Query 044346
Match_columns 159
No_of_seqs 123 out of 1459
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 13:45:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044346.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044346hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1030 Predicted Ca2+-depende 99.9 1.4E-26 3E-31 155.6 12.4 135 9-143 2-167 (168)
2 cd04016 C2_Tollip C2 domain pr 99.9 2.5E-25 5.3E-30 145.7 14.3 115 12-135 1-121 (121)
3 cd08375 C2_Intersectin C2 doma 99.9 9.4E-24 2E-28 141.3 15.5 130 2-135 4-135 (136)
4 cd08682 C2_Rab11-FIP_classI C2 99.9 2.1E-23 4.5E-28 138.1 12.7 113 15-134 1-126 (126)
5 cd04042 C2A_MCTP_PRT C2 domain 99.9 8.1E-23 1.7E-27 134.4 14.4 114 14-136 1-120 (121)
6 cd08376 C2B_MCTP_PRT C2 domain 99.9 1.6E-22 3.6E-27 131.9 14.4 113 14-136 1-115 (116)
7 cd08681 C2_fungal_Inn1p-like C 99.9 1E-22 2.3E-27 133.2 12.1 113 13-135 1-118 (118)
8 cd08678 C2_C21orf25-like C2 do 99.9 3.9E-22 8.4E-27 132.0 14.0 115 15-139 1-123 (126)
9 cd08391 C2A_C2C_Synaptotagmin_ 99.9 4.2E-22 9.2E-27 130.7 13.6 113 13-135 1-121 (121)
10 cd08379 C2D_MCTP_PRT_plant C2 99.9 3.8E-22 8.3E-27 131.5 13.0 92 15-106 2-103 (126)
11 cd04044 C2A_Tricalbin-like C2 99.9 5.8E-22 1.3E-26 130.6 13.0 120 12-137 1-124 (124)
12 cd08401 C2A_RasA2_RasA3 C2 dom 99.9 7E-22 1.5E-26 129.8 13.0 112 15-135 2-121 (121)
13 cd04038 C2_ArfGAP C2 domain pr 99.9 1.1E-21 2.4E-26 132.4 14.1 96 12-107 1-96 (145)
14 cd04036 C2_cPLA2 C2 domain pre 99.9 1.1E-21 2.4E-26 128.6 13.4 111 15-135 2-117 (119)
15 cd04024 C2A_Synaptotagmin-like 99.9 1.7E-21 3.7E-26 129.1 14.1 117 13-135 1-128 (128)
16 cd04022 C2A_MCTP_PRT_plant C2 99.9 9.5E-22 2.1E-26 130.3 12.7 115 14-136 1-126 (127)
17 cd04019 C2C_MCTP_PRT_plant C2 99.9 4E-21 8.8E-26 130.5 14.1 117 15-136 2-132 (150)
18 KOG1028 Ca2+-dependent phospho 99.9 3.4E-21 7.4E-26 149.8 14.7 134 10-154 164-311 (421)
19 cd08377 C2C_MCTP_PRT C2 domain 99.9 7E-21 1.5E-25 124.6 14.0 112 13-135 1-118 (119)
20 cd04046 C2_Calpain C2 domain p 99.9 1.7E-20 3.7E-25 124.1 15.5 117 11-137 1-123 (126)
21 cd04033 C2_NEDD4_NEDD4L C2 dom 99.9 8.1E-21 1.7E-25 126.7 12.5 120 14-136 1-133 (133)
22 cd04054 C2A_Rasal1_RasA4 C2 do 99.9 1.2E-20 2.6E-25 124.0 13.1 112 15-134 2-120 (121)
23 cd08400 C2_Ras_p21A1 C2 domain 99.9 3.5E-20 7.5E-25 122.6 15.1 113 13-137 4-124 (126)
24 cd04025 C2B_RasA1_RasA4 C2 dom 99.9 1.4E-20 3.1E-25 123.9 13.2 111 14-133 1-122 (123)
25 cd04015 C2_plant_PLD C2 domain 99.9 3.4E-20 7.3E-25 127.1 14.8 117 10-136 4-158 (158)
26 cd04017 C2D_Ferlin C2 domain f 99.9 5.6E-20 1.2E-24 123.0 14.8 118 14-137 2-133 (135)
27 cd04014 C2_PKC_epsilon C2 doma 99.9 5.7E-20 1.2E-24 122.5 14.2 115 12-136 3-129 (132)
28 cd04039 C2_PSD C2 domain prese 99.8 2.7E-20 5.8E-25 119.9 12.0 93 13-105 1-100 (108)
29 cd08677 C2A_Synaptotagmin-13 C 99.8 1.8E-20 3.8E-25 121.4 11.1 90 10-101 11-107 (118)
30 cd08395 C2C_Munc13 C2 domain t 99.8 4.1E-20 8.9E-25 120.8 12.2 100 14-122 1-111 (120)
31 cd08373 C2A_Ferlin C2 domain f 99.8 1.3E-19 2.9E-24 120.0 14.2 114 19-142 2-122 (127)
32 cd04028 C2B_RIM1alpha C2 domai 99.8 6.8E-20 1.5E-24 123.5 12.4 103 12-123 28-138 (146)
33 cd08381 C2B_PI3K_class_II C2 d 99.8 5.2E-20 1.1E-24 121.1 11.4 92 12-103 12-112 (122)
34 cd08378 C2B_MCTP_PRT_plant C2 99.8 1.1E-19 2.3E-24 119.4 12.9 113 15-135 2-119 (121)
35 cd04043 C2_Munc13_fungal C2 do 99.8 3.4E-19 7.3E-24 117.8 15.0 115 14-136 2-121 (126)
36 cd04027 C2B_Munc13 C2 domain s 99.8 1.5E-19 3.2E-24 119.8 13.0 109 14-133 2-127 (127)
37 cd04029 C2A_SLP-4_5 C2 domain 99.8 1.6E-19 3.4E-24 119.3 11.7 97 10-106 12-118 (125)
38 cd08387 C2A_Synaptotagmin-8 C2 99.8 1.6E-19 3.4E-24 119.1 11.7 104 10-122 13-123 (124)
39 cd04041 C2A_fungal C2 domain f 99.8 1.2E-19 2.6E-24 117.5 10.8 91 13-103 1-100 (111)
40 cd04050 C2B_Synaptotagmin-like 99.8 2.3E-19 5E-24 115.1 12.0 100 14-123 1-102 (105)
41 cd08385 C2A_Synaptotagmin-1-5- 99.8 2.5E-19 5.5E-24 118.1 11.8 103 11-122 14-123 (124)
42 cd08690 C2_Freud-1 C2 domain f 99.8 1.4E-18 2.9E-23 118.1 15.5 121 15-144 4-145 (155)
43 cd08382 C2_Smurf-like C2 domai 99.8 3.8E-19 8.2E-24 117.2 12.5 88 15-103 2-93 (123)
44 cd08393 C2A_SLP-1_2 C2 domain 99.8 1.4E-19 3E-24 119.6 10.3 93 11-103 13-115 (125)
45 cd08392 C2A_SLP-3 C2 domain fi 99.8 3.4E-19 7.3E-24 118.1 11.4 92 11-102 13-114 (128)
46 cd08688 C2_KIAA0528-like C2 do 99.8 3.8E-19 8.2E-24 115.0 10.9 88 15-102 1-94 (110)
47 cd04010 C2B_RasA3 C2 domain se 99.8 4.6E-19 9.9E-24 120.0 11.4 89 14-103 1-110 (148)
48 cd04045 C2C_Tricalbin-like C2 99.8 1.3E-18 2.7E-23 114.2 13.0 91 13-103 1-93 (120)
49 cd04049 C2_putative_Elicitor-r 99.8 1.4E-18 2.9E-23 114.7 13.3 94 13-106 1-100 (124)
50 cd08388 C2A_Synaptotagmin-4-11 99.8 1.2E-18 2.5E-23 115.6 12.3 92 11-102 14-114 (128)
51 cd04051 C2_SRC2_like C2 domain 99.8 7.6E-19 1.7E-23 116.0 11.3 114 14-131 1-125 (125)
52 cd08685 C2_RGS-like C2 domain 99.8 6E-19 1.3E-23 115.5 10.3 93 11-103 10-110 (119)
53 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.8 8.3E-19 1.8E-23 120.6 11.2 96 8-103 22-127 (162)
54 cd04032 C2_Perforin C2 domain 99.8 9.3E-19 2E-23 115.5 11.0 92 10-102 25-119 (127)
55 cd08680 C2_Kibra C2 domain fou 99.8 8.9E-19 1.9E-23 115.3 10.7 93 10-102 11-113 (124)
56 cd08394 C2A_Munc13 C2 domain f 99.8 3.4E-18 7.3E-23 111.9 13.0 87 13-103 2-88 (127)
57 cd04031 C2A_RIM1alpha C2 domai 99.8 2.2E-18 4.8E-23 113.7 11.5 89 11-99 14-112 (125)
58 cd04021 C2_E3_ubiquitin_ligase 99.8 9.8E-18 2.1E-22 110.7 14.2 115 13-133 2-124 (125)
59 cd04018 C2C_Ferlin C2 domain t 99.8 2.3E-18 5E-23 116.8 11.4 89 15-103 2-107 (151)
60 cd08386 C2A_Synaptotagmin-7 C2 99.8 4.3E-18 9.3E-23 112.4 12.4 94 11-104 14-115 (125)
61 cd04030 C2C_KIAA1228 C2 domain 99.8 2.8E-18 6.1E-23 113.5 11.5 93 11-103 14-117 (127)
62 cd08389 C2A_Synaptotagmin-14_1 99.8 3.4E-18 7.4E-23 112.8 11.8 103 10-122 13-123 (124)
63 cd04011 C2B_Ferlin C2 domain s 99.8 3.7E-18 8E-23 110.5 11.7 102 12-122 3-109 (111)
64 cd04040 C2D_Tricalbin-like C2 99.8 7.2E-18 1.6E-22 109.7 12.4 99 15-122 1-102 (115)
65 cd04052 C2B_Tricalbin-like C2 99.8 6.6E-18 1.4E-22 109.3 12.1 99 30-137 10-110 (111)
66 cd08691 C2_NEDL1-like C2 domai 99.8 1.5E-17 3.2E-22 111.2 13.3 112 14-133 2-136 (137)
67 cd08390 C2A_Synaptotagmin-15-1 99.8 8E-18 1.7E-22 110.7 11.8 104 10-122 11-122 (123)
68 cd08521 C2A_SLP C2 domain firs 99.8 7.8E-18 1.7E-22 110.8 11.7 94 10-103 11-114 (123)
69 cd04009 C2B_Munc13-like C2 dom 99.8 4.8E-18 1E-22 113.4 10.6 92 11-102 14-118 (133)
70 cd04037 C2E_Ferlin C2 domain f 99.8 1.7E-17 3.6E-22 109.5 11.2 89 14-102 1-93 (124)
71 cd04026 C2_PKC_alpha_gamma C2 99.8 1.3E-17 2.8E-22 110.9 10.8 107 13-129 13-127 (131)
72 cd08676 C2A_Munc13-like C2 dom 99.8 1.4E-17 3E-22 113.1 10.9 90 8-101 23-143 (153)
73 PLN03200 cellulose synthase-in 99.8 5.8E-18 1.3E-22 148.5 10.7 122 5-137 1972-2101(2102)
74 cd08407 C2B_Synaptotagmin-13 C 99.7 2E-17 4.4E-22 110.7 10.2 89 11-99 13-112 (138)
75 cd08406 C2B_Synaptotagmin-12 C 99.7 2.1E-17 4.6E-22 110.5 10.3 89 11-99 13-110 (136)
76 cd08383 C2A_RasGAP C2 domain ( 99.7 8E-17 1.7E-21 105.0 12.7 107 15-135 2-117 (117)
77 PLN03008 Phospholipase D delta 99.7 1.1E-16 2.3E-21 130.8 15.7 118 11-138 12-179 (868)
78 cd08675 C2B_RasGAP C2 domain s 99.7 2.8E-17 6.1E-22 110.1 10.4 100 15-123 1-120 (137)
79 cd04013 C2_SynGAP_like C2 doma 99.7 1.3E-16 2.8E-21 107.4 13.4 114 11-137 9-140 (146)
80 cd08384 C2B_Rabphilin_Doc2 C2 99.7 2.6E-17 5.6E-22 109.8 10.0 90 10-99 10-108 (133)
81 cd08404 C2B_Synaptotagmin-4 C2 99.7 5.9E-17 1.3E-21 108.5 10.9 89 11-99 13-110 (136)
82 cd08402 C2B_Synaptotagmin-1 C2 99.7 4.4E-17 9.5E-22 109.1 9.4 91 10-100 12-111 (136)
83 KOG0696 Serine/threonine prote 99.7 3.5E-18 7.6E-23 130.0 4.3 92 12-103 179-278 (683)
84 cd04048 C2A_Copine C2 domain f 99.7 1E-16 2.2E-21 105.1 10.3 87 18-104 5-104 (120)
85 cd08408 C2B_Synaptotagmin-14_1 99.7 1E-16 2.2E-21 107.5 10.0 91 10-100 12-112 (138)
86 cd08405 C2B_Synaptotagmin-7 C2 99.7 1E-16 2.2E-21 107.3 9.9 90 11-100 13-111 (136)
87 cd08686 C2_ABR C2 domain in th 99.7 4.7E-16 1E-20 100.5 12.4 80 15-99 1-92 (118)
88 cd08403 C2B_Synaptotagmin-3-5- 99.7 1.3E-16 2.8E-21 106.6 10.2 90 10-99 11-109 (134)
89 KOG2059 Ras GTPase-activating 99.7 5E-17 1.1E-21 129.1 8.9 134 13-156 5-146 (800)
90 cd08410 C2B_Synaptotagmin-17 C 99.7 1.6E-16 3.5E-21 106.2 10.0 87 11-97 12-107 (135)
91 cd00276 C2B_Synaptotagmin C2 d 99.7 5.4E-17 1.2E-21 108.2 7.7 88 12-99 13-109 (134)
92 cd00275 C2_PLC_like C2 domain 99.7 1.2E-15 2.6E-20 100.9 13.8 110 13-135 2-127 (128)
93 cd08692 C2B_Tac2-N C2 domain s 99.7 2.1E-16 4.4E-21 104.8 10.0 90 10-99 11-109 (135)
94 cd04035 C2A_Rabphilin_Doc2 C2 99.7 5.1E-16 1.1E-20 102.2 11.7 92 11-103 13-114 (123)
95 cd08409 C2B_Synaptotagmin-15 C 99.7 3E-16 6.6E-21 105.2 8.6 90 11-100 13-110 (137)
96 cd04047 C2B_Copine C2 domain s 99.6 1.2E-15 2.7E-20 98.4 8.8 85 17-102 4-100 (110)
97 KOG1011 Neurotransmitter relea 99.6 9.5E-16 2.1E-20 121.6 8.5 119 6-135 288-423 (1283)
98 PF00168 C2: C2 domain; Inter 99.6 5E-15 1.1E-19 90.6 8.3 80 15-94 1-85 (85)
99 smart00239 C2 Protein kinase C 99.5 5.6E-13 1.2E-17 83.5 10.7 89 15-103 2-95 (101)
100 COG5038 Ca2+-dependent lipid-b 99.5 9.8E-13 2.1E-17 110.0 13.7 140 8-153 431-591 (1227)
101 cd00030 C2 C2 domain. The C2 d 99.5 1.1E-12 2.4E-17 81.8 10.7 87 15-101 1-90 (102)
102 PLN02270 phospholipase D alpha 99.4 7.8E-12 1.7E-16 102.6 14.9 120 10-139 5-151 (808)
103 cd08374 C2F_Ferlin C2 domain s 99.4 3.8E-12 8.3E-17 84.3 9.9 88 15-102 2-123 (133)
104 PLN02223 phosphoinositide phos 99.4 2.1E-11 4.4E-16 96.5 12.8 92 12-103 408-511 (537)
105 KOG1028 Ca2+-dependent phospho 99.3 5.9E-12 1.3E-16 98.4 9.4 89 11-99 296-393 (421)
106 COG5038 Ca2+-dependent lipid-b 99.3 9.2E-12 2E-16 104.3 9.7 102 4-105 1031-1135(1227)
107 PLN02952 phosphoinositide phos 99.3 2.4E-10 5.2E-15 92.1 13.8 92 12-103 469-573 (599)
108 PLN02222 phosphoinositide phos 99.2 7.1E-10 1.5E-14 89.1 14.3 92 12-103 451-555 (581)
109 PLN02230 phosphoinositide phos 99.2 1.8E-10 3.8E-15 92.7 10.5 92 12-103 468-572 (598)
110 KOG0169 Phosphoinositide-speci 99.2 3.1E-10 6.6E-15 92.0 11.6 114 14-137 617-745 (746)
111 KOG1031 Predicted Ca2+-depende 99.2 2.3E-10 5E-15 90.6 10.3 125 12-136 2-136 (1169)
112 PLN02228 Phosphoinositide phos 99.2 1.1E-09 2.4E-14 87.8 14.0 114 12-137 430-562 (567)
113 KOG1013 Synaptic vesicle prote 99.1 2.7E-11 5.8E-16 89.6 1.8 136 12-156 92-248 (362)
114 KOG1264 Phospholipase C [Lipid 99.1 1.1E-09 2.3E-14 89.5 9.4 91 13-103 1065-1163(1267)
115 KOG1328 Synaptic vesicle prote 99.0 5.9E-11 1.3E-15 95.6 1.6 90 13-102 947-1049(1103)
116 cd08689 C2_fungal_Pkc1p C2 dom 99.0 6.2E-09 1.3E-13 65.6 8.2 84 15-103 1-89 (109)
117 PLN02352 phospholipase D epsil 98.9 1E-07 2.2E-12 78.6 14.3 113 9-138 6-132 (758)
118 KOG1328 Synaptic vesicle prote 98.8 5.3E-10 1.2E-14 90.2 0.2 115 12-136 113-301 (1103)
119 KOG1326 Membrane-associated pr 98.8 3.8E-09 8.3E-14 87.7 4.4 91 10-100 610-704 (1105)
120 KOG2059 Ras GTPase-activating 98.6 6.8E-08 1.5E-12 78.0 6.2 107 21-136 139-276 (800)
121 KOG0905 Phosphoinositide 3-kin 98.6 4.6E-08 1E-12 82.8 5.0 96 11-106 1522-1627(1639)
122 PLN02964 phosphatidylserine de 98.2 3.4E-06 7.4E-11 69.1 6.9 90 8-103 49-140 (644)
123 KOG3837 Uncharacterized conser 98.2 2E-06 4.4E-11 66.0 4.4 118 15-141 369-508 (523)
124 KOG1013 Synaptic vesicle prote 98.1 4.8E-06 1E-10 62.2 5.4 86 11-96 231-325 (362)
125 cd08683 C2_C2cd3 C2 domain fou 98.0 3.2E-05 7E-10 50.6 6.3 89 15-103 1-133 (143)
126 cd08684 C2A_Tac2-N C2 domain f 97.9 1.9E-05 4E-10 48.2 4.4 84 17-102 3-94 (103)
127 KOG1011 Neurotransmitter relea 97.9 7.3E-05 1.6E-09 60.8 8.5 93 14-106 1126-1229(1283)
128 KOG2060 Rab3 effector RIM1 and 97.9 6.3E-06 1.4E-10 62.6 2.1 96 8-103 264-367 (405)
129 PF15627 CEP76-C2: CEP76 C2 do 97.8 0.0011 2.3E-08 45.1 11.8 124 11-139 7-153 (156)
130 KOG1327 Copine [Signal transdu 97.6 0.00011 2.5E-09 58.6 5.6 82 20-102 143-236 (529)
131 KOG1326 Membrane-associated pr 97.6 1.4E-05 3E-10 67.2 -0.3 84 14-97 207-301 (1105)
132 PF12416 DUF3668: Cep120 prote 97.2 0.015 3.3E-07 44.6 11.9 115 15-138 2-134 (340)
133 cd08687 C2_PKN-like C2 domain 97.1 0.015 3.2E-07 35.9 8.8 85 31-135 7-92 (98)
134 cd08398 C2_PI3K_class_I_alpha 96.8 0.026 5.7E-07 38.6 9.7 87 12-101 7-107 (158)
135 cd08693 C2_PI3K_class_I_beta_d 96.7 0.033 7.2E-07 38.7 9.7 89 12-101 7-121 (173)
136 KOG1327 Copine [Signal transdu 96.7 0.0097 2.1E-07 47.9 7.5 98 45-153 42-148 (529)
137 cd08397 C2_PI3K_class_III C2 d 96.6 0.013 2.8E-07 40.2 7.0 70 31-100 28-107 (159)
138 cd08380 C2_PI3K_like C2 domain 96.6 0.022 4.9E-07 38.8 7.9 90 12-101 7-108 (156)
139 KOG1265 Phospholipase C [Lipid 96.5 0.0066 1.4E-07 51.3 5.6 84 12-102 702-796 (1189)
140 cd04012 C2A_PI3K_class_II C2 d 96.5 0.057 1.2E-06 37.4 9.5 105 11-119 6-134 (171)
141 KOG1452 Predicted Rho GTPase-a 96.2 0.014 3.1E-07 43.9 5.4 119 9-138 47-169 (442)
142 PF10358 NT-C2: N-terminal C2 95.8 0.3 6.5E-06 32.5 13.4 121 10-140 4-139 (143)
143 cd08399 C2_PI3K_class_I_gamma 95.3 0.41 8.9E-06 33.5 9.7 88 13-101 10-123 (178)
144 cd08695 C2_Dock-B C2 domains f 94.6 0.82 1.8E-05 32.3 9.6 55 45-99 54-113 (189)
145 smart00142 PI3K_C2 Phosphoinos 94.1 0.75 1.6E-05 28.8 7.9 69 15-83 13-92 (100)
146 PF11618 DUF3250: Protein of u 93.6 0.83 1.8E-05 29.2 7.5 94 36-136 2-105 (107)
147 PF00792 PI3K_C2: Phosphoinosi 93.4 0.53 1.1E-05 31.5 6.7 55 47-101 23-86 (142)
148 cd08694 C2_Dock-A C2 domains f 93.3 2.1 4.5E-05 30.4 9.8 55 44-98 53-114 (196)
149 PF14429 DOCK-C2: C2 domain in 92.8 0.49 1.1E-05 33.1 6.0 55 45-99 60-120 (184)
150 PF15625 CC2D2AN-C2: CC2D2A N- 92.0 1.6 3.5E-05 30.1 7.7 69 32-101 36-107 (168)
151 cd08679 C2_DOCK180_related C2 88.7 2.4 5.2E-05 29.5 6.4 52 48-99 56-115 (178)
152 KOG0694 Serine/threonine prote 88.0 0.24 5.1E-06 41.3 1.1 95 31-136 26-121 (694)
153 cd08696 C2_Dock-C C2 domains f 86.5 3.6 7.7E-05 28.9 6.1 56 44-99 54-118 (179)
154 PTZ00447 apical membrane antig 85.8 13 0.00029 29.0 9.1 94 32-133 73-170 (508)
155 cd08697 C2_Dock-D C2 domains f 85.4 5 0.00011 28.3 6.4 56 44-99 56-123 (185)
156 PF07162 B9-C2: Ciliary basal 66.8 39 0.00084 23.2 9.6 75 18-97 7-101 (168)
157 KOG1329 Phospholipase D1 [Lipi 64.8 11 0.00024 32.8 4.1 71 33-103 138-210 (887)
158 KOG4269 Rac GTPase-activating 63.6 4.5 9.6E-05 35.2 1.6 88 7-99 753-855 (1112)
159 KOG0904 Phosphatidylinositol 3 63.1 28 0.0006 30.6 6.1 67 13-81 343-421 (1076)
160 KOG4028 Uncharacterized conser 62.2 7.7 0.00017 25.7 2.2 25 72-96 74-98 (175)
161 PF14909 SPATA6: Spermatogenes 55.2 62 0.0013 21.8 8.8 85 15-102 4-101 (140)
162 PF01060 DUF290: Transthyretin 48.2 38 0.00082 20.1 3.5 29 70-98 10-38 (80)
163 KOG0906 Phosphatidylinositol 3 45.0 22 0.00048 30.2 2.7 43 57-99 77-123 (843)
164 KOG3543 Ca2+-dependent activat 39.5 2.5E+02 0.0054 24.2 8.8 80 14-95 342-424 (1218)
165 PF10409 PTEN_C2: C2 domain of 25.3 2E+02 0.0042 18.6 9.5 86 14-99 5-96 (134)
166 KOG2419 Phosphatidylserine dec 23.6 21 0.00046 30.2 -0.5 32 31-62 303-334 (975)
167 KOG4027 Uncharacterized conser 22.0 2.6E+02 0.0057 19.4 4.4 40 58-97 65-108 (187)
No 1
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.94 E-value=1.4e-26 Score=155.64 Aligned_cols=135 Identities=40% Similarity=0.723 Sum_probs=117.2
Q ss_pred cccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCC
Q 044346 9 RTSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKD 87 (159)
Q Consensus 9 ~~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d 87 (159)
....|.|+|.|.+|.+|..+| .+.+||||.+.+++++.+|+++.+++||+|||.|.|.+..+...|+++|||+|.++.|
T Consensus 2 ~~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~d 81 (168)
T KOG1030|consen 2 EMLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSD 81 (168)
T ss_pred CccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcc
Confidence 467899999999999999999 5999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEeCccchhhcccC-CC-----------------------------CCceeeeEEeecCCCcccEEEEEEEEEe
Q 044346 88 DRMKDAKIDIREYMKDVKIN-LE-----------------------------PRNAVKDLDLKLTNIECGKLQVQLRYCN 137 (159)
Q Consensus 88 ~~lG~~~i~l~~l~~~~~~~-~~-----------------------------~~~~~~~~~~~l~~~~~G~l~l~l~~~~ 137 (159)
||+|.+.|+|..++..+... +. .++..++..+.+++-.+|++.+++.|++
T Consensus 82 D~mG~A~I~l~p~~~~~~~~~l~~~~~~gt~~~~v~~s~dn~~~~es~i~~s~~~~~q~~~l~l~~ve~g~~e~~~~~~~ 161 (168)
T KOG1030|consen 82 DFMGEATIPLKPLLEAQKMDYLKLELLTGTAIGKVLLSRDNCLNEESAIIRSFGKIVQDYILRLQNVECGELEIQLEWIK 161 (168)
T ss_pred cccceeeeccHHHHHHhhhhccccccCCCcEeeEEEeccccccccceEEEecCChhhhhhccchhhcCcceeeeeeeEec
Confidence 99999999999887753332 01 1444456666666778899999999998
Q ss_pred CCCCCc
Q 044346 138 LPGSKG 143 (159)
Q Consensus 138 ~~~~~~ 143 (159)
.++..+
T Consensus 162 ~~~~~~ 167 (168)
T KOG1030|consen 162 LPGSVG 167 (168)
T ss_pred Cccccc
Confidence 887654
No 2
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.94 E-value=2.5e-25 Score=145.74 Aligned_cols=115 Identities=19% Similarity=0.247 Sum_probs=98.7
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEEeecccC-CCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCcc
Q 044346 12 LLSLRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGN-NVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRM 90 (159)
Q Consensus 12 ~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~~~~~~t~~~~~-~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~l 90 (159)
.|.|.|+|++|++++..+.+.+||||++.++..+++|++..+ +.||.|||+|.|.+......|.|+|||++.+++|++|
T Consensus 1 ~g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~i 80 (121)
T cd04016 1 VGRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERI 80 (121)
T ss_pred CcEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceE
Confidence 378999999999887766789999999999999999999876 8999999999999986667899999999999999999
Q ss_pred EEEEEeCcc-chhhcccCCCCCceeeeEEeecCC----CcccEEEEEEEE
Q 044346 91 KDAKIDIRE-YMKDVKINLEPRNAVKDLDLKLTN----IECGKLQVQLRY 135 (159)
Q Consensus 91 G~~~i~l~~-l~~~~~~~~~~~~~~~~~~~~l~~----~~~G~l~l~l~~ 135 (159)
|++.+++.. +..+... +.|+.+.. ...|.|+|+++|
T Consensus 81 G~~~i~l~~~~~~g~~~---------~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 81 AWTHITIPESVFNGETL---------DDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred EEEEEECchhccCCCCc---------cccEeCcCccCCCCceEEEEEEeC
Confidence 999999964 4443222 66887754 567999999987
No 3
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.92 E-value=9.4e-24 Score=141.33 Aligned_cols=130 Identities=24% Similarity=0.373 Sum_probs=110.9
Q ss_pred CcccccCcccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCC-CCcEEEEEE
Q 044346 2 GVADKGRRTSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYP-NVPIMLSVC 79 (159)
Q Consensus 2 ~~~~~~~~~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~ 79 (159)
+.|-.+.....|.|+|+|++|++|+..+ .+.+||||++.++...++|+++.++.||.|||.|.|.+... ...+.|+||
T Consensus 4 ~~~~~~~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~ 83 (136)
T cd08375 4 YLARSQRASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVF 83 (136)
T ss_pred eeccccCCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEE
Confidence 4566788889999999999999999998 89999999999999899999999999999999999998764 568999999
Q ss_pred EccCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCCCcccEEEEEEEE
Q 044346 80 DHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRY 135 (159)
Q Consensus 80 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~ 135 (159)
|++.+++|++||++.+++.++.....- ..+. ...|+.++...+|+|+|++.+
T Consensus 84 D~d~~~~d~~lG~~~i~l~~l~~~~~~--~~~~--~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 84 DRDFFSPDDFLGRTEIRVADILKETKE--SKGP--ITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred ECCCCCCCCeeEEEEEEHHHhcccccc--CCCc--EEEEeccccccceeEEEEEEe
Confidence 999999999999999999998763111 0011 145677777889999999876
No 4
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.91 E-value=2.1e-23 Score=138.10 Aligned_cols=113 Identities=18% Similarity=0.291 Sum_probs=95.5
Q ss_pred EEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeC------CCCcEEEEEEEccCCCCC
Q 044346 15 LRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTY------PNVPIMLSVCDHDSFTKD 87 (159)
Q Consensus 15 L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~------~~~~l~~~v~d~~~~~~d 87 (159)
++|+|++|++|+.++ .+.+||||.+.++..+++|+++.++.||+|||.|.|.+.. ....|.|+|||++.+++|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 479999999999998 8899999999999999999999999999999999999876 356899999999999899
Q ss_pred CccEEEEEeCccchhhcccCCCCCceeeeEEeecCC------CcccEEEEEEE
Q 044346 88 DRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN------IECGKLQVQLR 134 (159)
Q Consensus 88 ~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~------~~~G~l~l~l~ 134 (159)
++||++.++|+++...... ..+.|+.+.+ ...|+|+|+++
T Consensus 81 ~~iG~~~i~l~~l~~~~~~-------~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 81 KFLGQVSIPLNDLDEDKGR-------RRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred ceeEEEEEEHHHhhccCCC-------cccEEEECcCCCCCCccccceEEEEeC
Confidence 9999999999997632111 1156877743 35699999874
No 5
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.91 E-value=8.1e-23 Score=134.36 Aligned_cols=114 Identities=28% Similarity=0.402 Sum_probs=99.9
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-eEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCccE
Q 044346 14 SLRLRIKQGVNLAIHD-HSGSDPCVFVMMAK-ENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMK 91 (159)
Q Consensus 14 ~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~-~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~lG 91 (159)
+|+|+|.+|++|+..+ .+.+||||++.++. ..++|+++.++.||.|||.|.|.+......+.|+|||++.+++|++||
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG 80 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG 80 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence 4899999999999999 88999999999985 677999999999999999999998766789999999999999999999
Q ss_pred EEEEeCccchhhcccCCCCCceeeeEEeecCC----CcccEEEEEEEEE
Q 044346 92 DAKIDIREYMKDVKINLEPRNAVKDLDLKLTN----IECGKLQVQLRYC 136 (159)
Q Consensus 92 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~----~~~G~l~l~l~~~ 136 (159)
.+.+++.++..+... +.|+.+.+ ...|+|.|.++|.
T Consensus 81 ~~~~~l~~l~~~~~~---------~~~~~L~~~~~~~~~G~l~l~~~~~ 120 (121)
T cd04042 81 SAFVDLSTLELNKPT---------EVKLKLEDPNSDEDLGYISLVVTLT 120 (121)
T ss_pred EEEEEHHHcCCCCCe---------EEEEECCCCCCccCceEEEEEEEEC
Confidence 999999998764443 66777743 4579999999886
No 6
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.90 E-value=1.6e-22 Score=131.89 Aligned_cols=113 Identities=25% Similarity=0.366 Sum_probs=100.0
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCC-CCcEEEEEEEccCCCCCCccE
Q 044346 14 SLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYP-NVPIMLSVCDHDSFTKDDRMK 91 (159)
Q Consensus 14 ~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~d~~lG 91 (159)
.++|+|++|++|+..+ .+.+|||+.+++++...+|+++.++.||.|+|.|.|.+..+ ...|.|+|||++.++++++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 3789999999999998 88999999999998889999999999999999999998765 689999999999999999999
Q ss_pred EEEEeCccchhhcccCCCCCceeeeEEeecCCCcccEEEEEEEEE
Q 044346 92 DAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRYC 136 (159)
Q Consensus 92 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~~ 136 (159)
++.++|+++..+... +.|+.+.+. .|+|++.+.|.
T Consensus 81 ~~~~~l~~l~~~~~~---------~~w~~L~~~-~G~~~~~~~~~ 115 (116)
T cd08376 81 RCEIDLSALPREQTH---------SLELELEDG-EGSLLLLLTLT 115 (116)
T ss_pred EEEEeHHHCCCCCce---------EEEEEccCC-CcEEEEEEEec
Confidence 999999997654333 789888654 69999998874
No 7
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.90 E-value=1e-22 Score=133.20 Aligned_cols=113 Identities=21% Similarity=0.292 Sum_probs=96.2
Q ss_pred eEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccC-CCCCccccEEEEEeeCC-CCcEEEEEEEccCCCCCCc
Q 044346 13 LSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGN-NVNPEWNEVFPFSTTYP-NVPIMLSVCDHDSFTKDDR 89 (159)
Q Consensus 13 ~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~-~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~d~~ 89 (159)
|.|+|+|++|++|+..+ .+.+||||.+.++...++|+++.+ +.||.|||.|.|.+..+ ...|.|+|||++..+ |++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence 67999999999999999 899999999999988889998764 78999999999998864 578999999999876 899
Q ss_pred cEEEEEeCccchhhcccCCCCCceeeeEEeecC--CCcccEEEEEEEE
Q 044346 90 MKDAKIDIREYMKDVKINLEPRNAVKDLDLKLT--NIECGKLQVQLRY 135 (159)
Q Consensus 90 lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~--~~~~G~l~l~l~~ 135 (159)
||++.+++.++...... ..|+.+. ....|+|+++++|
T Consensus 80 iG~~~~~l~~~~~~~~~---------~~w~~L~~~~~~~G~i~l~l~f 118 (118)
T cd08681 80 IGDTEVDLSPALKEGEF---------DDWYELTLKGRYAGEVYLELTF 118 (118)
T ss_pred eEEEEEecHHHhhcCCC---------CCcEEeccCCcEeeEEEEEEEC
Confidence 99999999998764332 4466553 3568999999986
No 8
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.89 E-value=3.9e-22 Score=131.99 Aligned_cols=115 Identities=17% Similarity=0.238 Sum_probs=98.0
Q ss_pred EEEEEEEeeCCCCCCCCCCCcEEEEEEC--CeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCccEE
Q 044346 15 LRLRIKQGVNLAIHDHSGSDPCVFVMMA--KENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKD 92 (159)
Q Consensus 15 L~v~v~~a~~L~~~~~~~~dpy~~v~~~--~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~lG~ 92 (159)
|.|+|++|++|+. ..+.+||||.+.++ ...++|+++.++.||.|+|.|.|.+......|.|+|||++..+++++||+
T Consensus 1 l~v~v~~A~~L~~-~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~ 79 (126)
T cd08678 1 LLVKNIKANGLSE-AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGL 79 (126)
T ss_pred CEEEEEEecCCCC-CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEE
Confidence 5799999999988 76789999999997 45689999999999999999999997667889999999999989999999
Q ss_pred EEEeCccchhhcccCCCCCceeeeEEeecC------CCcccEEEEEEEEEeCC
Q 044346 93 AKIDIREYMKDVKINLEPRNAVKDLDLKLT------NIECGKLQVQLRYCNLP 139 (159)
Q Consensus 93 ~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~------~~~~G~l~l~l~~~~~~ 139 (159)
+.+++.++...... ..|+.+. ....|+|.+++.|.+++
T Consensus 80 ~~i~l~~l~~~~~~---------~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 80 AIVPFDELRKNPSG---------RQIFPLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred EEEeHHHhccCCce---------eEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence 99999998765433 3455553 24689999999998654
No 9
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.89 E-value=4.2e-22 Score=130.73 Aligned_cols=113 Identities=30% Similarity=0.488 Sum_probs=99.6
Q ss_pred eEEEEEEEEeeCCCCCC-C------CCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeC-CCCcEEEEEEEccCC
Q 044346 13 LSLRLRIKQGVNLAIHD-H------SGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTY-PNVPIMLSVCDHDSF 84 (159)
Q Consensus 13 ~~L~v~v~~a~~L~~~~-~------~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~-~~~~l~~~v~d~~~~ 84 (159)
|.|+|+|.+|++|+..+ . +.+||||.+.++...++|+++.++.+|.|+|.|.|.+.. ....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 57999999999999876 2 579999999999999999999999999999999999875 367999999999988
Q ss_pred CCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCCCcccEEEEEEEE
Q 044346 85 TKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRY 135 (159)
Q Consensus 85 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~ 135 (159)
++++||.+.+++.++..+... +.|+.+.+...|+|+++++|
T Consensus 81 -~~~~iG~~~i~l~~l~~~~~~---------~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 81 -KDDFLGRLSIDLGSVEKKGFI---------DEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred -CCCcEEEEEEEHHHhcccCcc---------ceEEECcCCCCceEEEEEeC
Confidence 889999999999998754332 77999987789999999876
No 10
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.89 E-value=3.8e-22 Score=131.48 Aligned_cols=92 Identities=18% Similarity=0.322 Sum_probs=83.6
Q ss_pred EEEEEEEeeC---CCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCC-----
Q 044346 15 LRLRIKQGVN---LAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFT----- 85 (159)
Q Consensus 15 L~v~v~~a~~---L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~----- 85 (159)
|.|+|++|++ |+.++ .+.+||||.+.++.++.+|+++.++.||+|||+|.|.+..+...|.|+|||++.++
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~ 81 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAV 81 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccC
Confidence 7899999999 78888 89999999999999999999999999999999999999877779999999998874
Q ss_pred -CCCccEEEEEeCccchhhccc
Q 044346 86 -KDDRMKDAKIDIREYMKDVKI 106 (159)
Q Consensus 86 -~d~~lG~~~i~l~~l~~~~~~ 106 (159)
+|++||++.+++.++..+...
T Consensus 82 ~~dd~lG~~~i~l~~l~~~~~~ 103 (126)
T cd08379 82 QPDVLIGKVRIRLSTLEDDRVY 103 (126)
T ss_pred CCCceEEEEEEEHHHccCCCEE
Confidence 899999999999997765443
No 11
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.89 E-value=5.8e-22 Score=130.61 Aligned_cols=120 Identities=23% Similarity=0.303 Sum_probs=100.0
Q ss_pred ceEEEEEEEEeeCCCCCC--CCCCCcEEEEEECC--eEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCC
Q 044346 12 LLSLRLRIKQGVNLAIHD--HSGSDPCVFVMMAK--ENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKD 87 (159)
Q Consensus 12 ~~~L~v~v~~a~~L~~~~--~~~~dpy~~v~~~~--~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d 87 (159)
.|.|+|+|.+|++|+..+ .+.+||||.+.+.. ..++|+++.++.+|.|+|.|.|.+......|.|+|||++..++|
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d 80 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKD 80 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCC
Confidence 478999999999999765 46789999999986 78899999999999999999999886588999999999999899
Q ss_pred CccEEEEEeCccchhhcccCCCCCceeeeEEeecCCCcccEEEEEEEEEe
Q 044346 88 DRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRYCN 137 (159)
Q Consensus 88 ~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~~~ 137 (159)
++||.+.+++.++......... ...+.......|+|+++++|.|
T Consensus 81 ~~iG~~~~~l~~l~~~~~~~~~------~~~~~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 81 KLIGTAEFDLSSLLQNPEQENL------TKNLLRNGKPVGELNYDLRFFP 124 (124)
T ss_pred ceeEEEEEEHHHhccCccccCc------chhhhcCCccceEEEEEEEeCC
Confidence 9999999999998875444110 1122234567899999999973
No 12
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.89 E-value=7e-22 Score=129.84 Aligned_cols=112 Identities=20% Similarity=0.262 Sum_probs=95.0
Q ss_pred EEEEEEEeeCCCCCC--CCCCCcEEEEEECCe-EEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCccE
Q 044346 15 LRLRIKQGVNLAIHD--HSGSDPCVFVMMAKE-NIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMK 91 (159)
Q Consensus 15 L~v~v~~a~~L~~~~--~~~~dpy~~v~~~~~-~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~lG 91 (159)
|.|.|.+|++|+.++ .+.+||||.+.++.. ..+|+++.++.||.|||+|.|.+......|.|.+||++.++++++||
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG 81 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG 81 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence 689999999999974 578999999999854 57999999999999999999999866689999999999999999999
Q ss_pred EEEEeCccchhhcccCCCCCceeeeEEeecCC-----CcccEEEEEEEE
Q 044346 92 DAKIDIREYMKDVKINLEPRNAVKDLDLKLTN-----IECGKLQVQLRY 135 (159)
Q Consensus 92 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~-----~~~G~l~l~l~~ 135 (159)
.+.++++++...... +.|+.+.. ...|+|++++++
T Consensus 82 ~~~i~l~~l~~~~~~---------~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 82 KVAIKKEDLHKYYGK---------DTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred EEEEEHHHccCCCCc---------EeeEEEEccCCCCcccEEEEEEEEC
Confidence 999999997753322 66777643 347999999864
No 13
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.89 E-value=1.1e-21 Score=132.42 Aligned_cols=96 Identities=39% Similarity=0.713 Sum_probs=88.3
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCccE
Q 044346 12 LLSLRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMK 91 (159)
Q Consensus 12 ~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~lG 91 (159)
.|.|.|+|++|++|+..+.+.+||||.+.++.+.++|+++.++.||.|+|.|.|.+..+...+.|+|||++.+++|++||
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG 80 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG 80 (145)
T ss_pred CeEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence 47899999999999987766899999999999999999999999999999999999888889999999999999999999
Q ss_pred EEEEeCccchhhcccC
Q 044346 92 DAKIDIREYMKDVKIN 107 (159)
Q Consensus 92 ~~~i~l~~l~~~~~~~ 107 (159)
++.+++.++.....+.
T Consensus 81 ~a~i~l~~l~~~~~~~ 96 (145)
T cd04038 81 EAEIDLEPLVEAAKLD 96 (145)
T ss_pred EEEEEHHHhhhhhhhh
Confidence 9999999998765543
No 14
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.88 E-value=1.1e-21 Score=128.57 Aligned_cols=111 Identities=25% Similarity=0.389 Sum_probs=97.3
Q ss_pred EEEEEEEeeCCCCCC-CCCCCcEEEEEEC---CeEEEeecccCCCCCccccEEEEEeeCC-CCcEEEEEEEccCCCCCCc
Q 044346 15 LRLRIKQGVNLAIHD-HSGSDPCVFVMMA---KENIKIRFIGNNVNPEWNEVFPFSTTYP-NVPIMLSVCDHDSFTKDDR 89 (159)
Q Consensus 15 L~v~v~~a~~L~~~~-~~~~dpy~~v~~~---~~~~~t~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~d~~ 89 (159)
|+|+|++|++|+..+ .+.+||||++.+. ...++|+++.++.||.|||.|.|.+... ...|.|+|||++.+ +|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999988 8899999999986 4567999999999999999999998754 45799999999998 8999
Q ss_pred cEEEEEeCccchhhcccCCCCCceeeeEEeecCCCcccEEEEEEEE
Q 044346 90 MKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRY 135 (159)
Q Consensus 90 lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~ 135 (159)
||++.+++.++..+... +.|+.+.+..+|+|++++.+
T Consensus 81 iG~~~~~l~~l~~g~~~---------~~~~~L~~~~~g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGEKV---------RVTFSLNPQGKEELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCCcE---------EEEEECCCCCCceEEEEEEe
Confidence 99999999997764433 77888888889999999865
No 15
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.88 E-value=1.7e-21 Score=129.07 Aligned_cols=117 Identities=26% Similarity=0.409 Sum_probs=97.9
Q ss_pred eEEEEEEEEeeCCCCCC---CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeC-CCCcEEEEEEEccCCCCCC
Q 044346 13 LSLRLRIKQGVNLAIHD---HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTY-PNVPIMLSVCDHDSFTKDD 88 (159)
Q Consensus 13 ~~L~v~v~~a~~L~~~~---~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~-~~~~l~~~v~d~~~~~~d~ 88 (159)
|.|+|+|++|++|+..+ .+.+||||.+.++...++|+++.++.+|.|+|.|.|.+.. ....|.|+|||++..++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 67999999999999866 4689999999999889999999999999999999999886 4689999999999998999
Q ss_pred ccEEEEEeCccchhhcccCCCCCceeeeEEeecCCC-------cccEEEEEEEE
Q 044346 89 RMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNI-------ECGKLQVQLRY 135 (159)
Q Consensus 89 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~-------~~G~l~l~l~~ 135 (159)
+||++.+++.++........ ...|+.+.+. ..|+|+|+++|
T Consensus 81 ~lG~~~i~l~~~~~~~~~~~------~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 81 YLGEFDIALEEVFADGKTGQ------SDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred cceEEEEEHHHhhcccccCc------cceeEEccCcccCccccccceEEEEEEC
Confidence 99999999999874211111 1456666432 68999999876
No 16
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.88 E-value=9.5e-22 Score=130.31 Aligned_cols=115 Identities=16% Similarity=0.245 Sum_probs=95.9
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCC----CCcEEEEEEEccCCC-CC
Q 044346 14 SLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYP----NVPIMLSVCDHDSFT-KD 87 (159)
Q Consensus 14 ~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~~~~-~d 87 (159)
.|+|+|++|++|+..+ .+.+||||.+.+..+.++|+++.++.||.|||.|.|.+..+ ...|.|+|||++.++ ++
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 3899999999999998 88999999999998899999999999999999999998753 257999999999886 88
Q ss_pred CccEEEEEeCccchhhcccCCCCCceeeeEEeecCC-----CcccEEEEEEEEE
Q 044346 88 DRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN-----IECGKLQVQLRYC 136 (159)
Q Consensus 88 ~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~-----~~~G~l~l~l~~~ 136 (159)
++||++.++++++...... ...|+.+.. ..+|+|.|++.+-
T Consensus 81 ~~lG~v~i~l~~l~~~~~~--------~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 81 SFLGRVRISGTSFVPPSEA--------VVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CeeeEEEEcHHHcCCCCCc--------cceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 9999999999997631111 145666532 4789999998764
No 17
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.87 E-value=4e-21 Score=130.49 Aligned_cols=117 Identities=22% Similarity=0.296 Sum_probs=97.4
Q ss_pred EEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccC-CCCCccccEEEEEeeCC-CCcEEEEEEEccCCCCCCccE
Q 044346 15 LRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGN-NVNPEWNEVFPFSTTYP-NVPIMLSVCDHDSFTKDDRMK 91 (159)
Q Consensus 15 L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~-~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~d~~lG 91 (159)
|.|+|.+|++|+..+ .+.+||||++.++.+.++|++..+ +.||.|||.|.|.+..+ ...+.|+|||++..++|++||
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG 81 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLG 81 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEE
Confidence 789999999999999 899999999999999999998876 69999999999998764 568999999999888899999
Q ss_pred EEEEeCccchhhcccCCCCCceeeeEEeecCC-----------CcccEEEEEEEEE
Q 044346 92 DAKIDIREYMKDVKINLEPRNAVKDLDLKLTN-----------IECGKLQVQLRYC 136 (159)
Q Consensus 92 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~-----------~~~G~l~l~l~~~ 136 (159)
++.++|+++...... ....+.|+.+.+ ...|+|+|.++|.
T Consensus 82 ~v~i~L~~l~~~~~~-----~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~ 132 (150)
T cd04019 82 RAVIPLNDIERRVDD-----RPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD 132 (150)
T ss_pred EEEEEHHHCcccCCC-----CccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence 999999997653111 011256777643 2459999999885
No 18
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=3.4e-21 Score=149.84 Aligned_cols=134 Identities=28% Similarity=0.363 Sum_probs=113.7
Q ss_pred ccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC---CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEcc
Q 044346 10 TSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA---KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHD 82 (159)
Q Consensus 10 ~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~---~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~ 82 (159)
.....|.|+|++|++|+..+ .+.+||||++++. +.+.+|++.++++||.|||+|.|.+... ...|.++|||.|
T Consensus 164 ~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~d 243 (421)
T KOG1028|consen 164 FELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFD 243 (421)
T ss_pred ccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecC
Confidence 44668999999999999999 8889999999998 4677999999999999999999996653 579999999999
Q ss_pred CCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC------CcccEEEEEEEEEeCCCCCce-EEEEEecccc
Q 044346 83 SFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN------IECGKLQVQLRYCNLPGSKGF-IMFYECSSLC 154 (159)
Q Consensus 83 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~------~~~G~l~l~l~~~~~~~~~~l-~~~~~~~~l~ 154 (159)
.|++++++|++.++|..+...... .+|.++.. ...|+|.+.++|+ +.+++| +.|++|+||.
T Consensus 244 rfsr~~~iGev~~~l~~~~~~~~~---------~~w~~l~~~~~~~~~~~gel~~sL~Y~--p~~g~ltv~v~kar~L~ 311 (421)
T KOG1028|consen 244 RFSRHDFIGEVILPLGEVDLLSTT---------LFWKDLQPSSTDSEELAGELLLSLCYL--PTAGRLTVVVIKARNLK 311 (421)
T ss_pred CcccccEEEEEEecCccccccccc---------eeeeccccccCCcccccceEEEEEEee--cCCCeEEEEEEEecCCC
Confidence 999999999999999886654322 44555421 2237999999999 778999 9999999995
No 19
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.87 E-value=7e-21 Score=124.65 Aligned_cols=112 Identities=20% Similarity=0.297 Sum_probs=96.6
Q ss_pred eEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCccE
Q 044346 13 LSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMK 91 (159)
Q Consensus 13 ~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~lG 91 (159)
|.|.|+|++|++|+..+ .+.+||||.+++....++|+++.++.||.|+|+|.|.+......+.|+|||++..+++++||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG 80 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence 67999999999999998 88999999999998888999999999999999999998765789999999999988999999
Q ss_pred EEEEeCccchhhcccCCCCCceeeeEEeecC-----CCcccEEEEEEEE
Q 044346 92 DAKIDIREYMKDVKINLEPRNAVKDLDLKLT-----NIECGKLQVQLRY 135 (159)
Q Consensus 92 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~-----~~~~G~l~l~l~~ 135 (159)
++.+++.++.... ..|+.+. ....|+|.+++++
T Consensus 81 ~~~~~l~~~~~~~-----------~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 81 KVAIPLLSIKNGE-----------RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred EEEEEHHHCCCCC-----------ceEEECcccCCCCceeeEEEEEEEe
Confidence 9999999875421 2355443 2468999999876
No 20
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.87 E-value=1.7e-20 Score=124.09 Aligned_cols=117 Identities=17% Similarity=0.317 Sum_probs=97.3
Q ss_pred cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCc
Q 044346 11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDR 89 (159)
Q Consensus 11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~ 89 (159)
+...|+|+|++|++|+..+ .+.+||||.+.++...++|+++.++.+|.|+|.|.|.+......|.|+|||++.. +|++
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~ 79 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEF 79 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCc
Confidence 3578999999999999988 8899999999999999999999999999999999999887788999999999887 5899
Q ss_pred cEEEEEeCccchhhcccCCCCCceeeeEEee-----cCCCcccEEEEEEEEEe
Q 044346 90 MKDAKIDIREYMKDVKINLEPRNAVKDLDLK-----LTNIECGKLQVQLRYCN 137 (159)
Q Consensus 90 lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~-----l~~~~~G~l~l~l~~~~ 137 (159)
||.+.+++..+..... ...++. ..+...|.|.+++++.+
T Consensus 80 lG~~~~~l~~~~~~~~---------~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 80 LGQATLSADPNDSQTL---------RTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred eEEEEEecccCCCcCc---------eEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 9999999987532111 122321 23467899999998764
No 21
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.86 E-value=8.1e-21 Score=126.72 Aligned_cols=120 Identities=24% Similarity=0.418 Sum_probs=96.6
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCe-------EEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCC
Q 044346 14 SLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKE-------NIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFT 85 (159)
Q Consensus 14 ~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~-------~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~ 85 (159)
.|+|+|++|++|+..+ .+.+||||++.+... .++|+++.++.||.|||.|.|.+......|.|+|||++.++
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~ 80 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT 80 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence 3789999999999998 889999999998743 56899999999999999999998766778999999999999
Q ss_pred CCCccEEEEEeCccchhhcccCCCCCceeeeEEeecC-----CCcccEEEEEEEEE
Q 044346 86 KDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLT-----NIECGKLQVQLRYC 136 (159)
Q Consensus 86 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~-----~~~~G~l~l~l~~~ 136 (159)
++++||++.+++.++........ ......|+.++ ....|+|+++++|+
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~~~~---~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTETPGNE---RRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCeeEEEEEEHHHCCCcCcccc---ccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 99999999999999876422100 00013344443 24689999999874
No 22
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.86 E-value=1.2e-20 Score=124.01 Aligned_cols=112 Identities=24% Similarity=0.347 Sum_probs=94.3
Q ss_pred EEEEEEEeeCCCCCC-CCCCCcEEEEEECCe-EEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCccEE
Q 044346 15 LRLRIKQGVNLAIHD-HSGSDPCVFVMMAKE-NIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKD 92 (159)
Q Consensus 15 L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~-~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~lG~ 92 (159)
|.|+|++|++|+.++ .+.+||||.+.++.. ..+|+++.++.||.|||.|.|.+......|.|++||++.+++|++||+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~ 81 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK 81 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence 789999999999999 889999999999754 469999999999999999999987666899999999999999999999
Q ss_pred EEEeCccchhhcccCCCCCceeeeEEeecCC-----CcccEEEEEEE
Q 044346 93 AKIDIREYMKDVKINLEPRNAVKDLDLKLTN-----IECGKLQVQLR 134 (159)
Q Consensus 93 ~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~-----~~~G~l~l~l~ 134 (159)
+.++++++..... ..+.|+.+.+ ...|+|+++++
T Consensus 82 ~~~~~~~~~~~~~--------~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 82 VSLTREVISAHPR--------GIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEcHHHhccCCC--------CCCcEEECeeeCCCCccccEEEEEEE
Confidence 9999888654211 1156777754 34899988875
No 23
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.86 E-value=3.5e-20 Score=122.63 Aligned_cols=113 Identities=19% Similarity=0.384 Sum_probs=92.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCcEEEEEECCe-EEEeecccCCCCCccccEEEEEeeCCC-CcEEEEEEEccCCCCCCcc
Q 044346 13 LSLRLRIKQGVNLAIHDHSGSDPCVFVMMAKE-NIKIRFIGNNVNPEWNEVFPFSTTYPN-VPIMLSVCDHDSFTKDDRM 90 (159)
Q Consensus 13 ~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~~~-~~~t~~~~~~~~P~w~e~~~~~~~~~~-~~l~~~v~d~~~~~~d~~l 90 (159)
..|+|.|++|++|+.. +.+||||.+.++.. ..+|++ .++.||.|||.|.|.+.++. ..+.|.+||++.+++|++|
T Consensus 4 ~~L~V~Vi~A~~L~~~--~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~i 80 (126)
T cd08400 4 RSLQLNVLEAHKLPVK--HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEI 80 (126)
T ss_pred eEEEEEEEEeeCCCCC--CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeE
Confidence 4699999999999885 46899999999854 457776 46899999999999866553 5789999999999999999
Q ss_pred EEEEEeCccchhhcccCCCCCceeeeEEeecCC------CcccEEEEEEEEEe
Q 044346 91 KDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN------IECGKLQVQLRYCN 137 (159)
Q Consensus 91 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~------~~~G~l~l~l~~~~ 137 (159)
|.+.++|.++...... +.|+.+.+ ...|+|+|+++|.+
T Consensus 81 G~v~i~l~~l~~~~~~---------~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 81 AEVTVQLSKLQNGQET---------DEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred EEEEEEHhHccCCCcc---------cEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 9999999987653332 56777643 45699999999984
No 24
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.86 E-value=1.4e-20 Score=123.93 Aligned_cols=111 Identities=24% Similarity=0.403 Sum_probs=93.4
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCC-CCcEEEEEEEccCCCCCCccE
Q 044346 14 SLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYP-NVPIMLSVCDHDSFTKDDRMK 91 (159)
Q Consensus 14 ~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~d~~lG 91 (159)
.|+|++++|++|+..+ .+.+||||.++++....+|+++.++.||.|+|+|.|.+... ...|.|+|||++.++++++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 3899999999999998 78899999999998889999999999999999999998765 568999999999999999999
Q ss_pred EEEEeCccchhhcccCCCCCceeeeEEeecC---------CCcccEEEEEE
Q 044346 92 DAKIDIREYMKDVKINLEPRNAVKDLDLKLT---------NIECGKLQVQL 133 (159)
Q Consensus 92 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~---------~~~~G~l~l~l 133 (159)
++.+++.++...... ..|+.+. +...|.|++.+
T Consensus 81 ~~~~~l~~l~~~~~~---------~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 81 KVVFSIQTLQQAKQE---------EGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEHHHcccCCCC---------CCEEECCCCCCCCccccCceEEEEEEe
Confidence 999999997653222 3355442 24568888776
No 25
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.86 E-value=3.4e-20 Score=127.08 Aligned_cols=117 Identities=24% Similarity=0.301 Sum_probs=97.1
Q ss_pred ccceEEEEEEEEeeCCCCCC-------------------------------CCCCCcEEEEEECCeE-EEeecccCCCCC
Q 044346 10 TSLLSLRLRIKQGVNLAIHD-------------------------------HSGSDPCVFVMMAKEN-IKIRFIGNNVNP 57 (159)
Q Consensus 10 ~~~~~L~v~v~~a~~L~~~~-------------------------------~~~~dpy~~v~~~~~~-~~t~~~~~~~~P 57 (159)
-..|.|.|+|.+|++|+.++ .+.+||||++.+++.. .+|+++.++.||
T Consensus 4 llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP 83 (158)
T cd04015 4 LLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENP 83 (158)
T ss_pred EEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCC
Confidence 35689999999999999865 3457999999998654 599999999999
Q ss_pred ccccEEEEEeeCCCCcEEEEEEEccCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC------CcccEEEE
Q 044346 58 EWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN------IECGKLQV 131 (159)
Q Consensus 58 ~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~------~~~G~l~l 131 (159)
.|||+|.|.+......|.|.|||++.++ +++||.+.++++++..+... +.|+++.+ ...|+|+|
T Consensus 84 ~WnE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~---------~~w~~L~~~~~~~~~~~~~l~v 153 (158)
T cd04015 84 VWNESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPV---------EGWLPILDSNGKPPKPGAKIRV 153 (158)
T ss_pred ccceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCc---------ceEEECcCCCCCCCCCCCEEEE
Confidence 9999999998777788999999999885 58999999999998764333 67877743 34589999
Q ss_pred EEEEE
Q 044346 132 QLRYC 136 (159)
Q Consensus 132 ~l~~~ 136 (159)
+++|.
T Consensus 154 ~~~f~ 158 (158)
T cd04015 154 SLQFT 158 (158)
T ss_pred EEEEC
Confidence 99883
No 26
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.85 E-value=5.6e-20 Score=123.02 Aligned_cols=118 Identities=19% Similarity=0.237 Sum_probs=95.3
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCC----------CCcEEEEEEEcc
Q 044346 14 SLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYP----------NVPIMLSVCDHD 82 (159)
Q Consensus 14 ~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~----------~~~l~~~v~d~~ 82 (159)
.|+|+|.+|++|+.++ .+.+||||++.++...++|+++.++.||.|||.|.|.+... ...+.|+|||++
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 6899999999999999 89999999999998899999999999999999999974321 246899999999
Q ss_pred CCCCCCccEEEEE-eCccchhhcccCCCCCceeeeEEeecC--CCcccEEEEEEEEEe
Q 044346 83 SFTKDDRMKDAKI-DIREYMKDVKINLEPRNAVKDLDLKLT--NIECGKLQVQLRYCN 137 (159)
Q Consensus 83 ~~~~d~~lG~~~i-~l~~l~~~~~~~~~~~~~~~~~~~~l~--~~~~G~l~l~l~~~~ 137 (159)
..++|++||++.+ ++..+.... +......|+.+. ....|+|.+++++++
T Consensus 82 ~~~~d~~iG~~~i~~~~~~~~~~------~~~~~~~W~~L~~~~~~~Geil~~~~~~~ 133 (135)
T cd04017 82 SVGKDEFLGRSVAKPLVKLDLEE------DFPPKLQWFPIYKGGQSAGELLAAFELIE 133 (135)
T ss_pred CCCCCccceEEEeeeeeecccCC------CCCCCceEEEeecCCCchhheeEEeEEEE
Confidence 9999999999987 443333211 111226787764 367899999999985
No 27
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.85 E-value=5.7e-20 Score=122.52 Aligned_cols=115 Identities=23% Similarity=0.284 Sum_probs=97.1
Q ss_pred ceEEEEEEEEeeCCCCCC-C----------CCCCcEEEEEECCeE-EEeecccCCCCCccccEEEEEeeCCCCcEEEEEE
Q 044346 12 LLSLRLRIKQGVNLAIHD-H----------SGSDPCVFVMMAKEN-IKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVC 79 (159)
Q Consensus 12 ~~~L~v~v~~a~~L~~~~-~----------~~~dpy~~v~~~~~~-~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~ 79 (159)
.|.|+|+|.+|++|+..+ . +.+||||++.++... .+|+++.++.+|.|||+|.|.+. ....+.|.||
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~ 81 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVF 81 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEE
Confidence 578999999999999877 3 478999999998654 58888889999999999999997 5678999999
Q ss_pred EccCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCCCcccEEEEEEEEE
Q 044346 80 DHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRYC 136 (159)
Q Consensus 80 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~~ 136 (159)
|++.+++++++|.+.++|+++...... ..+.|+.+. +.|+|+++++|.
T Consensus 82 d~~~~~~~~~iG~~~i~l~~l~~~~~~-------~~~~w~~L~--~~G~l~l~~~~~ 129 (132)
T cd04014 82 HDAAIGPDDFVANCTISFEDLIQRGSG-------SFDLWVDLE--PQGKLHVKIELK 129 (132)
T ss_pred eCCCCCCCceEEEEEEEhHHhcccCCC-------cccEEEEcc--CCcEEEEEEEEe
Confidence 999888899999999999997763000 126788885 689999999886
No 28
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.85 E-value=2.7e-20 Score=119.91 Aligned_cols=93 Identities=20% Similarity=0.332 Sum_probs=82.6
Q ss_pred eEEEEEEEEeeCCCCCC-C----CCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCC--CCcEEEEEEEccCCC
Q 044346 13 LSLRLRIKQGVNLAIHD-H----SGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYP--NVPIMLSVCDHDSFT 85 (159)
Q Consensus 13 ~~L~v~v~~a~~L~~~~-~----~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~--~~~l~~~v~d~~~~~ 85 (159)
|.|.|+|++|++|+..+ . +.+|||+.++++...++|+++.++.||+|||.|.|.+... ...|.|+|||++.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 68999999999999875 2 3489999999998889999999999999999999998654 347999999999999
Q ss_pred CCCccEEEEEeCccchhhcc
Q 044346 86 KDDRMKDAKIDIREYMKDVK 105 (159)
Q Consensus 86 ~d~~lG~~~i~l~~l~~~~~ 105 (159)
+|++||++.++|+++.....
T Consensus 81 ~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 81 FNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred CCcceEEEEEEHHHHHhhCC
Confidence 99999999999999887533
No 29
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.85 E-value=1.8e-20 Score=121.39 Aligned_cols=90 Identities=11% Similarity=0.253 Sum_probs=79.0
Q ss_pred ccceEEEEEEEEeeCCCCCCCCCCCcEEEEEECC----eEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEcc
Q 044346 10 TSLLSLRLRIKQGVNLAIHDHSGSDPCVFVMMAK----ENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHD 82 (159)
Q Consensus 10 ~~~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~~----~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~ 82 (159)
...+.|+|+|++|++|+ . .+.+||||++++.. .+.+|++.++|+||.|||+|.|.+... +..|.|+|||+|
T Consensus 11 ~~~~~L~V~vikA~~L~-~-~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~D 88 (118)
T cd08677 11 KQKAELHVNILEAENIS-V-DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCD 88 (118)
T ss_pred CcCCEEEEEEEEecCCC-C-CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCC
Confidence 45688999999999999 3 35589999999862 577899999999999999999998763 468999999999
Q ss_pred CCCCCCccEEEEEeCccch
Q 044346 83 SFTKDDRMKDAKIDIREYM 101 (159)
Q Consensus 83 ~~~~d~~lG~~~i~l~~l~ 101 (159)
.++++++||++.++++++.
T Consensus 89 rfs~~d~IG~v~l~l~~~~ 107 (118)
T cd08677 89 RFSRHSTLGELRLKLADVS 107 (118)
T ss_pred CCCCCceEEEEEEcccccc
Confidence 9999999999999999853
No 30
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.85 E-value=4.1e-20 Score=120.83 Aligned_cols=100 Identities=18% Similarity=0.191 Sum_probs=84.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCcEEEEEEC-------CeEEEeecccCCCCCccccEEEEEeeCC----CCcEEEEEEEcc
Q 044346 14 SLRLRIKQGVNLAIHDHSGSDPCVFVMMA-------KENIKIRFIGNNVNPEWNEVFPFSTTYP----NVPIMLSVCDHD 82 (159)
Q Consensus 14 ~L~v~v~~a~~L~~~~~~~~dpy~~v~~~-------~~~~~t~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~ 82 (159)
.|+|.|++|++|+..+.|.+||||++++. .++++|+++.++.||+|||.|.|.+... ...|.|.|||++
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 38999999999988777889999999972 2356899999999999999999998753 246999999999
Q ss_pred CCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecC
Q 044346 83 SFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLT 122 (159)
Q Consensus 83 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~ 122 (159)
..+++++||++.+++.++..++.. ..|+.+.
T Consensus 81 ~~~~dd~IG~~~l~l~~~~~~~~~---------~~w~~L~ 111 (120)
T cd08395 81 FARDDRLVGVTVLQLRDIAQAGSC---------ACWLPLG 111 (120)
T ss_pred ccCCCCEEEEEEEEHHHCcCCCcE---------EEEEECc
Confidence 888899999999999998765443 6677764
No 31
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.84 E-value=1.3e-19 Score=119.96 Aligned_cols=114 Identities=17% Similarity=0.272 Sum_probs=95.5
Q ss_pred EEEeeCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEccCCCCCCccEEEEE
Q 044346 19 IKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHDSFTKDDRMKDAKI 95 (159)
Q Consensus 19 v~~a~~L~~~~~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~~d~~lG~~~i 95 (159)
|++|++|+. ..+.+||||++++....++|+++.++.+|.|+|.|.|.+... ...+.|+|||++..+++++||++.+
T Consensus 2 vi~a~~L~~-~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~ 80 (127)
T cd08373 2 VVSLKNLPG-LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATV 80 (127)
T ss_pred eEEeeCCcc-cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEE
Confidence 678999988 667899999999998889999999999999999999998653 5789999999999989999999999
Q ss_pred eCccchhhcccCCCCCceeeeEEeecCC----CcccEEEEEEEEEeCCCCC
Q 044346 96 DIREYMKDVKINLEPRNAVKDLDLKLTN----IECGKLQVQLRYCNLPGSK 142 (159)
Q Consensus 96 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~----~~~G~l~l~l~~~~~~~~~ 142 (159)
+++++..+... ..|+.+.+ ...|+|+++++|.++.+..
T Consensus 81 ~l~~l~~~~~~---------~~~~~L~~~~~~~~~~~l~l~~~~~~~~~~~ 122 (127)
T cd08373 81 SLQDLVSEGLL---------EVTEPLLDSNGRPTGATISLEVSYQPPDGAV 122 (127)
T ss_pred EhhHcccCCce---------EEEEeCcCCCCCcccEEEEEEEEEeCCCCcc
Confidence 99998865443 55665532 3469999999999765443
No 32
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.84 E-value=6.8e-20 Score=123.48 Aligned_cols=103 Identities=17% Similarity=0.124 Sum_probs=87.0
Q ss_pred ceEEEEEEEEeeCCCCCC--CCCCCcEEEEEEC--C---eEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEE-EccC
Q 044346 12 LLSLRLRIKQGVNLAIHD--HSGSDPCVFVMMA--K---ENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVC-DHDS 83 (159)
Q Consensus 12 ~~~L~v~v~~a~~L~~~~--~~~~dpy~~v~~~--~---~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~-d~~~ 83 (159)
.+.|.|+|++|++|+..+ .+.+||||++++. . .+.+|+++++++||+|||+|.|.+...+..|.|+|| |++.
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~ 107 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGR 107 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCC
Confidence 578999999999999864 6789999999995 2 377999999999999999999999866789999999 5788
Q ss_pred CCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC
Q 044346 84 FTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN 123 (159)
Q Consensus 84 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 123 (159)
++++++||++.++|+++...... ..|+.|.+
T Consensus 108 ~~~~~~iG~~~i~L~~l~~~~~~---------~~Wy~L~~ 138 (146)
T cd04028 108 MDKKVFMGVAQILLDDLDLSNLV---------IGWYKLFP 138 (146)
T ss_pred CCCCceEEEEEEEcccccCCCCc---------eeEEecCC
Confidence 88899999999999997543332 56777754
No 33
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.84 E-value=5.2e-20 Score=121.12 Aligned_cols=92 Identities=21% Similarity=0.299 Sum_probs=81.3
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeC----CCCcEEEEEEEcc
Q 044346 12 LLSLRLRIKQGVNLAIHDHSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTY----PNVPIMLSVCDHD 82 (159)
Q Consensus 12 ~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~----~~~~l~~~v~d~~ 82 (159)
.+.|.|.|++|++|+.++.+.+||||++++. ..+++|+++.++.||.|||+|.|.+.+ ....|.|+|||++
T Consensus 12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d 91 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD 91 (122)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence 5789999999999998887789999999996 346799999999999999999999732 2568999999999
Q ss_pred CCCCCCccEEEEEeCccchhh
Q 044346 83 SFTKDDRMKDAKIDIREYMKD 103 (159)
Q Consensus 83 ~~~~d~~lG~~~i~l~~l~~~ 103 (159)
.++++++||++.++|.++...
T Consensus 92 ~~~~~~~lG~~~i~l~~l~~~ 112 (122)
T cd08381 92 SLVENEFLGGVCIPLKKLDLS 112 (122)
T ss_pred CCcCCcEEEEEEEeccccccC
Confidence 999999999999999997753
No 34
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.84 E-value=1.1e-19 Score=119.44 Aligned_cols=113 Identities=27% Similarity=0.374 Sum_probs=93.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCC-CCcEEEEEEEccCCCCCCccEEE
Q 044346 15 LRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYP-NVPIMLSVCDHDSFTKDDRMKDA 93 (159)
Q Consensus 15 L~v~v~~a~~L~~~~~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~d~~lG~~ 93 (159)
|.|+|++|++|+.+ .+||||.+.++....+|+++.++.||.|||+|.|.+... ...|.|+|||++.. ++++||++
T Consensus 2 L~V~Vi~a~~L~~~---~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~~ 77 (121)
T cd08378 2 LYVRVVKARGLPAN---SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGGV 77 (121)
T ss_pred EEEEEEEecCCCcc---cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeeeE
Confidence 78999999999886 789999999998889999999999999999999998763 67899999999987 78999999
Q ss_pred EEeCccchhhcccCCCCCceeeeEEeecCC----CcccEEEEEEEE
Q 044346 94 KIDIREYMKDVKINLEPRNAVKDLDLKLTN----IECGKLQVQLRY 135 (159)
Q Consensus 94 ~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~----~~~G~l~l~l~~ 135 (159)
.++++++...... ++ ...+.|+.+.. ..+|+|+|++.|
T Consensus 78 ~i~l~~l~~~~~~---~~-~~~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 78 CFDLSEVPTRVPP---DS-PLAPQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred EEEhHhCcCCCCC---CC-CCCcceEEccCCCCCccceEEEEEEEe
Confidence 9999997653211 01 11256777744 457999999876
No 35
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.84 E-value=3.4e-19 Score=117.81 Aligned_cols=115 Identities=23% Similarity=0.281 Sum_probs=96.2
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCcEEEEEECC---eEEEeecccCCCCCccccEEEEEeeCC-CCcEEEEEEEccCCCCCC
Q 044346 14 SLRLRIKQGVNLAIHD-HSGSDPCVFVMMAK---ENIKIRFIGNNVNPEWNEVFPFSTTYP-NVPIMLSVCDHDSFTKDD 88 (159)
Q Consensus 14 ~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~---~~~~t~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~d~ 88 (159)
.|+|+|++|++|+..+ .+.+||||.+.... ...+|+++.++.+|.|||.|.|.+... ...|.|+|||++..++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 5899999999999998 88999999998763 467999999999999999999998864 578999999999988999
Q ss_pred ccEEEEEeCccchhhcccCCCCCceeeeEEeecCCCcccEEEEEEEEE
Q 044346 89 RMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRYC 136 (159)
Q Consensus 89 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~~ 136 (159)
+||++.++|+++..... + ...+.|+.+. +.|+|++++.+.
T Consensus 82 ~iG~~~i~l~~~~~~~~-----~-~~~~~w~~l~--~~g~i~l~~~~~ 121 (126)
T cd04043 82 LCGRASLKLDPKRFGDD-----G-LPREIWLDLD--TQGRLLLRVSME 121 (126)
T ss_pred eEEEEEEecCHHHcCCC-----C-CCceEEEEcC--CCCeEEEEEEEe
Confidence 99999999987543210 1 1226788885 489999999885
No 36
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.83 E-value=1.5e-19 Score=119.80 Aligned_cols=109 Identities=26% Similarity=0.424 Sum_probs=91.1
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCC--------
Q 044346 14 SLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSF-------- 84 (159)
Q Consensus 14 ~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~-------- 84 (159)
.|+|+|++|++|+..+ .+.+||||.+.++....+|+++.++.+|.|+|.|.|.+..+...|.|+|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~ 81 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK 81 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence 6899999999999999 8899999999998888899999999999999999999876677899999998853
Q ss_pred ---CCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC-----CcccEEEEEE
Q 044346 85 ---TKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN-----IECGKLQVQL 133 (159)
Q Consensus 85 ---~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~-----~~~G~l~l~l 133 (159)
+.+++||++.+++.++... . +.|+.+.. ..+|+|.+++
T Consensus 82 ~~~~~~~~iG~~~i~l~~~~~~--~---------~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 82 FTRESDDFLGQTIIEVRTLSGE--M---------DVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred ccccCCCcceEEEEEhHHccCC--C---------CeEEECccCCCCCcEeEEEEEEC
Confidence 4689999999999885321 1 45666532 4678888764
No 37
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.83 E-value=1.6e-19 Score=119.29 Aligned_cols=97 Identities=25% Similarity=0.344 Sum_probs=83.4
Q ss_pred ccceEEEEEEEEeeCCCCCC--CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEE
Q 044346 10 TSLLSLRLRIKQGVNLAIHD--HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVC 79 (159)
Q Consensus 10 ~~~~~L~v~v~~a~~L~~~~--~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~ 79 (159)
...+.|.|+|++|++|+..+ .+.+||||++++. ..+++|++++++.||.|||+|.|.+... +..|.|+||
T Consensus 12 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~ 91 (125)
T cd04029 12 YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVW 91 (125)
T ss_pred CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence 45678999999999999876 4789999999985 2357899999999999999999998753 568999999
Q ss_pred EccCCCCCCccEEEEEeCccchhhccc
Q 044346 80 DHDSFTKDDRMKDAKIDIREYMKDVKI 106 (159)
Q Consensus 80 d~~~~~~d~~lG~~~i~l~~l~~~~~~ 106 (159)
|++.++++++||++.++|.++......
T Consensus 92 d~~~~~~~~~lG~~~i~l~~~~~~~~~ 118 (125)
T cd04029 92 HYDRFGRNTFLGEVEIPLDSWNFDSQH 118 (125)
T ss_pred ECCCCCCCcEEEEEEEeCCcccccCCc
Confidence 999999999999999999997664433
No 38
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.83 E-value=1.6e-19 Score=119.14 Aligned_cols=104 Identities=22% Similarity=0.339 Sum_probs=89.4
Q ss_pred ccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC---CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEcc
Q 044346 10 TSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA---KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHD 82 (159)
Q Consensus 10 ~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~---~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~ 82 (159)
+..+.|.|+|++|++|+..+ .+.+||||++++. ...++|+++.++.+|.|+|.|.|.+... ...|.|+|||++
T Consensus 13 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~ 92 (124)
T cd08387 13 KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFD 92 (124)
T ss_pred CCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECC
Confidence 34678999999999999999 8899999999984 4567999999999999999999997753 468999999999
Q ss_pred CCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecC
Q 044346 83 SFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLT 122 (159)
Q Consensus 83 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~ 122 (159)
.++++++||++.++++++..++.. +.|+.+.
T Consensus 93 ~~~~~~~iG~~~i~l~~~~~~~~~---------~~W~~l~ 123 (124)
T cd08387 93 QFSRDECIGVVELPLAEVDLSEKL---------DLWRKIQ 123 (124)
T ss_pred CCCCCceeEEEEEecccccCCCCc---------ceEEECc
Confidence 999999999999999998764433 6687663
No 39
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.83 E-value=1.2e-19 Score=117.54 Aligned_cols=91 Identities=31% Similarity=0.464 Sum_probs=81.5
Q ss_pred eEEEEEEEEeeCCCCCC-C-CCCCcEEEEEEC---CeEEEeecccCCCCCccccEEEEEeeCC----CCcEEEEEEEccC
Q 044346 13 LSLRLRIKQGVNLAIHD-H-SGSDPCVFVMMA---KENIKIRFIGNNVNPEWNEVFPFSTTYP----NVPIMLSVCDHDS 83 (159)
Q Consensus 13 ~~L~v~v~~a~~L~~~~-~-~~~dpy~~v~~~---~~~~~t~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~~ 83 (159)
|.|+|+|++|++|+..+ . +.+||||++++. ...++|+++.++.||.|+|.|.|.+... ...|.|+|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 68999999999999998 6 899999999985 3567999999999999999999987653 4689999999999
Q ss_pred CCCCCccEEEEEeCccchhh
Q 044346 84 FTKDDRMKDAKIDIREYMKD 103 (159)
Q Consensus 84 ~~~d~~lG~~~i~l~~l~~~ 103 (159)
+++|++||++.+++.++...
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~ 100 (111)
T cd04041 81 FTADDRLGRVEIDLKELIED 100 (111)
T ss_pred CCCCCcceEEEEEHHHHhcC
Confidence 99999999999999998753
No 40
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.83 E-value=2.3e-19 Score=115.08 Aligned_cols=100 Identities=22% Similarity=0.364 Sum_probs=86.5
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCC-CCcEEEEEEEccCCCCCCccE
Q 044346 14 SLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYP-NVPIMLSVCDHDSFTKDDRMK 91 (159)
Q Consensus 14 ~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~d~~lG 91 (159)
.|.|+|.+|++|+..+ .+.+||||++.++++.++|+++.++.+|.|||.|.|.+..+ ...|.|+|||++. +++||
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG 77 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG 77 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence 3889999999999988 88999999999999999999999999999999999999875 5689999999886 78999
Q ss_pred EEEEeCccchhhcccCCCCCceeeeEEeecCC
Q 044346 92 DAKIDIREYMKDVKINLEPRNAVKDLDLKLTN 123 (159)
Q Consensus 92 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 123 (159)
++.++|.++...... ..+.|+.+.+
T Consensus 78 ~~~i~l~~l~~~~~~-------~~~~w~~L~~ 102 (105)
T cd04050 78 SLTLPLSELLKEPDL-------TLDQPFPLDN 102 (105)
T ss_pred EEEEEHHHhhccccc-------eeeeeEecCC
Confidence 999999998764311 1267887743
No 41
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.82 E-value=2.5e-19 Score=118.13 Aligned_cols=103 Identities=26% Similarity=0.381 Sum_probs=87.5
Q ss_pred cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC---CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEccC
Q 044346 11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA---KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHDS 83 (159)
Q Consensus 11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~---~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~ 83 (159)
..+.|.|+|++|++|+..+ .+.+||||++.+. ...++|+++.++.||.|||.|.|.+... ...|.|+|||++.
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~ 93 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR 93 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC
Confidence 4578999999999999998 8899999999985 3567999999999999999999998653 4689999999999
Q ss_pred CCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecC
Q 044346 84 FTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLT 122 (159)
Q Consensus 84 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~ 122 (159)
++++++||++.++++++..+... +.|+++.
T Consensus 94 ~~~~~~lG~~~i~l~~~~~~~~~---------~~W~~l~ 123 (124)
T cd08385 94 FSKHDLIGEVRVPLLTVDLGHVT---------EEWRDLE 123 (124)
T ss_pred CCCCceeEEEEEecCcccCCCCc---------ceEEEcc
Confidence 99999999999999997553333 5677653
No 42
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.82 E-value=1.4e-18 Score=118.06 Aligned_cols=121 Identities=20% Similarity=0.269 Sum_probs=95.5
Q ss_pred EEEEEEEeeC--CCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC---------CCcEEEE
Q 044346 15 LRLRIKQGVN--LAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP---------NVPIMLS 77 (159)
Q Consensus 15 L~v~v~~a~~--L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---------~~~l~~~ 77 (159)
..++|..+.+ ++... .+..|||+++++. ..+.+|+++++|+||+|||.|.|.+... ...|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4556666666 56666 7789999999872 5688999999999999999999998654 3479999
Q ss_pred EEEccCC-CCCCccEEEEEeCccchhhcccCCCCCceeeeEEeec---CCCcccEEEEEEEEEeCCCCCce
Q 044346 78 VCDHDSF-TKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKL---TNIECGKLQVQLRYCNLPGSKGF 144 (159)
Q Consensus 78 v~d~~~~-~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l---~~~~~G~l~l~l~~~~~~~~~~l 144 (159)
|||++.+ ++|++||++.++|+.+..+... ..|+++ +....|+|+++++..++.....+
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~---------~~~~~L~~~~k~~Gg~l~v~ir~r~p~~~~~~ 145 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEI---------HESVDLMDGRKATGGKLEVKVRLREPLTGKQL 145 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcc---------eEEEEhhhCCCCcCCEEEEEEEecCCCcccee
Confidence 9999987 5799999999999998765444 335554 33667999999999887655554
No 43
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.82 E-value=3.8e-19 Score=117.20 Aligned_cols=88 Identities=20% Similarity=0.326 Sum_probs=80.1
Q ss_pred EEEEEEEeeCCCCCC-CCCCCcEEEEEEC-CeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCC--CCcc
Q 044346 15 LRLRIKQGVNLAIHD-HSGSDPCVFVMMA-KENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTK--DDRM 90 (159)
Q Consensus 15 L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~--d~~l 90 (159)
|+|+|++|++|+..+ .+.+||||+++++ ...++|+++.++.||.|+|.|.|.+.. ...|.|+|||++.+++ |++|
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~l 80 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFL 80 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceE
Confidence 789999999999999 8999999999996 678899999999999999999999974 7899999999998875 5799
Q ss_pred EEEEEeCccchhh
Q 044346 91 KDAKIDIREYMKD 103 (159)
Q Consensus 91 G~~~i~l~~l~~~ 103 (159)
|++.+++.++...
T Consensus 81 G~~~i~l~~l~~~ 93 (123)
T cd08382 81 GCVRIRANAVLPL 93 (123)
T ss_pred eEEEEEHHHcccc
Confidence 9999999998753
No 44
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.82 E-value=1.4e-19 Score=119.61 Aligned_cols=93 Identities=23% Similarity=0.338 Sum_probs=81.7
Q ss_pred cceEEEEEEEEeeCCCCCC-C-CCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEE
Q 044346 11 SLLSLRLRIKQGVNLAIHD-H-SGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCD 80 (159)
Q Consensus 11 ~~~~L~v~v~~a~~L~~~~-~-~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d 80 (159)
..+.|.|+|++|++|+.++ . +.+|||+++++. ..+++|+++.++.||.|||.|.|.+... ...|.|+|||
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d 92 (125)
T cd08393 13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWH 92 (125)
T ss_pred CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEe
Confidence 3568999999999999998 5 799999999985 2457999999999999999999998642 4689999999
Q ss_pred ccCCCCCCccEEEEEeCccchhh
Q 044346 81 HDSFTKDDRMKDAKIDIREYMKD 103 (159)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~l~~~ 103 (159)
++.++++++||++.++|.++...
T Consensus 93 ~~~~~~~~~iG~~~i~L~~~~~~ 115 (125)
T cd08393 93 RDSLGRNSFLGEVEVDLGSWDWS 115 (125)
T ss_pred CCCCCCCcEeEEEEEecCccccC
Confidence 99999999999999999997543
No 45
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.82 E-value=3.4e-19 Score=118.08 Aligned_cols=92 Identities=21% Similarity=0.260 Sum_probs=81.4
Q ss_pred cceEEEEEEEEeeCCCCCC-C-CCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEE
Q 044346 11 SLLSLRLRIKQGVNLAIHD-H-SGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCD 80 (159)
Q Consensus 11 ~~~~L~v~v~~a~~L~~~~-~-~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d 80 (159)
..+.|.|.|++|++|+.++ . +.+||||++++. ..+.+|+++.++.||+|||+|.|.+... ...|.+.|||
T Consensus 13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~ 92 (128)
T cd08392 13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWH 92 (128)
T ss_pred CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEe
Confidence 3578999999999999988 5 899999999986 2366999999999999999999998653 4699999999
Q ss_pred ccCCCCCCccEEEEEeCccchh
Q 044346 81 HDSFTKDDRMKDAKIDIREYMK 102 (159)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~l~~ 102 (159)
++.++++++||++.++|.++..
T Consensus 93 ~~~~~~~~~lG~~~i~L~~~~~ 114 (128)
T cd08392 93 SRTLKRRVFLGEVLIPLADWDF 114 (128)
T ss_pred CCCCcCcceEEEEEEEcCCccc
Confidence 9999999999999999999643
No 46
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.81 E-value=3.8e-19 Score=115.01 Aligned_cols=88 Identities=25% Similarity=0.495 Sum_probs=80.7
Q ss_pred EEEEEEEeeCCCCCC--CCCCCcEEEEEECCeEEEeecccCCCCCcc-ccEEEEEeeCC---CCcEEEEEEEccCCCCCC
Q 044346 15 LRLRIKQGVNLAIHD--HSGSDPCVFVMMAKENIKIRFIGNNVNPEW-NEVFPFSTTYP---NVPIMLSVCDHDSFTKDD 88 (159)
Q Consensus 15 L~v~v~~a~~L~~~~--~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w-~e~~~~~~~~~---~~~l~~~v~d~~~~~~d~ 88 (159)
|.|+|++|++|+.++ .+.+||||+++++...++|+++.++.||.| +|.|.|.+... +..|.|+|||++.+++++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 579999999999887 578999999999999999999999999999 99999998763 468999999999999999
Q ss_pred ccEEEEEeCccchh
Q 044346 89 RMKDAKIDIREYMK 102 (159)
Q Consensus 89 ~lG~~~i~l~~l~~ 102 (159)
+||++.+++.++..
T Consensus 81 ~iG~~~~~l~~l~~ 94 (110)
T cd08688 81 AIGKVYIDLNPLLL 94 (110)
T ss_pred ceEEEEEeHHHhcc
Confidence 99999999999876
No 47
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.81 E-value=4.6e-19 Score=119.98 Aligned_cols=89 Identities=18% Similarity=0.304 Sum_probs=77.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCcEEEEEECC-----eEEEeecccCCCCCccccEEEEEeeC----------------CCC
Q 044346 14 SLRLRIKQGVNLAIHDHSGSDPCVFVMMAK-----ENIKIRFIGNNVNPEWNEVFPFSTTY----------------PNV 72 (159)
Q Consensus 14 ~L~v~v~~a~~L~~~~~~~~dpy~~v~~~~-----~~~~t~~~~~~~~P~w~e~~~~~~~~----------------~~~ 72 (159)
.|.|+|++|++|+. ..+.+||||++++.. ..++|+++.++.||.|||.|.|.+.. ...
T Consensus 1 kL~V~Vi~ArnL~~-~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 1 KLSVRVIECSDLAL-KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred CEEEEEEeCcCCCC-CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 38899999999988 557899999999974 56789999999999999999999851 124
Q ss_pred cEEEEEEEccCCCCCCccEEEEEeCccchhh
Q 044346 73 PIMLSVCDHDSFTKDDRMKDAKIDIREYMKD 103 (159)
Q Consensus 73 ~l~~~v~d~~~~~~d~~lG~~~i~l~~l~~~ 103 (159)
.|.|.|||++.+++|+|||++.+++..+...
T Consensus 80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~ 110 (148)
T cd04010 80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQ 110 (148)
T ss_pred EEEEEEEcCCCCCCCceeEEEEEeccccccc
Confidence 7899999999988999999999999997764
No 48
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.81 E-value=1.3e-18 Score=114.21 Aligned_cols=91 Identities=30% Similarity=0.442 Sum_probs=83.4
Q ss_pred eEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-eEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCcc
Q 044346 13 LSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAK-ENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRM 90 (159)
Q Consensus 13 ~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~-~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~l 90 (159)
|.|+|+|++|++|+..+ .+.+||||++.+.. ..++|.++.++.+|.|+|.|.|.+..+...|.|+|||++.+++|++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I 80 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL 80 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence 67999999999999998 89999999999974 56788888899999999999999887778999999999999999999
Q ss_pred EEEEEeCccchhh
Q 044346 91 KDAKIDIREYMKD 103 (159)
Q Consensus 91 G~~~i~l~~l~~~ 103 (159)
|++.+++.++..+
T Consensus 81 G~~~~~l~~l~~~ 93 (120)
T cd04045 81 GSVEINVSDLIKK 93 (120)
T ss_pred eEEEEeHHHhhCC
Confidence 9999999998764
No 49
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.81 E-value=1.4e-18 Score=114.65 Aligned_cols=94 Identities=27% Similarity=0.487 Sum_probs=84.1
Q ss_pred eEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccC-CCCCccccEEEEEeeCC----CCcEEEEEEEccCCCC
Q 044346 13 LSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGN-NVNPEWNEVFPFSTTYP----NVPIMLSVCDHDSFTK 86 (159)
Q Consensus 13 ~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~-~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~~~~~ 86 (159)
|.|.|+|++|++|+..+ .+.+||||++.+....++|++..+ +.+|.|||.|.|.+..+ ...|.|+|||++.+++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 67999999999999988 889999999999988888888875 89999999999998876 4689999999999989
Q ss_pred CCccEEEEEeCccchhhccc
Q 044346 87 DDRMKDAKIDIREYMKDVKI 106 (159)
Q Consensus 87 d~~lG~~~i~l~~l~~~~~~ 106 (159)
+++||++.+++.++..++..
T Consensus 81 d~~iG~~~i~l~~l~~~~~~ 100 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGVE 100 (124)
T ss_pred CCeEEEEEEEhHHhhhCCCC
Confidence 99999999999998864433
No 50
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.81 E-value=1.2e-18 Score=115.62 Aligned_cols=92 Identities=22% Similarity=0.388 Sum_probs=79.5
Q ss_pred cceEEEEEEEEeeCCCCCC-C-CCCCcEEEEEEC---CeEEEeecccCCCCCccccEEEEE-eeC---CCCcEEEEEEEc
Q 044346 11 SLLSLRLRIKQGVNLAIHD-H-SGSDPCVFVMMA---KENIKIRFIGNNVNPEWNEVFPFS-TTY---PNVPIMLSVCDH 81 (159)
Q Consensus 11 ~~~~L~v~v~~a~~L~~~~-~-~~~dpy~~v~~~---~~~~~t~~~~~~~~P~w~e~~~~~-~~~---~~~~l~~~v~d~ 81 (159)
..+.|+|+|++|++|+..+ . +.+||||++.+. ..+.+|+++.++.||.|||.|.|. +.. ....|.|+|||+
T Consensus 14 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~ 93 (128)
T cd08388 14 EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSF 93 (128)
T ss_pred CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEc
Confidence 3568999999999999988 5 889999999885 456799999999999999999994 442 235799999999
Q ss_pred cCCCCCCccEEEEEeCccchh
Q 044346 82 DSFTKDDRMKDAKIDIREYMK 102 (159)
Q Consensus 82 ~~~~~d~~lG~~~i~l~~l~~ 102 (159)
+.++++++||++.++|.++..
T Consensus 94 d~~~~d~~lG~~~i~L~~l~~ 114 (128)
T cd08388 94 DRYSRDDVIGEVVCPLAGADL 114 (128)
T ss_pred CCCCCCceeEEEEEeccccCC
Confidence 999999999999999999644
No 51
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.80 E-value=7.6e-19 Score=115.98 Aligned_cols=114 Identities=15% Similarity=0.244 Sum_probs=92.5
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-eEEEeeccc-CCCCCccccEEEEEeeCC-----CCcEEEEEEEccCCC
Q 044346 14 SLRLRIKQGVNLAIHD-HSGSDPCVFVMMAK-ENIKIRFIG-NNVNPEWNEVFPFSTTYP-----NVPIMLSVCDHDSFT 85 (159)
Q Consensus 14 ~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~-~~~~t~~~~-~~~~P~w~e~~~~~~~~~-----~~~l~~~v~d~~~~~ 85 (159)
.|+|+|++|++|+..+ .+.+||||.+.++. ..++|++.. ++.+|.|||.|.|.+..+ ...|.|+|||++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 3789999999999988 88999999999986 788898875 589999999999998876 579999999999988
Q ss_pred CCCccEEEEEeCccchhhcccCCCCCceeeeEEeec---CCCcccEEEE
Q 044346 86 KDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKL---TNIECGKLQV 131 (159)
Q Consensus 86 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l---~~~~~G~l~l 131 (159)
++++||++.+++.++.......-. ....|+.+ ....+|.|++
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~----~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGE----LRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCc----ceeEEEEeECCCCCcCeEEeC
Confidence 999999999999998875432100 11345544 3467787764
No 52
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.80 E-value=6e-19 Score=115.52 Aligned_cols=93 Identities=13% Similarity=0.224 Sum_probs=79.8
Q ss_pred cceEEEEEEEEeeCCCCCCCCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC--CCcEEEEEEEccC
Q 044346 11 SLLSLRLRIKQGVNLAIHDHSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP--NVPIMLSVCDHDS 83 (159)
Q Consensus 11 ~~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~--~~~l~~~v~d~~~ 83 (159)
..+.|.|+|++|++|+.++.+.+||||++++. ..+.+|++..++.||.|||.|.|.+... ...+.|+||+++.
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~ 89 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS 89 (119)
T ss_pred cCCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence 45789999999999998887789999999986 2366899999999999999999998653 3578899999988
Q ss_pred CC-CCCccEEEEEeCccchhh
Q 044346 84 FT-KDDRMKDAKIDIREYMKD 103 (159)
Q Consensus 84 ~~-~d~~lG~~~i~l~~l~~~ 103 (159)
.+ ++++||.+.+++.++..+
T Consensus 90 ~~~~~~~lG~~~i~l~~~~~~ 110 (119)
T cd08685 90 KSRDSGLLGCMSFGVKSIVNQ 110 (119)
T ss_pred CcCCCEEEEEEEecHHHhccC
Confidence 75 478999999999998754
No 53
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.80 E-value=8.3e-19 Score=120.63 Aligned_cols=96 Identities=24% Similarity=0.385 Sum_probs=83.8
Q ss_pred CcccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC----CCcEEEE
Q 044346 8 RRTSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP----NVPIMLS 77 (159)
Q Consensus 8 ~~~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~ 77 (159)
.....+.|.|+|++|++|+..+ .+.+||||++++. ...++|+++.++.||.|||.|.|.+... +..|.|+
T Consensus 22 ~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~ 101 (162)
T cd04020 22 KKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELT 101 (162)
T ss_pred cCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEE
Confidence 4557899999999999999999 8899999999874 4578999999999999999999985422 3579999
Q ss_pred EEEccCCCCCCccEEEEEeCccchhh
Q 044346 78 VCDHDSFTKDDRMKDAKIDIREYMKD 103 (159)
Q Consensus 78 v~d~~~~~~d~~lG~~~i~l~~l~~~ 103 (159)
|||++.++++++||++.+++.++...
T Consensus 102 V~d~d~~~~d~~lG~v~i~l~~~~~~ 127 (162)
T cd04020 102 VWDHDKLSSNDFLGGVRLGLGTGKSY 127 (162)
T ss_pred EEeCCCCCCCceEEEEEEeCCccccC
Confidence 99999999999999999999997653
No 54
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.80 E-value=9.3e-19 Score=115.52 Aligned_cols=92 Identities=24% Similarity=0.345 Sum_probs=81.8
Q ss_pred ccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeC--CCCcEEEEEEEccCCCC
Q 044346 10 TSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTY--PNVPIMLSVCDHDSFTK 86 (159)
Q Consensus 10 ~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~--~~~~l~~~v~d~~~~~~ 86 (159)
...+.|+|+|.+|++|+. + .+.+|||+++.++...++|+++.++.||.|||+|.|.... ....|.|+|||++.+++
T Consensus 25 ~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~ 103 (127)
T cd04032 25 RGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWD 103 (127)
T ss_pred CCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCC
Confidence 456899999999999985 5 7889999999999889999999999999999999997432 36799999999999999
Q ss_pred CCccEEEEEeCccchh
Q 044346 87 DDRMKDAKIDIREYMK 102 (159)
Q Consensus 87 d~~lG~~~i~l~~l~~ 102 (159)
|++||++.++|+....
T Consensus 104 dd~IG~~~i~l~~~~~ 119 (127)
T cd04032 104 DDLLGTCSVVPEAGVH 119 (127)
T ss_pred CCeeEEEEEEecCCce
Confidence 9999999999997553
No 55
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.80 E-value=8.9e-19 Score=115.31 Aligned_cols=93 Identities=18% Similarity=0.274 Sum_probs=82.5
Q ss_pred ccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC--C----eEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEE
Q 044346 10 TSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA--K----ENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVC 79 (159)
Q Consensus 10 ~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~--~----~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~ 79 (159)
...+.|.|.|++|+||+..+ .+.+||||++++- . .+++|++.+++.||+|||.|.|.+... +..|.|+||
T Consensus 11 ~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~ 90 (124)
T cd08680 11 SGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVC 90 (124)
T ss_pred CCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEE
Confidence 34578999999999999988 8899999999976 1 367999999999999999999998763 579999999
Q ss_pred EccCCCCCCccEEEEEeCccchh
Q 044346 80 DHDSFTKDDRMKDAKIDIREYMK 102 (159)
Q Consensus 80 d~~~~~~d~~lG~~~i~l~~l~~ 102 (159)
+++.++++++||++.++|+++..
T Consensus 91 ~~~~~~~~~~lG~~~i~L~~~~~ 113 (124)
T cd08680 91 SVGPDQQEECLGGAQISLADFES 113 (124)
T ss_pred eCCCCCceeEEEEEEEEhhhccC
Confidence 99999999999999999999744
No 56
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.80 E-value=3.4e-18 Score=111.87 Aligned_cols=87 Identities=11% Similarity=0.140 Sum_probs=77.1
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCccEE
Q 044346 13 LSLRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKD 92 (159)
Q Consensus 13 ~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~lG~ 92 (159)
+.|.|+|++|++|+.++ ..||||.+.++..+.+|++..+ .||.|||.|.|.+......|.|+|||++.+ .|+++|+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~--~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG~ 77 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD--KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVGT 77 (127)
T ss_pred ceEEEEEEEeeCCCCCC--CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceEE
Confidence 47999999999997755 4589999999998889998877 499999999999987777799999999976 8999999
Q ss_pred EEEeCccchhh
Q 044346 93 AKIDIREYMKD 103 (159)
Q Consensus 93 ~~i~l~~l~~~ 103 (159)
+.++|+++...
T Consensus 78 v~i~L~~v~~~ 88 (127)
T cd08394 78 VWIPLSTIRQS 88 (127)
T ss_pred EEEEhHHcccC
Confidence 99999997764
No 57
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.79 E-value=2.2e-18 Score=113.68 Aligned_cols=89 Identities=24% Similarity=0.381 Sum_probs=79.4
Q ss_pred cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEEeecccCCCCCccccEEEEEeeC----CCCcEEEEEEE
Q 044346 11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAK-----ENIKIRFIGNNVNPEWNEVFPFSTTY----PNVPIMLSVCD 80 (159)
Q Consensus 11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~-----~~~~t~~~~~~~~P~w~e~~~~~~~~----~~~~l~~~v~d 80 (159)
..+.|.|+|++|++|+..+ .+.+||||++.+.. ..++|+++.++.+|.|+|.|.|.+.. ....|.|+|||
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d 93 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEe
Confidence 4578999999999999998 88999999999863 56789999999999999999998543 24689999999
Q ss_pred ccCCCCCCccEEEEEeCcc
Q 044346 81 HDSFTKDDRMKDAKIDIRE 99 (159)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~ 99 (159)
++.++++++||++.++|.+
T Consensus 94 ~~~~~~~~~iG~~~i~l~~ 112 (125)
T cd04031 94 YDRDGENDFLGEVVIDLAD 112 (125)
T ss_pred CCCCCCCcEeeEEEEeccc
Confidence 9999899999999999998
No 58
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.79 E-value=9.8e-18 Score=110.75 Aligned_cols=115 Identities=26% Similarity=0.435 Sum_probs=91.5
Q ss_pred eEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCe-EEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCcc
Q 044346 13 LSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKE-NIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRM 90 (159)
Q Consensus 13 ~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~-~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~l 90 (159)
..|.|++.+|+ |...+ .+.+||||.+.++.. ..+|+++.++.+|.|+|.|.|.+. ....|.|+|||++..+.+++|
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~~~~~i 79 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLKADVLL 79 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCCCCcEE
Confidence 46899999998 55555 788999999999866 789999999999999999999986 567899999999999999999
Q ss_pred EEEEEeCccchhhcccCCCCCceeeeEEeecCC------CcccEEEEEE
Q 044346 91 KDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN------IECGKLQVQL 133 (159)
Q Consensus 91 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~------~~~G~l~l~l 133 (159)
|++.++|.++.......... ...|+.+.. ...|+|.+.+
T Consensus 80 G~~~i~l~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 80 GEASLDLSDILKNHNGKLEN----VKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEHHHhHhhcCCCccc----eEEEEEEEccCCCcceeeeeEEEEe
Confidence 99999999988764443320 123444422 3468887765
No 59
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.79 E-value=2.3e-18 Score=116.80 Aligned_cols=89 Identities=28% Similarity=0.415 Sum_probs=80.3
Q ss_pred EEEEEEEeeCCCCCC-CC--------------CCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCC--CCcEEEE
Q 044346 15 LRLRIKQGVNLAIHD-HS--------------GSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYP--NVPIMLS 77 (159)
Q Consensus 15 L~v~v~~a~~L~~~~-~~--------------~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~--~~~l~~~ 77 (159)
|.|+|.+|++|+.++ .+ .+||||++.++..+.+|+++.++.||+|||+|.|.+..+ ...+.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 789999999999988 43 689999999998889999999999999999999996543 5789999
Q ss_pred EEEccCCCCCCccEEEEEeCccchhh
Q 044346 78 VCDHDSFTKDDRMKDAKIDIREYMKD 103 (159)
Q Consensus 78 v~d~~~~~~d~~lG~~~i~l~~l~~~ 103 (159)
|||++..++|++||.+.+++.++..+
T Consensus 82 v~D~d~~~~dd~iG~~~l~l~~l~~~ 107 (151)
T cd04018 82 IRDWDRVGNDDVIGTHFIDLSKISNS 107 (151)
T ss_pred EEECCCCCCCCEEEEEEEeHHHhccC
Confidence 99999999999999999999998764
No 60
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.79 E-value=4.3e-18 Score=112.37 Aligned_cols=94 Identities=27% Similarity=0.440 Sum_probs=81.5
Q ss_pred cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC---CeEEEeecccCCCCCccccEEEEEeeCC----CCcEEEEEEEcc
Q 044346 11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA---KENIKIRFIGNNVNPEWNEVFPFSTTYP----NVPIMLSVCDHD 82 (159)
Q Consensus 11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~---~~~~~t~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~ 82 (159)
..+.|.|+|.+|++|+..+ .+.+||||.+.+. ....+|+++.++.+|.|||.|.|..... ...|.|+|||++
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d 93 (125)
T cd08386 14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCC
Confidence 4568999999999999998 8889999999983 5577999999999999999999974322 357999999999
Q ss_pred CCCCCCccEEEEEeCccchhhc
Q 044346 83 SFTKDDRMKDAKIDIREYMKDV 104 (159)
Q Consensus 83 ~~~~d~~lG~~~i~l~~l~~~~ 104 (159)
.++++++||++.+++.++....
T Consensus 94 ~~~~~~~iG~~~i~l~~l~~~~ 115 (125)
T cd08386 94 RFSRNDPIGEVSLPLNKVDLTE 115 (125)
T ss_pred CCcCCcEeeEEEEecccccCCC
Confidence 9999999999999999976543
No 61
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.79 E-value=2.8e-18 Score=113.52 Aligned_cols=93 Identities=20% Similarity=0.300 Sum_probs=81.8
Q ss_pred cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEc
Q 044346 11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDH 81 (159)
Q Consensus 11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~ 81 (159)
..+.|+|+|++|++|+..+ .+.+||||++.+. ...++|+++.++.||.|||.|.|.+... ...|.+.|||+
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~ 93 (127)
T cd04030 14 QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNS 93 (127)
T ss_pred CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEEC
Confidence 3578999999999999999 8899999999985 4578999999999999999999998653 46899999999
Q ss_pred cCC--CCCCccEEEEEeCccchhh
Q 044346 82 DSF--TKDDRMKDAKIDIREYMKD 103 (159)
Q Consensus 82 ~~~--~~d~~lG~~~i~l~~l~~~ 103 (159)
+.+ +++++||++.++|.++...
T Consensus 94 ~~~~~~~~~~iG~~~i~l~~l~~~ 117 (127)
T cd04030 94 KSFLSREKKLLGQVLIDLSDLDLS 117 (127)
T ss_pred CcccCCCCceEEEEEEeccccccc
Confidence 875 6889999999999997553
No 62
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.79 E-value=3.4e-18 Score=112.76 Aligned_cols=103 Identities=17% Similarity=0.265 Sum_probs=85.4
Q ss_pred ccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC---CeEEEeecccCCCCCccccEEEEE-eeC---CCCcEEEEEEEc
Q 044346 10 TSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA---KENIKIRFIGNNVNPEWNEVFPFS-TTY---PNVPIMLSVCDH 81 (159)
Q Consensus 10 ~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~---~~~~~t~~~~~~~~P~w~e~~~~~-~~~---~~~~l~~~v~d~ 81 (159)
...+.|.|+|++|++|+..+ .+.+|||+++.+. ..+.+|++.++ .||+|||+|.|. +.. .+..|.|+|||+
T Consensus 13 ~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~ 91 (124)
T cd08389 13 PSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGV 91 (124)
T ss_pred CCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEEC
Confidence 34568999999999999998 8889999998764 45778888877 999999999998 554 256899999999
Q ss_pred cCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecC
Q 044346 82 DSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLT 122 (159)
Q Consensus 82 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~ 122 (159)
+.++++++||++.++|+++..+... ..|+.+.
T Consensus 92 ~~~~~~~~lG~~~i~L~~l~~~~~~---------~~w~~L~ 123 (124)
T cd08389 92 ERMRKERLIGEKVVPLSQLNLEGET---------TVWLTLE 123 (124)
T ss_pred CCcccCceEEEEEEeccccCCCCCc---------eEEEeCC
Confidence 9999999999999999997553322 6677664
No 63
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.79 E-value=3.7e-18 Score=110.53 Aligned_cols=102 Identities=23% Similarity=0.230 Sum_probs=85.2
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCC-----CCcEEEEEEEccCCCC
Q 044346 12 LLSLRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYP-----NVPIMLSVCDHDSFTK 86 (159)
Q Consensus 12 ~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~-----~~~l~~~v~d~~~~~~ 86 (159)
...|+|+|.+|++|+ .+.+||||++.+++++++|+++.++.+|.|+|.|.|.+..+ +..|.|+|||++.+++
T Consensus 3 ~~~l~V~v~~a~~L~---~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~ 79 (111)
T cd04011 3 DFQVRVRVIEARQLV---GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRS 79 (111)
T ss_pred cEEEEEEEEEcccCC---CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccccc
Confidence 467999999999998 46799999999999999999999999999999999997543 3579999999999989
Q ss_pred CCccEEEEEeCccchhhcccCCCCCceeeeEEeecC
Q 044346 87 DDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLT 122 (159)
Q Consensus 87 d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~ 122 (159)
+++||++.++|+++.......+ ...|+.+.
T Consensus 80 ~~~iG~~~i~l~~v~~~~~~~~------~~~w~~L~ 109 (111)
T cd04011 80 DTLIGSFKLDVGTVYDQPDHAF------LRKWLLLT 109 (111)
T ss_pred CCccEEEEECCccccCCCCCcc------eEEEEEee
Confidence 9999999999999865422211 15676654
No 64
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.78 E-value=7.2e-18 Score=109.70 Aligned_cols=99 Identities=28% Similarity=0.413 Sum_probs=84.6
Q ss_pred EEEEEEEeeCCCCCC-CCCCCcEEEEEEC-CeEEEeecccCCCCCccccEEEEEeeCC-CCcEEEEEEEccCCCCCCccE
Q 044346 15 LRLRIKQGVNLAIHD-HSGSDPCVFVMMA-KENIKIRFIGNNVNPEWNEVFPFSTTYP-NVPIMLSVCDHDSFTKDDRMK 91 (159)
Q Consensus 15 L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-~~~~~t~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~d~~lG 91 (159)
|+|.|++|++|+..+ .+.+||||++.+. ...++|+++.++.+|.|+|.|.|.+... ...+.|+|||++..+++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 578999999999988 8889999999997 4557999999999999999999998763 678999999999998999999
Q ss_pred EEEEeCccchhhcccCCCCCceeeeEEeecC
Q 044346 92 DAKIDIREYMKDVKINLEPRNAVKDLDLKLT 122 (159)
Q Consensus 92 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~ 122 (159)
++.+++.++..+... +.|+.+.
T Consensus 81 ~~~~~l~~l~~~~~~---------~~~~~L~ 102 (115)
T cd04040 81 SAYIDLSDLEPEETT---------ELTLPLD 102 (115)
T ss_pred EEEEEHHHcCCCCcE---------EEEEECc
Confidence 999999997653222 5666664
No 65
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.78 E-value=6.6e-18 Score=109.34 Aligned_cols=99 Identities=14% Similarity=0.200 Sum_probs=84.6
Q ss_pred CCCCCcEEEEEECC-eEEEeecccCCCCCccccEEEEEeeCC-CCcEEEEEEEccCCCCCCccEEEEEeCccchhhcccC
Q 044346 30 HSGSDPCVFVMMAK-ENIKIRFIGNNVNPEWNEVFPFSTTYP-NVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKIN 107 (159)
Q Consensus 30 ~~~~dpy~~v~~~~-~~~~t~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~ 107 (159)
+|.+||||.+.++. ...+|+++.++.||.|||.|.|.+... ...|.|.|||++.+ ++++||++.++|.++......
T Consensus 10 ~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~- 87 (111)
T cd04052 10 TGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSV- 87 (111)
T ss_pred CCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhc-
Confidence 67899999999985 457889988999999999999998765 57899999999999 899999999999998653222
Q ss_pred CCCCceeeeEEeecCCCcccEEEEEEEEEe
Q 044346 108 LEPRNAVKDLDLKLTNIECGKLQVQLRYCN 137 (159)
Q Consensus 108 ~~~~~~~~~~~~~l~~~~~G~l~l~l~~~~ 137 (159)
.+.|+.+.+.+.|+|+++++|.|
T Consensus 88 -------~~~w~~L~~~~~G~i~~~~~~~p 110 (111)
T cd04052 88 -------GQQWFPLSGNGQGRIRISALWKP 110 (111)
T ss_pred -------cceeEECCCCCCCEEEEEEEEec
Confidence 16788887778999999999984
No 66
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.77 E-value=1.5e-17 Score=111.21 Aligned_cols=112 Identities=22% Similarity=0.359 Sum_probs=88.5
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCcEEEEEEC--C-----------eEEEeecccCCCCCcc-ccEEEEEeeCCCCcEEEEE
Q 044346 14 SLRLRIKQGVNLAIHD-HSGSDPCVFVMMA--K-----------ENIKIRFIGNNVNPEW-NEVFPFSTTYPNVPIMLSV 78 (159)
Q Consensus 14 ~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~--~-----------~~~~t~~~~~~~~P~w-~e~~~~~~~~~~~~l~~~v 78 (159)
.+.|.+++|++|+ ++ .+.+|||+++.+. . +.++|.++.++.||.| ||.|.|.+. .++.|.|+|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L~v~V 79 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVLEIEV 79 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEEEEEE
Confidence 4678999999998 67 8999999999985 1 3689999999999999 999999986 467899999
Q ss_pred EEccCCCC---CCccEEEEEeCccchhhcccCCCCCceeeeEEeecC-----CCcccEEEEEE
Q 044346 79 CDHDSFTK---DDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLT-----NIECGKLQVQL 133 (159)
Q Consensus 79 ~d~~~~~~---d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~-----~~~~G~l~l~l 133 (159)
||++..++ +++||++.+++.++......... ..|+.++ ....|+|.+++
T Consensus 80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~------~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 80 KDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQ------ELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EecCCCCCccCCceEEEEEEEHHHhcccccCCce------EEEEECCcCCCCCcEEEEEEEEe
Confidence 99765443 79999999999998775433221 4455543 25678888765
No 67
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.77 E-value=8e-18 Score=110.74 Aligned_cols=104 Identities=18% Similarity=0.245 Sum_probs=87.4
Q ss_pred ccceEEEEEEEEeeCCCCCC--CCCCCcEEEEEEC---CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEc
Q 044346 10 TSLLSLRLRIKQGVNLAIHD--HSGSDPCVFVMMA---KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDH 81 (159)
Q Consensus 10 ~~~~~L~v~v~~a~~L~~~~--~~~~dpy~~v~~~---~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~ 81 (159)
...+.|.|+|++|++|+..+ .+.+||||++++. ....+|+++.++.+|.|+|.|.|.+... ...|.|+|||+
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~ 90 (123)
T cd08390 11 LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDV 90 (123)
T ss_pred CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEEC
Confidence 34678999999999999886 6789999999984 4567899999999999999999998753 45899999999
Q ss_pred cCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecC
Q 044346 82 DSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLT 122 (159)
Q Consensus 82 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~ 122 (159)
+..+++++||++.++|+++...... +.|++|.
T Consensus 91 ~~~~~~~~iG~~~i~L~~l~~~~~~---------~~w~~L~ 122 (123)
T cd08390 91 DRFSRHCIIGHVLFPLKDLDLVKGG---------VVWRDLE 122 (123)
T ss_pred CcCCCCcEEEEEEEeccceecCCCc---------eEEEeCC
Confidence 9988899999999999997764433 5677663
No 68
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.77 E-value=7.8e-18 Score=110.77 Aligned_cols=94 Identities=28% Similarity=0.386 Sum_probs=81.4
Q ss_pred ccceEEEEEEEEeeCCCCCC--CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEE
Q 044346 10 TSLLSLRLRIKQGVNLAIHD--HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVC 79 (159)
Q Consensus 10 ~~~~~L~v~v~~a~~L~~~~--~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~ 79 (159)
...+.|.|+|++|++|+..+ .+.+||||++++. ....+|+++.++.+|.|||+|.|.+... ...|.|+||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~ 90 (123)
T cd08521 11 YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVW 90 (123)
T ss_pred CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence 34678999999999999877 5789999999874 2467899999999999999999997753 468999999
Q ss_pred EccCCCCCCccEEEEEeCccchhh
Q 044346 80 DHDSFTKDDRMKDAKIDIREYMKD 103 (159)
Q Consensus 80 d~~~~~~d~~lG~~~i~l~~l~~~ 103 (159)
|++.++++++||++.++|.++..+
T Consensus 91 d~~~~~~~~~iG~~~i~l~~l~~~ 114 (123)
T cd08521 91 HHDRFGRNTFLGEVEIPLDSWDLD 114 (123)
T ss_pred eCCCCcCCceeeEEEEeccccccc
Confidence 999999999999999999997543
No 69
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.77 E-value=4.8e-18 Score=113.39 Aligned_cols=92 Identities=25% Similarity=0.286 Sum_probs=81.8
Q ss_pred cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-------CeEEEeecccCCCCCccccEEEEEeeCC-----CCcEEEE
Q 044346 11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-------KENIKIRFIGNNVNPEWNEVFPFSTTYP-----NVPIMLS 77 (159)
Q Consensus 11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-------~~~~~t~~~~~~~~P~w~e~~~~~~~~~-----~~~l~~~ 77 (159)
....|+|+|++|++|+..+ .+.+||||++++. ...++|+++.++.||.|||.|.|.+... ...+.|+
T Consensus 14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~ 93 (133)
T cd04009 14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFT 93 (133)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence 3567999999999999988 8899999999985 3467999999999999999999998752 4589999
Q ss_pred EEEccCCCCCCccEEEEEeCccchh
Q 044346 78 VCDHDSFTKDDRMKDAKIDIREYMK 102 (159)
Q Consensus 78 v~d~~~~~~d~~lG~~~i~l~~l~~ 102 (159)
|||++.++++++||++.++|+++..
T Consensus 94 V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 94 VKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEecCCCCCCcEeEEEEEeHHHCCc
Confidence 9999999889999999999999775
No 70
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.76 E-value=1.7e-17 Score=109.51 Aligned_cols=89 Identities=27% Similarity=0.452 Sum_probs=79.0
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeE--EEeecccCCCCCccccEEEEEeeCC-CCcEEEEEEEccCCCCCCc
Q 044346 14 SLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKEN--IKIRFIGNNVNPEWNEVFPFSTTYP-NVPIMLSVCDHDSFTKDDR 89 (159)
Q Consensus 14 ~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~--~~t~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~d~~ 89 (159)
.|+|.|++|++|+..+ .+.+||||++.++... .+|.++.++.+|.|||.|.|.+..+ ...|.|+|||++.+++|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 3789999999999999 8899999999998544 4777888999999999999997654 5689999999999999999
Q ss_pred cEEEEEeCccchh
Q 044346 90 MKDAKIDIREYMK 102 (159)
Q Consensus 90 lG~~~i~l~~l~~ 102 (159)
||++.+++++...
T Consensus 81 iG~~~i~l~~~~~ 93 (124)
T cd04037 81 IGETVIDLEDRFF 93 (124)
T ss_pred eEEEEEeeccccc
Confidence 9999999998764
No 71
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.76 E-value=1.3e-17 Score=110.94 Aligned_cols=107 Identities=29% Similarity=0.405 Sum_probs=92.1
Q ss_pred eEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC--CCcEEEEEEEccCC
Q 044346 13 LSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP--NVPIMLSVCDHDSF 84 (159)
Q Consensus 13 ~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~--~~~l~~~v~d~~~~ 84 (159)
+.|+|+|++|++|+..+ .+.+||||.+.+. ...++|+++.++.+|.|+|+|.|.+... ...|.|+|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 78999999999999988 8889999999986 3578999999999999999999998754 46899999999998
Q ss_pred CCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCCCcccEE
Q 044346 85 TKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKL 129 (159)
Q Consensus 85 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~G~l 129 (159)
+++++||++.+++.++... .. +.|+++.+...|+.
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-~~---------~~w~~L~~~~~~~~ 127 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-PV---------DGWYKLLNQEEGEY 127 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-cc---------CceEECcCcccccc
Confidence 8999999999999998753 11 66888877777754
No 72
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.76 E-value=1.4e-17 Score=113.15 Aligned_cols=90 Identities=23% Similarity=0.391 Sum_probs=79.4
Q ss_pred CcccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----------------------------eEEEeecccCCCCC
Q 044346 8 RRTSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAK-----------------------------ENIKIRFIGNNVNP 57 (159)
Q Consensus 8 ~~~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~-----------------------------~~~~t~~~~~~~~P 57 (159)
...+.+.|.|+|++|++|+.++ .+.+||||.+.+.. ..++|.++.++.+|
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP 102 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNP 102 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCC
Confidence 3567889999999999999999 89999999998852 23688889999999
Q ss_pred ccccEEEEEeeCC-CCcEEEEEEEccCCCCCCccEEEEEeCccch
Q 044346 58 EWNEVFPFSTTYP-NVPIMLSVCDHDSFTKDDRMKDAKIDIREYM 101 (159)
Q Consensus 58 ~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~d~~lG~~~i~l~~l~ 101 (159)
.|||.|.|.+... ...|.|+|||++ +++||++.++++++.
T Consensus 103 ~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~ 143 (153)
T cd08676 103 VWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLP 143 (153)
T ss_pred ccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhC
Confidence 9999999998754 578999999987 789999999999977
No 73
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.75 E-value=5.8e-18 Score=148.54 Aligned_cols=122 Identities=18% Similarity=0.330 Sum_probs=105.0
Q ss_pred cccCcccceEEEEEEEEeeCCCCCCCCCCCcEEEEEEC-CeEEEeecccCCCCCccccEEEEEeeCC--CCcEEEEEEEc
Q 044346 5 DKGRRTSLLSLRLRIKQGVNLAIHDHSGSDPCVFVMMA-KENIKIRFIGNNVNPEWNEVFPFSTTYP--NVPIMLSVCDH 81 (159)
Q Consensus 5 ~~~~~~~~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~-~~~~~t~~~~~~~~P~w~e~~~~~~~~~--~~~l~~~v~d~ 81 (159)
|.-+....|.|.|+|++|++|. .+.+.+||||.+.++ +.+.+|++++++.||+|||.|.|.+..+ +..++|+|||+
T Consensus 1972 ~~~~~~~~G~L~V~V~~a~nl~-~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~ 2050 (2102)
T PLN03200 1972 ESLLQCLPGSLTVTIKRGNNLK-QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSK 2050 (2102)
T ss_pred HHHHhhCCcceEEEEeeccccc-cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEec
Confidence 4456677899999999999998 337899999999999 4478999999999999999999887765 47899999999
Q ss_pred cCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC--CcccE---EEEEEEEEe
Q 044346 82 DSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN--IECGK---LQVQLRYCN 137 (159)
Q Consensus 82 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~--~~~G~---l~l~l~~~~ 137 (159)
+.|++ +.+|++.+++.++..++.+ +.|+++.+ ...|. |++.++|.+
T Consensus 2051 d~f~k-d~~G~~~i~l~~vv~~~~~---------~~~~~L~~~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2051 NTFGK-SSLGKVTIQIDRVVMEGTY---------SGEYSLNPESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CccCC-CCCceEEEEHHHHhcCcee---------eeeeecCcccccCCCcceEEEEEEecC
Confidence 99955 5999999999999987776 66777765 67888 999999973
No 74
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.74 E-value=2e-17 Score=110.66 Aligned_cols=89 Identities=19% Similarity=0.278 Sum_probs=77.7
Q ss_pred cceEEEEEEEEeeCCCCCC-C--CCCCcEEEEEECC-----eEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEE
Q 044346 11 SLLSLRLRIKQGVNLAIHD-H--SGSDPCVFVMMAK-----ENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVC 79 (159)
Q Consensus 11 ~~~~L~v~v~~a~~L~~~~-~--~~~dpy~~v~~~~-----~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~ 79 (159)
..+.|.|.|++|+||+.++ . +.+||||++++.. .+.+|++.+++.||+|||.|.|.+... +..|.|+||
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~ 92 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVL 92 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEE
Confidence 4578999999999999987 3 4589999999872 356899999999999999999998763 568999999
Q ss_pred EccCCCCCCccEEEEEeCcc
Q 044346 80 DHDSFTKDDRMKDAKIDIRE 99 (159)
Q Consensus 80 d~~~~~~d~~lG~~~i~l~~ 99 (159)
|++.++++++||++.+.+..
T Consensus 93 d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 93 NQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred eCCCCcCcceeceEEecCcC
Confidence 99999999999999999865
No 75
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.74 E-value=2.1e-17 Score=110.49 Aligned_cols=89 Identities=19% Similarity=0.275 Sum_probs=77.6
Q ss_pred cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC---C--eEEEeecccCCCCCccccEEEEEeeC---CCCcEEEEEEEc
Q 044346 11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA---K--ENIKIRFIGNNVNPEWNEVFPFSTTY---PNVPIMLSVCDH 81 (159)
Q Consensus 11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~---~--~~~~t~~~~~~~~P~w~e~~~~~~~~---~~~~l~~~v~d~ 81 (159)
....|.|+|++|++|+..+ .+.+||||++++. . .+.+|++++++.||+|||+|.|.+.. .+..|.|+|||+
T Consensus 13 ~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~ 92 (136)
T cd08406 13 TAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAES 92 (136)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeC
Confidence 3567999999999999998 8899999999985 1 25588899999999999999999875 356899999999
Q ss_pred cCCCCCCccEEEEEeCcc
Q 044346 82 DSFTKDDRMKDAKIDIRE 99 (159)
Q Consensus 82 ~~~~~d~~lG~~~i~l~~ 99 (159)
+.++++++||++.+....
T Consensus 93 d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 93 TEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred CCCCCCCeeEEEEECCCC
Confidence 999999999999997653
No 76
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.74 E-value=8e-17 Score=104.99 Aligned_cols=107 Identities=24% Similarity=0.319 Sum_probs=82.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCcEEEEEECCe-EEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEccCCCCCCcc
Q 044346 15 LRLRIKQGVNLAIHDHSGSDPCVFVMMAKE-NIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHDSFTKDDRM 90 (159)
Q Consensus 15 L~v~v~~a~~L~~~~~~~~dpy~~v~~~~~-~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~~d~~l 90 (159)
|+|+|++|++|+.. +.+||||.+.++.. .++|++..+ .+|.|||+|.|.+... ...+.+.+||++....+.++
T Consensus 2 L~v~vi~a~~l~~~--~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~ 78 (117)
T cd08383 2 LRLRILEAKNLPSK--GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVI 78 (117)
T ss_pred eEEEEEEecCCCcC--CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEE
Confidence 78999999999986 78999999999864 468988888 9999999999998763 35788889998877666677
Q ss_pred EEEEEeCccchhhcccCCCCCceeeeEEeecCC-----CcccEEEEEEEE
Q 044346 91 KDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN-----IECGKLQVQLRY 135 (159)
Q Consensus 91 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~-----~~~G~l~l~l~~ 135 (159)
|.+.+. .+...+.. +.|+.+.+ ...|+|+|+++|
T Consensus 79 g~v~l~--~~~~~~~~---------~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 79 GKVALS--KLDLGQGK---------DEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEec--CcCCCCcc---------eeEEECccCCCCCCcCceEEEEEEC
Confidence 765554 43322111 66777754 347999999876
No 77
>PLN03008 Phospholipase D delta
Probab=99.74 E-value=1.1e-16 Score=130.84 Aligned_cols=118 Identities=23% Similarity=0.318 Sum_probs=98.4
Q ss_pred cceEEEEEEEEeeCCCCCC-------------------------------------------CCCCCcEEEEEECCe-EE
Q 044346 11 SLLSLRLRIKQGVNLAIHD-------------------------------------------HSGSDPCVFVMMAKE-NI 46 (159)
Q Consensus 11 ~~~~L~v~v~~a~~L~~~~-------------------------------------------~~~~dpy~~v~~~~~-~~ 46 (159)
..|.|.++|.+|++|+.++ .+.+||||++.++.. ..
T Consensus 12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~ 91 (868)
T PLN03008 12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLA 91 (868)
T ss_pred eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCccee
Confidence 4688999999999988521 135699999999854 55
Q ss_pred EeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC---
Q 044346 47 KIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN--- 123 (159)
Q Consensus 47 ~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~--- 123 (159)
+|+++.++.||+|||+|.|.+..+...|.|+|||++.++ +++||++.++++++..+... +.|+++.+
T Consensus 92 RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~v---------d~Wl~Ll~~~~ 161 (868)
T PLN03008 92 RTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERI---------SGWFPVLGASG 161 (868)
T ss_pred eEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCce---------EEEEEccccCC
Confidence 999999999999999999999988889999999999996 58999999999998775444 67777632
Q ss_pred ---CcccEEEEEEEEEeC
Q 044346 124 ---IECGKLQVQLRYCNL 138 (159)
Q Consensus 124 ---~~~G~l~l~l~~~~~ 138 (159)
...|+|+|+++|.|.
T Consensus 162 kp~k~~~kl~v~lqf~pv 179 (868)
T PLN03008 162 KPPKAETAIFIDMKFTPF 179 (868)
T ss_pred CCCCCCcEEEEEEEEEEc
Confidence 346899999999876
No 78
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.74 E-value=2.8e-17 Score=110.14 Aligned_cols=100 Identities=17% Similarity=0.271 Sum_probs=84.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCcEEEEEEC----CeEEEeecccCCCCCccccEEEEEeeCC----------------CCcE
Q 044346 15 LRLRIKQGVNLAIHDHSGSDPCVFVMMA----KENIKIRFIGNNVNPEWNEVFPFSTTYP----------------NVPI 74 (159)
Q Consensus 15 L~v~v~~a~~L~~~~~~~~dpy~~v~~~----~~~~~t~~~~~~~~P~w~e~~~~~~~~~----------------~~~l 74 (159)
|+|.|++|++|+.+..+.+|||+++++. ...++|+++.++.+|.|+|.|.|.+... ...|
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l 80 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL 80 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence 5789999999987766789999999998 6788999999999999999999997653 3589
Q ss_pred EEEEEEccCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC
Q 044346 75 MLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN 123 (159)
Q Consensus 75 ~~~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 123 (159)
.|+|||.+.++++++||++.+++.++...... ..|+.+..
T Consensus 81 ~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~---------~~W~~L~~ 120 (137)
T cd08675 81 RVELWHASMVSGDDFLGEVRIPLQGLQQAGSH---------QAWYFLQP 120 (137)
T ss_pred EEEEEcCCcCcCCcEEEEEEEehhhccCCCcc---------cceEecCC
Confidence 99999999988999999999999997743222 55766643
No 79
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.74 E-value=1.3e-16 Score=107.36 Aligned_cols=114 Identities=16% Similarity=0.157 Sum_probs=92.0
Q ss_pred cceEEEEEEEEeeCCCCCCCCCCCcEEEEEECCeEE-EeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccC-CC---
Q 044346 11 SLLSLRLRIKQGVNLAIHDHSGSDPCVFVMMAKENI-KIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDS-FT--- 85 (159)
Q Consensus 11 ~~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~~~~~-~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~-~~--- 85 (159)
....|.|.|.+|++|+.++ +|||.+.+++... +|+++.++.+|.|+|.|.|....+-..+.|.||..+. .+
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~ 84 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKK----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKD 84 (146)
T ss_pred EEEEEEEEEEEccCCCCcC----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccccc
Confidence 3457999999999998844 7999999998775 9999999999999999999877666789999986543 22
Q ss_pred CCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC-------------CcccEEEEEEEEEe
Q 044346 86 KDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN-------------IECGKLQVQLRYCN 137 (159)
Q Consensus 86 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~-------------~~~G~l~l~l~~~~ 137 (159)
++++||.+.|+++++...... +.|+++.+ ...+.|+++++|.+
T Consensus 85 ~~~~IG~V~Ip~~~l~~~~~v---------e~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 85 KSQLIGTVNIPVTDVSSRQFV---------EKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred CCcEEEEEEEEHHHhcCCCcc---------cEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 578999999999998864444 66776622 23479999999985
No 80
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.74 E-value=2.6e-17 Score=109.80 Aligned_cols=90 Identities=28% Similarity=0.352 Sum_probs=79.9
Q ss_pred ccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEE
Q 044346 10 TSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCD 80 (159)
Q Consensus 10 ~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d 80 (159)
...+.|.|+|++|++|+..+ .+.+||||++.+. ....+|+++.++.+|.|||+|.|.+... ...|.|+|||
T Consensus 10 ~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d 89 (133)
T cd08384 10 TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWD 89 (133)
T ss_pred CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEe
Confidence 34678999999999999999 8899999999985 2467899999999999999999998753 4689999999
Q ss_pred ccCCCCCCccEEEEEeCcc
Q 044346 81 HDSFTKDDRMKDAKIDIRE 99 (159)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~ 99 (159)
++..+++++||++.+++..
T Consensus 90 ~d~~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 90 KDIGKSNDYIGGLQLGINA 108 (133)
T ss_pred CCCCCCccEEEEEEEecCC
Confidence 9999899999999999975
No 81
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.73 E-value=5.9e-17 Score=108.49 Aligned_cols=89 Identities=22% Similarity=0.296 Sum_probs=78.5
Q ss_pred cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC--C---eEEEeecccCCCCCccccEEEEEeeC---CCCcEEEEEEEc
Q 044346 11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA--K---ENIKIRFIGNNVNPEWNEVFPFSTTY---PNVPIMLSVCDH 81 (159)
Q Consensus 11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~--~---~~~~t~~~~~~~~P~w~e~~~~~~~~---~~~~l~~~v~d~ 81 (159)
..+.|.|+|++|++|+..+ .+.+||||++.+. . ...+|+++.++.||.|+|+|.|.+.. ....|.|+|||+
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~ 92 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDS 92 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEEC
Confidence 3568999999999999999 8899999999985 2 35688899999999999999999865 245789999999
Q ss_pred cCCCCCCccEEEEEeCcc
Q 044346 82 DSFTKDDRMKDAKIDIRE 99 (159)
Q Consensus 82 ~~~~~d~~lG~~~i~l~~ 99 (159)
+.++++++||++.+++..
T Consensus 93 d~~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 93 DRVTKNEVIGRLVLGPKA 110 (136)
T ss_pred CCCCCCccEEEEEECCcC
Confidence 999999999999999988
No 82
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.72 E-value=4.4e-17 Score=109.12 Aligned_cols=91 Identities=24% Similarity=0.341 Sum_probs=79.3
Q ss_pred ccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEE
Q 044346 10 TSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCD 80 (159)
Q Consensus 10 ~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d 80 (159)
+..+.|.|.|++|++|+.++ .+.+||||++.+. ...++|+++.++.||.|+|.|.|.+... ...|.|+|||
T Consensus 12 ~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d 91 (136)
T cd08402 12 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLD 91 (136)
T ss_pred CCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEe
Confidence 45678999999999999998 8899999999984 1356888889999999999999998643 2479999999
Q ss_pred ccCCCCCCccEEEEEeCccc
Q 044346 81 HDSFTKDDRMKDAKIDIREY 100 (159)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~l 100 (159)
++.++++++||++.+++...
T Consensus 92 ~~~~~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 92 YDRIGKNDPIGKVVLGCNAT 111 (136)
T ss_pred CCCCCCCceeEEEEECCccC
Confidence 99999999999999999763
No 83
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.72 E-value=3.5e-18 Score=130.03 Aligned_cols=92 Identities=29% Similarity=0.401 Sum_probs=84.1
Q ss_pred ceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC--CCcEEEEEEEccC
Q 044346 12 LLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP--NVPIMLSVCDHDS 83 (159)
Q Consensus 12 ~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~--~~~l~~~v~d~~~ 83 (159)
...|+|.|.+|+||-+++ +|.+|||+++.+- ..+++|++++.++||+|||+|.|.+.+. ++.|.++||||+.
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr 258 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR 258 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc
Confidence 346889999999999999 9999999999986 4577999999999999999999999875 5799999999999
Q ss_pred CCCCCccEEEEEeCccchhh
Q 044346 84 FTKDDRMKDAKIDIREYMKD 103 (159)
Q Consensus 84 ~~~d~~lG~~~i~l~~l~~~ 103 (159)
.++++|+|...+.+++|.++
T Consensus 259 TsRNDFMGslSFgisEl~K~ 278 (683)
T KOG0696|consen 259 TSRNDFMGSLSFGISELQKA 278 (683)
T ss_pred cccccccceecccHHHHhhc
Confidence 99999999999999999874
No 84
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.72 E-value=1e-16 Score=105.09 Aligned_cols=87 Identities=25% Similarity=0.305 Sum_probs=75.4
Q ss_pred EEEEeeCCCCCC-CCCCCcEEEEEECCe-------EEEeecccCCCCCccccEEEEEeeC-CCCcEEEEEEEccC----C
Q 044346 18 RIKQGVNLAIHD-HSGSDPCVFVMMAKE-------NIKIRFIGNNVNPEWNEVFPFSTTY-PNVPIMLSVCDHDS----F 84 (159)
Q Consensus 18 ~v~~a~~L~~~~-~~~~dpy~~v~~~~~-------~~~t~~~~~~~~P~w~e~~~~~~~~-~~~~l~~~v~d~~~----~ 84 (159)
..++|++|+..+ .+.+||||++++... .++|+++.++.||.|+|.|.|.+.. ....+.|+|||++. .
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 347899999999 889999999999743 4799999999999999999998653 35689999999997 7
Q ss_pred CCCCccEEEEEeCccchhhc
Q 044346 85 TKDDRMKDAKIDIREYMKDV 104 (159)
Q Consensus 85 ~~d~~lG~~~i~l~~l~~~~ 104 (159)
+++++||++.+++.++..+.
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~ 104 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSP 104 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCC
Confidence 89999999999999987643
No 85
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.71 E-value=1e-16 Score=107.50 Aligned_cols=91 Identities=16% Similarity=0.258 Sum_probs=79.8
Q ss_pred ccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC---C---eEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEE
Q 044346 10 TSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA---K---ENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVC 79 (159)
Q Consensus 10 ~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~---~---~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~ 79 (159)
...+.|.|+|++|+||+..+ .+.+||||++++. + .+++|++..++.||+|||+|.|.+... +..|.|+||
T Consensus 12 ~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~ 91 (138)
T cd08408 12 ALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVY 91 (138)
T ss_pred CCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEE
Confidence 45688999999999999998 8899999999985 1 256899999999999999999998753 468999999
Q ss_pred EccCCCCCCccEEEEEeCccc
Q 044346 80 DHDSFTKDDRMKDAKIDIREY 100 (159)
Q Consensus 80 d~~~~~~d~~lG~~~i~l~~l 100 (159)
+++.++++++||++.+++...
T Consensus 92 ~~~~~~~~~~iG~v~l~~~~~ 112 (138)
T cd08408 92 NKRKMKRKEMIGWFSLGLNSS 112 (138)
T ss_pred ECCCCCCCcEEEEEEECCcCC
Confidence 999999999999999988754
No 86
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.71 E-value=1e-16 Score=107.33 Aligned_cols=90 Identities=23% Similarity=0.364 Sum_probs=79.0
Q ss_pred cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEc
Q 044346 11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDH 81 (159)
Q Consensus 11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~ 81 (159)
..+.|.|+|++|++|+..+ .+.+||||++.+. ....+|+++.++.||.|||.|.|.+... +..|.|+|||+
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~ 92 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDK 92 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEEC
Confidence 4678999999999999988 8899999999873 2356899999999999999999997642 45899999999
Q ss_pred cCCCCCCccEEEEEeCccc
Q 044346 82 DSFTKDDRMKDAKIDIREY 100 (159)
Q Consensus 82 ~~~~~d~~lG~~~i~l~~l 100 (159)
+.++++++||++.+++.+.
T Consensus 93 ~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 93 DRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred CCCCCCcEeEEEEECCccC
Confidence 9999999999999999875
No 87
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.71 E-value=4.7e-16 Score=100.53 Aligned_cols=80 Identities=15% Similarity=0.288 Sum_probs=69.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEc-------c
Q 044346 15 LRLRIKQGVNLAIHDHSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDH-------D 82 (159)
Q Consensus 15 L~v~v~~a~~L~~~~~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~-------~ 82 (159)
|.|+|.+|+||+ +.+||||++.+. ....+|+++.+|+||+|||+|.+.+. ....|.+.|||+ +
T Consensus 1 L~V~V~~A~~L~----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~-~s~~L~~~v~d~~~~~~~~d 75 (118)
T cd08686 1 LNVIVHSAQGFK----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE-GSQTLRILCYEKCYSKVKLD 75 (118)
T ss_pred CEEEEEeCCCCC----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC-CCCEEEEEEEEccccccccc
Confidence 679999999995 468999999886 24689999999999999999999997 578999999998 4
Q ss_pred CCCCCCccEEEEEeCcc
Q 044346 83 SFTKDDRMKDAKIDIRE 99 (159)
Q Consensus 83 ~~~~d~~lG~~~i~l~~ 99 (159)
..+.|+.+|.+.+.|+.
T Consensus 76 ~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 76 GEGTDAIMGKGQIQLDP 92 (118)
T ss_pred ccCcccEEEEEEEEECH
Confidence 66789999988888765
No 88
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.71 E-value=1.3e-16 Score=106.57 Aligned_cols=90 Identities=26% Similarity=0.338 Sum_probs=78.0
Q ss_pred ccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEE
Q 044346 10 TSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCD 80 (159)
Q Consensus 10 ~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d 80 (159)
...+.|+|+|++|++|+.++ .+.+||||++.+. ....+|+++.++.+|.|+|.|.|.+... ...|.|+|||
T Consensus 11 ~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d 90 (134)
T cd08403 11 PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVD 90 (134)
T ss_pred CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence 45688999999999999999 8899999999984 2356888888999999999999987643 2469999999
Q ss_pred ccCCCCCCccEEEEEeCcc
Q 044346 81 HDSFTKDDRMKDAKIDIRE 99 (159)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~ 99 (159)
++.++++++||++.+++..
T Consensus 91 ~~~~~~~~~IG~~~l~~~~ 109 (134)
T cd08403 91 YDRVGHNELIGVCRVGPNA 109 (134)
T ss_pred CCCCCCCceeEEEEECCCC
Confidence 9999999999999998774
No 89
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.70 E-value=5e-17 Score=129.13 Aligned_cols=134 Identities=19% Similarity=0.179 Sum_probs=116.7
Q ss_pred eEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-eEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCcc
Q 044346 13 LSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAK-ENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRM 90 (159)
Q Consensus 13 ~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~-~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~l 90 (159)
..|.|+|.+|+||+..+ .|..||||++.+++ ...+|.++.+++.|.|.|.|.|.+...-..|.|.|||.| +++|+.|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~I 83 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDII 83 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-ccccccc
Confidence 45899999999999999 99999999999994 566999999999999999999999988899999999999 8999999
Q ss_pred EEEEEeCccchhhcccCCCCCceeeeEEeecC-----CCcccEEEEEEEEEeCCCCCce-EEEEEecccccc
Q 044346 91 KDAKIDIREYMKDVKINLEPRNAVKDLDLKLT-----NIECGKLQVQLRYCNLPGSKGF-IMFYECSSLCSS 156 (159)
Q Consensus 91 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~-----~~~~G~l~l~l~~~~~~~~~~l-~~~~~~~~l~~~ 156 (159)
|.+.+.=++|...... +-|+.+. .+..|+|++++++.+..++.++ +.++.++.+++-
T Consensus 84 GKvai~re~l~~~~~~---------d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~ 146 (800)
T KOG2059|consen 84 GKVAIKREDLHMYPGK---------DTWFSLQPVDPDSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPI 146 (800)
T ss_pred ceeeeeHHHHhhCCCC---------ccceeccccCCChhhceeEEEEEEeccccCCCcchhhhhhhcccCce
Confidence 9999988886653322 5576664 3678999999999988888899 999999888653
No 90
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.70 E-value=1.6e-16 Score=106.24 Aligned_cols=87 Identities=25% Similarity=0.376 Sum_probs=75.3
Q ss_pred cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEc
Q 044346 11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDH 81 (159)
Q Consensus 11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~ 81 (159)
..+.|.|.|++|++|+..+ .+.+||||++++. ..+.+|+++.++.||.|||+|.|.+... +..|.|+|||+
T Consensus 12 ~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~ 91 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGH 91 (135)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeC
Confidence 4578999999999999999 8899999999973 2356889999999999999999998643 34699999999
Q ss_pred cCCCCCCccEEEEEeC
Q 044346 82 DSFTKDDRMKDAKIDI 97 (159)
Q Consensus 82 ~~~~~d~~lG~~~i~l 97 (159)
+..+++++||++.+..
T Consensus 92 d~~~~~~~iG~~~l~~ 107 (135)
T cd08410 92 NVKSSNDFIGRIVIGQ 107 (135)
T ss_pred CCCCCCcEEEEEEEcC
Confidence 9999999999988654
No 91
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.70 E-value=5.4e-17 Score=108.20 Aligned_cols=88 Identities=24% Similarity=0.363 Sum_probs=79.0
Q ss_pred ceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEcc
Q 044346 12 LLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAK-----ENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHD 82 (159)
Q Consensus 12 ~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~-----~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~ 82 (159)
.+.|.|+|.+|++|+..+ .+.+||||++++.. ..++|+++.++.+|.|+|+|.|.+... ...|.|+|||++
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~ 92 (134)
T cd00276 13 AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKD 92 (134)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecC
Confidence 478999999999999988 88999999999862 256889999999999999999998764 468999999999
Q ss_pred CCCCCCccEEEEEeCcc
Q 044346 83 SFTKDDRMKDAKIDIRE 99 (159)
Q Consensus 83 ~~~~d~~lG~~~i~l~~ 99 (159)
.++++++||.+.+++++
T Consensus 93 ~~~~~~~lG~~~i~l~~ 109 (134)
T cd00276 93 SVGRNEVIGQVVLGPDS 109 (134)
T ss_pred CCCCCceeEEEEECCCC
Confidence 98899999999999998
No 92
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.70 E-value=1.2e-15 Score=100.92 Aligned_cols=110 Identities=30% Similarity=0.417 Sum_probs=87.2
Q ss_pred eEEEEEEEEeeCCCCCC---CCCCCcEEEEEEC------CeEEEeecccCCC-CCccccEEEEEeeCCC-CcEEEEEEEc
Q 044346 13 LSLRLRIKQGVNLAIHD---HSGSDPCVFVMMA------KENIKIRFIGNNV-NPEWNEVFPFSTTYPN-VPIMLSVCDH 81 (159)
Q Consensus 13 ~~L~v~v~~a~~L~~~~---~~~~dpy~~v~~~------~~~~~t~~~~~~~-~P~w~e~~~~~~~~~~-~~l~~~v~d~ 81 (159)
..|+|+|++|++|+..+ .+..||||++++. ..+++|+++.++. +|.|+|.|.|.+..+. ..|.|+|||+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 46899999999999876 5788999999984 4567888887765 9999999999987654 5789999999
Q ss_pred cCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecC---C--CcccEEEEEEEE
Q 044346 82 DSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLT---N--IECGKLQVQLRY 135 (159)
Q Consensus 82 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~---~--~~~G~l~l~l~~ 135 (159)
+.. ++++||.+.++++++..+ ..++.+. + ...|.|.+++++
T Consensus 82 ~~~-~~~~iG~~~~~l~~l~~g------------~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSG-DDDFLGQACLPLDSLRQG------------YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCC-CCcEeEEEEEEhHHhcCc------------eEEEEecCCCCCCCcceeEEEEEEE
Confidence 988 889999999999997432 1122331 2 456888888764
No 93
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.70 E-value=2.1e-16 Score=104.77 Aligned_cols=90 Identities=17% Similarity=0.195 Sum_probs=77.1
Q ss_pred ccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCC-CCccccEEEEEeeCC--CCcEEEEEEE
Q 044346 10 TSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNV-NPEWNEVFPFSTTYP--NVPIMLSVCD 80 (159)
Q Consensus 10 ~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~-~P~w~e~~~~~~~~~--~~~l~~~v~d 80 (159)
...+.|+|.|++|++|+++. .+..||||++.+. ..+++|++++++. +|.|||.|.|.+... +..|.+++||
T Consensus 11 p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d 90 (135)
T cd08692 11 AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYS 90 (135)
T ss_pred CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEe
Confidence 45678999999999999986 6777999999876 3467899998885 699999999998864 3478889999
Q ss_pred ccCCCCCCccEEEEEeCcc
Q 044346 81 HDSFTKDDRMKDAKIDIRE 99 (159)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~ 99 (159)
++..+++++||++.+..+.
T Consensus 91 ~~~~~~n~~IG~v~lG~~~ 109 (135)
T cd08692 91 RSSVRRKHFLGQVWISSDS 109 (135)
T ss_pred CCCCcCCceEEEEEECCcc
Confidence 9999999999999999876
No 94
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.70 E-value=5.1e-16 Score=102.18 Aligned_cols=92 Identities=23% Similarity=0.359 Sum_probs=79.2
Q ss_pred cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEE-eeCC---CCcEEEEEEE
Q 044346 11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFS-TTYP---NVPIMLSVCD 80 (159)
Q Consensus 11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~-~~~~---~~~l~~~v~d 80 (159)
..+.|.|+|.+|++|+..+ .+.+|||+++.+. ....+|+++.++.+|.|++.|.|. +... ...+.|++||
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d 92 (123)
T cd04035 13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLD 92 (123)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEE
Confidence 3578999999999999988 7899999999874 346799999999999999999996 3321 4689999999
Q ss_pred ccCCCCCCccEEEEEeCccchhh
Q 044346 81 HDSFTKDDRMKDAKIDIREYMKD 103 (159)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~l~~~ 103 (159)
++.+ ++++||++.++++++..+
T Consensus 93 ~~~~-~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 93 EDRF-GNDFLGETRIPLKKLKPN 114 (123)
T ss_pred cCCc-CCeeEEEEEEEcccCCCC
Confidence 9988 889999999999997764
No 95
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.68 E-value=3e-16 Score=105.18 Aligned_cols=90 Identities=21% Similarity=0.279 Sum_probs=77.0
Q ss_pred cceEEEEEEEEeeCCCCCCCCCCCcEEEEEECC-----eEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEcc
Q 044346 11 SLLSLRLRIKQGVNLAIHDHSGSDPCVFVMMAK-----ENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHD 82 (159)
Q Consensus 11 ~~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~~-----~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~ 82 (159)
..+.|.|+|.+|++|+..+.+.+||||++.+.. .+++|++..++.||.|||.|.|.+... ...|.|+||+++
T Consensus 13 ~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~ 92 (137)
T cd08409 13 TLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSG 92 (137)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCC
Confidence 357899999999999987766799999999762 366888989999999999999998642 368999999999
Q ss_pred CCCCCCccEEEEEeCccc
Q 044346 83 SFTKDDRMKDAKIDIREY 100 (159)
Q Consensus 83 ~~~~d~~lG~~~i~l~~l 100 (159)
..+++++||++.+.....
T Consensus 93 ~~~~~~~lG~v~ig~~~~ 110 (137)
T cd08409 93 GVRKSKLLGRVVLGPFMY 110 (137)
T ss_pred CCCCcceEEEEEECCccc
Confidence 999999999999986543
No 96
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.65 E-value=1.2e-15 Score=98.41 Aligned_cols=85 Identities=26% Similarity=0.340 Sum_probs=72.5
Q ss_pred EEEEEeeCCCCCC-CCCCCcEEEEEECC------eEEEeecccCCCCCccccEEEEEeeC-----CCCcEEEEEEEccCC
Q 044346 17 LRIKQGVNLAIHD-HSGSDPCVFVMMAK------ENIKIRFIGNNVNPEWNEVFPFSTTY-----PNVPIMLSVCDHDSF 84 (159)
Q Consensus 17 v~v~~a~~L~~~~-~~~~dpy~~v~~~~------~~~~t~~~~~~~~P~w~e~~~~~~~~-----~~~~l~~~v~d~~~~ 84 (159)
+..++|++|+..+ .+.+|||+++++.. ..++|+++.++.+|.|+ .|.+.+.. ....|.|+|||++.+
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 3456899999999 88999999998753 25799999999999999 67776432 256999999999999
Q ss_pred CCCCccEEEEEeCccchh
Q 044346 85 TKDDRMKDAKIDIREYMK 102 (159)
Q Consensus 85 ~~d~~lG~~~i~l~~l~~ 102 (159)
++|++||++.++++++..
T Consensus 83 ~~d~~iG~~~~~l~~l~~ 100 (110)
T cd04047 83 GKHDLIGEFETTLDELLK 100 (110)
T ss_pred CCCcEEEEEEEEHHHHhc
Confidence 999999999999999874
No 97
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=9.5e-16 Score=121.60 Aligned_cols=119 Identities=24% Similarity=0.379 Sum_probs=103.3
Q ss_pred ccCcccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCC
Q 044346 6 KGRRTSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSF 84 (159)
Q Consensus 6 ~~~~~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~ 84 (159)
+|.......++++|++|++|-.++ .|.+|||+++.+++.+.+|+++...+||+|+|.|+|.+.+....+++.|||.++.
T Consensus 288 egsskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~d 367 (1283)
T KOG1011|consen 288 EGSSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDND 367 (1283)
T ss_pred ccccccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCccc
Confidence 377788889999999999999999 9999999999999999999999999999999999999999999999999998752
Q ss_pred -----------CCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecC-----CCcccEEEEEEEE
Q 044346 85 -----------TKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLT-----NIECGKLQVQLRY 135 (159)
Q Consensus 85 -----------~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~-----~~~~G~l~l~l~~ 135 (159)
-.|+|+|++.+.+..|..+ + +.|+.+. ....|.|++++..
T Consensus 368 lksklrqkl~resddflgqtvievrtlsge--m---------dvwynlekrtdksavsgairlhisv 423 (1283)
T KOG1011|consen 368 LKSKLRQKLTRESDDFLGQTVIEVRTLSGE--M---------DVWYNLEKRTDKSAVSGAIRLHISV 423 (1283)
T ss_pred HHHHHHHHhhhcccccccceeEEEEecccc--h---------hhhcchhhccchhhccceEEEEEEE
Confidence 3588999999998887653 3 5576663 2568988888865
No 98
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.61 E-value=5e-15 Score=90.63 Aligned_cols=80 Identities=34% Similarity=0.509 Sum_probs=71.9
Q ss_pred EEEEEEEeeCCCCCC-CCCCCcEEEEEECC---eEEEeecccCCCCCccccEEEEEeeCC-CCcEEEEEEEccCCCCCCc
Q 044346 15 LRLRIKQGVNLAIHD-HSGSDPCVFVMMAK---ENIKIRFIGNNVNPEWNEVFPFSTTYP-NVPIMLSVCDHDSFTKDDR 89 (159)
Q Consensus 15 L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~---~~~~t~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~d~~ 89 (159)
|+|+|.+|++|+..+ .+..+||+.+.+.. ..++|+++.++.+|.|++.|.|.+..+ ...|.|+|||++..++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999988 88999999999985 678999999999999999999996654 4569999999999988999
Q ss_pred cEEEE
Q 044346 90 MKDAK 94 (159)
Q Consensus 90 lG~~~ 94 (159)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99874
No 99
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.50 E-value=5.6e-13 Score=83.49 Aligned_cols=89 Identities=30% Similarity=0.531 Sum_probs=79.2
Q ss_pred EEEEEEEeeCCCCCC-CCCCCcEEEEEECCe---EEEeecccCCCCCccccEEEEEeeCC-CCcEEEEEEEccCCCCCCc
Q 044346 15 LRLRIKQGVNLAIHD-HSGSDPCVFVMMAKE---NIKIRFIGNNVNPEWNEVFPFSTTYP-NVPIMLSVCDHDSFTKDDR 89 (159)
Q Consensus 15 L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~---~~~t~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~d~~ 89 (159)
|.|.|.+++++.... .+..+||+.+.+... ..+|+...++.+|.|++.|.|.+... ...+.|+||++...+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 679999999999887 578999999999854 78999999988999999999998876 8899999999998877899
Q ss_pred cEEEEEeCccchhh
Q 044346 90 MKDAKIDIREYMKD 103 (159)
Q Consensus 90 lG~~~i~l~~l~~~ 103 (159)
+|.+.+++.++..+
T Consensus 82 ~G~~~~~l~~~~~~ 95 (101)
T smart00239 82 IGQVTIPLSDLLLG 95 (101)
T ss_pred eEEEEEEHHHcccC
Confidence 99999999887653
No 100
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.48 E-value=9.8e-13 Score=109.98 Aligned_cols=140 Identities=24% Similarity=0.362 Sum_probs=111.8
Q ss_pred CcccceEEEEEEEEeeCCCCCC---CCCCCcEEEEEEC-CeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccC
Q 044346 8 RRTSLLSLRLRIKQGVNLAIHD---HSGSDPCVFVMMA-KENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDS 83 (159)
Q Consensus 8 ~~~~~~~L~v~v~~a~~L~~~~---~~~~dpy~~v~~~-~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~ 83 (159)
...+.|++.++|.+|+++...+ .+..|||+++.+. ....+|++..++.||+|||++.+.+..-++.|.+++||.+.
T Consensus 431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~ 510 (1227)
T COG5038 431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNS 510 (1227)
T ss_pred cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccc
Confidence 5678999999999999999877 7899999999977 33449999999999999999999998778999999999999
Q ss_pred CCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCCCcccEEEEEEEEEeCC--------------CCC-ce--EE
Q 044346 84 FTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRYCNLP--------------GSK-GF--IM 146 (159)
Q Consensus 84 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~~~~~--------------~~~-~l--~~ 146 (159)
+.+|+.+|.+.++|..|..+....-+ ...+.......|+|...++|.+.. +.+ |+ +.
T Consensus 511 ~~sd~vvG~~~l~L~~L~~~~~~~ne------~~e~~~~~k~vGrL~yDl~ffp~~e~k~~~~~s~e~~ed~n~GI~k~t 584 (1227)
T COG5038 511 FKSDKVVGSTQLDLALLHQNPVKKNE------LYEFLRNTKNVGRLTYDLRFFPVIEDKKELKGSVEPLEDSNTGILKVT 584 (1227)
T ss_pred cCCcceeeeEEechHHhhhccccccc------eeeeeccCccceEEEEeeeeecccCCccccccccCCcccCCcceeEEE
Confidence 99999999999999998875433111 111222336678999999886442 223 55 78
Q ss_pred EEEeccc
Q 044346 147 FYECSSL 153 (159)
Q Consensus 147 ~~~~~~l 153 (159)
+.++.+|
T Consensus 585 l~~~~~l 591 (1227)
T COG5038 585 LREVKAL 591 (1227)
T ss_pred eeccccc
Confidence 8888877
No 101
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.47 E-value=1.1e-12 Score=81.83 Aligned_cols=87 Identities=32% Similarity=0.578 Sum_probs=78.5
Q ss_pred EEEEEEEeeCCCCCC-CCCCCcEEEEEECC-eEEEeecccCCCCCccccEEEEEeeC-CCCcEEEEEEEccCCCCCCccE
Q 044346 15 LRLRIKQGVNLAIHD-HSGSDPCVFVMMAK-ENIKIRFIGNNVNPEWNEVFPFSTTY-PNVPIMLSVCDHDSFTKDDRMK 91 (159)
Q Consensus 15 L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~-~~~~t~~~~~~~~P~w~e~~~~~~~~-~~~~l~~~v~d~~~~~~d~~lG 91 (159)
|.|.+.+|++++... ....+||+.+.+.. ...+|.+...+.+|.|++.|.+.+.. ....+.|++|+++..+.++++|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 468999999998866 77899999999986 88899999999999999999999887 5788999999999888789999
Q ss_pred EEEEeCccch
Q 044346 92 DAKIDIREYM 101 (159)
Q Consensus 92 ~~~i~l~~l~ 101 (159)
.+.+++.++.
T Consensus 81 ~~~~~l~~l~ 90 (102)
T cd00030 81 EVEIPLSELL 90 (102)
T ss_pred EEEEeHHHhh
Confidence 9999999977
No 102
>PLN02270 phospholipase D alpha
Probab=99.42 E-value=7.8e-12 Score=102.61 Aligned_cols=120 Identities=20% Similarity=0.235 Sum_probs=98.2
Q ss_pred ccceEEEEEEEEeeCCCCC-----------------C--CCCCCcEEEEEECCe-EEEeecccC-CCCCccccEEEEEee
Q 044346 10 TSLLSLRLRIKQGVNLAIH-----------------D--HSGSDPCVFVMMAKE-NIKIRFIGN-NVNPEWNEVFPFSTT 68 (159)
Q Consensus 10 ~~~~~L~v~v~~a~~L~~~-----------------~--~~~~dpy~~v~~~~~-~~~t~~~~~-~~~P~w~e~~~~~~~ 68 (159)
-..|.|.++|.+|++|+.+ . .+.++||+++.+++. ..+|+++.+ ..||.|+|+|.+++.
T Consensus 5 llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~a 84 (808)
T PLN02270 5 LLHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCA 84 (808)
T ss_pred eeecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeec
Confidence 4578999999999999863 1 256799999999954 559999987 469999999999999
Q ss_pred CCCCcEEEEEEEccCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC------CcccEEEEEEEEEeCC
Q 044346 69 YPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN------IECGKLQVQLRYCNLP 139 (159)
Q Consensus 69 ~~~~~l~~~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~------~~~G~l~l~l~~~~~~ 139 (159)
.....+.|.|.|.+.++. ++||.+.+|.+++..+..+ +.|+++-+ ....+|+++++|.+..
T Consensus 85 h~~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i---------~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~ 151 (808)
T PLN02270 85 HMASNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEV---------DRWVEILDNDKNPIHGGSKIHVKLQYFEVT 151 (808)
T ss_pred cCcceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCcc---------ccEEeccCCCCCcCCCCCEEEEEEEEEEcc
Confidence 888999999999999966 6999999999999886655 55766522 2235999999998753
No 103
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.40 E-value=3.8e-12 Score=84.34 Aligned_cols=88 Identities=22% Similarity=0.266 Sum_probs=74.2
Q ss_pred EEEEEEEeeCCCCCC---CC--CCCcEEEEEEC---CeEEEeecccCCCC--CccccEEEEEeeCC--------------
Q 044346 15 LRLRIKQGVNLAIHD---HS--GSDPCVFVMMA---KENIKIRFIGNNVN--PEWNEVFPFSTTYP-------------- 70 (159)
Q Consensus 15 L~v~v~~a~~L~~~~---~~--~~dpy~~v~~~---~~~~~t~~~~~~~~--P~w~e~~~~~~~~~-------------- 70 (159)
|+|.|.++++++... .| .+|||++..+. ..+++|.+..+++| |.||+.|.|.+..+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 789999999966533 45 49999999887 46789999999888 99999999886551
Q ss_pred ----------CCcEEEEEEEccCCCCCCccEEEEEeCccchh
Q 044346 71 ----------NVPIMLSVCDHDSFTKDDRMKDAKIDIREYMK 102 (159)
Q Consensus 71 ----------~~~l~~~v~d~~~~~~d~~lG~~~i~l~~l~~ 102 (159)
...|.++|||.|.+++|+++|++.++|..+..
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~ 123 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPR 123 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccc
Confidence 24789999999999999999999999998654
No 104
>PLN02223 phosphoinositide phospholipase C
Probab=99.35 E-value=2.1e-11 Score=96.51 Aligned_cols=92 Identities=25% Similarity=0.394 Sum_probs=76.7
Q ss_pred ceEEEEEEEEeeCCCCC-----C-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCCCC-cEEEEEE
Q 044346 12 LLSLRLRIKQGVNLAIH-----D-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYPNV-PIMLSVC 79 (159)
Q Consensus 12 ~~~L~v~v~~a~~L~~~-----~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~-~l~~~v~ 79 (159)
...|.|+|+.|++++.. + ....||||+|.+. ...++|.+..++.||.|||+|.|.+..++. .|.|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 35799999999987521 2 4568999999986 335577777789999999999999988875 6899999
Q ss_pred EccCCCCCCccEEEEEeCccchhh
Q 044346 80 DHDSFTKDDRMKDAKIDIREYMKD 103 (159)
Q Consensus 80 d~~~~~~d~~lG~~~i~l~~l~~~ 103 (159)
|++..+.++|+|++.+|+..|..+
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~G 511 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEG 511 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCC
Confidence 999988999999999999998764
No 105
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=5.9e-12 Score=98.42 Aligned_cols=89 Identities=26% Similarity=0.330 Sum_probs=78.2
Q ss_pred cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEc
Q 044346 11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDH 81 (159)
Q Consensus 11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~ 81 (159)
..|.|+|.|.+|++|+.++ .+.+||||++++- ..+.+|.+.+++.||+|||+|.|.+... +..+.++|||+
T Consensus 296 ~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~ 375 (421)
T KOG1028|consen 296 TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDH 375 (421)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEc
Confidence 4689999999999999999 9999999999876 3466888999999999999999987753 35889999999
Q ss_pred cCCCCCCccEEEEEeCcc
Q 044346 82 DSFTKDDRMKDAKIDIRE 99 (159)
Q Consensus 82 ~~~~~d~~lG~~~i~l~~ 99 (159)
+.++++++||.+.+....
T Consensus 376 d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 376 DTLGSNDLIGRCILGSDS 393 (421)
T ss_pred ccccccceeeEEEecCCC
Confidence 999999999998887664
No 106
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.32 E-value=9.2e-12 Score=104.30 Aligned_cols=102 Identities=25% Similarity=0.335 Sum_probs=90.7
Q ss_pred ccccCcccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCe-EEEeecccCCCCCccccEEEEEeeCC-CCcEEEEEEE
Q 044346 4 ADKGRRTSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKE-NIKIRFIGNNVNPEWNEVFPFSTTYP-NVPIMLSVCD 80 (159)
Q Consensus 4 ~~~~~~~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~-~~~t~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d 80 (159)
....+....|-|+|.+..|.||+..+ ++-+||||.+.+..+ .++|+++++++||.|||.+..++.+. ...+.+.|+|
T Consensus 1031 ~~~emv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~D 1110 (1227)
T COG5038 1031 PPVEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVND 1110 (1227)
T ss_pred CcceeecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEee
Confidence 34466777899999999999999999 888999999999844 88999999999999999999998865 6789999999
Q ss_pred ccCCCCCCccEEEEEeCccchhhcc
Q 044346 81 HDSFTKDDRMKDAKIDIREYMKDVK 105 (159)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~l~~~~~ 105 (159)
++...+++.||.+.++|+.+..++.
T Consensus 1111 wd~~~knd~lg~~~idL~~l~~~~~ 1135 (1227)
T COG5038 1111 WDSGEKNDLLGTAEIDLSKLEPGGT 1135 (1227)
T ss_pred cccCCCccccccccccHhhcCcCCc
Confidence 9999999999999999999876543
No 107
>PLN02952 phosphoinositide phospholipase C
Probab=99.25 E-value=2.4e-10 Score=92.09 Aligned_cols=92 Identities=24% Similarity=0.348 Sum_probs=76.4
Q ss_pred ceEEEEEEEEeeCCCCC------C-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCCCC-cEEEEE
Q 044346 12 LLSLRLRIKQGVNLAIH------D-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYPNV-PIMLSV 78 (159)
Q Consensus 12 ~~~L~v~v~~a~~L~~~------~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~-~l~~~v 78 (159)
...|.|+|+.|++++.. + ....|||+.+.+. ..+.+|+++.++.||.|+|+|.|.+..++. .+.|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46799999999887532 1 2345899999876 356689999988999999999999887764 678999
Q ss_pred EEccCCCCCCccEEEEEeCccchhh
Q 044346 79 CDHDSFTKDDRMKDAKIDIREYMKD 103 (159)
Q Consensus 79 ~d~~~~~~d~~lG~~~i~l~~l~~~ 103 (159)
||++..+.++|+|++.+|+..|..+
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~G 573 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPG 573 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCC
Confidence 9999988899999999999998763
No 108
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.21 E-value=7.1e-10 Score=89.12 Aligned_cols=92 Identities=28% Similarity=0.320 Sum_probs=76.0
Q ss_pred ceEEEEEEEEeeCCC--C----CC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCCC-CcEEEEE
Q 044346 12 LLSLRLRIKQGVNLA--I----HD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYPN-VPIMLSV 78 (159)
Q Consensus 12 ~~~L~v~v~~a~~L~--~----~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~~-~~l~~~v 78 (159)
...|.|+|+.|++++ . .+ ....|||+.+.+. ..+.+|+++.++.+|.|+|.|.|.+..++ ..+.|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 457999999998753 1 11 3467999999885 34668999988899999999999988776 4779999
Q ss_pred EEccCCCCCCccEEEEEeCccchhh
Q 044346 79 CDHDSFTKDDRMKDAKIDIREYMKD 103 (159)
Q Consensus 79 ~d~~~~~~d~~lG~~~i~l~~l~~~ 103 (159)
+|+|..+.++|+|+..+|+..|..+
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~G 555 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQG 555 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCc
Confidence 9999888899999999999998764
No 109
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.20 E-value=1.8e-10 Score=92.71 Aligned_cols=92 Identities=24% Similarity=0.291 Sum_probs=76.5
Q ss_pred ceEEEEEEEEeeCCCCC------C-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCCC-CcEEEEE
Q 044346 12 LLSLRLRIKQGVNLAIH------D-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYPN-VPIMLSV 78 (159)
Q Consensus 12 ~~~L~v~v~~a~~L~~~------~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~~-~~l~~~v 78 (159)
...|.|+|..|++++.. + ....||||++.+- ..+.+|++..++.||.|+|+|.|.+..++ ..|.|.|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 46799999999987521 2 3457999999886 33568888888999999999999988776 4779999
Q ss_pred EEccCCCCCCccEEEEEeCccchhh
Q 044346 79 CDHDSFTKDDRMKDAKIDIREYMKD 103 (159)
Q Consensus 79 ~d~~~~~~d~~lG~~~i~l~~l~~~ 103 (159)
+|++...+|+|+|+..+|+..|..+
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~G 572 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQG 572 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCc
Confidence 9999988999999999999998764
No 110
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.19 E-value=3.1e-10 Score=91.97 Aligned_cols=114 Identities=25% Similarity=0.394 Sum_probs=86.8
Q ss_pred EEEEEEEEeeCCCCCC-C----CCCCcEEEEEEC-----CeEEEee-cccCCCCCccccEEEEEeeCCCC-cEEEEEEEc
Q 044346 14 SLRLRIKQGVNLAIHD-H----SGSDPCVFVMMA-----KENIKIR-FIGNNVNPEWNEVFPFSTTYPNV-PIMLSVCDH 81 (159)
Q Consensus 14 ~L~v~v~~a~~L~~~~-~----~~~dpy~~v~~~-----~~~~~t~-~~~~~~~P~w~e~~~~~~~~~~~-~l~~~v~d~ 81 (159)
.|.|.|..|+++++.. . ...|||+.+.+- ....+|+ +..++-+|.|+|+|.|.+..|+. -+.|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 6999999999766543 2 457899999876 3466888 44579999999999999998875 679999999
Q ss_pred cCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecC---CCcccEEEEEEEEEe
Q 044346 82 DSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLT---NIECGKLQVQLRYCN 137 (159)
Q Consensus 82 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~---~~~~G~l~l~l~~~~ 137 (159)
+..++|+|+|++.+|+..|..+-. .+.|... .-....|.+++++.+
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyR----------hVpL~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYR----------HVPLLSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred CCCCcccccceeeccHHHhhCcee----------eeeecCCCCccccceeEEEEEEEec
Confidence 999999999999999999876311 1111111 134567888887764
No 111
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.18 E-value=2.3e-10 Score=90.61 Aligned_cols=125 Identities=21% Similarity=0.344 Sum_probs=102.0
Q ss_pred ceEEEEEEEEeeCCCCCC--CCCCCcEEEEEECCeEEEeecccCCCCCccc-cEEEEEeeCC---CCcEEEEEEEccCCC
Q 044346 12 LLSLRLRIKQGVNLAIHD--HSGSDPCVFVMMAKENIKIRFIGNNVNPEWN-EVFPFSTTYP---NVPIMLSVCDHDSFT 85 (159)
Q Consensus 12 ~~~L~v~v~~a~~L~~~~--~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~-e~~~~~~~~~---~~~l~~~v~d~~~~~ 85 (159)
.|.|-|+|..|++||-++ +...|.|+.+.+....++|.+..+++||.|| +.|.|++... ++.|++.++|++..+
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtys 81 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYS 81 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccc
Confidence 467889999999999999 6778999999999999999999999999999 7899998763 579999999999999
Q ss_pred CCCccEEEEEeCccchhhcc-cCCCCCceeeeEEeecCC---CcccEEEEEEEEE
Q 044346 86 KDDRMKDAKIDIREYMKDVK-INLEPRNAVKDLDLKLTN---IECGKLQVQLRYC 136 (159)
Q Consensus 86 ~d~~lG~~~i~l~~l~~~~~-~~~~~~~~~~~~~~~l~~---~~~G~l~l~l~~~ 136 (159)
.++-||.+.++++.|..+.. ...+....+..-|++.-+ ..+|+|.+-++.-
T Consensus 82 andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkvd 136 (1169)
T KOG1031|consen 82 ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKVD 136 (1169)
T ss_pred cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEEe
Confidence 99999999999999765422 222222234466776633 6789998877653
No 112
>PLN02228 Phosphoinositide phospholipase C
Probab=99.17 E-value=1.1e-09 Score=87.81 Aligned_cols=114 Identities=20% Similarity=0.239 Sum_probs=86.8
Q ss_pred ceEEEEEEEEeeCCCC---C---C-CCCCCcEEEEEEC-----CeEEEeecccCCCCCcc-ccEEEEEeeCCC-CcEEEE
Q 044346 12 LLSLRLRIKQGVNLAI---H---D-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEW-NEVFPFSTTYPN-VPIMLS 77 (159)
Q Consensus 12 ~~~L~v~v~~a~~L~~---~---~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w-~e~~~~~~~~~~-~~l~~~ 77 (159)
...|.|+|+.|++|+. . + ....||||.+.+. ...++|+++.++.+|.| +|.|.|.+..++ ..|.|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 3479999999998731 1 1 2347999999875 34568888888899999 999999988776 477999
Q ss_pred EEEccCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecC-----CCcccEEEEEEEEEe
Q 044346 78 VCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLT-----NIECGKLQVQLRYCN 137 (159)
Q Consensus 78 v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~-----~~~~G~l~l~l~~~~ 137 (159)
|+|++..+.++|+|++.+++..|..+ .....|. .-..++|.+++.+.+
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~G------------YR~VpL~~~~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSG------------VRAVRLHDRAGKAYKNTRLLVSFALDP 562 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCC------------eeEEEccCCCCCCCCCeEEEEEEEEcC
Confidence 99999888999999999999998763 1112221 123567888888764
No 113
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=2.7e-11 Score=89.62 Aligned_cols=136 Identities=22% Similarity=0.374 Sum_probs=105.5
Q ss_pred ceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEE-eeCC---CCcEEEEEEEc
Q 044346 12 LLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFS-TTYP---NVPIMLSVCDH 81 (159)
Q Consensus 12 ~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~-~~~~---~~~l~~~v~d~ 81 (159)
...+..++.+|++|.+++ .+..|||+...+. ..+.+|++..++.||.|+|...+. +... ...+.+.+.|.
T Consensus 92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn 171 (362)
T KOG1013|consen 92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDN 171 (362)
T ss_pred hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccC
Confidence 346788999999999999 9999999998886 345788899999999999987776 3322 23677889999
Q ss_pred cCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEe----ec------CCCcccEEEEEEEEEeCCCCCce-EEEEEe
Q 044346 82 DSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDL----KL------TNIECGKLQVQLRYCNLPGSKGF-IMFYEC 150 (159)
Q Consensus 82 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~----~l------~~~~~G~l~l~l~~~~~~~~~~l-~~~~~~ 150 (159)
+.+..++++|+..+++..+...+.-.. ..|| +. ..+++|+|.+++.|. +..+++ +++++|
T Consensus 172 ~~~~~~~sqGq~r~~lkKl~p~q~k~f-------~~cl~~~lp~~rad~~~~E~rg~i~isl~~~--s~~~~l~vt~iRc 242 (362)
T KOG1013|consen 172 DKKTHNESQGQSRVSLKKLKPLQRKSF-------NICLEKSLPSERADRDEDEERGAILISLAYS--STTPGLIVTIIRC 242 (362)
T ss_pred cccccccCcccchhhhhccChhhcchh-------hhhhhccCCcccccccchhhccceeeeeccC--cCCCceEEEEEEe
Confidence 999899999999988888766433211 1121 11 126789999999997 667788 999999
Q ss_pred cccccc
Q 044346 151 SSLCSS 156 (159)
Q Consensus 151 ~~l~~~ 156 (159)
++|++|
T Consensus 243 ~~l~ss 248 (362)
T KOG1013|consen 243 SHLASS 248 (362)
T ss_pred eeeecc
Confidence 999654
No 114
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=99.06 E-value=1.1e-09 Score=89.45 Aligned_cols=91 Identities=21% Similarity=0.341 Sum_probs=77.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCcEEEEEEC-----CeEE-EeecccCCCCCccc-cEEEEEeeCCC-CcEEEEEEEccCC
Q 044346 13 LSLRLRIKQGVNLAIHDHSGSDPCVFVMMA-----KENI-KIRFIGNNVNPEWN-EVFPFSTTYPN-VPIMLSVCDHDSF 84 (159)
Q Consensus 13 ~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~-----~~~~-~t~~~~~~~~P~w~-e~~~~~~~~~~-~~l~~~v~d~~~~ 84 (159)
..|.|.|+.|+.|+....+...||+.+.+. ..++ .|.+..+++||+|+ +.|.|.+.+|+ ..|.|.|++.|.+
T Consensus 1065 ~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmf 1144 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMF 1144 (1267)
T ss_pred eEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccccc
Confidence 678999999999997666677799999876 3344 45566689999999 99999999886 5889999999999
Q ss_pred CCCCccEEEEEeCccchhh
Q 044346 85 TKDDRMKDAKIDIREYMKD 103 (159)
Q Consensus 85 ~~d~~lG~~~i~l~~l~~~ 103 (159)
+...|||++.+|+..+..+
T Consensus 1145 s~~~FiaqA~yPv~~ik~G 1163 (1267)
T KOG1264|consen 1145 SDPNFLAQATYPVKAIKSG 1163 (1267)
T ss_pred CCcceeeeeecchhhhhcc
Confidence 9888999999999987763
No 115
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.04 E-value=5.9e-11 Score=95.59 Aligned_cols=90 Identities=21% Similarity=0.348 Sum_probs=79.2
Q ss_pred eEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-------CeEEEeecccCCCCCccccEEEEEeeCC-----CCcEEEEEE
Q 044346 13 LSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-------KENIKIRFIGNNVNPEWNEVFPFSTTYP-----NVPIMLSVC 79 (159)
Q Consensus 13 ~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-------~~~~~t~~~~~~~~P~w~e~~~~~~~~~-----~~~l~~~v~ 79 (159)
-.|.|.|+.|+++.+.+ +|.+||||++.+. -..++|++..+|+||+|+|+|.|.+... ...+.|+||
T Consensus 947 q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVM 1026 (1103)
T KOG1328|consen 947 QTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVM 1026 (1103)
T ss_pred cchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEee
Confidence 35778889999999999 9999999999988 3467999999999999999999998863 237899999
Q ss_pred EccCCCCCCccEEEEEeCccchh
Q 044346 80 DHDSFTKDDRMKDAKIDIREYMK 102 (159)
Q Consensus 80 d~~~~~~d~~lG~~~i~l~~l~~ 102 (159)
|||-.+.+||-|++.+.|+++-.
T Consensus 1027 DHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1027 DHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred ccceecccccchHHHHhhCCCCC
Confidence 99999999999999999998644
No 116
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.97 E-value=6.2e-09 Score=65.62 Aligned_cols=84 Identities=13% Similarity=0.164 Sum_probs=69.3
Q ss_pred EEEEEEEeeCCCCCC----CCCCCcEEEEEECCe-EEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCc
Q 044346 15 LRLRIKQGVNLAIHD----HSGSDPCVFVMMAKE-NIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDR 89 (159)
Q Consensus 15 L~v~v~~a~~L~~~~----~~~~dpy~~v~~~~~-~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~ 89 (159)
|.|+|..++++.... ++.++||+.+.++.. +.+|+. +.||.|||.|.|.+. ....+.+.+||...- ..-.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd-k~nEiel~VyDk~~~-~~~P 75 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE-KNNEEEVIVYDKGGD-QPVP 75 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec-CCcEEEEEEEeCCCC-eecc
Confidence 578999999998765 567899999999954 777776 478999999999995 688999999998654 4458
Q ss_pred cEEEEEeCccchhh
Q 044346 90 MKDAKIDIREYMKD 103 (159)
Q Consensus 90 lG~~~i~l~~l~~~ 103 (159)
+|..=+.++++..+
T Consensus 76 i~llW~~~sdi~Ee 89 (109)
T cd08689 76 VGLLWLRLSDIAEE 89 (109)
T ss_pred eeeehhhHHHHHHH
Confidence 89888888888764
No 117
>PLN02352 phospholipase D epsilon
Probab=98.87 E-value=1e-07 Score=78.58 Aligned_cols=113 Identities=15% Similarity=0.163 Sum_probs=83.4
Q ss_pred cccceEEEEEEEEeeCCCCC----C--CCCCCcEEEEEECCeEE-EeecccCCCCCccccEEEEEeeCCC-CcEEEEEEE
Q 044346 9 RTSLLSLRLRIKQGVNLAIH----D--HSGSDPCVFVMMAKENI-KIRFIGNNVNPEWNEVFPFSTTYPN-VPIMLSVCD 80 (159)
Q Consensus 9 ~~~~~~L~v~v~~a~~L~~~----~--~~~~dpy~~v~~~~~~~-~t~~~~~~~~P~w~e~~~~~~~~~~-~~l~~~v~d 80 (159)
.-..|.|.++|.+|.-+... . ....+||+++.+++.+. +| .+..||.|+|+|.+++.... ..+.|.|.|
T Consensus 6 ~~lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~ 82 (758)
T PLN02352 6 KFFHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT 82 (758)
T ss_pred cccccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec
Confidence 34578999999999733221 1 12239999999985544 66 55559999999999998776 689999988
Q ss_pred ccCCCCCCccEEEEEeCccchhhcc-cCCCCCceeeeEEeecCC----Ccc-cEEEEEEEEEeC
Q 044346 81 HDSFTKDDRMKDAKIDIREYMKDVK-INLEPRNAVKDLDLKLTN----IEC-GKLQVQLRYCNL 138 (159)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~~~~~~~~~~l~~----~~~-G~l~l~l~~~~~ 138 (159)
.-.+||.+.++.+++..+.. + +.|+++-+ ... .+|+++++|.+.
T Consensus 83 -----~~~~ig~~~~p~~~~~~g~~~~---------~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 132 (758)
T PLN02352 83 -----KCSILGRFHIQAHQIVTEASFI---------NGFFPLIMENGKPNPELKLRFMLWFRPA 132 (758)
T ss_pred -----CCeEEEEEEEEHHHhhCCCccc---------ceEEEcccCCCCCCCCCEEEEEEEEEEh
Confidence 24799999999999887544 3 55666522 223 599999999875
No 118
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.84 E-value=5.3e-10 Score=90.25 Aligned_cols=115 Identities=23% Similarity=0.304 Sum_probs=87.6
Q ss_pred ceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-------------------------------eEEEeecccCCCCCcc
Q 044346 12 LLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAK-------------------------------ENIKIRFIGNNVNPEW 59 (159)
Q Consensus 12 ~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~-------------------------------~~~~t~~~~~~~~P~w 59 (159)
...+.|.+..|++|-.++ +|.+|||+...+-. -.+-|++..+|+||.|
T Consensus 113 ~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW 192 (1103)
T KOG1328|consen 113 SVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKW 192 (1103)
T ss_pred cHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcch
Confidence 445667778899999999 99999999976530 0234667778999999
Q ss_pred ccEEEEEeeCC-CCcEEEEEEEccCC---------------------------------CC---CCccEEEEEeCccchh
Q 044346 60 NEVFPFSTTYP-NVPIMLSVCDHDSF---------------------------------TK---DDRMKDAKIDIREYMK 102 (159)
Q Consensus 60 ~e~~~~~~~~~-~~~l~~~v~d~~~~---------------------------------~~---d~~lG~~~i~l~~l~~ 102 (159)
+|.|.|.+..- ...+.+-|||||.- +. |||+|.+.++|.++-.
T Consensus 193 ~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~ 272 (1103)
T KOG1328|consen 193 SEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPP 272 (1103)
T ss_pred hhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCc
Confidence 99999998874 57899999999752 33 7899999999998533
Q ss_pred hcccCCCCCceeeeEEeecC-----CCcccEEEEEEEEE
Q 044346 103 DVKINLEPRNAVKDLDLKLT-----NIECGKLQVQLRYC 136 (159)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~-----~~~~G~l~l~l~~~ 136 (159)
. |- +.|+.++ ....|.+++++-.+
T Consensus 273 ~-------Gl---d~WFkLepRS~~S~VqG~~~LklwLs 301 (1103)
T KOG1328|consen 273 D-------GL---DQWFKLEPRSDKSKVQGQVKLKLWLS 301 (1103)
T ss_pred c-------hH---HHHhccCcccccccccceEEEEEEEe
Confidence 1 11 5676663 36789999998654
No 119
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.82 E-value=3.8e-09 Score=87.67 Aligned_cols=91 Identities=22% Similarity=0.474 Sum_probs=80.9
Q ss_pred ccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEE--EeecccCCCCCccccEEEEEeeCC-CCcEEEEEEEccCCC
Q 044346 10 TSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENI--KIRFIGNNVNPEWNEVFPFSTTYP-NVPIMLSVCDHDSFT 85 (159)
Q Consensus 10 ~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~--~t~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~ 85 (159)
.-...++|++++|.+|.+.| +|.+|||+.+.+++... +...+.+++||+|++.|.+.+.-+ +..++++|||+|.++
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~ 689 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA 689 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc
Confidence 34567789999999999999 99999999999997664 666788999999999999998776 678999999999999
Q ss_pred CCCccEEEEEeCccc
Q 044346 86 KDDRMKDAKIDIREY 100 (159)
Q Consensus 86 ~d~~lG~~~i~l~~l 100 (159)
+|+.+|+..++|+.-
T Consensus 690 ~d~~iget~iDLEnR 704 (1105)
T KOG1326|consen 690 QDEKIGETTIDLENR 704 (1105)
T ss_pred ccchhhceehhhhhc
Confidence 999999999999864
No 120
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.64 E-value=6.8e-08 Score=77.98 Aligned_cols=107 Identities=16% Similarity=0.204 Sum_probs=77.2
Q ss_pred EeeCCCCCCCCCCCcEEEEEECCe----EEEeecccCCCCCccccEEEEEeeCC----------------CCcEEEEEEE
Q 044346 21 QGVNLAIHDHSGSDPCVFVMMAKE----NIKIRFIGNNVNPEWNEVFPFSTTYP----------------NVPIMLSVCD 80 (159)
Q Consensus 21 ~a~~L~~~~~~~~dpy~~v~~~~~----~~~t~~~~~~~~P~w~e~~~~~~~~~----------------~~~l~~~v~d 80 (159)
.++.+.+..++.+|||+++...+. ..+|++..+|.+|.|+|.|.|.+... -..+.+.+|+
T Consensus 139 ~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~ 218 (800)
T KOG2059|consen 139 KTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWN 218 (800)
T ss_pred hhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeecc
Confidence 344444555567999999988733 35899999999999999999987654 1267889998
Q ss_pred -ccCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeec----------CCCcccEEEEEEEEE
Q 044346 81 -HDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKL----------TNIECGKLQVQLRYC 136 (159)
Q Consensus 81 -~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l----------~~~~~G~l~l~l~~~ 136 (159)
.+....++|+|++.+++..+.....- ..|+.+ .+...|.+++.++|.
T Consensus 219 ~~~~~~~~~FlGevrv~v~~~~~~s~p---------~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 219 DLNLVINDVFLGEVRVPVDVLRQKSSP---------AAWYYLQPRPNGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred chhhhhhhhhceeEEeehhhhhhccCc---------cceEEEecCCCcccCCCCCCccceeeeEEee
Confidence 55566689999999999987631111 234433 124568899999885
No 121
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.62 E-value=4.6e-08 Score=82.75 Aligned_cols=96 Identities=15% Similarity=0.185 Sum_probs=80.7
Q ss_pred cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeC----CCCcEEEEEEE
Q 044346 11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTY----PNVPIMLSVCD 80 (159)
Q Consensus 11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~----~~~~l~~~v~d 80 (159)
-.+.|+|.|..+++|+... +..+||||+.++. ..+.+|+++++|.+|.|||.+.+.-.+ ..+.|+++||.
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 3678999999999997666 8899999999997 346699999999999999998877322 14789999999
Q ss_pred ccCCCCCCccEEEEEeCccchhhccc
Q 044346 81 HDSFTKDDRMKDAKIDIREYMKDVKI 106 (159)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~l~~~~~~ 106 (159)
.+.+..+.++|.+.++|.++...++.
T Consensus 1602 ~~~~~en~~lg~v~i~L~~~~l~kE~ 1627 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLLKES 1627 (1639)
T ss_pred ccceeeeeeeeeeecchhhcchhhhh
Confidence 99998899999999999987665444
No 122
>PLN02964 phosphatidylserine decarboxylase
Probab=98.24 E-value=3.4e-06 Score=69.09 Aligned_cols=90 Identities=11% Similarity=0.132 Sum_probs=72.7
Q ss_pred CcccceEEEEEEEEeeCCCCCCCCCCCcEE-EEEECCeEEEeecccCCCCCccccEEEEEeeCCC-CcEEEEEEEccCCC
Q 044346 8 RRTSLLSLRLRIKQGVNLAIHDHSGSDPCV-FVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPN-VPIMLSVCDHDSFT 85 (159)
Q Consensus 8 ~~~~~~~L~v~v~~a~~L~~~~~~~~dpy~-~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~~-~~l~~~v~d~~~~~ 85 (159)
.+...|...+++.+|+ ++ ..|+|. .+.++.+.++|....+|.+|+||+...|.+...+ ....|.|||.+.++
T Consensus 49 ~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 122 (644)
T PLN02964 49 AEDFSGIALLTLVGAE----MK--FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLS 122 (644)
T ss_pred cccccCeEEEEeehhh----hc--cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCC
Confidence 3455778888888876 22 357755 4677899999999999999999999888887653 34599999999999
Q ss_pred CCCccEEEEEeCccchhh
Q 044346 86 KDDRMKDAKIDIREYMKD 103 (159)
Q Consensus 86 ~d~~lG~~~i~l~~l~~~ 103 (159)
+++.+|.+.++|.++...
T Consensus 123 ~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 123 KNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred HHHhhhheeecHhhccHH
Confidence 999999999988776553
No 123
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=98.19 E-value=2e-06 Score=66.00 Aligned_cols=118 Identities=20% Similarity=0.269 Sum_probs=86.8
Q ss_pred EEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC---C---------CcEEE
Q 044346 15 LRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP---N---------VPIML 76 (159)
Q Consensus 15 L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~---------~~l~~ 76 (159)
|.+.|+++.+++... .-..|-|+.+.+. ..+.+|.+++.|.+|.|+|.|-+.+... + ..++|
T Consensus 369 lel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kf 448 (523)
T KOG3837|consen 369 LELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKF 448 (523)
T ss_pred hHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeE
Confidence 556667777665544 2234567776654 4566888999999999999999998761 1 27999
Q ss_pred EEEEccCCC-CCCccEEEEEeCccchhhcccCCCCCceeeeEEeec---CCCcccEEEEEEEEEeCCCC
Q 044346 77 SVCDHDSFT-KDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKL---TNIECGKLQVQLRYCNLPGS 141 (159)
Q Consensus 77 ~v~d~~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l---~~~~~G~l~l~l~~~~~~~~ 141 (159)
+||+.+.|- +|.++|.+.+.|..|....++.. .+++ +....|+|.++++...+.+.
T Consensus 449 eifhkggf~rSdkl~gt~nikle~Len~cei~e---------~~~l~DGRK~vGGkLevKvRiR~Pi~~ 508 (523)
T KOG3837|consen 449 EIFHKGGFNRSDKLTGTGNIKLEILENMCEICE---------YLPLKDGRKAVGGKLEVKVRIRQPIGD 508 (523)
T ss_pred EEeeccccccccceeceeeeeehhhhcccchhh---------ceeccccccccCCeeEEEEEEecccch
Confidence 999998864 57799999999999988766632 2233 34678999999998766543
No 124
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=4.8e-06 Score=62.25 Aligned_cols=86 Identities=26% Similarity=0.275 Sum_probs=71.9
Q ss_pred cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCCC---CcEEEEEEEc
Q 044346 11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYPN---VPIMLSVCDH 81 (159)
Q Consensus 11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~~---~~l~~~v~d~ 81 (159)
....+.|++.++..|..++ ++-+|||+...+. .-+.+|...+++.+|.|+++|.+.+.+.+ ..+.+.+||.
T Consensus 231 ~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~ 310 (362)
T KOG1013|consen 231 TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDY 310 (362)
T ss_pred CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeeccc
Confidence 3556889999999999999 9999999999876 34568888889999999999999998753 4788999999
Q ss_pred cCCCCCCccEEEEEe
Q 044346 82 DSFTKDDRMKDAKID 96 (159)
Q Consensus 82 ~~~~~d~~lG~~~i~ 96 (159)
+.....+++|-....
T Consensus 311 ~~G~s~d~~GG~~~g 325 (362)
T KOG1013|consen 311 DIGKSNDSIGGSMLG 325 (362)
T ss_pred CCCcCccCCCccccc
Confidence 988777888865544
No 125
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.98 E-value=3.2e-05 Score=50.60 Aligned_cols=89 Identities=21% Similarity=0.368 Sum_probs=65.9
Q ss_pred EEEEEEEeeCCCCC-----------C---CCCCCcEEEEEEC----CeEEEeecccCCCCCccccEEEEEeeC-----C-
Q 044346 15 LRLRIKQGVNLAIH-----------D---HSGSDPCVFVMMA----KENIKIRFIGNNVNPEWNEVFPFSTTY-----P- 70 (159)
Q Consensus 15 L~v~v~~a~~L~~~-----------~---~~~~dpy~~v~~~----~~~~~t~~~~~~~~P~w~e~~~~~~~~-----~- 70 (159)
|.|.|.+|.+|+.. . .-.-++|+++.+. .+..+|+++.++..|.|+-+++|.+.- .
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 35667777777521 1 1234789999865 667799999999999999999998762 1
Q ss_pred ----------CCcEEEEEEEccCCC----------CCCccEEEEEeCccchhh
Q 044346 71 ----------NVPIMLSVCDHDSFT----------KDDRMKDAKIDIREYMKD 103 (159)
Q Consensus 71 ----------~~~l~~~v~d~~~~~----------~d~~lG~~~i~l~~l~~~ 103 (159)
...+.|++|+..+.+ +|-.+|.+.+|+.+|+..
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~ 133 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTK 133 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhc
Confidence 127889999876433 344899999999998864
No 126
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.95 E-value=1.9e-05 Score=48.25 Aligned_cols=84 Identities=10% Similarity=0.183 Sum_probs=63.2
Q ss_pred EEEEEeeCCCCCC--CCCCCcEEEEE--EC-CeEEEeecccCCCCCccccEEEEEeeC---CCCcEEEEEEEccCCCCCC
Q 044346 17 LRIKQGVNLAIHD--HSGSDPCVFVM--MA-KENIKIRFIGNNVNPEWNEVFPFSTTY---PNVPIMLSVCDHDSFTKDD 88 (159)
Q Consensus 17 v~v~~a~~L~~~~--~~~~dpy~~v~--~~-~~~~~t~~~~~~~~P~w~e~~~~~~~~---~~~~l~~~v~d~~~~~~d~ 88 (159)
|+++.++++.... ...+..|++-- +. ...++|+......||+|.|+|.|.+.. +...|.|.|+. ...+.+
T Consensus 3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RKe 80 (103)
T cd08684 3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRKR 80 (103)
T ss_pred EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCccc
Confidence 6788899987665 33444566533 33 446688888899999999999998664 35688899998 344678
Q ss_pred ccEEEEEeCccchh
Q 044346 89 RMKDAKIDIREYMK 102 (159)
Q Consensus 89 ~lG~~~i~l~~l~~ 102 (159)
.||.+.+.++++-.
T Consensus 81 ~iG~~sL~l~s~ge 94 (103)
T cd08684 81 TIGECSLSLRTLST 94 (103)
T ss_pred eeeEEEeecccCCH
Confidence 99999999998654
No 127
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=7.3e-05 Score=60.83 Aligned_cols=93 Identities=18% Similarity=0.197 Sum_probs=74.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCcEEEEEEC-------CeEEEeecccCCCCCccccEEEEEeeCCC----CcEEEEEEEcc
Q 044346 14 SLRLRIKQGVNLAIHDHSGSDPCVFVMMA-------KENIKIRFIGNNVNPEWNEVFPFSTTYPN----VPIMLSVCDHD 82 (159)
Q Consensus 14 ~L~v~v~~a~~L~~~~~~~~dpy~~v~~~-------~~~~~t~~~~~~~~P~w~e~~~~~~~~~~----~~l~~~v~d~~ 82 (159)
.++|.|+.|.+|....+|...||+.+.+- ++++.|+...++-.|.|||+|+|.+.+.. ..|.|.|-|+=
T Consensus 1126 kvtvkvvaandlkwqtsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYC 1205 (1283)
T KOG1011|consen 1126 KVTVKVVAANDLKWQTSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDYC 1205 (1283)
T ss_pred eEEEEEEecccccchhccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhhe
Confidence 57788899999988777888899999875 45678888888889999999999987642 36778887765
Q ss_pred CCCCCCccEEEEEeCccchhhccc
Q 044346 83 SFTKDDRMKDAKIDIREYMKDVKI 106 (159)
Q Consensus 83 ~~~~d~~lG~~~i~l~~l~~~~~~ 106 (159)
=...|+.+|.+.++|.++...+..
T Consensus 1206 FAReDRvvGl~VlqL~~va~kGS~ 1229 (1283)
T KOG1011|consen 1206 FAREDRVVGLAVLQLRSVADKGSC 1229 (1283)
T ss_pred eecccceeeeeeeehhhHhhcCce
Confidence 455677999999999998775444
No 128
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=6.3e-06 Score=62.55 Aligned_cols=96 Identities=18% Similarity=0.173 Sum_probs=80.0
Q ss_pred CcccceEEEEEEEEeeCCCCCC--CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEE
Q 044346 8 RRTSLLSLRLRIKQGVNLAIHD--HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCD 80 (159)
Q Consensus 8 ~~~~~~~L~v~v~~a~~L~~~~--~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d 80 (159)
.....|.+.|.|++|++|..+. ...+.||++|++. ..+.+|+...+|.+|.+-..+.|.-.++...|.+.+|-
T Consensus 264 ~~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~g 343 (405)
T KOG2060|consen 264 LMDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWG 343 (405)
T ss_pred hhcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEec
Confidence 3456789999999999998766 5588999999986 34668888899999999998899888888999999994
Q ss_pred -ccCCCCCCccEEEEEeCccchhh
Q 044346 81 -HDSFTKDDRMKDAKIDIREYMKD 103 (159)
Q Consensus 81 -~~~~~~d~~lG~~~i~l~~l~~~ 103 (159)
....-++.|+|.+++-+++|...
T Consensus 344 dygRmd~k~fmg~aqi~l~eL~ls 367 (405)
T KOG2060|consen 344 DYGRMDHKSFMGVAQIMLDELNLS 367 (405)
T ss_pred cccccchHHHhhHHHHHhhhhccc
Confidence 66666778999999999997653
No 129
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=97.83 E-value=0.0011 Score=45.13 Aligned_cols=124 Identities=15% Similarity=0.180 Sum_probs=83.7
Q ss_pred cceEEEEEEEEeeCCCCCC-C--CCCCc--EEEEEECCeEEEeecccCCCCCccccEEEEEeeCCC--------------
Q 044346 11 SLLSLRLRIKQGVNLAIHD-H--SGSDP--CVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPN-------------- 71 (159)
Q Consensus 11 ~~~~L~v~v~~a~~L~~~~-~--~~~dp--y~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~~-------------- 71 (159)
....|.+.|..++-..... . +..+. .+-+.+.+++++|+.+..+.+|.|+|.|.|++....
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~ 86 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSIS 86 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCC
Confidence 3456788888775333222 1 23333 333445599999999999999999999999976532
Q ss_pred CcEEEEEEEccCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEe-ecCC---CcccEEEEEEEEEeCC
Q 044346 72 VPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDL-KLTN---IECGKLQVQLRYCNLP 139 (159)
Q Consensus 72 ~~l~~~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~-~l~~---~~~G~l~l~l~~~~~~ 139 (159)
+.+.+-+..-+..+...++|.-.++...+...+..... ....+ -..+ .+.|.|.+++...|..
T Consensus 87 ~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~-----~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 87 DPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTS-----FTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred CceEEEEEEecCCCceEeeeeceehHHHHhccCCCccc-----eeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 37888888888776668999999999887765443110 01111 1122 3789999999998654
No 130
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.64 E-value=0.00011 Score=58.56 Aligned_cols=82 Identities=27% Similarity=0.375 Sum_probs=65.9
Q ss_pred EEeeCCCCCC-CCCCCcEEEEEEC------CeEEEeecccCCCCCccccEEEEE-----eeCCCCcEEEEEEEccCCCCC
Q 044346 20 KQGVNLAIHD-HSGSDPCVFVMMA------KENIKIRFIGNNVNPEWNEVFPFS-----TTYPNVPIMLSVCDHDSFTKD 87 (159)
Q Consensus 20 ~~a~~L~~~~-~~~~dpy~~v~~~------~~~~~t~~~~~~~~P~w~e~~~~~-----~~~~~~~l~~~v~d~~~~~~d 87 (159)
++|.+|..++ ++.+|||..+.-- ...++|.++.++++|.|.+ |.+. -...+..+.+.+||++..+++
T Consensus 143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~ 221 (529)
T KOG1327|consen 143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKH 221 (529)
T ss_pred eeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCc
Confidence 4578888999 9999999987643 2356899999999999975 3333 222467899999999999999
Q ss_pred CccEEEEEeCccchh
Q 044346 88 DRMKDAKIDIREYMK 102 (159)
Q Consensus 88 ~~lG~~~i~l~~l~~ 102 (159)
+++|.+..++.++..
T Consensus 222 ~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 222 DLIGKFQTTLSELQE 236 (529)
T ss_pred CceeEecccHHHhcc
Confidence 999999999998863
No 131
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.57 E-value=1.4e-05 Score=67.21 Aligned_cols=84 Identities=21% Similarity=0.233 Sum_probs=69.6
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEE---eeCC-------CCcEEEEEEEcc
Q 044346 14 SLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFS---TTYP-------NVPIMLSVCDHD 82 (159)
Q Consensus 14 ~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~---~~~~-------~~~l~~~v~d~~ 82 (159)
.+++++.+|+.|...+ .+.+|||+.+.+..+.+.|-++..|+||.|+....|. +... -..+.|++||.+
T Consensus 207 ~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~d 286 (1105)
T KOG1326|consen 207 PLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLD 286 (1105)
T ss_pred hhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhh
Confidence 4566677888888888 8899999999999999999999999999999998886 2211 126789999999
Q ss_pred CCCCCCccEEEEEeC
Q 044346 83 SFTKDDRMKDAKIDI 97 (159)
Q Consensus 83 ~~~~d~~lG~~~i~l 97 (159)
..+.++|+|+.....
T Consensus 287 r~g~~ef~gr~~~~p 301 (1105)
T KOG1326|consen 287 RSGINEFKGRKKQRP 301 (1105)
T ss_pred hhchHHhhcccccce
Confidence 999999999876653
No 132
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.17 E-value=0.015 Score=44.62 Aligned_cols=115 Identities=18% Similarity=0.191 Sum_probs=84.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeC--------CCCcEEEEEEEcc-CCC
Q 044346 15 LRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTY--------PNVPIMLSVCDHD-SFT 85 (159)
Q Consensus 15 L~v~v~~a~~L~~~~~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~--------~~~~l~~~v~d~~-~~~ 85 (159)
+.+.|++|++.+... .....+...+++....|..+..+..|.|+..+.+++.. ....+++++|.-+ ..+
T Consensus 2 ivl~i~egr~F~~~~--~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~ 79 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP--RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTG 79 (340)
T ss_pred EEEEEecccCCCCCC--CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCC
Confidence 578899999988753 34457778888999999999999999999999998764 2468999999877 555
Q ss_pred CCCccEEEEEeCccc---hhhcccCCCCCceeeeEEeecCC------CcccEEEEEEEEEeC
Q 044346 86 KDDRMKDAKIDIREY---MKDVKINLEPRNAVKDLDLKLTN------IECGKLQVQLRYCNL 138 (159)
Q Consensus 86 ~d~~lG~~~i~l~~l---~~~~~~~~~~~~~~~~~~~~l~~------~~~G~l~l~l~~~~~ 138 (159)
..+.+|.+-++|... ... ....+..|+++-+ ..+.+|.+.+...+.
T Consensus 80 ~re~iGyv~LdLRsa~~~~~~-------~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~ 134 (340)
T PF12416_consen 80 KRESIGYVVLDLRSAVVPQEK-------NQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDD 134 (340)
T ss_pred cceeccEEEEEcccccccccc-------ccccCCCeeEccccccccccCCccEEEEEEEecc
Confidence 678999999999997 221 0112256776622 245678888776543
No 133
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=97.06 E-value=0.015 Score=35.88 Aligned_cols=85 Identities=12% Similarity=0.173 Sum_probs=58.9
Q ss_pred CCCCcEEEEEECCeEE-EeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCccEEEEEeCccchhhcccCCC
Q 044346 31 SGSDPCVFVMMAKENI-KIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLE 109 (159)
Q Consensus 31 ~~~dpy~~v~~~~~~~-~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~ 109 (159)
|..+..+.+.++.... .|.-.. ..+..|++.|.+.+. .++.|.|+||-.|- ..+.|...+.|++...+.
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~Ld-RsRELEI~VywrD~---RslCav~~lrLEd~~~~~----- 76 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELE-RSRELEIAVYWRDW---RSLCAVKFLKLEDERHEV----- 76 (98)
T ss_pred cccceEEEEEEcCeEEeeccccc-cccccccceeEEEee-cccEEEEEEEEecc---hhhhhheeeEhhhhcccc-----
Confidence 4567778887775433 444333 358899999999998 68899999987763 257888888898833211
Q ss_pred CCceeeeEEeecCCCcccEEEEEEEE
Q 044346 110 PRNAVKDLDLKLTNIECGKLQVQLRY 135 (159)
Q Consensus 110 ~~~~~~~~~~~l~~~~~G~l~l~l~~ 135 (159)
.+ .-.+.|.+...++|
T Consensus 77 --------~~--~lepqg~l~~ev~f 92 (98)
T cd08687 77 --------QL--DMEPQLCLVAELTF 92 (98)
T ss_pred --------ee--ccccccEEEEEEEe
Confidence 21 22678888888776
No 134
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.84 E-value=0.026 Score=38.65 Aligned_cols=87 Identities=21% Similarity=0.342 Sum_probs=59.7
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCcEEEEEEC--Ce----EEEeecccCCCCCccccEEEEEeeCC----CCcEEEEEEEc
Q 044346 12 LLSLRLRIKQGVNLAIHDHSGSDPCVFVMMA--KE----NIKIRFIGNNVNPEWNEVFPFSTTYP----NVPIMLSVCDH 81 (159)
Q Consensus 12 ~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~--~~----~~~t~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~ 81 (159)
...++|++..+.++.... .++.|+.+.+- .+ ...|+.+.. .++.|||.+.|.+.-. +..|.|+||+.
T Consensus 7 ~~~~~v~i~~~~~~~~~~--~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 7 NSNLRIKILCATYVNVND--IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCCeEEEEEeeccCCCCC--cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 456889999999887643 45778877543 22 223443443 5799999999987643 45899999986
Q ss_pred cCCC----CCCccEEEEEeCccch
Q 044346 82 DSFT----KDDRMKDAKIDIREYM 101 (159)
Q Consensus 82 ~~~~----~d~~lG~~~i~l~~l~ 101 (159)
.... ....+|.+.++|-+..
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~~ 107 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDYT 107 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECCC
Confidence 5421 2246999999988744
No 135
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=96.73 E-value=0.033 Score=38.72 Aligned_cols=89 Identities=13% Similarity=0.211 Sum_probs=60.1
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCcEEEEEE--CCe----EEEeecccCCCCCccccEEEEEeeCC----CCcEEEEEEEc
Q 044346 12 LLSLRLRIKQGVNLAIHDHSGSDPCVFVMM--AKE----NIKIRFIGNNVNPEWNEVFPFSTTYP----NVPIMLSVCDH 81 (159)
Q Consensus 12 ~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~--~~~----~~~t~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~ 81 (159)
...++|++..+.++...+ ...+.|+.+.+ +.+ ...|+......++.|+|.+.|.+.-. +..|.|+||+.
T Consensus 7 ~~~f~i~i~~~~~~~~~~-~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 7 EEKFSITLHKISNLNAAE-RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCCEEEEEEEeccCccCC-CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 446889999999887622 23556666543 322 33555555456799999999986542 46899999986
Q ss_pred cCCC----------------CCCccEEEEEeCccch
Q 044346 82 DSFT----------------KDDRMKDAKIDIREYM 101 (159)
Q Consensus 82 ~~~~----------------~d~~lG~~~i~l~~l~ 101 (159)
.... .+..||.+.++|-+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~ 121 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYK 121 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEccc
Confidence 5322 2358999999887744
No 136
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=96.69 E-value=0.0097 Score=47.87 Aligned_cols=98 Identities=16% Similarity=0.230 Sum_probs=67.7
Q ss_pred EEEeecccCCCCCccccEEEEEeeCC-CCcEEEEEEEccC----CCCCCccEEEEEeCccchhhcccCCCCCceeeeEEe
Q 044346 45 NIKIRFIGNNVNPEWNEVFPFSTTYP-NVPIMLSVCDHDS----FTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDL 119 (159)
Q Consensus 45 ~~~t~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~----~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~ 119 (159)
..+|.++.+.+||.|.+.|.+..... .+.+.|.+++-+. ....+|+|++.+.+.++........ .+
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~---------~l 112 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTG---------PL 112 (529)
T ss_pred ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhh---------hh
Confidence 44888999999999999988885554 5789999998554 3456799999999999887544421 11
Q ss_pred ec---CCCcccEEEEEEEEEeCCCCCce-EEEEEeccc
Q 044346 120 KL---TNIECGKLQVQLRYCNLPGSKGF-IMFYECSSL 153 (159)
Q Consensus 120 ~l---~~~~~G~l~l~l~~~~~~~~~~l-~~~~~~~~l 153 (159)
.+ .+...|.|.+...-. ...+.. ....+|.+|
T Consensus 113 ~~~~~~~~~~g~iti~aee~--~~~~~~~~~~~~~~~l 148 (529)
T KOG1327|consen 113 LLKPGKNAGSGTITISAEED--ESDNDVVQFSFRAKNL 148 (529)
T ss_pred hcccCccCCcccEEEEeecc--cccCceeeeeeeeeec
Confidence 11 234566666666432 334444 666777777
No 137
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=96.64 E-value=0.013 Score=40.21 Aligned_cols=70 Identities=14% Similarity=0.235 Sum_probs=51.1
Q ss_pred CCCCcEEEEEEC--Ce----EEEeecccCCCCCccccEEEEEeeCC----CCcEEEEEEEccCCCCCCccEEEEEeCccc
Q 044346 31 SGSDPCVFVMMA--KE----NIKIRFIGNNVNPEWNEVFPFSTTYP----NVPIMLSVCDHDSFTKDDRMKDAKIDIREY 100 (159)
Q Consensus 31 ~~~dpy~~v~~~--~~----~~~t~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~~~~~d~~lG~~~i~l~~l 100 (159)
..++.|+.+.+- .. ...|+...-+..+.|||.+.|++... +..|.|+||+....+....+|.+.++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 356777777553 22 33555555566789999999987653 458999999987655667999999998874
No 138
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=96.57 E-value=0.022 Score=38.76 Aligned_cols=90 Identities=18% Similarity=0.232 Sum_probs=59.2
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCcEEEEEEC--Ce----EEEeecccCCCCCccccEEEEEeeCC----CCcEEEEEEEc
Q 044346 12 LLSLRLRIKQGVNLAIHDHSGSDPCVFVMMA--KE----NIKIRFIGNNVNPEWNEVFPFSTTYP----NVPIMLSVCDH 81 (159)
Q Consensus 12 ~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~--~~----~~~t~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~ 81 (159)
...++|++....++........+.|+.+.+- .+ ...|.......++.|||.+.|.+... +..|.|+||+.
T Consensus 7 ~~~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 7 NFNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCCeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 3457788877777765233345566666543 22 22333333346799999999986542 56899999997
Q ss_pred cCCC--CCCccEEEEEeCccch
Q 044346 82 DSFT--KDDRMKDAKIDIREYM 101 (159)
Q Consensus 82 ~~~~--~d~~lG~~~i~l~~l~ 101 (159)
...+ .+..+|.+.++|=+..
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~~ 108 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDYK 108 (156)
T ss_pred ecCCCCcceEEEEEeEEeEccc
Confidence 6543 4579999999988743
No 139
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.49 E-value=0.0066 Score=51.34 Aligned_cols=84 Identities=18% Similarity=0.297 Sum_probs=64.4
Q ss_pred ceEEEEEEEEeeCCCCCCCCCCCcEEEEEEC-------CeEEEeeccc-CCCCCccccE-EEEE-eeCCC-CcEEEEEEE
Q 044346 12 LLSLRLRIKQGVNLAIHDHSGSDPCVFVMMA-------KENIKIRFIG-NNVNPEWNEV-FPFS-TTYPN-VPIMLSVCD 80 (159)
Q Consensus 12 ~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~-------~~~~~t~~~~-~~~~P~w~e~-~~~~-~~~~~-~~l~~~v~d 80 (159)
.+.+.|+|++|+-|..+..| .||.|.+- ...++|+++. ++.||+|+|+ |.|. +--++ ..|.|.||+
T Consensus 702 A~t~sV~VISgqFLSdrkvg---tyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye 778 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRKVG---TYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE 778 (1189)
T ss_pred EeeEEEEEEeeeeccccccC---ceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence 45788999999999887733 68888764 3566788776 6999999964 6666 44344 589999999
Q ss_pred ccCCCCCCccEEEEEeCccchh
Q 044346 81 HDSFTKDDRMKDAKIDIREYMK 102 (159)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~l~~ 102 (159)
.+. .++|+--++++.|..
T Consensus 779 Egg----K~ig~RIlpvd~l~~ 796 (1189)
T KOG1265|consen 779 EGG----KFIGQRILPVDGLNA 796 (1189)
T ss_pred cCC----ceeeeeccchhcccC
Confidence 774 599999999988665
No 140
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=96.47 E-value=0.057 Score=37.44 Aligned_cols=105 Identities=10% Similarity=0.030 Sum_probs=68.4
Q ss_pred cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC--Ce----EEEeeccc----CCCCCccccEEEEEeeCC----CCcEE
Q 044346 11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA--KE----NIKIRFIG----NNVNPEWNEVFPFSTTYP----NVPIM 75 (159)
Q Consensus 11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~--~~----~~~t~~~~----~~~~P~w~e~~~~~~~~~----~~~l~ 75 (159)
....+.|+|..+.+++... ....+-|+.+.+- .+ ...|+... -...+.|||.+.|.+.-. +..|.
T Consensus 6 v~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~ 85 (171)
T cd04012 6 VTDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV 85 (171)
T ss_pred ccccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence 3456889999999998876 5567788887553 22 22333211 133577999998886542 56899
Q ss_pred EEEEEccCCC---------CCCccEEEEEeCccchhhcccCCCCCceeeeEEe
Q 044346 76 LSVCDHDSFT---------KDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDL 119 (159)
Q Consensus 76 ~~v~d~~~~~---------~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~ 119 (159)
|++|+....+ .+..+|-+.++|=+... .+..|.....+|.
T Consensus 86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~----~L~~G~~~L~lW~ 134 (171)
T cd04012 86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRG----VLRQGSLLLGLWP 134 (171)
T ss_pred EEEEEEecCCccccccccccceEEEEEeEeeEcchh----hhccCCEEEEecc
Confidence 9999866543 34689999999887443 2333544445554
No 141
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=96.18 E-value=0.014 Score=43.95 Aligned_cols=119 Identities=12% Similarity=0.036 Sum_probs=73.3
Q ss_pred cccceEEEEEEEEeeCCCCCC---CCCCCcEEEEEEC-CeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCC
Q 044346 9 RTSLLSLRLRIKQGVNLAIHD---HSGSDPCVFVMMA-KENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSF 84 (159)
Q Consensus 9 ~~~~~~L~v~v~~a~~L~~~~---~~~~dpy~~v~~~-~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~ 84 (159)
....|.|.+++..+++|.... +-..+.||.+... ..+-+|.+......-.|.|.|...+. ....+.+-||.|++-
T Consensus 47 ~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv-~~~vl~~lvySW~pq 125 (442)
T KOG1452|consen 47 VSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVV-NIEVLHYLVYSWPPQ 125 (442)
T ss_pred ecccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecc-cceeeeEEEeecCch
Confidence 345788999999999997543 4456789988776 33445555555666689999998877 356778888888876
Q ss_pred CCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCCCcccEEEEEEEEEeC
Q 044346 85 TKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRYCNL 138 (159)
Q Consensus 85 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~~~~ 138 (159)
.++++.=...+.+..+.. .++ +..+-+.-+++|.+.+.+.+-++
T Consensus 126 ~RHKLC~~g~l~~~~v~r-----qsp-----d~~~Al~lePrgq~~~r~~~~Dp 169 (442)
T KOG1452|consen 126 RRHKLCHLGLLEAFVVDR-----QSP-----DRVVALYLEPRGQPPLRLPLADP 169 (442)
T ss_pred hhccccccchhhhhhhhh-----cCC-----cceeeeecccCCCCceecccCCh
Confidence 665543222222222111 111 11111223678888888776553
No 142
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=95.84 E-value=0.3 Score=32.45 Aligned_cols=121 Identities=20% Similarity=0.246 Sum_probs=75.5
Q ss_pred ccceEEEEEEEEeeCCCCCCCCCCCcEEEEEECCe---EEEeeccc-CCCCCccccEEEEEeeC---C------CCcEEE
Q 044346 10 TSLLSLRLRIKQGVNLAIHDHSGSDPCVFVMMAKE---NIKIRFIG-NNVNPEWNEVFPFSTTY---P------NVPIML 76 (159)
Q Consensus 10 ~~~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~~~---~~~t~~~~-~~~~P~w~e~~~~~~~~---~------~~~l~~ 76 (159)
...-.+.+.+.+..+++. .....|+....+.. ...|.... ....-.|++.|.+.++- . ...+.|
T Consensus 4 ~~kf~~~l~i~~l~~~p~---~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 4 AVKFQFDLTIHELENLPS---SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred eeeEEEEEEEEEeECcCC---CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 345567888889888877 22334555555533 23444333 35567999999887543 1 126889
Q ss_pred EEEEccCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecC--CCcccEEEEEEEEEeCCC
Q 044346 77 SVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLT--NIECGKLQVQLRYCNLPG 140 (159)
Q Consensus 77 ~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~--~~~~G~l~l~l~~~~~~~ 140 (159)
.|+....-++...+|.+.++|.++..... ... ...+.+. ......|.+++++....+
T Consensus 81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~-----~~~--~~~~~l~~~~~~~a~L~isi~~~~~~~ 139 (143)
T PF10358_consen 81 SVFEVDGSGKKKVLGKVSINLAEYANEDE-----EPI--TVRLLLKKCKKSNATLSISISLSELRE 139 (143)
T ss_pred EEEEecCCCccceEEEEEEEHHHhhCcCC-----CcE--EEEEeCccCCCCCcEEEEEEEEEECcc
Confidence 99887433333689999999999776321 011 2333343 356788999998876543
No 143
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=95.34 E-value=0.41 Score=33.49 Aligned_cols=88 Identities=9% Similarity=0.032 Sum_probs=53.4
Q ss_pred eEEEEEEEEeeCCCCCC-CCCCCcEEEEEE--CCe---EEEeecccCCCCCccccEEEEEeeCC----CCcEEEEEEEcc
Q 044346 13 LSLRLRIKQGVNLAIHD-HSGSDPCVFVMM--AKE---NIKIRFIGNNVNPEWNEVFPFSTTYP----NVPIMLSVCDHD 82 (159)
Q Consensus 13 ~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~--~~~---~~~t~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~ 82 (159)
..++|+|..+.. +... ......|+.+.+ +.. ...|....-+.++.|||.+.|.+... ...|.|+||+..
T Consensus 10 ~~friki~~~~~-~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 10 RKFRVKILGIDI-PVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CCEEEEEEeecc-cCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 457778777753 3322 333345555533 222 22455555567799999998887653 458999999853
Q ss_pred CCC----------------CCCccEEEEEeCccch
Q 044346 83 SFT----------------KDDRMKDAKIDIREYM 101 (159)
Q Consensus 83 ~~~----------------~d~~lG~~~i~l~~l~ 101 (159)
... .+..||-+.+.|-+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~ 123 (178)
T cd08399 89 APALSSKKSAESPSSESKGKHQLLYYVNLLLIDHR 123 (178)
T ss_pred cCcccccccccccccccccccceEEEEEEEEEcCC
Confidence 211 1346777888777643
No 144
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=94.56 E-value=0.82 Score=32.29 Aligned_cols=55 Identities=9% Similarity=0.146 Sum_probs=40.4
Q ss_pred EEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEccCCC-C-CCccEEEEEeCcc
Q 044346 45 NIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHDSFT-K-DDRMKDAKIDIRE 99 (159)
Q Consensus 45 ~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~-d~~lG~~~i~l~~ 99 (159)
.++|.+...+.+|.|+|++.+.+... ...|.|++++..... + ...+|.+-++|-+
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 56788888899999999999998764 457888777643221 1 2578988888743
No 145
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=94.11 E-value=0.75 Score=28.85 Aligned_cols=69 Identities=13% Similarity=0.194 Sum_probs=44.7
Q ss_pred EEEEEEEeeCCCCCC-CCCCCcEEEEEEC--Ce----EEEeecccCCCCCccccEEEEEeeCC----CCcEEEEEEEccC
Q 044346 15 LRLRIKQGVNLAIHD-HSGSDPCVFVMMA--KE----NIKIRFIGNNVNPEWNEVFPFSTTYP----NVPIMLSVCDHDS 83 (159)
Q Consensus 15 L~v~v~~a~~L~~~~-~~~~dpy~~v~~~--~~----~~~t~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~~ 83 (159)
+.+.+....+..... ....+.|+.+.+- .+ ...|+.+.-...+.|||.+.|.+.-. +..|.|.+|+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 556666666666554 3334778887553 22 33455555456689999998886542 4589999998543
No 146
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=93.64 E-value=0.83 Score=29.17 Aligned_cols=94 Identities=11% Similarity=0.128 Sum_probs=46.2
Q ss_pred EEEEEEC-CeEEEeecccCCCCCccccEEEEEeeCC--------CCcEEEEEEEccCCCCCCccEEEEEeCccchhhccc
Q 044346 36 CVFVMMA-KENIKIRFIGNNVNPEWNEVFPFSTTYP--------NVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKI 106 (159)
Q Consensus 36 y~~v~~~-~~~~~t~~~~~~~~P~w~e~~~~~~~~~--------~~~l~~~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~ 106 (159)
||.+.+- -+.+.|.++. +.+|.++.+-.+.+... ...+.++++..-.. ..+.+|.+++++.++......
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~-d~~tla~~~i~l~~ll~~~~~ 79 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGS-DFETLAAGQISLRPLLESNGE 79 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS--EEEEEEEEE--SHHHH--S-
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccC-CeEEEEEEEeechhhhcCCCc
Confidence 4454444 3556666666 77999998888887753 34889999886633 357999999999998854331
Q ss_pred CCCCCceeeeEE-eecCCCcccEEEEEEEEE
Q 044346 107 NLEPRNAVKDLD-LKLTNIECGKLQVQLRYC 136 (159)
Q Consensus 107 ~~~~~~~~~~~~-~~l~~~~~G~l~l~l~~~ 136 (159)
.. ..... ....++.-|.|...++..
T Consensus 80 ~i-----~~~~~l~g~~~~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 80 RI-----HGSATLVGVSGEDFGTLEYWIRLR 105 (107)
T ss_dssp -E-----EEEEEE-BSSS-TSEEEEEEEEEE
T ss_pred eE-----EEEEEEeccCCCeEEEEEEEEEec
Confidence 11 10111 123445778888877764
No 147
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=93.42 E-value=0.53 Score=31.48 Aligned_cols=55 Identities=15% Similarity=0.323 Sum_probs=40.0
Q ss_pred EeecccCC-CCCccccEEEEEeeC----CCCcEEEEEEEccCCCCC----CccEEEEEeCccch
Q 044346 47 KIRFIGNN-VNPEWNEVFPFSTTY----PNVPIMLSVCDHDSFTKD----DRMKDAKIDIREYM 101 (159)
Q Consensus 47 ~t~~~~~~-~~P~w~e~~~~~~~~----~~~~l~~~v~d~~~~~~d----~~lG~~~i~l~~l~ 101 (159)
.|.....+ ..+.|+|.+.|.+.- .+..|.|+||........ ..||.+.++|=+..
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~ 86 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYR 86 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TT
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCC
Confidence 55555544 799999999998654 256899999997766554 68999999988753
No 148
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=93.31 E-value=2.1 Score=30.43 Aligned_cols=55 Identities=11% Similarity=0.171 Sum_probs=40.3
Q ss_pred eEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEccCC----CCCCccEEEEEeCc
Q 044346 44 ENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHDSF----TKDDRMKDAKIDIR 98 (159)
Q Consensus 44 ~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~----~~d~~lG~~~i~l~ 98 (159)
..++|.+.....+|.|+|++.+.+... ...|.|++++.... .....+|.+-++|-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 356777777888999999999998763 45888888764321 12247898888874
No 149
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=92.76 E-value=0.49 Score=33.10 Aligned_cols=55 Identities=11% Similarity=0.128 Sum_probs=33.6
Q ss_pred EEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEccCCC-C--CCccEEEEEeCcc
Q 044346 45 NIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHDSFT-K--DDRMKDAKIDIRE 99 (159)
Q Consensus 45 ~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~--d~~lG~~~i~l~~ 99 (159)
.+.|.+..++.+|.|+|++.+.+... +..|-|++++-..-. + +..+|.+.++|-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 45666777888999999999998764 458889998854322 1 2699999999887
No 150
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=91.96 E-value=1.6 Score=30.12 Aligned_cols=69 Identities=12% Similarity=0.137 Sum_probs=50.5
Q ss_pred CCCcEEEEEECCe-EEEeecccC--CCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCccEEEEEeCccch
Q 044346 32 GSDPCVFVMMAKE-NIKIRFIGN--NVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYM 101 (159)
Q Consensus 32 ~~dpy~~v~~~~~-~~~t~~~~~--~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~lG~~~i~l~~l~ 101 (159)
...-|+++.++.+ ..+|....- ...-.|++.|.+.+..--..|.++||.... ..+..|+.+.+++-...
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGST 107 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCc
Confidence 4456889988854 335544433 334567799999988767899999999887 57789999999866543
No 151
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=88.68 E-value=2.4 Score=29.52 Aligned_cols=52 Identities=10% Similarity=0.141 Sum_probs=37.7
Q ss_pred eecccCCCCCccccEEEEEeeCC---CCcEEEEEEEccCC-----CCCCccEEEEEeCcc
Q 044346 48 IRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHDSF-----TKDDRMKDAKIDIRE 99 (159)
Q Consensus 48 t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~-----~~d~~lG~~~i~l~~ 99 (159)
++++....+|.|++++.+.+... ...|-|++++-..- .....+|.+.++|-+
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 33444448999999999988653 45888999885422 335689999999876
No 152
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=88.03 E-value=0.24 Score=41.26 Aligned_cols=95 Identities=14% Similarity=0.021 Sum_probs=57.8
Q ss_pred CCCCcEEEEEEC-CeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCccEEEEEeCccchhhcccCCC
Q 044346 31 SGSDPCVFVMMA-KENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLE 109 (159)
Q Consensus 31 ~~~dpy~~v~~~-~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~ 109 (159)
...+||+.+.+. .+...+.+...+..|.|+++|...+. .+..+.+.++.......+.+...+.+..+++.. .
T Consensus 26 ~al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~-~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~---~--- 98 (694)
T KOG0694|consen 26 QALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVV-AGGAKNIIVLLKSPDPKALSEAQLSLQEESQKL---L--- 98 (694)
T ss_pred hhhhhhheeccceeecccccCCCCCCCchhhhheeeeee-cCCceEEEEEecCCcchhhHHHhHHHHHHHHHH---H---
Confidence 346788888776 33334455667999999999999966 577888889887655444444444444443332 0
Q ss_pred CCceeeeEEeecCCCcccEEEEEEEEE
Q 044346 110 PRNAVKDLDLKLTNIECGKLQVQLRYC 136 (159)
Q Consensus 110 ~~~~~~~~~~~l~~~~~G~l~l~l~~~ 136 (159)
...++.|..+ .+.|.+...+.+.
T Consensus 99 --~~~~~~w~~~--~~~g~~~~~~~~~ 121 (694)
T KOG0694|consen 99 --ALEQRLWVLI--EELGTLLKPAALT 121 (694)
T ss_pred --hhhhhhcccc--ccccceeeeeccc
Confidence 1112445443 4456666666553
No 153
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=86.54 E-value=3.6 Score=28.86 Aligned_cols=56 Identities=5% Similarity=0.080 Sum_probs=40.6
Q ss_pred eEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEccCC------CCCCccEEEEEeCcc
Q 044346 44 ENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHDSF------TKDDRMKDAKIDIRE 99 (159)
Q Consensus 44 ~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~------~~d~~lG~~~i~l~~ 99 (159)
....|.+.-++.+|.|+|++.+.+... ...|-|++++-+.- .....+|.+-++|-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 355777777889999999999887764 45888888873321 123469999888765
No 154
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=85.76 E-value=13 Score=28.96 Aligned_cols=94 Identities=13% Similarity=0.067 Sum_probs=61.2
Q ss_pred CCCcEEEEEECCeEEEeecccCCCCCccc--cEEEEEeeCCCCcEEEEEEEccCCCCCCccEEEEEeCccchhhcccCCC
Q 044346 32 GSDPCVFVMMAKENIKIRFIGNNVNPEWN--EVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLE 109 (159)
Q Consensus 32 ~~dpy~~v~~~~~~~~t~~~~~~~~P~w~--e~~~~~~~~~~~~l~~~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~ 109 (159)
....|+.+..+....+|..+.-+..-+-+ +.....+..-+..|++.+|-..-. +..-+|.+.+.+.. .+-
T Consensus 73 ~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLv-kk~hIgdI~InIn~-------dII 144 (508)
T PTZ00447 73 YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLT-KKVHIGQIKIDINA-------SVI 144 (508)
T ss_pred ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEecccc-ceeEEEEEEecccH-------HHH
Confidence 44568888888888888766544443333 333444554577999999987765 44788998888775 222
Q ss_pred CCceeeeEEeecCC--CcccEEEEEE
Q 044346 110 PRNAVKDLDLKLTN--IECGKLQVQL 133 (159)
Q Consensus 110 ~~~~~~~~~~~l~~--~~~G~l~l~l 133 (159)
++.++++.|+.+.. ...++|.+++
T Consensus 145 dk~FPKnkWy~c~kDGq~~cRIqLSF 170 (508)
T PTZ00447 145 SKSFPKNEWFVCFKDGQEICKVQMSF 170 (508)
T ss_pred hccCCccceEEEecCCceeeeEEEEe
Confidence 34556688887732 4456666666
No 155
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=85.37 E-value=5 Score=28.29 Aligned_cols=56 Identities=9% Similarity=0.111 Sum_probs=41.0
Q ss_pred eEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEccCC---------CCCCccEEEEEeCcc
Q 044346 44 ENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHDSF---------TKDDRMKDAKIDIRE 99 (159)
Q Consensus 44 ~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~---------~~d~~lG~~~i~l~~ 99 (159)
....|.+..++.+|.|.|++-+.+... ...|-|++++-+.. .....+|.+-++|-.
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 355777778889999999998887753 45888888875411 123468999998865
No 156
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=66.75 E-value=39 Score=23.22 Aligned_cols=75 Identities=12% Similarity=0.113 Sum_probs=47.9
Q ss_pred EEEEeeCCCCCCCCCCCcEEEEEEC----------Ce-EEEeecccC-----CCCCccccEEEEEeeCCC----CcEEEE
Q 044346 18 RIKQGVNLAIHDHSGSDPCVFVMMA----------KE-NIKIRFIGN-----NVNPEWNEVFPFSTTYPN----VPIMLS 77 (159)
Q Consensus 18 ~v~~a~~L~~~~~~~~dpy~~v~~~----------~~-~~~t~~~~~-----~~~P~w~e~~~~~~~~~~----~~l~~~ 77 (159)
.|..|.+.. ..+.||+..+. .. ...|..... ...-.|+.-|++.....+ ..|.|+
T Consensus 7 ~I~~a~~f~-----~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l~ 81 (168)
T PF07162_consen 7 EIESAEGFE-----EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVLQ 81 (168)
T ss_pred EEEEEECCC-----CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEEE
Confidence 455666442 34678887664 22 344444432 234578876666654332 489999
Q ss_pred EEEccCCCCCCccEEEEEeC
Q 044346 78 VCDHDSFTKDDRMKDAKIDI 97 (159)
Q Consensus 78 v~d~~~~~~d~~lG~~~i~l 97 (159)
||..|..+++...|...+.|
T Consensus 82 V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 82 VYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred EEEEcccCCeEEeEEeEEEe
Confidence 99999999999998766654
No 157
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=64.77 E-value=11 Score=32.79 Aligned_cols=71 Identities=15% Similarity=0.166 Sum_probs=55.8
Q ss_pred CCcEEEEEECCeEE-EeecccCC-CCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCccEEEEEeCccchhh
Q 044346 33 SDPCVFVMMAKENI-KIRFIGNN-VNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKD 103 (159)
Q Consensus 33 ~dpy~~v~~~~~~~-~t~~~~~~-~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~lG~~~i~l~~l~~~ 103 (159)
.++|+.+.+..... +|....+. .+|.|.+.|..........+.+.+-+.+.++....+|.+..+...+..+
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~ 210 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSG 210 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhcc
Confidence 47888888774433 55555554 6799999998888877888999998888887568999999999888875
No 158
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=63.58 E-value=4.5 Score=35.20 Aligned_cols=88 Identities=11% Similarity=0.139 Sum_probs=56.5
Q ss_pred cCcccceEEEEEEEEeeCCCCCCCCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEc
Q 044346 7 GRRTSLLSLRLRIKQGVNLAIHDHSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDH 81 (159)
Q Consensus 7 ~~~~~~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~ 81 (159)
......|.+.+.+.+|..+.. ....||+..+. ..+.+|.++..|..|.|++.++..+-. .+...+..++.
T Consensus 753 eSpl~ygflh~~vhsat~lkq----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~-sqS~r~~~~ek 827 (1112)
T KOG4269|consen 753 ESPLLYGFLHVIVHSATGLKQ----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE-SQSSRLEKTEK 827 (1112)
T ss_pred cCcccccceeeeecccccccc----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhh-ccccchhhhcc
Confidence 344456788899999888865 44567776554 456688899999999999999888653 23333444433
Q ss_pred c----------CCCCCCccEEEEEeCcc
Q 044346 82 D----------SFTKDDRMKDAKIDIRE 99 (159)
Q Consensus 82 ~----------~~~~d~~lG~~~i~l~~ 99 (159)
+ +...+...|.....+..
T Consensus 828 ~~~~~k~~~~~~~~~~~~~~~~~~~l~~ 855 (1112)
T KOG4269|consen 828 STPVEKLIDSHSQNSQNEEKRSRMKLDP 855 (1112)
T ss_pred cchHHHhhhccchhhcccccccccccCc
Confidence 2 23344455555555443
No 159
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=63.07 E-value=28 Score=30.64 Aligned_cols=67 Identities=16% Similarity=0.213 Sum_probs=41.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCcEEEEEEC----C----eEEEeecccCCCCCccccEEEEEeeCC----CCcEEEEEEE
Q 044346 13 LSLRLRIKQGVNLAIHDHSGSDPCVFVMMA----K----ENIKIRFIGNNVNPEWNEVFPFSTTYP----NVPIMLSVCD 80 (159)
Q Consensus 13 ~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~----~----~~~~t~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d 80 (159)
.-++|+++.+.++.. ....|-++.|..+ . ...+|+.+....+|.||+.+.|.+.-. ...|.|+||.
T Consensus 343 ~~frI~l~~is~~n~--~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~ 420 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNL--PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYA 420 (1076)
T ss_pred CceEEEEeeccccCC--CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeE
Confidence 457777777665433 1233455555444 2 234555666678899999988886643 3477788775
Q ss_pred c
Q 044346 81 H 81 (159)
Q Consensus 81 ~ 81 (159)
-
T Consensus 421 v 421 (1076)
T KOG0904|consen 421 V 421 (1076)
T ss_pred e
Confidence 3
No 160
>KOG4028 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.20 E-value=7.7 Score=25.72 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=20.4
Q ss_pred CcEEEEEEEccCCCCCCccEEEEEe
Q 044346 72 VPIMLSVCDHDSFTKDDRMKDAKID 96 (159)
Q Consensus 72 ~~l~~~v~d~~~~~~d~~lG~~~i~ 96 (159)
..|.|+||.+|++++.+.-|...+-
T Consensus 74 prl~~qiw~~dnfgr~eiagyg~~~ 98 (175)
T KOG4028|consen 74 PRLHFQIWHHDNFGRCEIAGYGFCH 98 (175)
T ss_pred ceeeeeeeecCcccceeecccceEe
Confidence 4899999999999998887764443
No 161
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=55.24 E-value=62 Score=21.77 Aligned_cols=85 Identities=11% Similarity=0.178 Sum_probs=61.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCC-------------CCcEEEEEEEc
Q 044346 15 LRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYP-------------NVPIMLSVCDH 81 (159)
Q Consensus 15 L~v~v~~a~~L~~~~~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~-------------~~~l~~~v~d~ 81 (159)
|.|+-+.+-|.-. ....|.|+.+++-++..+|+......-=.|+|.|.|.-... .+.+.|+++..
T Consensus 4 L~i~aVTCPGv~L--~~~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl 81 (140)
T PF14909_consen 4 LEIHAVTCPGVWL--CDKGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQL 81 (140)
T ss_pred EEEEEEecCCeEe--CCCCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEE
Confidence 4555555544433 34678899999989999998888776668889999873321 24788999887
Q ss_pred cCCCCCCccEEEEEeCccchh
Q 044346 82 DSFTKDDRMKDAKIDIREYMK 102 (159)
Q Consensus 82 ~~~~~d~~lG~~~i~l~~l~~ 102 (159)
.... .+.++...-.++++..
T Consensus 82 ~~~~-g~iLA~ye~n~rDfLf 101 (140)
T PF14909_consen 82 VPPA-GEILAYYEENTRDFLF 101 (140)
T ss_pred eCCC-CcEEEEEeccccceEc
Confidence 6553 5788888888888765
No 162
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=48.19 E-value=38 Score=20.09 Aligned_cols=29 Identities=24% Similarity=0.465 Sum_probs=22.7
Q ss_pred CCCcEEEEEEEccCCCCCCccEEEEEeCc
Q 044346 70 PNVPIMLSVCDHDSFTKDDRMKDAKIDIR 98 (159)
Q Consensus 70 ~~~~l~~~v~d~~~~~~d~~lG~~~i~l~ 98 (159)
+-...++++|+.+.+..|++++.+..+-.
T Consensus 10 P~~~~~V~L~e~d~~~~Ddll~~~~Td~~ 38 (80)
T PF01060_consen 10 PAKNVKVKLWEDDYFDPDDLLDETKTDSD 38 (80)
T ss_pred cCCCCEEEEEECCCCCCCceeEEEEECCC
Confidence 34567799999998778999998777533
No 163
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.99 E-value=22 Score=30.18 Aligned_cols=43 Identities=16% Similarity=0.346 Sum_probs=34.3
Q ss_pred CccccEEEEEeeCC----CCcEEEEEEEccCCCCCCccEEEEEeCcc
Q 044346 57 PEWNEVFPFSTTYP----NVPIMLSVCDHDSFTKDDRMKDAKIDIRE 99 (159)
Q Consensus 57 P~w~e~~~~~~~~~----~~~l~~~v~d~~~~~~d~~lG~~~i~l~~ 99 (159)
-.|||.+.+.+..+ +..+.+++|+......-.|+|..++.+..
T Consensus 77 ~~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~ 123 (843)
T KOG0906|consen 77 INWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFG 123 (843)
T ss_pred cchhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEeec
Confidence 45999999988764 35899999998776677799998887654
No 164
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=39.51 E-value=2.5e+02 Score=24.22 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=55.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCC---CCCCcc
Q 044346 14 SLRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSF---TKDDRM 90 (159)
Q Consensus 14 ~L~v~v~~a~~L~~~~~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~---~~d~~l 90 (159)
.+.|.|.+.++|+... .+.=.||+..+.+.+.+|.....+ .|.|+..=.|..+.+-..+++.+|-.... -.|..+
T Consensus 342 smevvvmevqglksva-pnrivyctmevegeklqtdqaeas-kp~wgtqgdfstthplpvvkvklftestgvlaledkel 419 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSVA-PNRIVYCTMEVEGEKLQTDQAEAS-KPKWGTQGDFSTTHPLPVVKVKLFTESTGVLALEDKEL 419 (1218)
T ss_pred eeeEEEeeeccccccC-CCeeEEEEEEecccccccchhhhc-CCCCCcCCCcccCCCCceeEEEEEeecceeEEeechhh
Confidence 3567777888887654 122369999998877777665544 69999887888777777888888865431 135567
Q ss_pred EEEEE
Q 044346 91 KDAKI 95 (159)
Q Consensus 91 G~~~i 95 (159)
|++-+
T Consensus 420 grvil 424 (1218)
T KOG3543|consen 420 GRVIL 424 (1218)
T ss_pred CeEEE
Confidence 76554
No 165
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=25.30 E-value=2e+02 Score=18.59 Aligned_cols=86 Identities=8% Similarity=0.039 Sum_probs=46.2
Q ss_pred EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEE-EeecccCCCCCccccEEEEEeeC--C-CCcEEEEEEEccC-CCCC
Q 044346 14 SLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENI-KIRFIGNNVNPEWNEVFPFSTTY--P-NVPIMLSVCDHDS-FTKD 87 (159)
Q Consensus 14 ~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~-~t~~~~~~~~P~w~e~~~~~~~~--~-~~~l~~~v~d~~~-~~~d 87 (159)
.|.+.-+.-.++|..+ .+.+.||+.++-+.... .+........-.=...+.+.+.. + .-.+.|.+|+.+. ...+
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~~ 84 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYEDPKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMSK 84 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCCCCEEETTCEEEEEEEEEEEESEEEEEEEECETTECCC
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceeccccccceeEEEEeCCCCeEeCCEEEEEEeCCCccccc
Confidence 3555555566778776 67789999998876655 33322221111111223333321 1 3467788888763 3345
Q ss_pred CccEEEEEeCcc
Q 044346 88 DRMKDAKIDIRE 99 (159)
Q Consensus 88 ~~lG~~~i~l~~ 99 (159)
+.+.++.+.-.=
T Consensus 85 ~~~f~~~FnT~F 96 (134)
T PF10409_consen 85 EKMFRFWFNTGF 96 (134)
T ss_dssp EEEEEEEEEGGG
T ss_pred CeEEEEEEeeee
Confidence 667666665443
No 166
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=23.65 E-value=21 Score=30.24 Aligned_cols=32 Identities=9% Similarity=0.145 Sum_probs=28.4
Q ss_pred CCCCcEEEEEECCeEEEeecccCCCCCccccE
Q 044346 31 SGSDPCVFVMMAKENIKIRFIGNNVNPEWNEV 62 (159)
Q Consensus 31 ~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~ 62 (159)
-..++++.+.++.+.++|.....+.+|+|||.
T Consensus 303 f~~~~~~itsf~~~~frt~~~~~~e~piyNe~ 334 (975)
T KOG2419|consen 303 FKDKWLAITSFGEQTFRTEISDDTEKPIYNED 334 (975)
T ss_pred cCCCchheeecchhhhhhhhhccccccccccc
Confidence 35678889999999999999999999999986
No 167
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.95 E-value=2.6e+02 Score=19.39 Aligned_cols=40 Identities=20% Similarity=0.105 Sum_probs=27.1
Q ss_pred ccccEEEEEeeCCC----CcEEEEEEEccCCCCCCccEEEEEeC
Q 044346 58 EWNEVFPFSTTYPN----VPIMLSVCDHDSFTKDDRMKDAKIDI 97 (159)
Q Consensus 58 ~w~e~~~~~~~~~~----~~l~~~v~d~~~~~~d~~lG~~~i~l 97 (159)
+||--++...+..+ ..+-+.+|-.+-+++|-..|...+.+
T Consensus 65 v~n~Pievt~KstsPygWPqivl~vfg~d~~G~d~v~GYg~~hi 108 (187)
T KOG4027|consen 65 VINLPIEVTLKSTSPYGWPQIVLNVFGKDHSGKDCVTGYGMLHI 108 (187)
T ss_pred EEecceEEEeccCCCCCCceEEEEEecCCcCCcceeeeeeeEec
Confidence 45544444443322 37889999999999999988766654
Done!