Query 044348
Match_columns 157
No_of_seqs 129 out of 496
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 03:35:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044348.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044348hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vd2_A Protein kinase C, IOTA 71.2 14 0.00048 26.1 6.5 38 84-123 5-42 (89)
2 4avp_A ETS translocation varia 62.4 4 0.00014 30.1 2.2 46 104-156 58-103 (106)
3 2i1s_A Hypothetical protein; m 45.2 21 0.00073 27.4 3.9 39 85-123 8-48 (188)
4 1wmh_B Partitioning defective- 42.4 60 0.0021 22.9 5.6 41 84-124 5-45 (86)
5 2dao_A Transcription factor ET 25.3 46 0.0016 24.9 2.7 44 104-154 56-99 (118)
6 1bc8_C SAP-1, protein (SAP-1 E 20.4 39 0.0013 24.2 1.4 42 104-152 51-92 (93)
7 3brc_A Conserved protein of un 19.5 29 0.00098 27.3 0.5 8 3-10 102-109 (156)
8 2kkc_A Sequestosome-1; P62, PB 17.8 2.7E+02 0.0093 19.8 5.5 38 84-121 4-56 (102)
9 3o1c_A Histidine triad nucleot 14.2 53 0.0018 23.2 0.8 9 46-54 117-125 (126)
10 1xg0_B Phycoerythrin alpha-2 c 13.8 68 0.0023 21.9 1.2 14 84-97 36-49 (67)
No 1
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=71.19 E-value=14 Score=26.10 Aligned_cols=38 Identities=16% Similarity=0.285 Sum_probs=29.8
Q ss_pred CcceEEEeecCcceeeeeecCCCCChHHHHHHHHHhhccc
Q 044348 84 GSLFVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIK 123 (157)
Q Consensus 84 ~s~~VKV~MdG~pigRKvDL~~~~~Y~~L~~~L~~MF~~~ 123 (157)
+.+=||++-.|.-+-=.||. .-+|++|...|.++|...
T Consensus 5 ~~vkvK~~~~gdi~~~~v~~--~i~~~~L~~kv~~~~~~~ 42 (89)
T 1vd2_A 5 SQVRVKAYYRGDIMITHFEP--SISFEGLCNEVRDMCSFD 42 (89)
T ss_dssp SCEEEEEESSSCEEEEEECT--TCCHHHHHHHHHHHTTCC
T ss_pred CeEEEEEEeCCeEEEEECCC--CCCHHHHHHHHHHHhCCC
Confidence 45789999999744444544 569999999999999963
No 2
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=62.41 E-value=4 Score=30.06 Aligned_cols=46 Identities=17% Similarity=0.402 Sum_probs=33.3
Q ss_pred CCCCChHHHHHHHHHhhccccccccccccCCCceeeEEeEEeechhhhccccc
Q 044348 104 FAHHGYNALVTTLSHMFTIKTTNILCKSYYSQHFCALTFIFICVPAKVLNFTF 156 (157)
Q Consensus 104 ~~~~~Y~~L~~~L~~MF~~~~~~~~~~e~~~~~e~v~tYe~i~~~~~~~~~~~ 156 (157)
+-.-.|+.|+.+|..-... ++.. -..|-. ++|.|+|.|+++..|.|
T Consensus 58 kp~M~YeKlSRaLRyYY~k---gii~--Kv~G~r--~vYkF~~~p~~l~~~~~ 103 (106)
T 4avp_A 58 RPAMNYDKLSRSLRYYYEK---GIMQ--KVAGER--YVYKFVCDPEALFSMAF 103 (106)
T ss_dssp CTTCCHHHHHHHHHHHHHH---TSEE--ECTTCS--SEEEECCSHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHhc---CeEE--ecCCCe--EEEEecCCHHHHHhccC
Confidence 4456899999999887772 3321 134443 45999999999988876
No 3
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=45.18 E-value=21 Score=27.41 Aligned_cols=39 Identities=15% Similarity=0.294 Sum_probs=35.3
Q ss_pred cceEEEeecCc--ceeeeeecCCCCChHHHHHHHHHhhccc
Q 044348 85 SLFVKVYMEGI--PIGRKLDLFAHHGYNALVTTLSHMFTIK 123 (157)
Q Consensus 85 s~~VKV~MdG~--pigRKvDL~~~~~Y~~L~~~L~~MF~~~ 123 (157)
..-+||..+|+ +|=|.|.+..--...+|-.+|+..|+-.
T Consensus 8 iy~lrV~L~~~~p~iWRri~Vp~~~TL~~LH~vIq~afgw~ 48 (188)
T 2i1s_A 8 VYHLKLSIKGITPQIWRRIQVPENYTFLDLHKAIQAVMDWE 48 (188)
T ss_dssp EEEEEEEETTCSSCEEEEEEEETTCBHHHHHHHHHHHTTCC
T ss_pred EEEEEEEECCCCCCeEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 45689999997 8999999999999999999999999854
No 4
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=42.43 E-value=60 Score=22.87 Aligned_cols=41 Identities=15% Similarity=0.065 Sum_probs=31.4
Q ss_pred CcceEEEeecCcceeeeeecCCCCChHHHHHHHHHhhcccc
Q 044348 84 GSLFVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIKT 124 (157)
Q Consensus 84 ~s~~VKV~MdG~pigRKvDL~~~~~Y~~L~~~L~~MF~~~~ 124 (157)
+-.=||...|+.--==.+|-....+|++|...|+.+|.+..
T Consensus 5 ~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~ 45 (86)
T 1wmh_B 5 SIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPG 45 (86)
T ss_dssp CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTT
T ss_pred CEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCC
Confidence 34678888888643335666677899999999999999753
No 5
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.34 E-value=46 Score=24.88 Aligned_cols=44 Identities=23% Similarity=0.435 Sum_probs=30.5
Q ss_pred CCCCChHHHHHHHHHhhccccccccccccCCCceeeEEeEEeechhhhccc
Q 044348 104 FAHHGYNALVTTLSHMFTIKTTNILCKSYYSQHFCALTFIFICVPAKVLNF 154 (157)
Q Consensus 104 ~~~~~Y~~L~~~L~~MF~~~~~~~~~~e~~~~~e~v~tYe~i~~~~~~~~~ 154 (157)
+.-=.|+.|+.+|-.-+.. ++.-. ..+- -++|.|.+.|+++...
T Consensus 56 kp~MnYeKLSRaLRyYY~k---~ii~K--v~G~--r~vY~F~~~p~~~~~~ 99 (118)
T 2dao_A 56 RTNMTYEKMSRALRHYYKL---NIIRK--EPGQ--RLLFRFMKTPDEIMSG 99 (118)
T ss_dssp CSSCCHHHHHHHHHHHHHH---TSEEC--CSSS--SSEEEECSCSGGGCCC
T ss_pred CCCcCHHHHHHHHHHHHhc---CCEEe--ccCC--eEEEEecCCHHHHhcc
Confidence 4446899999999988873 33211 2222 4689999999998653
No 6
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=20.38 E-value=39 Score=24.22 Aligned_cols=42 Identities=19% Similarity=0.348 Sum_probs=28.3
Q ss_pred CCCCChHHHHHHHHHhhccccccccccccCCCceeeEEeEEeechhhhc
Q 044348 104 FAHHGYNALVTTLSHMFTIKTTNILCKSYYSQHFCALTFIFICVPAKVL 152 (157)
Q Consensus 104 ~~~~~Y~~L~~~L~~MF~~~~~~~~~~e~~~~~e~v~tYe~i~~~~~~~ 152 (157)
+.-=.|+.|+.+|-.-+.. ++.-. ..|- -++|.|.+.|+.++
T Consensus 51 k~~MnYeklSRaLRyYY~~---~il~K--v~g~--r~vY~F~~~p~~~~ 92 (93)
T 1bc8_C 51 KPNMNYDKLSRALRYYYVK---NIIKK--VNGQ--KFVYKFVSYPEILN 92 (93)
T ss_dssp CTTCCHHHHHHHHHHHHHH---TSEEE--CTTS--TTEEEETTTTGGGC
T ss_pred CCCcCHHHHHHHHHHHHhc---CcEEe--cCCC--eEEEEeCCChHHhc
Confidence 3455899999999988863 33211 2222 46899999997654
No 7
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=19.54 E-value=29 Score=27.28 Aligned_cols=8 Identities=25% Similarity=0.086 Sum_probs=6.9
Q ss_pred eecCCCCC
Q 044348 3 RLLSQPCS 10 (157)
Q Consensus 3 rLglpg~~ 10 (157)
|||.||+.
T Consensus 102 RLGvPGSG 109 (156)
T 3brc_A 102 RLGVPGSG 109 (156)
T ss_dssp ECSSTTSC
T ss_pred cccCCCCc
Confidence 89999984
No 8
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=17.79 E-value=2.7e+02 Score=19.78 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=27.7
Q ss_pred CcceEEEeecCc----ceeeeeecCC-----------CCChHHHHHHHHHhhc
Q 044348 84 GSLFVKVYMEGI----PIGRKLDLFA-----------HHGYNALVTTLSHMFT 121 (157)
Q Consensus 84 ~s~~VKV~MdG~----pigRKvDL~~-----------~~~Y~~L~~~L~~MF~ 121 (157)
.++-||++..|. .=-|.+=|.. ..+|+.|...+.++|.
T Consensus 4 m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp 56 (102)
T 2kkc_A 4 MSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFP 56 (102)
T ss_dssp CEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCT
T ss_pred ceEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHcc
Confidence 367899999762 3456555532 2489999999999996
No 9
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A
Probab=14.16 E-value=53 Score=23.16 Aligned_cols=9 Identities=33% Similarity=1.309 Sum_probs=7.8
Q ss_pred ccCcccCCC
Q 044348 46 QRQRLDWPP 54 (157)
Q Consensus 46 ~~~~VGWPP 54 (157)
++.+.||||
T Consensus 117 pr~~~~~~~ 125 (126)
T 3o1c_A 117 GGRQMNWPP 125 (126)
T ss_dssp ESSCCCSSC
T ss_pred CCcccCCCC
Confidence 678889998
No 10
>1xg0_B Phycoerythrin alpha-2 chain; light-harvesting protein, cryptophyte, photosynthesis; HET: LYZ DBV PEB; 0.97A {Rhodomonas SP} SCOP: d.184.1.1 PDB: 1qgw_B* 1xf6_B*
Probab=13.77 E-value=68 Score=21.92 Aligned_cols=14 Identities=21% Similarity=0.285 Sum_probs=11.5
Q ss_pred CcceEEEeecCcce
Q 044348 84 GSLFVKVYMEGIPI 97 (157)
Q Consensus 84 ~s~~VKV~MdG~pi 97 (157)
--|+|||.|..+++
T Consensus 36 DeM~VKV~~~ki~v 49 (67)
T 1xg0_B 36 DEMMVKAQSVKIEV 49 (67)
T ss_dssp GGEEEEEEEEECCC
T ss_pred chhheeeeeccccc
Confidence 46999999998754
Done!