BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044346
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 19 IKQGVNLAIHDHSG-SDPCV--FVMMAKEN-----IKIRFIGNNVNPEWNEVFPFSTTYP 70
+ G++LA D G SDP V + +A EN ++ + I +NP+WNE F F
Sbjct: 27 VVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFRVNPS 86
Query: 71 NVPIMLSVCDHDSFTKDD 88
N ++ V D + T+DD
Sbjct: 87 NHRLLFEVFDENRLTRDD 104
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 52 GNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPR 111
G PEWNE F F+ + + + D D T+DD + +A I + + I
Sbjct: 51 GMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAY 110
Query: 112 NAVKDLDLKLTNIECGKLQVQLRY 135
N VKD + K G++ V L +
Sbjct: 111 NVVKDEEYK------GEIWVALSF 128
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 19 IKQGVNLAIHDHSG-SDPCVFVMM---AKENIKIRFIGNNVNPEWNEV-----FPFSTTY 69
I + L D SG SDP V + + K ++ + N+NP WNE FP+
Sbjct: 32 IMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVV 91
Query: 70 PNVPIMLSVCDHDSFTKDDRMKDAKIDI 97
+ + L V D+D F+++D + + I +
Sbjct: 92 QRI-LYLQVLDYDRFSRNDPIGEVSIPL 118
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 19 IKQGVNLAIHDHSG-SDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLS 77
+ + +L D SG SDP + + + ++ + N+NPEWN+VF F + + ++
Sbjct: 19 VLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVT 78
Query: 78 VCDHDS 83
V D D
Sbjct: 79 VFDEDG 84
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 25 LAIHDHSGS-DPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHD 82
L D +GS DP V V + K + + I N+NP W E F F + I + V D D
Sbjct: 29 LQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDED 87
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 19 IKQGVNLAIHDHSG-SDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYPNV 72
++ NL D +G SDP V + + + K + I + +NP+WNE F F +
Sbjct: 22 VRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDK 81
Query: 73 PIMLSV--CDHDSFTKDDRMKDAKIDIREYMK 102
LSV D D T++D M + E MK
Sbjct: 82 DRRLSVEIWDWDRTTRNDFMGSLSFGVSELMK 113
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 19 IKQGVNLAIHDHSG-SDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYPNV 72
++ NL D +G SDP V + + + K + I + +NP+WNE F F +
Sbjct: 23 VRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDK 82
Query: 73 PIMLSV--CDHDSFTKDDRMKDAKIDIREYMK 102
LSV D D T++D M + E MK
Sbjct: 83 DRRLSVEIWDWDRTTRNDFMGSLSFGVSELMK 114
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 34.3 bits (77), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 19 IKQGVNLAIHDHSG-SDPCVFVMM-----AKENIKIRFIGNNVNPEWNEVFPFSTTYPNV 72
++ NL D +G SDP V + + ++ K + I +++NPEWNE F F +
Sbjct: 178 VRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDK 237
Query: 73 PIMLSV--CDHDSFTKDDRMKDAKIDIREYMK 102
LSV D D +++D M I E K
Sbjct: 238 DRRLSVEIWDWDLTSRNDFMGSLSFGISELQK 269
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 34.3 bits (77), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 22 GVNLAIHDHSG-SDPCVFVMM------AKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPI 74
G+ LA D G SDP V V + +++ + I ++NP+WNE F +
Sbjct: 29 GIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRL 88
Query: 75 MLSVCDHDSFTKDDRMKDAKIDIREY 100
+ V D + T+DD + ++D+ Y
Sbjct: 89 LFEVFDENRLTRDDFL--GQVDVPLY 112
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 22 GVNLAIHDHSG-SDPCVFVMMAKE------NIKIRFIGNNVNPEWNEVFPFSTTYPNVPI 74
G+ LA D G SDP V V + +++ + I ++NP+WNE F I
Sbjct: 17 GIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRI 76
Query: 75 MLSVCDHDSFTKDDRMKDAKIDIREY 100
+ V D + T+DD + ++D+ Y
Sbjct: 77 LFEVFDENRLTRDDFL--GQVDVPLY 100
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 19 IKQGVNLAIHDHSG-SDPCVFVMM---AKENIKIRFIGNNVNPEWNEVFPFSTTYPNVP- 73
I Q L D G SDP V V + K+ + + +NP +NE F F Y +
Sbjct: 25 IIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAG 84
Query: 74 --IMLSVCDHDSFTKDDRMKDAKI 95
++++V D D F+K D + + K+
Sbjct: 85 KTLVMAVYDFDRFSKHDIIGEFKV 108
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 55 VNPEWNEVFPFSTTYPN---VPIMLSVCDHDSFTKDDRM 90
+NP +NE F F + V ++++V D+D K+D +
Sbjct: 198 LNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAI 236
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 33.9 bits (76), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 19/98 (19%)
Query: 19 IKQGVNLAIHDHSG-SDPCVFVMM--------------AKENIKIRFIGNNVNPEWNEVF 63
I Q NL D++G SDP V V + A+ + +++ ++NPEWN+
Sbjct: 24 ILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTV 83
Query: 64 PFST----TYPNVPIMLSVCDHDSFTKDDRMKDAKIDI 97
+ + + ++V D+D F+ +D + + ID+
Sbjct: 84 IYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDL 121
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 33.9 bits (76), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 19 IKQGVNLAIHDHSG-SDPCVFVMM---AKENIKIRFIGNNVNPEWNEVFPFSTTYPNV-- 72
I Q L D G SDP V V + K+ + + +NP +NE F F Y +
Sbjct: 23 IIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGG 82
Query: 73 -PIMLSVCDHDSFTKDDRMKDAKI 95
++++V D D F+K D + + K+
Sbjct: 83 KTLVMAVYDFDRFSKHDIIGEFKV 106
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 33.9 bits (76), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 19 IKQGVNLAIHDHSG-SDPCVFVMM---AKENIKIRFIGNNVNPEWNEVFPFSTTYPNV-- 72
I Q L D G SDP V V + K+ + + +NP +NE F F Y +
Sbjct: 48 IIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGG 107
Query: 73 -PIMLSVCDHDSFTKDDRMKDAKI 95
++++V D D F+K D + + K+
Sbjct: 108 KTLVMAVYDFDRFSKHDIIGEFKV 131
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 33.9 bits (76), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 19 IKQGVNLAIHDHSG-SDPCVFVMM---AKENIKIRFIGNNVNPEWNEVFPFSTTYPNV-- 72
I Q L D G SDP V V + K+ + + +NP +NE F F Y +
Sbjct: 40 IIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGG 99
Query: 73 -PIMLSVCDHDSFTKDDRMKDAKI 95
++++V D D F+K D + + K+
Sbjct: 100 KTLVMAVYDFDRFSKHDIIGEFKV 123
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 33.9 bits (76), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 19 IKQGVNLAIHDHSG-SDPCVFVMM---AKENIKIRFIGNNVNPEWNEVFPFSTTYPNV-- 72
I Q L D G SDP V V + K+ + + +NP +NE F F Y +
Sbjct: 40 IIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGG 99
Query: 73 -PIMLSVCDHDSFTKDDRMKDAKI 95
++++V D D F+K D + + K+
Sbjct: 100 KTLVMAVYDFDRFSKHDIIGEFKV 123
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 33.5 bits (75), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 19 IKQGVNLAIHDHSG-SDPCVFVMM-----AKENIKIRFIGNNVNPEWNEVFPFSTTYPNV 72
++ NL D +G SDP V + + ++ K + I ++NPEWNE F F +
Sbjct: 37 VRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDK 96
Query: 73 PIMLSV--CDHDSFTKDDRMKDAKIDIREYMK 102
LSV D D +++D M I E K
Sbjct: 97 DRRLSVEIWDWDLTSRNDFMGSLSFGISELQK 128
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 32.3 bits (72), Expect = 0.13, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 33 SDPCVFVMMAKENIKIRFIGNNVNPEWNE--VFPFSTTYPNVPIMLSVCDHDSFTKDDRM 90
S+P + M ++ R I + +NP+WN F Y +V + L++ D D F+ DD +
Sbjct: 408 SNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDV-LCLTLFDRDQFSPDDFL 466
Query: 91 KDAKIDI 97
+I +
Sbjct: 467 GRTEIPV 473
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 24/129 (18%)
Query: 19 IKQGVNLAIHDHSG-SDPCVFVMMAKE-----NIKIRFIGNNVNPEWNEVFPFSTTYPNV 72
+ + NL D +G SDP V + + + K R + +NP WNE F F+ +V
Sbjct: 26 VGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLKPGDV 85
Query: 73 PIMLS--VCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQ 130
LS V D D +++D M + E +K A D KL N E G+
Sbjct: 86 ERRLSVEVWDWDRTSRNDFMGAMSFGVSELLK----------APVDGWYKLLNQEEGE-- 133
Query: 131 VQLRYCNLP 139
Y N+P
Sbjct: 134 ----YYNVP 138
>pdb|1QAS|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAS|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta 1
pdb|1QAT|A Chain A, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
pdb|1QAT|B Chain B, 1-Phosphatidylinositol-4,5-Bisphosphate Phosphodiesterase
Delta Complex With Samarium (Iii) Chloride
Length = 622
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 53 NNVNPEWNEVFPFSTTYPNVPIM-LSVCDHDSFTKDDRMKDAKI 95
N NP W+ F F T P++ ++ V D+DS +K+D + + I
Sbjct: 544 NGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTI 587
>pdb|1DJG|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJG|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Lanthanum
pdb|1DJH|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJH|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Barium
pdb|1DJI|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJI|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Calcium
pdb|1DJW|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJW|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2-Methylene-1,2-Cyclic-
Monophosphonate
pdb|1DJX|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJX|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-1,4,5-Trisphosphate
pdb|1DJY|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJY|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-2,4,5-Trisphosphate
pdb|1DJZ|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|1DJZ|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Complexed With Inositol-4,5-Bisphosphate
pdb|2ISD|A Chain A, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
pdb|2ISD|B Chain B, Phosphoinositide-Specific Phospholipase C-Delta1 From Rat
Length = 624
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 53 NNVNPEWNEVFPFSTTYPNVPIM-LSVCDHDSFTKDDRMKDAKI 95
N NP W+ F F T P++ ++ V D+DS +K+D + + I
Sbjct: 546 NGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTI 589
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 19 IKQGVNLAIHDHSG-SDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYPNV 72
++ NL D +G SDP V + + + K + I + +NP+WNE F F +
Sbjct: 24 VRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDK 83
Query: 73 PIMLSV--CDHDSFTKDD 88
LSV D D T++D
Sbjct: 84 DRRLSVEIWDWDRTTRND 101
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 33 SDPCVFVMM----AKEN-IKIRFIGNNVNPEWNEVFPF----STTYPNVPIMLSVCDHDS 83
+DP V + + +K N ++ + + N NP WNE + + +SVCD D
Sbjct: 50 ADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDK 109
Query: 84 FTKDDRMKDAKIDIREYMKDVKINL 108
F ++ + + + +++ + + N
Sbjct: 110 FGHNEFIGETRFSLKKLKANQRKNF 134
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 29.6 bits (65), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 33 SDPCVFVMM----AKEN-IKIRFIGNNVNPEWNEVFPF----STTYPNVPIMLSVCDHDS 83
+DP V + + +K N ++ + + N NP WNE + + +SVCD D
Sbjct: 48 ADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDK 107
Query: 84 FTKDDRMKDAKIDIREYMKDVKINL 108
F ++ + + + +++ + + N
Sbjct: 108 FGHNEFIGETRFSLKKLKANQRKNF 132
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 34 DPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLS------VCDHDSFTKD 87
DP V V+ E K + + N +NP WNE+ F +P+ S V D ++ ++
Sbjct: 28 DPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLR--GIPLDFSSSLGIIVKDFETIGQN 85
Query: 88 DRMKDAKIDIREYMKD 103
+ A + +++ D
Sbjct: 86 KLIGTATVALKDLTGD 101
>pdb|4I78|C Chain C, Crystal Structure Of A Subtype H17 Hemagglutinin Homologue
From A/little Yellow-shouldered Bat/guatemala/060/2010
(h17n10)
pdb|4I78|D Chain D, Crystal Structure Of A Subtype H17 Hemagglutinin Homologue
From A/little Yellow-shouldered Bat/guatemala/060/2010
(h17n10)
Length = 181
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 88 DRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRYCNLPGSKG-FIM 146
DR+ DA +DI Y ++ + LE + D + N+ K++ QL+ + G F++
Sbjct: 82 DRVDDALLDIWSYNTELLVLLENERTLDFHDANVKNL-FEKVKAQLKDNAIDEGNGCFLL 140
Query: 147 FYECSSLC 154
++C++ C
Sbjct: 141 LHKCNNSC 148
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 55 VNPEWNEVFPFSTTYPN---VPIMLSVCDHDSFTKDDRM 90
+NP +NE F F + V ++++V D+D K+D +
Sbjct: 73 LNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAI 111
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 47 KIRFIGNNVNPEWNEVFPF 65
+ R N++NP WNE F F
Sbjct: 44 RTRHFNNDINPVWNETFEF 62
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 47 KIRFIGNNVNPEWNEVFPF 65
+ R N++NP WNE F F
Sbjct: 59 RTRHFNNDINPVWNETFEF 77
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 47 KIRFIGNNVNPEWNEVFPF 65
+ R N++NP WNE F F
Sbjct: 59 RTRHFNNDINPVWNETFEF 77
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 55 VNPEWNEVFPFSTTYPN---VPIMLSVCDHDSFTKDDRM 90
+NP +NE F F + V ++++V D+D K+D +
Sbjct: 66 LNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAI 104
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 55 VNPEWNEVFPFSTTYPN---VPIMLSVCDHDSFTKDDRM 90
+NP +NE F F + V ++++V D+D K+D +
Sbjct: 65 LNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAI 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,421,246
Number of Sequences: 62578
Number of extensions: 165566
Number of successful extensions: 421
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 402
Number of HSP's gapped (non-prelim): 38
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)