Query 044348
Match_columns 157
No_of_seqs 129 out of 496
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 02:26:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044348.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044348hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02309 AUX_IAA: AUX/IAA fami 100.0 4.5E-34 9.8E-39 232.7 0.2 142 1-155 7-212 (215)
2 cd06398 PB1_Joka2 The PB1 doma 75.3 11 0.00024 27.6 5.7 37 87-123 2-41 (91)
3 PF00564 PB1: PB1 domain; Int 66.7 20 0.00043 24.2 5.1 36 87-123 3-38 (84)
4 cd06396 PB1_NBR1 The PB1 domai 65.3 24 0.00051 25.7 5.5 44 88-131 3-46 (81)
5 cd06407 PB1_NLP A PB1 domain i 59.3 38 0.00083 24.2 5.7 35 87-123 2-36 (82)
6 cd06403 PB1_Par6 The PB1 domai 54.2 35 0.00077 25.1 4.8 37 88-124 3-39 (80)
7 smart00666 PB1 PB1 domain. Pho 50.9 71 0.0015 21.4 5.8 34 88-123 4-37 (81)
8 cd06408 PB1_NoxR The PB1 domai 49.1 70 0.0015 23.6 5.7 36 86-123 3-38 (86)
9 cd06404 PB1_aPKC PB1 domain is 47.3 73 0.0016 23.5 5.6 34 88-123 3-36 (83)
10 cd06397 PB1_UP1 Uncharacterize 41.5 79 0.0017 23.4 5.0 34 88-123 3-36 (82)
11 PF07929 PRiA4_ORF3: Plasmid p 38.0 47 0.001 26.1 3.7 38 86-123 5-44 (179)
12 cd06402 PB1_p62 The PB1 domain 32.8 2E+02 0.0043 21.1 6.0 37 86-122 1-42 (87)
13 cd05992 PB1 The PB1 domain is 27.3 1.6E+02 0.0034 19.5 4.4 35 87-123 2-37 (81)
No 1
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []. The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.
Probab=99.98 E-value=4.5e-34 Score=232.66 Aligned_cols=142 Identities=25% Similarity=0.394 Sum_probs=5.4
Q ss_pred CceecCCCCCCCc----ccccccCCCCCCCCCCccccc-------------cCCCCC-------------CCCCCcc-Cc
Q 044348 1 EVRLLSQPCSSSI----DSTAVSNHNERRDLMSTCTDL-------------NLGLSI-------------SLSPEQR-QR 49 (157)
Q Consensus 1 ELrLglpg~~~s~----~s~~~s~~~~kR~~~~~~~Dl-------------~lgl~~-------------s~~ps~~-~~ 49 (157)
||||||||.++.. .+.......+||.|+++..+. ...... ...|..+ ++
T Consensus 7 ELrLGLPG~~~~~~~~~~~~~~~~~~~kR~F~~aid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 86 (215)
T PF02309_consen 7 ELRLGLPGSESPDASSSSSSKKSSSGNKRGFSEAIDSSSSNSQSSSSSSSDSSSSSSSSSTSSSSSDSSSSSPPASKAQV 86 (215)
T ss_dssp -------------------------------------------------------------------------------B
T ss_pred hhcccCCCCCCCCcccccccccccCcccccchhhhhhcccccccccccccccCcccccccccccccccccCCCCcccccc
Confidence 8999999998654 333334456789887632110 000000 0002233 46
Q ss_pred ccCCCcchhHHhhhhhhhhcccccCCCCCccCCCCcceEEEeecCcceeeeeecCCCCChHHHHHHHHHhhcccccc---
Q 044348 50 LDWPPIKSLLRSTLNKLAEKADENDGRHHHSQQYGSLFVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIKTTN--- 126 (157)
Q Consensus 50 VGWPPVrs~Rkn~~~~~~~~~~~~~~~~~~~~~~~s~~VKV~MdG~pigRKvDL~~~~~Y~~L~~~L~~MF~~~~~~--- 126 (157)
||||||++||+|.+.... .....+||||+|||+||||||||++|+||++|+.+|++||.+++..
T Consensus 87 vgwpp~~s~r~n~~~~~~-------------~~~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~~~~ 153 (215)
T PF02309_consen 87 VGWPPVRSFRKNSLSEKQ-------------SSSSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFSCFSIEQCG 153 (215)
T ss_dssp TTBS----S-----------------------------------------------------------------------
T ss_pred cCCCcccccccccccccc-------------cccCCceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcCCCCccccc
Confidence 799999999998887221 1234789999999999999999999999999999999999544322
Q ss_pred ---------------ccc------cc---------cCCCceeeEEeEEeechhhhcccc
Q 044348 127 ---------------ILC------KS---------YYSQHFCALTFIFICVPAKVLNFT 155 (157)
Q Consensus 127 ---------------~~~------~e---------~~~~~e~v~tYe~i~~~~~~~~~~ 155 (157)
..| .| .|.+|+-++...+||+.+|+++|+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~l~Y~D~egd~mlvGD~PW~~F~~~vkRl~I~~~~e~~~~~ 212 (215)
T PF02309_consen 154 SHGLNESGLLDLLNGSEYVLVYEDKEGDWMLVGDVPWEEFVKSVKRLRIMKSSEAKGLA 212 (215)
T ss_dssp -----------------------------------------------------------
T ss_pred cccccchhhccccCCcceeEEEECCCCCEEEecCCCHHHHHHHhhccEEecHHHhcccC
Confidence 011 11 388888888889999999999985
No 2
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=75.31 E-value=11 Score=27.60 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=29.1
Q ss_pred eEEEeecCcceeeeeecC---CCCChHHHHHHHHHhhccc
Q 044348 87 FVKVYMEGIPIGRKLDLF---AHHGYNALVTTLSHMFTIK 123 (157)
Q Consensus 87 ~VKV~MdG~pigRKvDL~---~~~~Y~~L~~~L~~MF~~~ 123 (157)
=|||+-+|.-+==++++. ..-+|++|...+.+.|.+.
T Consensus 2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~ 41 (91)
T cd06398 2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLS 41 (91)
T ss_pred EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCC
Confidence 389999997544455553 4679999999999999875
No 3
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=66.68 E-value=20 Score=24.17 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=29.9
Q ss_pred eEEEeecCcceeeeeecCCCCChHHHHHHHHHhhccc
Q 044348 87 FVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIK 123 (157)
Q Consensus 87 ~VKV~MdG~pigRKvDL~~~~~Y~~L~~~L~~MF~~~ 123 (157)
-||++.+|...- .+.+...-+|.+|...+.+.|...
T Consensus 3 ~vK~~~~~~~~~-~~~~~~~~s~~~L~~~i~~~~~~~ 38 (84)
T PF00564_consen 3 RVKVRYGGDIRR-IISLPSDVSFDDLRSKIREKFGLL 38 (84)
T ss_dssp EEEEEETTEEEE-EEEECSTSHHHHHHHHHHHHHTTS
T ss_pred EEEEEECCeeEE-EEEcCCCCCHHHHHHHHHHHhCCC
Confidence 489999996443 578877789999999999999974
No 4
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=65.27 E-value=24 Score=25.74 Aligned_cols=44 Identities=11% Similarity=0.101 Sum_probs=35.9
Q ss_pred EEEeecCcceeeeeecCCCCChHHHHHHHHHhhccccccccccc
Q 044348 88 VKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIKTTNILCKS 131 (157)
Q Consensus 88 VKV~MdG~pigRKvDL~~~~~Y~~L~~~L~~MF~~~~~~~~~~e 131 (157)
|||.-.|.-+-=+++-.+.-+|.+|...+.++|++....+.|-+
T Consensus 3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~~f~lKYlD 46 (81)
T cd06396 3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLNDIQIKYVD 46 (81)
T ss_pred EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCCcceeEEEc
Confidence 89999998777788887788999999999999998744444543
No 5
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=59.29 E-value=38 Score=24.19 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=27.8
Q ss_pred eEEEeecCcceeeeeecCCCCChHHHHHHHHHhhccc
Q 044348 87 FVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIK 123 (157)
Q Consensus 87 ~VKV~MdG~pigRKvDL~~~~~Y~~L~~~L~~MF~~~ 123 (157)
=|||...|. .+.+-|..--+|++|...+.++|.+.
T Consensus 2 ~vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~~~ 36 (82)
T cd06407 2 RVKATYGEE--KIRFRLPPSWGFTELKQEIAKRFKLD 36 (82)
T ss_pred EEEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 489999996 34455555669999999999999964
No 6
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=54.20 E-value=35 Score=25.07 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=26.7
Q ss_pred EEEeecCcceeeeeecCCCCChHHHHHHHHHhhcccc
Q 044348 88 VKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIKT 124 (157)
Q Consensus 88 VKV~MdG~pigRKvDL~~~~~Y~~L~~~L~~MF~~~~ 124 (157)
||...|+.=-==.+|.....+|+++..-|+.||.+..
T Consensus 3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l~~ 39 (80)
T cd06403 3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHIPN 39 (80)
T ss_pred eecccCCeEEEEEeccccCcCHHHHHHHHHHHhCCCC
Confidence 5666665422224566667999999999999998764
No 7
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=50.91 E-value=71 Score=21.42 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=28.5
Q ss_pred EEEeecCcceeeeeecCCCCChHHHHHHHHHhhccc
Q 044348 88 VKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIK 123 (157)
Q Consensus 88 VKV~MdG~pigRKvDL~~~~~Y~~L~~~L~~MF~~~ 123 (157)
|||.-.| --|.+-+...-+|++|...+.+.|...
T Consensus 4 vK~~~~~--~~~~~~~~~~~s~~dL~~~i~~~~~~~ 37 (81)
T smart00666 4 VKLRYGG--ETRRLSVPRDISFEDLRSKVAKRFGLD 37 (81)
T ss_pred EEEEECC--EEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 7888855 467777888899999999999999864
No 8
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=49.12 E-value=70 Score=23.56 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=29.6
Q ss_pred ceEEEeecCcceeeeeecCCCCChHHHHHHHHHhhccc
Q 044348 86 LFVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIK 123 (157)
Q Consensus 86 ~~VKV~MdG~pigRKvDL~~~~~Y~~L~~~L~~MF~~~ 123 (157)
+=|||+-.|. .|-|-+..--.|++|...+.++|.+.
T Consensus 3 ikVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~~~ 38 (86)
T cd06408 3 IRVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFGFK 38 (86)
T ss_pred EEEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 4589999887 56666666778999999999999974
No 9
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=47.28 E-value=73 Score=23.50 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=28.9
Q ss_pred EEEeecCcceeeeeecCCCCChHHHHHHHHHhhccc
Q 044348 88 VKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIK 123 (157)
Q Consensus 88 VKV~MdG~pigRKvDL~~~~~Y~~L~~~L~~MF~~~ 123 (157)
||++-.|.-.---+|. .-+|++|.+.+.+||...
T Consensus 3 ~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~~ 36 (83)
T cd06404 3 VKAAYNGDIMITSIDP--SISLEELCNEVRDMCRFH 36 (83)
T ss_pred EEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCCC
Confidence 7999999876666776 678999999999999964
No 10
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=41.52 E-value=79 Score=23.39 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=29.7
Q ss_pred EEEeecCcceeeeeecCCCCChHHHHHHHHHhhccc
Q 044348 88 VKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIK 123 (157)
Q Consensus 88 VKV~MdG~pigRKvDL~~~~~Y~~L~~~L~~MF~~~ 123 (157)
-||+.+| -.|++-...--+|..|...|+.+|.+.
T Consensus 3 fKv~~~g--~~RRf~~~~~pt~~~L~~kl~~Lf~lp 36 (82)
T cd06397 3 FKSSFLG--DTRRIVFPDIPTWEALASKLENLYNLP 36 (82)
T ss_pred EEEEeCC--ceEEEecCCCccHHHHHHHHHHHhCCC
Confidence 3788888 478888888889999999999999976
No 11
>PF07929 PRiA4_ORF3: Plasmid pRiA4b ORF-3-like protein; InterPro: IPR012912 Members of this family are similar to the protein product of ORF-3 (Q44206 from SWISSPROT) found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumourigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process []. Other proteins found in this family are annotated as being putative TnpR resolvases (Q9LCU7 from SWISSPROT, Q50439 from SWISSPROT), but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor (Q7UEI4 from SWISSPROT) and in fact carries a LexA DNA binding domain (IPR006199 from INTERPRO), but no references were found to expand on this. ; PDB: 2I1S_A.
Probab=37.97 E-value=47 Score=26.06 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=30.4
Q ss_pred ceEEEeecCc--ceeeeeecCCCCChHHHHHHHHHhhccc
Q 044348 86 LFVKVYMEGI--PIGRKLDLFAHHGYNALVTTLSHMFTIK 123 (157)
Q Consensus 86 ~~VKV~MdG~--pigRKvDL~~~~~Y~~L~~~L~~MF~~~ 123 (157)
.-+||..+|. +|=|.|.+..-....+|..+|+..|+-.
T Consensus 5 y~lkV~L~~~~p~iwRri~Vp~~~tl~~Lh~~Iq~afgw~ 44 (179)
T PF07929_consen 5 YQLKVSLKGSKPPIWRRIEVPADITLADLHEVIQAAFGWD 44 (179)
T ss_dssp EEEEEEETT-SS-EEEEEEEETT-BHHHHHHHHHHHTT--
T ss_pred EEEEEEEcCCCCCeEEEEEECCCCCHHHHHHHHHHHhCcC
Confidence 4578998885 8999999999999999999999999753
No 12
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=32.76 E-value=2e+02 Score=21.09 Aligned_cols=37 Identities=30% Similarity=0.388 Sum_probs=27.0
Q ss_pred ceEEEeecC---cceeeee--ecCCCCChHHHHHHHHHhhcc
Q 044348 86 LFVKVYMEG---IPIGRKL--DLFAHHGYNALVTTLSHMFTI 122 (157)
Q Consensus 86 ~~VKV~MdG---~pigRKv--DL~~~~~Y~~L~~~L~~MF~~ 122 (157)
+.||.+..| .+=-|.+ |=...-+|++|...+.++|..
T Consensus 1 ~~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~ 42 (87)
T cd06402 1 LTVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPS 42 (87)
T ss_pred CeEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHccc
Confidence 367888877 3444544 446667899999999999963
No 13
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=27.30 E-value=1.6e+02 Score=19.50 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=26.8
Q ss_pred eEEEeecCcceeeeeecC-CCCChHHHHHHHHHhhccc
Q 044348 87 FVKVYMEGIPIGRKLDLF-AHHGYNALVTTLSHMFTIK 123 (157)
Q Consensus 87 ~VKV~MdG~pigRKvDL~-~~~~Y~~L~~~L~~MF~~~ 123 (157)
-|||+-.|. -|.+=+. ..-+|.+|...|.+.|...
T Consensus 2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~~ 37 (81)
T cd05992 2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFGLD 37 (81)
T ss_pred cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhCCC
Confidence 378888864 3344444 7889999999999999975
Done!