc
Confidence 455568889999999999987543211 1111222221111 123389999999999999999999987 35
Q ss_pred Cchh
Q 044344 272 GHTG 275 (587)
Q Consensus 272 GH~~ 275 (587)
-|+.
T Consensus 100 NH~s 103 (505)
T COG0366 100 NHTS 103 (505)
T ss_pred CcCC
Confidence 5554
No 150
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=32.29 E-value=50 Score=29.71 Aligned_cols=28 Identities=36% Similarity=0.504 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHhcCCEEEecCCCCCchh
Q 044344 246 SPDDVKKIVEFGLTHGVRVLPEIDSPGHTG 275 (587)
Q Consensus 246 T~~ei~eiv~yA~~rgI~VIPEID~PGH~~ 275 (587)
|.+|+++++++|+++++.|.+- .-||..
T Consensus 9 s~~ev~~~v~~a~~~~~~v~~~--g~G~~~ 36 (139)
T PF01565_consen 9 SVEEVQAIVKFANENGVPVRVR--GGGHSW 36 (139)
T ss_dssp SHHHHHHHHHHHHHTTSEEEEE--SSSTTS
T ss_pred CHHHHHHHHHHHHHcCCcEEEE--cCCCCc
Confidence 7899999999999999999986 455553
No 151
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=32.10 E-value=60 Score=32.14 Aligned_cols=81 Identities=19% Similarity=0.347 Sum_probs=60.1
Q ss_pred ChHHHHHHHHHHHhCCCcEEEEEeeCCCCCC---ccCCCCCccccCCCCCCCCCCCHHHH-----------------HHH
Q 044344 194 GVDDILRTIKTMSFNKMNVFHWHITDSHSFP---LVLPSEPDLAAKGSYGHDMQYSPDDV-----------------KKI 253 (587)
Q Consensus 194 ~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr---~e~~~~P~Lt~~ga~~~~~~YT~~ei-----------------~ei 253 (587)
+.+...++.+.+...++..+.+-++...... --.+.||++. .|+ +..+|.+|. .++
T Consensus 18 ~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~-vGA---GTVl~~~~a~~a~~aGA~FivsP~~~~~v 93 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDAL-IGA---GTVLNPEQLRQAVDAGAQFIVSPGLTPEL 93 (204)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCE-EEE---EeCCCHHHHHHHHHcCCCEEECCCCCHHH
Confidence 7799999999999999999998887654432 1124577654 444 235555554 478
Q ss_pred HHHHHhcCCEEEecCCCCCchhhHH
Q 044344 254 VEFGLTHGVRVLPEIDSPGHTGSWA 278 (587)
Q Consensus 254 v~yA~~rgI~VIPEID~PGH~~a~~ 278 (587)
+++|+++||-++|-+=||.......
T Consensus 94 ~~~~~~~~i~~iPG~~TptEi~~A~ 118 (204)
T TIGR01182 94 AKHAQDHGIPIIPGVATPSEIMLAL 118 (204)
T ss_pred HHHHHHcCCcEECCCCCHHHHHHHH
Confidence 8899999999999999998876554
No 152
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=31.75 E-value=2.6e+02 Score=29.60 Aligned_cols=125 Identities=12% Similarity=0.119 Sum_probs=71.7
Q ss_pred CCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecCCC
Q 044344 191 NYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEIDS 270 (587)
Q Consensus 191 ~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~ 270 (587)
.+.+-+.++++++.+..+++..=.+++-.+ |- .++-.++ |. ...|. |.+++|+.-+++||+|++-++
T Consensus 19 ~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~--~~---~~~~~f~----~d-~~~FP--dp~~mi~~L~~~G~k~~~~~~- 85 (339)
T cd06603 19 NYKDQEDVKEVDAGFDEHDIPYDVIWLDIE--HT---DGKRYFT----WD-KKKFP--DPEKMQEKLASKGRKLVTIVD- 85 (339)
T ss_pred CCCCHHHHHHHHHHHHHcCCCceEEEEChH--Hh---CCCCceE----eC-cccCC--CHHHHHHHHHHCCCEEEEEec-
Confidence 456789999999999999998666666322 10 1111111 11 12232 678899999999999999886
Q ss_pred CCchhh-HHHhCchhhhhcccCcC--CCCCcccccccCCC-CCCcCCCCChhHHHHHHHHHHHHHH
Q 044344 271 PGHTGS-WAEAYPEIVTCANKFWW--PAESNWTNRLASEP-GTGHLNPLNPKTYKILKNVINDIVN 332 (587)
Q Consensus 271 PGH~~a-~~~~~p~l~~c~~~~~~--~~~~~~~~~~~~~~-~~~~L~~~~~~t~~fl~~v~~Ev~~ 332 (587)
|+-... -...|.+... ..+.. +++.++. ...-+ ....+|.+||++.++..+.++++..
T Consensus 86 P~v~~~~~~~~y~e~~~--~g~~vk~~~g~~~~--~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~ 147 (339)
T cd06603 86 PHIKRDDGYYVYKEAKD--KGYLVKNSDGGDFE--GWCWPGSSSWPDFLNPEVRDWWASLFSYDKY 147 (339)
T ss_pred CceecCCCCHHHHHHHH--CCeEEECCCCCEEE--EEECCCCcCCccCCChhHHHHHHHHHHHHhh
Confidence 432210 0011222211 00000 1111110 00011 2357899999999999999998865
No 153
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=31.58 E-value=2.1e+02 Score=30.15 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..||.+++++|++.|+++++-||=
T Consensus 156 ~~~~~~~~~~l~~~a~~~~~~ii~ 179 (354)
T PRK06358 156 QLISKEEMKKILDKCEKRNIYLII 179 (354)
T ss_pred CccCHHHHHHHHHHHHhcCCEEEE
Confidence 479999999999999999998774
No 154
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=31.49 E-value=51 Score=33.41 Aligned_cols=104 Identities=13% Similarity=0.148 Sum_probs=66.0
Q ss_pred CCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecCCCC
Q 044344 192 YYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEIDSP 271 (587)
Q Consensus 192 f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~P 271 (587)
.+++..++.+++.|+.| .|- =++ +|+..-.|.++-+|+.++.|+++||.|.|- .+.
T Consensus 8 gl~~~~~~d~Le~~g~y---------ID~----------lKf----g~Gt~~l~~~~~l~eki~la~~~~V~v~~G-Gtl 63 (237)
T TIGR03849 8 GLPPKFVEDYLKVCGDY---------ITF----------VKF----GWGTSALIDRDIVKEKIEMYKDYGIKVYPG-GTL 63 (237)
T ss_pred CCCHHHHHHHHHHhhhh---------eee----------EEe----cCceEeeccHHHHHHHHHHHHHcCCeEeCC-ccH
Confidence 36999999999999875 110 011 344455778899999999999999999876 544
Q ss_pred CchhhHHHhCchhh-hhcccCcCCCCCcccccccCCCCCCcCCCCChhHHHHHHHHHHH
Q 044344 272 GHTGSWAEAYPEIV-TCANKFWWPAESNWTNRLASEPGTGHLNPLNPKTYKILKNVIND 329 (587)
Q Consensus 272 GH~~a~~~~~p~l~-~c~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~v~~E 329 (587)
-|........+++. .|..- .+ ...|.+.+.++...++=.++++.+-+.
T Consensus 64 ~E~~~~q~~~~~Yl~~~k~l-------Gf---~~IEiS~G~~~i~~~~~~rlI~~~~~~ 112 (237)
T TIGR03849 64 FEIAHSKGKFDEYLNECDEL-------GF---EAVEISDGSMEISLEERCNLIERAKDN 112 (237)
T ss_pred HHHHHHhhhHHHHHHHHHHc-------CC---CEEEEcCCccCCCHHHHHHHHHHHHhC
Confidence 44432222333332 35221 11 234556788888777776777665543
No 155
>PRK06836 aspartate aminotransferase; Provisional
Probab=31.34 E-value=1.6e+02 Score=31.65 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHHHh------cCCEEE
Q 044344 243 MQYSPDDVKKIVEFGLT------HGVRVL 265 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~------rgI~VI 265 (587)
..++.+++++|++.|++ +++-||
T Consensus 183 ~~~~~~~~~~l~~la~~~~~~~~~~~~ii 211 (394)
T PRK06836 183 VVYSEETLKALAALLEEKSKEYGRPIYLI 211 (394)
T ss_pred cCCCHHHHHHHHHHHHHhhhccCCCeEEE
Confidence 57999999999999999 787777
No 156
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=31.06 E-value=6.7e+02 Score=26.62 Aligned_cols=122 Identities=18% Similarity=0.271 Sum_probs=71.1
Q ss_pred eeeceEEEccCCccccee-eeCC-----CCCCC-------------ChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccC
Q 044344 167 VASGLYVWDSPLFAHRGL-ILDT-----SRNYY-------------GVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVL 227 (587)
Q Consensus 167 ~p~~~~I~D~P~f~~RG~-mlD~-----aR~f~-------------~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~ 227 (587)
+. .+.+.+.|+.+.|-+ |.|- =|.|- ..+.++.+-+.+|..++|-.-+--....+.
T Consensus 10 ~~-~~~~~~~P~~~~R~lNhWDN~dgsiERGYaG~Sif~~~~~~~~~~~R~~~YARllASiGINgvvlNNVNa~~~---- 84 (328)
T PF07488_consen 10 LS-GLDIVENPKAPLRMLNHWDNLDGSIERGYAGKSIFFWDGLPRRDLTRYRDYARLLASIGINGVVLNNVNANPK---- 84 (328)
T ss_dssp -T-T-EEEE--SSSEEEEE--B-TTS-BTT--SSS-SSEETTEETS--HHHHHHHHHHHHTT--EEE-S-SS--CG----
T ss_pred Cc-CCccccCCCcceeecccccCCCCceecccCcccccccCCCcccchhHHHHHHHHHhhcCCceEEecccccChh----
Confidence 44 678999999999977 3443 23221 236788899999999999887643332221
Q ss_pred CCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecCCCCCchhhHHHhCchhhhhcccCcCCCCCcccccccCCC
Q 044344 228 PSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEIDSPGHTGSWAEAYPEIVTCANKFWWPAESNWTNRLASEP 307 (587)
Q Consensus 228 ~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~PGH~~a~~~~~p~l~~c~~~~~~~~~~~~~~~~~~~~ 307 (587)
.|+.. --++++.|..-.+.+||+|--.++.-.-. +|.
T Consensus 85 ----~Lt~~---------~l~~v~~lAdvfRpYGIkv~LSvnFasP~--------~lg---------------------- 121 (328)
T PF07488_consen 85 ----LLTPE---------YLDKVARLADVFRPYGIKVYLSVNFASPI--------ELG---------------------- 121 (328)
T ss_dssp ----GGSTT---------THHHHHHHHHHHHHTT-EEEEEE-TTHHH--------HTT----------------------
T ss_pred ----hcCHH---------HHHHHHHHHHHHhhcCCEEEEEeeccCCc--------ccC----------------------
Confidence 12211 24688889999999999999877543211 010
Q ss_pred CCCcCCCCChhHHHHHHHHHHHHHHhCCC
Q 044344 308 GTGHLNPLNPKTYKILKNVINDIVNLFPE 336 (587)
Q Consensus 308 ~~~~L~~~~~~t~~fl~~v~~Ev~~lF~~ 336 (587)
+-.+.||.+|++.++-++..+|+-+.+|+
T Consensus 122 gL~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 122 GLPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp S-S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred CcCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 11357899999999999999999999986
No 157
>TIGR03586 PseI pseudaminic acid synthase.
Probab=31.05 E-value=1.6e+02 Score=31.41 Aligned_cols=77 Identities=12% Similarity=0.123 Sum_probs=49.1
Q ss_pred ChHHHHHHHHHHHhCCCcE--EEEEeeCCCCCCccCCCCCc--cccCCCCCC--------CCCCCHHHHHHHHHHHHhcC
Q 044344 194 GVDDILRTIKTMSFNKMNV--FHWHITDSHSFPLVLPSEPD--LAAKGSYGH--------DMQYSPDDVKKIVEFGLTHG 261 (587)
Q Consensus 194 ~~~~lk~~Id~ma~~KlN~--lh~HltDdq~fr~e~~~~P~--Lt~~ga~~~--------~~~YT~~ei~eiv~yA~~rg 261 (587)
+++..|++||..+..+.+. ||.+-.|.-- .++.++ ....+.|.. .-..+.++.++|.+||+++|
T Consensus 15 ~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~G 90 (327)
T TIGR03586 15 SLERALAMIEAAKAAGADAIKLQTYTPDTIT----LDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELG 90 (327)
T ss_pred hHHHHHHHHHHHHHhCCCEEEeeeccHHHhh----ccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhC
Confidence 7899999999999999884 5554433310 011100 001112311 12468899999999999999
Q ss_pred CEEEecCCCCCch
Q 044344 262 VRVLPEIDSPGHT 274 (587)
Q Consensus 262 I~VIPEID~PGH~ 274 (587)
|.++-+.=-..+.
T Consensus 91 i~~~stpfd~~sv 103 (327)
T TIGR03586 91 LTIFSSPFDETAV 103 (327)
T ss_pred CcEEEccCCHHHH
Confidence 9999886444444
No 158
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=30.76 E-value=50 Score=35.69 Aligned_cols=27 Identities=41% Similarity=0.758 Sum_probs=24.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCEEEe-cC
Q 044344 242 DMQYSPDDVKKIVEFGLTHGVRVLP-EI 268 (587)
Q Consensus 242 ~~~YT~~ei~eiv~yA~~rgI~VIP-EI 268 (587)
+..+|++|++.|.+.|+++||.||- ||
T Consensus 172 Grvwt~eeL~~i~elc~kh~v~VISDEI 199 (388)
T COG1168 172 GRVWTKEELRKIAELCLRHGVRVISDEI 199 (388)
T ss_pred CccccHHHHHHHHHHHHHcCCEEEeecc
Confidence 3579999999999999999999997 44
No 159
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=30.17 E-value=98 Score=31.57 Aligned_cols=82 Identities=21% Similarity=0.294 Sum_probs=52.7
Q ss_pred CCcccceeeeCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHH
Q 044344 177 PLFAHRGLILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEF 256 (587)
Q Consensus 177 P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~y 256 (587)
|++.+ |++.-.-+ +.+-+.++++++.+..+++..=.+++.++ |--. +-... =.|. ...| .+.+++++.
T Consensus 7 P~wa~-G~~~~~~~-~~~~~~v~~~~~~~~~~~iP~d~~~lD~~--~~~~---~~~f~--~~~d-~~~F--pdp~~~i~~ 74 (265)
T cd06589 7 PKWAF-GYWLSRYG-YGDQDKVLEVIDGMRENDIPLDGFVLDDD--YTDG---YGDFT--FDWD-AGKF--PNPKSMIDE 74 (265)
T ss_pred cHHHH-HHHHhcCC-CCCHHHHHHHHHHHHHcCCCccEEEECcc--cccC---Cceee--eecC-hhhC--CCHHHHHHH
Confidence 44444 66643322 57889999999999999999777777554 2211 11110 0011 1122 357899999
Q ss_pred HHhcCCEEEecCCC
Q 044344 257 GLTHGVRVLPEIDS 270 (587)
Q Consensus 257 A~~rgI~VIPEID~ 270 (587)
.+++|++|++-++-
T Consensus 75 l~~~g~~~~~~~~P 88 (265)
T cd06589 75 LHDNGVKLVLWIDP 88 (265)
T ss_pred HHHCCCEEEEEeCh
Confidence 99999999998743
No 160
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.10 E-value=76 Score=31.38 Aligned_cols=81 Identities=7% Similarity=0.179 Sum_probs=61.0
Q ss_pred ChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCcc---CCCCCccccCCCCCCCCCCCHHHH-----------------HHH
Q 044344 194 GVDDILRTIKTMSFNKMNVFHWHITDSHSFPLV---LPSEPDLAAKGSYGHDMQYSPDDV-----------------KKI 253 (587)
Q Consensus 194 ~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e---~~~~P~Lt~~ga~~~~~~YT~~ei-----------------~ei 253 (587)
+.+...++++.|..-++..+.+-++..+....- .++||++. .|+ +..+|.++. .++
T Consensus 14 ~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~-vGA---GTVl~~e~a~~ai~aGA~FivSP~~~~~v 89 (201)
T PRK06015 14 DVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAI-VGA---GTILNAKQFEDAAKAGSRFIVSPGTTQEL 89 (201)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCE-Eee---EeCcCHHHHHHHHHcCCCEEECCCCCHHH
Confidence 779999999999999999999998866544310 14567654 454 346666665 467
Q ss_pred HHHHHhcCCEEEecCCCCCchhhHH
Q 044344 254 VEFGLTHGVRVLPEIDSPGHTGSWA 278 (587)
Q Consensus 254 v~yA~~rgI~VIPEID~PGH~~a~~ 278 (587)
+++|+++||-+||-.=||.-.....
T Consensus 90 i~~a~~~~i~~iPG~~TptEi~~A~ 114 (201)
T PRK06015 90 LAAANDSDVPLLPGAATPSEVMALR 114 (201)
T ss_pred HHHHHHcCCCEeCCCCCHHHHHHHH
Confidence 8899999999999999997665433
No 161
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=29.86 E-value=99 Score=32.39 Aligned_cols=61 Identities=11% Similarity=0.092 Sum_probs=37.4
Q ss_pred HHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 198 ILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 198 lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
-|.+++.+|.+=-|..-+-+-+..-=-+.-..||++. ...|.+|+.+.++||++.|++-+.
T Consensus 273 TkpI~~wiae~~g~~~~vNiM~QY~P~ykA~eypeI~--------R~lt~eE~e~a~~~a~~~gl~~~~ 333 (335)
T COG1313 273 TKPILRWIAENLGNDVRVNIMFQYRPEYKAEEYPEIN--------RRLTREEYEKALEYAEKLGLTNIL 333 (335)
T ss_pred cHHHHHHHHHhCCCCeeEEehhhccchhhhhhchhhc--------ccCCHHHHHHHHHHHHHcCCceee
Confidence 4566666666543322222221100002234578885 358999999999999999998664
No 162
>PRK08361 aspartate aminotransferase; Provisional
Probab=29.64 E-value=1.4e+02 Score=32.00 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..++.+++++|++.|++++|-||-
T Consensus 181 ~~~~~~~~~~l~~~~~~~~~~ii~ 204 (391)
T PRK08361 181 ATLDKEVAKAIADIAEDYNIYILS 204 (391)
T ss_pred cCcCHHHHHHHHHHHHHcCeEEEE
Confidence 468999999999999999997773
No 163
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=28.74 E-value=1.8e+02 Score=30.25 Aligned_cols=71 Identities=8% Similarity=0.069 Sum_probs=37.7
Q ss_pred ChHHHHHHHHHHHhCCCcEEEEEeeCC-CCCCccCCCCCccccCCCCCCCCCCC------HHHHHHHHHHHHhcCCEEE
Q 044344 194 GVDDILRTIKTMSFNKMNVFHWHITDS-HSFPLVLPSEPDLAAKGSYGHDMQYS------PDDVKKIVEFGLTHGVRVL 265 (587)
Q Consensus 194 ~~~~lk~~Id~ma~~KlN~lh~HltDd-q~fr~e~~~~P~Lt~~ga~~~~~~YT------~~ei~eiv~yA~~rgI~VI 265 (587)
..+..+.+++..+..++|+++..+.-. .+..-. ..+|...-.+.-....-+| =+.+..+|++|.++||.+-
T Consensus 28 ~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~-n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~ 105 (289)
T PF13204_consen 28 TREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTP-NRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAA 105 (289)
T ss_dssp -HHHHHHHHHHHHHTT--EEEEES-SSSS-B-----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCccccccc-ccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEE
Confidence 458889999999999999999998643 111111 1222222111000000112 1668999999999999885
No 164
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=28.63 E-value=34 Score=38.12 Aligned_cols=44 Identities=20% Similarity=0.371 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcCCEEEe------------------cCCCCCchhhHHHhCchhhhhccc
Q 044344 247 PDDVKKIVEFGLTHGVRVLP------------------EIDSPGHTGSWAEAYPEIVTCANK 290 (587)
Q Consensus 247 ~~ei~eiv~yA~~rgI~VIP------------------EID~PGH~~a~~~~~p~l~~c~~~ 290 (587)
++|+-+=.+.-++|||+|=- -||||||...-..--..|..|.+.
T Consensus 42 ~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGa 103 (603)
T COG0481 42 RAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGA 103 (603)
T ss_pred HHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEEehhhHhhCCCc
Confidence 34455566788999998743 499999997533322345567543
No 165
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=28.62 E-value=5e+02 Score=28.82 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 242 DMQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 242 ~~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
+..+|.+.-++|++.|+++++-||=
T Consensus 241 G~tms~~rR~~Ll~lA~~~~~~IIE 265 (459)
T COG1167 241 GVTMSLERRKALLALAEKYDVLIIE 265 (459)
T ss_pred CCccCHHHHHHHHHHHHHcCCeEEe
Confidence 3579999999999999999998883
No 166
>PF09183 DUF1947: Domain of unknown function (DUF1947); InterPro: IPR015266 Members of this entry are a set of hypothetical archaeal proteins. Their exact function has not, as yet, been defined. ; PDB: 1Q7H_A.
Probab=28.52 E-value=37 Score=27.35 Aligned_cols=23 Identities=9% Similarity=0.218 Sum_probs=16.1
Q ss_pred CCCCCChHHHHHHHHHHHh-CCCc
Q 044344 189 SRNYYGVDDILRTIKTMSF-NKMN 211 (587)
Q Consensus 189 aR~f~~~~~lk~~Id~ma~-~KlN 211 (587)
.|||+|...+|++++.|.. |+++
T Consensus 1 qRH~LSkKe~k~~~~k~~~~ygId 24 (65)
T PF09183_consen 1 QRHFLSKKEIKEIKEKIKEKYGID 24 (65)
T ss_dssp --EE--HHHHHHHHHHHHT-TT--
T ss_pred CcccccHHHHHHHHHHHHHHhCcC
Confidence 4999999999999999998 7765
No 167
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=28.21 E-value=2.6e+02 Score=29.95 Aligned_cols=24 Identities=8% Similarity=0.261 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..+|.+++++|++.|+++|+-||=
T Consensus 183 ~~~~~~~~~~l~~~a~~~~~~ii~ 206 (401)
T TIGR01264 183 SVFSRQHLEEILAVAERQCLPIIA 206 (401)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEE
Confidence 468999999999999999998873
No 168
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=27.96 E-value=1.1e+02 Score=27.10 Aligned_cols=99 Identities=10% Similarity=0.076 Sum_probs=58.3
Q ss_pred EEEEecChhhhhHHHHHHHHhhcCCCC-eee-eeceEEEccCCcccce---eeeCCCCCCCChHHHHHHHHHHHhCCCcE
Q 044344 138 ANLTAHTVWGAMRGLETFSQLVWGKPN-LLV-ASGLYVWDSPLFAHRG---LILDTSRNYYGVDDILRTIKTMSFNKMNV 212 (587)
Q Consensus 138 i~I~a~~~~G~~~g~~Tl~Ql~~~~~~-~~~-p~~~~I~D~P~f~~RG---~mlD~aR~f~~~~~lk~~Id~ma~~KlN~ 212 (587)
|-|-|.+..---+|-+.+.+|....-. +.+ |..-+|...+.|+-=. --+|++=-+.|.+.+-.+++.+...+...
T Consensus 3 iAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g~~~ 82 (116)
T PF13380_consen 3 IAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALGVKA 82 (116)
T ss_dssp EEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT-SE
T ss_pred EEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcCCCE
Confidence 555665555445677777777763211 111 1233444444443322 45777777899999999999999999888
Q ss_pred EEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEE
Q 044344 213 FHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVL 265 (587)
Q Consensus 213 lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VI 265 (587)
+.++.. ++=++++++|++.||+|+
T Consensus 83 v~~~~g-----------------------------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 83 VWLQPG-----------------------------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp EEE-TT-----------------------------S--HHHHHHHHHTT-EEE
T ss_pred EEEEcc-----------------------------hHHHHHHHHHHHcCCEEE
Confidence 887642 344688999999999999
No 169
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.51 E-value=77 Score=31.53 Aligned_cols=80 Identities=10% Similarity=0.242 Sum_probs=58.8
Q ss_pred CChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCc--c-CCCCCccccCCCCCCCCCCCHHHH-----------------HH
Q 044344 193 YGVDDILRTIKTMSFNKMNVFHWHITDSHSFPL--V-LPSEPDLAAKGSYGHDMQYSPDDV-----------------KK 252 (587)
Q Consensus 193 ~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~--e-~~~~P~Lt~~ga~~~~~~YT~~ei-----------------~e 252 (587)
.+.+...++++.+...++..+.+-++..++.+. + .+.||++. .|+ +...|.+|. .+
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~-IGA---GTVl~~~~a~~a~~aGA~FivsP~~~~~ 99 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEAL-IGA---GTVLNPEQLAQAIEAGAQFIVSPGLTPP 99 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCE-EEE---eeccCHHHHHHHHHcCCCEEECCCCCHH
Confidence 467899999999999999999998887765542 1 13577653 444 234444443 37
Q ss_pred HHHHHHhcCCEEEecCCCCCchhh
Q 044344 253 IVEFGLTHGVRVLPEIDSPGHTGS 276 (587)
Q Consensus 253 iv~yA~~rgI~VIPEID~PGH~~a 276 (587)
++++|++++|.+||.+-+|.-...
T Consensus 100 vi~~a~~~~i~~iPG~~TptEi~~ 123 (212)
T PRK05718 100 LLKAAQEGPIPLIPGVSTPSELML 123 (212)
T ss_pred HHHHHHHcCCCEeCCCCCHHHHHH
Confidence 889999999999999999975443
No 170
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=26.58 E-value=1.1e+03 Score=27.76 Aligned_cols=180 Identities=13% Similarity=0.108 Sum_probs=92.7
Q ss_pred ceeeeCCCCCCC--C---hHHHHHHHHHHHhCCCcEEEEEeeCC---CCCCccCCCCCc--cccCCCCCCCCCCCHHHHH
Q 044344 182 RGLILDTSRNYY--G---VDDILRTIKTMSFNKMNVFHWHITDS---HSFPLVLPSEPD--LAAKGSYGHDMQYSPDDVK 251 (587)
Q Consensus 182 RG~mlD~aR~f~--~---~~~lk~~Id~ma~~KlN~lh~HltDd---q~fr~e~~~~P~--Lt~~ga~~~~~~YT~~ei~ 251 (587)
|-+|+|.---+- | .+.|.++||.+...|+|++-++.--| .|. +...=||. |+- ...-|+.=..
T Consensus 315 r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~-~~s~yfP~~~lp~-----r~d~f~~~aw- 387 (671)
T PRK14582 315 RVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQISTVYLQAFADPDGDGL-VKELYFPNRLLPM-----RADLFNRVAW- 387 (671)
T ss_pred EEEEeccccccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCcc-ccccccCcccccc-----ccCCcCHHHH-
Confidence 555665433331 2 37788999999999999999887221 111 11111221 110 1123333221
Q ss_pred HHHHHHHhcCCEEEecCCCCCchhhHHHhCchhhhhcccCcCCCCCcccccccCCC-CCCcCCCCChhHHHHHHHHHHHH
Q 044344 252 KIVEFGLTHGVRVLPEIDSPGHTGSWAEAYPEIVTCANKFWWPAESNWTNRLASEP-GTGHLNPLNPKTYKILKNVINDI 330 (587)
Q Consensus 252 eiv~yA~~rgI~VIPEID~PGH~~a~~~~~p~l~~c~~~~~~~~~~~~~~~~~~~~-~~~~L~~~~~~t~~fl~~v~~Ev 330 (587)
+.|.++||+|---+.+-+=.. -...|....-. +...+ ....+ ....|+|.+|++.++|.+|+.|+
T Consensus 388 ---~l~~r~~v~v~AWmp~~~~~~--~~~~~~~~~~~-----~~~~~----~~~~~~~~~rl~P~~pe~r~~i~~i~~dl 453 (671)
T PRK14582 388 ---QLRTRAGVNVYAWMPVLSFDL--DPTLPRVKRLD-----TGEGK----AQIHPEQYRRLSPFDDRVRAQVGMLYEDL 453 (671)
T ss_pred ---HHHHhhCCEEEEeccceeecc--CCCcchhhhcc-----ccCCc----cccCCCCCcCCCCCCHHHHHHHHHHHHHH
Confidence 238899999986655543211 00111110000 00000 00000 12359999999999999999999
Q ss_pred HHhCCCCeeeeccCCcCCCCCC-CCHH-HHHHHHcCC----------CH----------HHHHHHHHHHHHHHHHh
Q 044344 331 VNLFPEAFYHAGADEIIPGCWK-ADST-IQSFLSNGG----------TL----------SQLLEKFVGSTLPYIVF 384 (587)
Q Consensus 331 ~~lF~~~~iHIGgDEv~~~~w~-~~p~-~~~~~~~~~----------~~----------~~l~~~f~~~~~~~l~~ 384 (587)
+.-.+-.=||.=-|=+ ...++ .+|. ++.|.+ .| ++ .+.+..|.+++.+.++.
T Consensus 454 a~~~~~dGilf~Dd~~-l~d~ed~s~~a~~~~~~-~g~~~~~~~~~~~~~~~~~wt~~k~~~l~~f~~~l~~~v~~ 527 (671)
T PRK14582 454 AGHAAFDGILFHDDAV-LSDYEDASAPAITAYQQ-AGFSGSLSEIRQNPEQFKQWTRFKSRALTDFTLELSARVKA 527 (671)
T ss_pred HHhCCCceEEeccccc-ccccccCCHHHHHHHHH-cCCCcchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9976655555543333 32233 3443 333322 22 11 13345678888777776
No 171
>PLN02950 4-alpha-glucanotransferase
Probab=26.56 E-value=97 Score=37.66 Aligned_cols=92 Identities=13% Similarity=0.284 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhcCCEEEecCCCC-CchhhHHHhCchhhh------hcccCcCCCCCcccccccCCCCCCcCCCC--Chh
Q 044344 248 DDVKKIVEFGLTHGVRVLPEIDSP-GHTGSWAEAYPEIVT------CANKFWWPAESNWTNRLASEPGTGHLNPL--NPK 318 (587)
Q Consensus 248 ~ei~eiv~yA~~rgI~VIPEID~P-GH~~a~~~~~p~l~~------c~~~~~~~~~~~~~~~~~~~~~~~~L~~~--~~~ 318 (587)
+|++++.+||+++||.++=.|-+- .|-++-.-++|++.. ++.....+.++.|+. | .+|+. ..+
T Consensus 461 ~Ql~~~~~yA~~~Gi~L~GDLpigV~~dSaDvWa~p~lF~l~~~aGaPPD~Fs~~GQ~WG~-----P---~ynw~~l~~~ 532 (909)
T PLN02950 461 SQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAPPDYFDKNGQNWGF-----P---TYNWEEMSKD 532 (909)
T ss_pred HHHHHHHHHHHHCCCEEEEEeeceeCCCcHHHhcCHHHhcCCCccCCCCCcCCcccccCCC-----C---CcCHHHHHhc
Confidence 567889999999999987665543 343444446787742 222222356677764 1 24442 355
Q ss_pred HHHHHHHHHHHHHHhCCC----------CeeeeccCCcC
Q 044344 319 TYKILKNVINDIVNLFPE----------AFYHAGADEII 347 (587)
Q Consensus 319 t~~fl~~v~~Ev~~lF~~----------~~iHIGgDEv~ 347 (587)
-|....+.++..+++|.. .++-|=.+++.
T Consensus 533 gy~ww~~Rlr~~~~~~d~lRIDH~~Gf~r~W~IP~~~~~ 571 (909)
T PLN02950 533 NYAWWRARLTQMAKYFTAYRIDHILGFFRIWELPAHAVT 571 (909)
T ss_pred CcHHHHHHHHHHHHhCCEEEEecchhhcEeeEecCCCcc
Confidence 788899999999999863 34555556553
No 172
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.44 E-value=3.8e+02 Score=29.06 Aligned_cols=118 Identities=14% Similarity=0.177 Sum_probs=0.0
Q ss_pred CCcceEEEeecCCCeEEEEecChhhhhHHHHHHHHhhcCCCCeeeeeceEEE-ccCCcccceeeeCCCCCCCChHHHHHH
Q 044344 123 VNETYTLSIPADASIANLTAHTVWGAMRGLETFSQLVWGKPNLLVASGLYVW-DSPLFAHRGLILDTSRNYYGVDDILRT 201 (587)
Q Consensus 123 ~~E~Y~L~i~~~~~~i~I~a~~~~G~~~g~~Tl~Ql~~~~~~~~~p~~~~I~-D~P~f~~RG~mlD~aR~f~~~~~lk~~ 201 (587)
.+.++.+.++ ...|+|+.+ |+...+.-|.+. .++..+.|+ |+|.=+.|.-+.-+.+.-++++.|.+.
T Consensus 200 ~~~~~~~~is--~r~ItisT~---Gl~~~i~~L~~~-------gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~ 267 (368)
T PRK14456 200 STRKYRFSIS--QRKITISTV---GITPEIDRLATS-------GLKTKLAVSLHSADQEKRERLMPQAARDYPLDELREA 267 (368)
T ss_pred hccccccCcC--cCeeEEECC---CChHHHHHHHHc-------CCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHHH
Q ss_pred HHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhc--CCEEEecCCCCC
Q 044344 202 IKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTH--GVRVLPEIDSPG 272 (587)
Q Consensus 202 Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~r--gI~VIPEID~PG 272 (587)
|+..+...-..+.+. |+-+....- +.+|+++|+++++.+ +|++||--.+++
T Consensus 268 i~~~~~~~g~~V~ie-------------yvLI~GvND-------s~eda~~L~~~l~~~~~~VnlIpyn~~~~ 320 (368)
T PRK14456 268 LIGYASKTGEPVTLV-------------YMLLEGIND-------SPEDARKLIRFASRFFCKINLIDYNSIVN 320 (368)
T ss_pred HHHHHHhcCCeEEEE-------------EEEEcCCCC-------CHHHHHHHHHHHhcCCCeeEEeeeccCCC
No 173
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=25.26 E-value=3.4e+02 Score=33.62 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=68.9
Q ss_pred CChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecCCCCC
Q 044344 193 YGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEIDSPG 272 (587)
Q Consensus 193 ~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~PG 272 (587)
++.+.+++-|..|..+.+|.+-.|- ||.- .++.+.|-+.||-|+-|+|+-+
T Consensus 352 ~~~e~~~~dl~lmK~~g~NavR~sH------------yP~~-----------------~~fydlcDe~GllV~dE~~~e~ 402 (1021)
T PRK10340 352 VGMDRVEKDIQLMKQHNINSVRTAH------------YPND-----------------PRFYELCDIYGLFVMAETDVES 402 (1021)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEecC------------CCCC-----------------HHHHHHHHHCCCEEEECCcccc
Confidence 5778999999999999999987652 2321 1456889999999999999888
Q ss_pred chhh------HHHhCchhhh-----hcccCcCCCCCcccccccCCCCCCcCCCCChhHH-HHHHHHHHHHHHhCCCCeee
Q 044344 273 HTGS------WAEAYPEIVT-----CANKFWWPAESNWTNRLASEPGTGHLNPLNPKTY-KILKNVINDIVNLFPEAFYH 340 (587)
Q Consensus 273 H~~a------~~~~~p~l~~-----c~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~t~-~fl~~v~~Ev~~lF~~~~iH 340 (587)
|... +....|+... +... -.|..+.|+--..+..||..+ ..+..+.+-+.++=|+..+|
T Consensus 403 ~g~~~~~~~~~~~~~p~~~~~~~~~~~~m---------V~RdrNHPSIi~WslGNE~~~g~~~~~~~~~~k~~DptR~v~ 473 (1021)
T PRK10340 403 HGFANVGDISRITDDPQWEKVYVDRIVRH---------IHAQKNHPSIIIWSLGNESGYGCNIRAMYHAAKALDDTRLVH 473 (1021)
T ss_pred cCcccccccccccCCHHHHHHHHHHHHHH---------HHhCCCCCEEEEEECccCccccHHHHHHHHHHHHhCCCceEE
Confidence 7621 0001111100 0000 001112222223344454422 22366777777788899999
Q ss_pred eccCC
Q 044344 341 AGADE 345 (587)
Q Consensus 341 IGgDE 345 (587)
..+|.
T Consensus 474 ~~~~~ 478 (1021)
T PRK10340 474 YEEDR 478 (1021)
T ss_pred eCCCc
Confidence 98875
No 174
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=24.68 E-value=90 Score=34.36 Aligned_cols=70 Identities=21% Similarity=0.243 Sum_probs=0.0
Q ss_pred eeeeCCCCCC---CChHHHHHHHHHHHhCC-----CcEEEEEeeCCCCCCccCCCCCccccCCCCCCC---------CCC
Q 044344 183 GLILDTSRNY---YGVDDILRTIKTMSFNK-----MNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHD---------MQY 245 (587)
Q Consensus 183 G~mlD~aR~f---~~~~~lk~~Id~ma~~K-----lN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~---------~~Y 245 (587)
|+.||++.-| +.+.+...+-..|..+. =..-|+|+.|+ ++.++.+ |..
T Consensus 304 GvCLDTcHafaAGydl~t~e~~~~~l~~f~~~iGl~rL~~vHLNDS---------------k~~~GS~~DRH~~IG~G~I 368 (413)
T PTZ00372 304 GVCLDTCHLFAAGYDIRTKESFDKVMKEFDEIVGLKYLKAVHLNDS---------------KSDLGSGLDRHENIGKGKL 368 (413)
T ss_pred EEEEEHHHHHhcCCCCCcHHHHHHHHHHHHHhcChhheeEEEEEcC---------------CCccCCCcccccCcCCCCc
Q ss_pred CHHHHHHHHHHHHhcCCEEEec
Q 044344 246 SPDDVKKIVEFGLTHGVRVLPE 267 (587)
Q Consensus 246 T~~ei~eiv~yA~~rgI~VIPE 267 (587)
-.+-++.|+...+-.+|.+|-|
T Consensus 369 g~~~f~~l~~~~~~~~iP~ILE 390 (413)
T PTZ00372 369 GMETFKFIMNSKYFKNIPIILE 390 (413)
T ss_pred ChHHHHHHHhChhhCCCeEEEe
No 175
>PRK05764 aspartate aminotransferase; Provisional
Probab=24.46 E-value=1.2e+02 Score=32.31 Aligned_cols=24 Identities=29% Similarity=0.666 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..+|.+++++|++.|+++||-||-
T Consensus 179 ~~~~~~~~~~l~~~a~~~~~~ii~ 202 (393)
T PRK05764 179 AVYSPEELEAIADVAVEHDIWVLS 202 (393)
T ss_pred cccCHHHHHHHHHHHHHCCcEEEE
Confidence 468999999999999999998884
No 176
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=24.12 E-value=43 Score=37.28 Aligned_cols=22 Identities=27% Similarity=0.724 Sum_probs=17.1
Q ss_pred HHHHhcCCEEEec-------------CCCCCchhh
Q 044344 255 EFGLTHGVRVLPE-------------IDSPGHTGS 276 (587)
Q Consensus 255 ~yA~~rgI~VIPE-------------ID~PGH~~a 276 (587)
+.-++|||+|.-. +|+|||+..
T Consensus 47 DlEkERGITILaKnTav~~~~~~INIvDTPGHADF 81 (603)
T COG1217 47 DLEKERGITILAKNTAVNYNGTRINIVDTPGHADF 81 (603)
T ss_pred chhhhcCcEEEeccceeecCCeEEEEecCCCcCCc
Confidence 3457899988653 899999964
No 177
>PRK06107 aspartate aminotransferase; Provisional
Probab=23.77 E-value=2.7e+02 Score=29.90 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHHHhc-CCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTH-GVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~r-gI~VIP 266 (587)
..||.+++++|++.|+++ ||-||=
T Consensus 181 ~~~s~~~~~~l~~~a~~~~~~~iI~ 205 (402)
T PRK06107 181 AVYSRAELRALADVLLRHPHVLVLT 205 (402)
T ss_pred cCcCHHHHHHHHHHHHHcCCeEEEE
Confidence 478999999999999997 988874
No 178
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=23.73 E-value=3.7e+02 Score=29.63 Aligned_cols=67 Identities=18% Similarity=0.337 Sum_probs=47.6
Q ss_pred eeeCCCCCC-CChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 044344 184 LILDTSRNY-YGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGV 262 (587)
Q Consensus 184 ~mlD~aR~f-~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI 262 (587)
++++.+-+| +.++.+..-.........+|=-+-++. |+-|- +..||++++..++.+|.+++|
T Consensus 198 v~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitN--------PsNPL---------G~~~~~e~L~~ll~Fa~~kni 260 (471)
T KOG0256|consen 198 VHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITN--------PSNPL---------GTTLSPEELISLLNFASRKNI 260 (471)
T ss_pred EEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeC--------CCCCC---------CCccCHHHHHHHHHHHhhcce
Confidence 456666665 567777777777777666665555543 33331 247999999999999999999
Q ss_pred EEEec
Q 044344 263 RVLPE 267 (587)
Q Consensus 263 ~VIPE 267 (587)
.||-.
T Consensus 261 HvI~D 265 (471)
T KOG0256|consen 261 HVISD 265 (471)
T ss_pred EEEee
Confidence 99863
No 179
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=23.40 E-value=83 Score=35.09 Aligned_cols=37 Identities=8% Similarity=0.126 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEecCCCCCchhhHHH
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLPEIDSPGHTGSWAE 279 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIPEID~PGH~~a~~~ 279 (587)
..++++++++++++|++.|++++-|+...-....++.
T Consensus 141 ~~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~ 177 (454)
T PRK09427 141 SVLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIA 177 (454)
T ss_pred HhCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHh
Confidence 3688999999999999999999999944443333333
No 180
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=23.07 E-value=92 Score=31.77 Aligned_cols=65 Identities=18% Similarity=0.347 Sum_probs=44.1
Q ss_pred cCCcccceeeeCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHH
Q 044344 176 SPLFAHRGLILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVE 255 (587)
Q Consensus 176 ~P~f~~RG~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~ 255 (587)
.||-.=-=+++|-+ +++..++.+++.++.| .| +=++ +|+..-.|..+-+++.++
T Consensus 8 KPR~~GlT~v~Dkg---lg~~~~~dlLe~ag~y---------ID----------~~K~----g~Gt~~l~~~~~l~eki~ 61 (244)
T PF02679_consen 8 KPRSRGLTMVIDKG---LGLRYLEDLLESAGDY---------ID----------FLKF----GWGTSALYPEEILKEKID 61 (244)
T ss_dssp SS-SSS-EEEEESS-----HHHHHHHHHHHGGG----------S----------EEEE-----TTGGGGSTCHHHHHHHH
T ss_pred CCCCCCcEEEecCC---CCHHHHHHHHHHhhhh---------cc----------EEEe----cCceeeecCHHHHHHHHH
Confidence 35544344578877 9999999999999875 11 0011 245556789999999999
Q ss_pred HHHhcCCEEEe
Q 044344 256 FGLTHGVRVLP 266 (587)
Q Consensus 256 yA~~rgI~VIP 266 (587)
.|+++||.|.|
T Consensus 62 l~~~~gV~v~~ 72 (244)
T PF02679_consen 62 LAHSHGVYVYP 72 (244)
T ss_dssp HHHCTT-EEEE
T ss_pred HHHHcCCeEeC
Confidence 99999999975
No 181
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=22.83 E-value=1.2e+02 Score=30.93 Aligned_cols=61 Identities=11% Similarity=0.078 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecC
Q 044344 195 VDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEI 268 (587)
Q Consensus 195 ~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEI 268 (587)
++.+++.|+.++..+.+++.++-. +.. +...... .| ....+-+++++++|+++||+|.-|-
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~-----~~~---~~~~~~~-~~----~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAGY-----DVY---YEEHDEE-TR----RRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCc-----ccc---cCcCCHH-HH----HHHHHHHHHHHHHHHHcCCEEEEee
Confidence 577999999999999999876531 110 0000000 01 1345789999999999999999994
No 182
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=22.52 E-value=2.1e+02 Score=30.54 Aligned_cols=73 Identities=10% Similarity=0.164 Sum_probs=46.9
Q ss_pred ChHHHHHHHHHHHhCCCc--EEEEEeeCCCCCCccCCCCCc--cccCCCCC--------CCCCCCHHHHHHHHHHHHhcC
Q 044344 194 GVDDILRTIKTMSFNKMN--VFHWHITDSHSFPLVLPSEPD--LAAKGSYG--------HDMQYSPDDVKKIVEFGLTHG 261 (587)
Q Consensus 194 ~~~~lk~~Id~ma~~KlN--~lh~HltDdq~fr~e~~~~P~--Lt~~ga~~--------~~~~YT~~ei~eiv~yA~~rg 261 (587)
+++.-|++||..+..+.. .||.+..|..- .+..++ ......|. ..-.++.+++++|.+||++.|
T Consensus 14 dl~~A~~lI~~A~~aGadaVKfQt~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~G 89 (329)
T TIGR03569 14 SLELAKKLVDAAAEAGADAVKFQTFKAEDLV----SKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKG 89 (329)
T ss_pred cHHHHHHHHHHHHHhCCCEEEeeeCCHHHhh----CcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 789999999999999887 45555433310 111111 00001121 013478999999999999999
Q ss_pred CEEEecCCC
Q 044344 262 VRVLPEIDS 270 (587)
Q Consensus 262 I~VIPEID~ 270 (587)
|.++-+.=-
T Consensus 90 i~~~stpfd 98 (329)
T TIGR03569 90 IEFLSTPFD 98 (329)
T ss_pred CcEEEEeCC
Confidence 999977533
No 183
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.40 E-value=1.5e+02 Score=29.85 Aligned_cols=81 Identities=15% Similarity=0.110 Sum_probs=61.0
Q ss_pred ChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCc------cC-CCCCccccCCCCCCCCCCCHHHH----------------
Q 044344 194 GVDDILRTIKTMSFNKMNVFHWHITDSHSFPL------VL-PSEPDLAAKGSYGHDMQYSPDDV---------------- 250 (587)
Q Consensus 194 ~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~------e~-~~~P~Lt~~ga~~~~~~YT~~ei---------------- 250 (587)
+.+...++++.+..-++..+.+-++..++... ++ ++||++. .|+ +..+|.++.
T Consensus 25 ~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~-vGa---GTVl~~e~a~~a~~aGA~FiVsP~~ 100 (222)
T PRK07114 25 DVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMI-LGV---GSIVDAATAALYIQLGANFIVTPLF 100 (222)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeE-Eee---EeCcCHHHHHHHHHcCCCEEECCCC
Confidence 67889999999999999999998876554431 11 4577765 454 346677665
Q ss_pred -HHHHHHHHhcCCEEEecCCCCCchhhHH
Q 044344 251 -KKIVEFGLTHGVRVLPEIDSPGHTGSWA 278 (587)
Q Consensus 251 -~eiv~yA~~rgI~VIPEID~PGH~~a~~ 278 (587)
.+|+++|+++||-+||-+=||.-.....
T Consensus 101 ~~~v~~~~~~~~i~~iPG~~TpsEi~~A~ 129 (222)
T PRK07114 101 NPDIAKVCNRRKVPYSPGCGSLSEIGYAE 129 (222)
T ss_pred CHHHHHHHHHcCCCEeCCCCCHHHHHHHH
Confidence 4688999999999999999997665543
No 184
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=22.22 E-value=86 Score=25.84 Aligned_cols=37 Identities=16% Similarity=0.363 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHhcCCEEEecCCCCCchhhHHHhCchh
Q 044344 245 YSPDDVKKIVEFGLTHGVRVLPEIDSPGHTGSWAEAYPEI 284 (587)
Q Consensus 245 YT~~ei~eiv~yA~~rgI~VIPEID~PGH~~a~~~~~p~l 284 (587)
+-..=+++.++||+++|..|+|.= .=+..+++.+|++
T Consensus 39 ia~~L~~~~l~~a~~~~~kv~p~C---~y~~~~~~~hpey 75 (78)
T PF14542_consen 39 IAKKLVEAALDYARENGLKVVPTC---SYVAKYFRRHPEY 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEETS---HHHHHHHHH-GGG
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEC---HHHHHHHHhCccc
Confidence 567889999999999999999962 1223456677775
No 185
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=22.09 E-value=6.3e+02 Score=26.79 Aligned_cols=54 Identities=13% Similarity=0.163 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecCCCCCch
Q 044344 195 VDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEIDSPGHT 274 (587)
Q Consensus 195 ~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~PGH~ 274 (587)
.+.-+|=|..|..++.|++..+-.|. .+ +=.+...--++-||=||-.++.|+.+
T Consensus 52 ~~~C~rDi~~l~~LgiNtIRVY~vdp-----------~~---------------nHd~CM~~~~~aGIYvi~Dl~~p~~s 105 (314)
T PF03198_consen 52 PEACKRDIPLLKELGINTIRVYSVDP-----------SK---------------NHDECMSAFADAGIYVILDLNTPNGS 105 (314)
T ss_dssp HHHHHHHHHHHHHHT-SEEEES---T-----------TS-----------------HHHHHHHHHTT-EEEEES-BTTBS
T ss_pred HHHHHHhHHHHHHcCCCEEEEEEeCC-----------CC---------------CHHHHHHHHHhCCCEEEEecCCCCcc
Confidence 36788889999999999999876652 11 22344455667899999999999443
No 186
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=22.06 E-value=93 Score=36.61 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHHhcCCEEEecCCCCCchhhHHHh
Q 044344 244 QYSPDDVKKIVEFGLTHGVRVLPEIDSPGHTGSWAEA 280 (587)
Q Consensus 244 ~YT~~ei~eiv~yA~~rgI~VIPEID~PGH~~a~~~~ 280 (587)
.++++++++|+++|++.|++++-|+-..-....++++
T Consensus 143 ~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ 179 (695)
T PRK13802 143 ALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAA 179 (695)
T ss_pred hcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhC
Confidence 5789999999999999999999999554444444443
No 187
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=22.02 E-value=1.5e+02 Score=35.27 Aligned_cols=82 Identities=10% Similarity=0.200 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHhcCCEEEecCCCC-CchhhHHHhCchhhh------hcccCcCCCCCcccccccCCCCCCcCCC--CC
Q 044344 246 SPDDVKKIVEFGLTHGVRVLPEIDSP-GHTGSWAEAYPEIVT------CANKFWWPAESNWTNRLASEPGTGHLNP--LN 316 (587)
Q Consensus 246 T~~ei~eiv~yA~~rgI~VIPEID~P-GH~~a~~~~~p~l~~------c~~~~~~~~~~~~~~~~~~~~~~~~L~~--~~ 316 (587)
=..|++++.+||+++||.++=.+-+- .+-++-.-++|++.. ++.....+.|+.|+. | .+|+ ..
T Consensus 272 ~~~Q~~~~~~yA~~~GI~L~GDLPIgVa~dSaDvWa~p~lF~ld~~aGAPPD~FS~~GQnWG~-----P---~YnW~~l~ 343 (745)
T PLN03236 272 LDRQLRRAAAHAAAKGVILKGDLPIGVDKASVDTWMHPKLFRMDTSTGAPPDAFDANGQNWGF-----P---TYDWEEMA 343 (745)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeeceeCCCcHHHhcCHHHhcCCCCcCCCCCCCCcccCcCCC-----C---CcCHHHHH
Confidence 34889999999999999987665443 333333446787742 232333466777764 1 2444 23
Q ss_pred hhHHHHHHHHHHHHHHhCC
Q 044344 317 PKTYKILKNVINDIVNLFP 335 (587)
Q Consensus 317 ~~t~~fl~~v~~Ev~~lF~ 335 (587)
..-|....+.++..+++|.
T Consensus 344 ~dgY~WWr~Rlr~~~~~~d 362 (745)
T PLN03236 344 EDDYAWWRARMQHLEQFFS 362 (745)
T ss_pred hcCcHHHHHHHHHHHHhCC
Confidence 4567888888899888886
No 188
>PRK10626 hypothetical protein; Provisional
Probab=21.20 E-value=5.7e+02 Score=26.05 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=29.9
Q ss_pred ceeecCceEEEcCCcceEEcCCCeEEEcCC-----chhHHHHHHHHHHHHHhh
Q 044344 37 NVWPKPRIMSWTTQPRANLLSPSFAISSPK-----HFYLSSAANRYLKLIKNE 84 (587)
Q Consensus 37 ~l~P~P~~~~~~~~~~~~~l~~~~~i~~~~-----~~~l~~a~~~~~~~l~~~ 84 (587)
.|+=.|++++..+..+.+.++++=.+.... .+.-++++.+|++.++..
T Consensus 31 DV~Itpq~v~V~~~sg~l~I~~dg~L~inGk~v~L~~~Qqq~~~~Yq~~lr~~ 83 (239)
T PRK10626 31 DVIISPQTVQVVGASGNLVISPDGNVMRNGKQLSLNAAQRQQAKDYQAALRQD 83 (239)
T ss_pred CeEEcCCeEEEEecCCceEEcCCCCEEECCEEecCCHHHHHHHHHHHHHHHHH
Confidence 344456666654444578888764343321 345578889999988775
No 189
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=20.92 E-value=3.8e+02 Score=26.94 Aligned_cols=60 Identities=12% Similarity=0.163 Sum_probs=44.6
Q ss_pred eeeeCCCCCCCChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 044344 183 GLILDTSRNYYGVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGV 262 (587)
Q Consensus 183 G~mlD~aR~f~~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI 262 (587)
|.++.++. -+.+.|+.++.++++.+++.+..-+.|. ...+|.++++++-+.++++||
T Consensus 3 g~~~~~~~------~~~~~~~~~~~~G~~~vel~~~~~~~~~-----------------~~~~~~~~~~~l~~~~~~~gl 59 (273)
T smart00518 3 GAHVSAAG------GLYKAFIEAVDIGARSFQLFLGNPRSWK-----------------GVRLSEETAEKFKEALKENNI 59 (273)
T ss_pred eEEEcccC------cHhHHHHHHHHcCCCEEEEECCCCCCCC-----------------CCCCCHHHHHHHHHHHHHcCC
Confidence 55555553 2567899999999999999875432221 124789999999999999999
Q ss_pred EEE
Q 044344 263 RVL 265 (587)
Q Consensus 263 ~VI 265 (587)
+|.
T Consensus 60 ~ls 62 (273)
T smart00518 60 DVS 62 (273)
T ss_pred CEE
Confidence 875
No 190
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=20.84 E-value=90 Score=31.72 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHHHHHhcCCEEEe
Q 044344 244 QYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 244 ~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
.+|.+++++|.+||+++||..+-
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~s 74 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFS 74 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEE
T ss_pred cCCHHHHHHHHHHHHHcCCEEEE
Confidence 58999999999999999998873
No 191
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=20.63 E-value=2.5e+02 Score=34.08 Aligned_cols=86 Identities=21% Similarity=0.296 Sum_probs=56.6
Q ss_pred ChHHHHHHHHHHHhCCCcEEEEEeeCCCCCC-------ccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHH-hcCCEEE
Q 044344 194 GVDDILRTIKTMSFNKMNVFHWHITDSHSFP-------LVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGL-THGVRVL 265 (587)
Q Consensus 194 ~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr-------~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~-~rgI~VI 265 (587)
|+++.+..+...+...+|++|+-.-..-|-. =+++--|.. .++++.||-+|++.||+-++ +.+|--|
T Consensus 140 pl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~-----~~~~~k~s~eDV~~lV~~l~rewnvlsi 214 (1521)
T KOG3625|consen 140 PLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDF-----SRPNRKYSFEDVGQLVEKLKREWNVLSI 214 (1521)
T ss_pred ChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhh-----hccCCCCCHHHHHHHHHHHHhhcCeeee
Confidence 4566677788888999999987643221110 000001111 13567899999999999886 7788777
Q ss_pred ecCCCCCchhh---HHHhCchhh
Q 044344 266 PEIDSPGHTGS---WAEAYPEIV 285 (587)
Q Consensus 266 PEID~PGH~~a---~~~~~p~l~ 285 (587)
-.| +.-|+.. |+..|||-.
T Consensus 215 ~Dv-V~NHtAnns~WlleHPea~ 236 (1521)
T KOG3625|consen 215 TDV-VYNHTANNSKWLLEHPEAA 236 (1521)
T ss_pred ehh-hhhccccCCchhHhCchhh
Confidence 776 6678754 887888753
No 192
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=20.51 E-value=2e+02 Score=30.24 Aligned_cols=125 Identities=11% Similarity=0.143 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeeCCCCC-CccCC-CCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecCCCCC
Q 044344 195 VDDILRTIKTMSFNKMNVFHWHITDSHSF-PLVLP-SEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEIDSPG 272 (587)
Q Consensus 195 ~~~lk~~Id~ma~~KlN~lh~HltDdq~f-r~e~~-~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID~PG 272 (587)
...+-+.+...+.+|||.|.+-+.||-|- ++++. .+|+-+ ++- =.--||+-+++-|++.||-+|--|=+.-
T Consensus 76 kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~--~sv-----~~f~Di~~~iKkaKe~giY~IARiVvFK 148 (400)
T COG1306 76 KKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYT--KSV-----NKFKDIEPVIKKAKENGIYAIARIVVFK 148 (400)
T ss_pred hhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhh--hcc-----ccccccHHHHHHHHhcCeEEEEEEEEee
Confidence 35566778888999999999999999763 22211 111111 111 1236899999999999999998775543
Q ss_pred chhhHHHhCc-hhhhhcccCcCCCCCcccccccC-----CCCCCcCCCCChhHHHHHHHHHHHHHHh
Q 044344 273 HTGSWAEAYP-EIVTCANKFWWPAESNWTNRLAS-----EPGTGHLNPLNPKTYKILKNVINDIVNL 333 (587)
Q Consensus 273 H~~a~~~~~p-~l~~c~~~~~~~~~~~~~~~~~~-----~~~~~~L~~~~~~t~~fl~~v~~Ev~~l 333 (587)
-+.-+. ..| ++. .+.++.+|...... +....=.|+-++.+++.--.|-+|.++.
T Consensus 149 D~~l~~-~n~fk~a------v~~~gKpw~~~~ngaLrKe~~~ehWVd~y~~~~WeYNvtIAKEa~~f 208 (400)
T COG1306 149 DTILAK-ENPFKIA------VYKDGKPWKAFTNGALRKESDGEHWVDAYDKNLWEYNVTIAKEAAKF 208 (400)
T ss_pred eeeEEe-ecCceEE------EEcCCCcchhhhcccccccccceeeecccchhhhhhhHHHHHHHHHc
Confidence 331110 001 010 01223344431110 0111236788999999999999998873
No 193
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=20.44 E-value=2e+02 Score=28.62 Aligned_cols=68 Identities=12% Similarity=-0.004 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEE
Q 044344 195 VDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVL 265 (587)
Q Consensus 195 ~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VI 265 (587)
.+.++++++.++.++ +.-++++-.-. ++...+|..+...-....-...|.+++.++.+++++.|++++
T Consensus 178 ~~ei~~l~~~l~~l~-~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~g~~~~ 245 (246)
T PRK11145 178 DDSAHRLGEFIKDMG-NIEKIELLPYH--ELGKHKWEAMGEEYKLDGVKPPSKETMERVKGILEQYGHKVM 245 (246)
T ss_pred HHHHHHHHHHHHhcC-CcceEEEecCC--ccchhHHHHcCCcccccCCCCCCHHHHHHHHHHHHHcCCccc
Confidence 468899998888754 33344432110 010011101100000111235799999999999999999874
No 194
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=20.41 E-value=4.7e+02 Score=27.12 Aligned_cols=64 Identities=17% Similarity=0.209 Sum_probs=46.7
Q ss_pred ChHHHHHHHHHHHhCCCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEecCC
Q 044344 194 GVDDILRTIKTMSFNKMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPEID 269 (587)
Q Consensus 194 ~~~~lk~~Id~ma~~KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPEID 269 (587)
+.+.+++.++.+...+.+.+-+.++...+.+. .......+|.++++++++.|+++|+.|.-...
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~------------~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~ 181 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPG------------DPPPDTQFSEEELRAIVDEAHKAGLYVAAHAY 181 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCC------------CCCcccCcCHHHHHHHHHHHHHcCCEEEEEeC
Confidence 46788899999999999999888753221111 00112358999999999999999999886543
No 195
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=20.23 E-value=3.2e+02 Score=28.81 Aligned_cols=24 Identities=8% Similarity=0.036 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCEEEe
Q 044344 243 MQYSPDDVKKIVEFGLTHGVRVLP 266 (587)
Q Consensus 243 ~~YT~~ei~eiv~yA~~rgI~VIP 266 (587)
..++.+++++|++.|+++++-||=
T Consensus 157 ~~~~~~~~~~i~~~a~~~~~~ii~ 180 (356)
T PRK08056 157 LLPERQLLQAIAERCKSLNIALIL 180 (356)
T ss_pred CCCCHHHHHHHHHHHHhcCCEEEE
Confidence 478999999999999999998874
No 196
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.01 E-value=1.8e+02 Score=31.16 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=37.0
Q ss_pred ChHHHHHHHHHHHhC----CCcEEEEEeeCCCCCCccCCCCCccccCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEec
Q 044344 194 GVDDILRTIKTMSFN----KMNVFHWHITDSHSFPLVLPSEPDLAAKGSYGHDMQYSPDDVKKIVEFGLTHGVRVLPE 267 (587)
Q Consensus 194 ~~~~lk~~Id~ma~~----KlN~lh~HltDdq~fr~e~~~~P~Lt~~ga~~~~~~YT~~ei~eiv~yA~~rgI~VIPE 267 (587)
+.+.++++.+.+... |+|.+-+|-. ....| ..-++++++++.++.+++||.|+.-
T Consensus 266 s~e~a~~La~~l~~l~~~~~VnLIPynp~-------~~~~~------------~~ps~e~i~~f~~~L~~~gi~v~vR 324 (348)
T PRK14467 266 SPEDALRLAQLIGKNKKKFKVNLIPFNPD-------PELPY------------ERPELERVYKFQKILWDNGISTFVR 324 (348)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEecCCCC-------CCCCC------------CCCCHHHHHHHHHHHHHCCCcEEEe
Confidence 467888888888764 3444444421 11112 2358899999999999999998754
Done!