Query 044348
Match_columns 157
No_of_seqs 129 out of 496
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 03:36:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044348.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044348hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bkfa1 d.15.2.2 (A:1-85) Next 62.4 6.7 0.00048 26.1 5.0 39 86-124 5-43 (85)
2 d1ip9a_ d.15.2.2 (A:) Bud emer 50.0 18 0.0013 23.1 5.4 47 82-130 9-55 (85)
3 d2i1sa1 d.343.1.1 (A:4-188) Hy 34.2 19 0.0014 25.7 3.9 37 87-123 7-45 (185)
4 d1n62a2 d.15.4.2 (A:3-81) Carb 28.0 68 0.005 20.3 5.6 50 87-141 3-52 (79)
5 d1duxc_ a.4.5.21 (C:) Elk-1 {H 26.5 13 0.00092 24.8 1.5 36 107-149 51-86 (86)
6 d1awca_ a.4.5.21 (A:) GA bindi 23.7 22 0.0016 24.6 2.4 43 106-155 49-91 (110)
7 d1ffva2 d.15.4.2 (A:3-81) Carb 23.4 84 0.0061 19.8 5.6 50 87-141 3-52 (79)
8 d1kpfa_ d.13.1.1 (A:) Protein 22.5 12 0.00089 24.5 0.8 9 46-54 102-110 (111)
9 d1rm6c2 d.15.4.2 (C:1-81) 4-hy 16.6 1.2E+02 0.009 19.0 6.0 50 87-141 4-53 (81)
10 d1gvja_ a.4.5.21 (A:) ETS-1 tr 16.5 33 0.0024 24.6 2.1 43 105-154 87-129 (142)
No 1
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.36 E-value=6.7 Score=26.13 Aligned_cols=39 Identities=8% Similarity=0.046 Sum_probs=31.9
Q ss_pred ceEEEeecCcceeeeeecCCCCChHHHHHHHHHhhcccc
Q 044348 86 LFVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIKT 124 (157)
Q Consensus 86 ~~VKV~MdG~pigRKvDL~~~~~Y~~L~~~L~~MF~~~~ 124 (157)
.=|||+..|..+==+|=.....+|.+|...|...|.+.+
T Consensus 5 vtvKvtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~l~~ 43 (85)
T d2bkfa1 5 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNT 43 (85)
T ss_dssp EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCSS
T ss_pred EEEEEEECCceEEEEecCCCCCcHHHHHHHHHHhcCccc
Confidence 469999988765556766778899999999999999754
No 2
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=50.04 E-value=18 Score=23.14 Aligned_cols=47 Identities=13% Similarity=0.137 Sum_probs=34.5
Q ss_pred CCCcceEEEeecCcceeeeeecCCCCChHHHHHHHHHhhcccccccccc
Q 044348 82 QYGSLFVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIKTTNILCK 130 (157)
Q Consensus 82 ~~~s~~VKV~MdG~pigRKvDL~~~~~Y~~L~~~L~~MF~~~~~~~~~~ 130 (157)
..++.-|||+.++.-+-=+| ..--+|.+|...+.+.|...+..+.+.
T Consensus 9 ~~~~ikVKv~~~~D~~~~~l--~~~it~~dL~~kI~~rf~~~~~~lkY~ 55 (85)
T d1ip9a_ 9 GLKTTKIKFYYKDDIFALML--KGDTTYKELRSKIAPRIDTDNFKLQTK 55 (85)
T ss_dssp CCCCEEEEECBTTCCEEEEE--CSCCCHHHHHHHHHHHHTSSCEEEEEC
T ss_pred CCCCEEEEEEECCcEEEEEe--CCCCCHHHHHHHHHHHhCCCceEEEEE
Confidence 45678899999998555555 455789999999999998654333443
No 3
>d2i1sa1 d.343.1.1 (A:4-188) Hypothetical protein MM3350 {Methanosarcina mazei [TaxId: 2209]}
Probab=34.20 E-value=19 Score=25.68 Aligned_cols=37 Identities=16% Similarity=0.318 Sum_probs=32.7
Q ss_pred eEEEeecCc--ceeeeeecCCCCChHHHHHHHHHhhccc
Q 044348 87 FVKVYMEGI--PIGRKLDLFAHHGYNALVTTLSHMFTIK 123 (157)
Q Consensus 87 ~VKV~MdG~--pigRKvDL~~~~~Y~~L~~~L~~MF~~~ 123 (157)
-.||.++|+ +|=|.|.+..-....+|-.+|+..|+-.
T Consensus 7 ~lrV~L~~~~P~IWRri~V~~~~tl~~LH~vIq~afgw~ 45 (185)
T d2i1sa1 7 HLKLSIKGITPQIWRRIQVPENYTFLDLHKAIQAVMDWE 45 (185)
T ss_dssp EEEEEETTCSSCEEEEEEEETTCBHHHHHHHHHHHTTCC
T ss_pred EEEEEECCCCCCceEEEEECCCCcHHHHHHHHHHHhccC
Confidence 478999886 4789999999999999999999999743
No 4
>d1n62a2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}
Probab=27.99 E-value=68 Score=20.27 Aligned_cols=50 Identities=10% Similarity=0.147 Sum_probs=36.0
Q ss_pred eEEEeecCcceeeeeecCCCCChHHHHHHHHHhhccccccccccccCCCceeeEE
Q 044348 87 FVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIKTTNILCKSYYSQHFCALT 141 (157)
Q Consensus 87 ~VKV~MdG~pigRKvDL~~~~~Y~~L~~~L~~MF~~~~~~~~~~e~~~~~e~v~t 141 (157)
.+++..+|.++-- |... -..|+..|.+-++...+...|.++.=|.|-|+.
T Consensus 3 ~i~~~lNG~~~~~--~v~p---~~~Ll~~LR~~~~ltgtK~GC~~G~CGaCTVlv 52 (79)
T d1n62a2 3 HIELTINGHPVEA--LVEP---RTLLIHFIREQQNLTGAHIGCDTSHCGACTVDL 52 (79)
T ss_dssp EEEEEETTEEEEE--EECT---TCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEE
T ss_pred eEEEEECCEEEEE--ecCC---CCcHHHHHhhhcCCcccccCCccccccccEEEe
Confidence 5788899988844 4332 345899998888876666788877777777754
No 5
>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.53 E-value=13 Score=24.75 Aligned_cols=36 Identities=25% Similarity=0.437 Sum_probs=25.2
Q ss_pred CChHHHHHHHHHhhccccccccccccCCCceeeEEeEEeechh
Q 044348 107 HGYNALVTTLSHMFTIKTTNILCKSYYSQHFCALTFIFICVPA 149 (157)
Q Consensus 107 ~~Y~~L~~~L~~MF~~~~~~~~~~e~~~~~e~v~tYe~i~~~~ 149 (157)
=.|+.|+.+|-.-+.. ++... ..+ --++|.|+++||
T Consensus 51 MnYeklSRaLRyyY~~---~il~K--v~g--~rl~Y~F~~~p~ 86 (86)
T d1duxc_ 51 MNYDKLSRALRYYYDK---NIIRK--VSG--QKFVYKFVSYPE 86 (86)
T ss_dssp CCHHHHHHHHHHHHTT---TSEEE--CTT--STTEEEESSCCC
T ss_pred CCHHHHHHHHHHHHhc---ccEee--ccC--cEEEEEecCCCC
Confidence 4799999999988873 34322 222 246899999886
No 6
>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.69 E-value=22 Score=24.61 Aligned_cols=43 Identities=16% Similarity=0.482 Sum_probs=30.2
Q ss_pred CCChHHHHHHHHHhhccccccccccccCCCceeeEEeEEeechhhhcccc
Q 044348 106 HHGYNALVTTLSHMFTIKTTNILCKSYYSQHFCALTFIFICVPAKVLNFT 155 (157)
Q Consensus 106 ~~~Y~~L~~~L~~MF~~~~~~~~~~e~~~~~e~v~tYe~i~~~~~~~~~~ 155 (157)
.-.|+.|+.+|-.-+.. +|.-. ..| --++|.|+|.+..+..++
T Consensus 49 ~M~YeklSRaLRyYY~~---~il~K--v~g--~rl~Y~F~~d~~~~~~~~ 91 (110)
T d1awca_ 49 TMNYEKLSRALRYYYDG---DMICK--VQG--KRFVYKFVCDLKTLIGYS 91 (110)
T ss_dssp TCCHHHHHHHHHGGGGS---SSEEE--CTT--STTEEEECSCHHHHTSSC
T ss_pred cccHHHHHHHHHHHHhc---ccEEe--cCC--cEEEEeccCCHHHHhCCC
Confidence 35799999999988873 34321 222 247899999998887653
No 7
>d1ffva2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Hydrogenophaga pseudoflava [TaxId: 47421]}
Probab=23.42 E-value=84 Score=19.79 Aligned_cols=50 Identities=12% Similarity=0.143 Sum_probs=36.7
Q ss_pred eEEEeecCcceeeeeecCCCCChHHHHHHHHHhhccccccccccccCCCceeeEE
Q 044348 87 FVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIKTTNILCKSYYSQHFCALT 141 (157)
Q Consensus 87 ~VKV~MdG~pigRKvDL~~~~~Y~~L~~~L~~MF~~~~~~~~~~e~~~~~e~v~t 141 (157)
-|.+..+|.++ .+|... -..|+..|.+-|+...+...|.++.=|.|-|+.
T Consensus 3 ~i~~~vNG~~~--~~~v~~---~~~Ll~~LR~~~gl~gtK~GC~~G~CGaCTVlv 52 (79)
T d1ffva2 3 IITVNVNGKAQ--EKAVEP---RTLLIHFLREELNLTGAHIGCETSHCGACTVDI 52 (79)
T ss_dssp EEEEEETTEEE--EEEECT---TCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEE
T ss_pred EEEEEECCEEE--EEeCCC---CCCHHHHHhhhcCCcccccCCccccccccEEec
Confidence 47788999886 556443 346899998888877667788877777777753
No 8
>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.51 E-value=12 Score=24.46 Aligned_cols=9 Identities=33% Similarity=1.243 Sum_probs=7.6
Q ss_pred ccCcccCCC
Q 044348 46 QRQRLDWPP 54 (157)
Q Consensus 46 ~~~~VGWPP 54 (157)
++.+++|||
T Consensus 102 p~~~l~wpp 110 (111)
T d1kpfa_ 102 GGRQMHWPP 110 (111)
T ss_dssp ESSCCCSSC
T ss_pred CCCcCCCCc
Confidence 577899998
No 9
>d1rm6c2 d.15.4.2 (C:1-81) 4-hydroxybenzoyl-CoA reductase gamma subunit HrcC, N-terminal domain {Thauera aromatica [TaxId: 59405]}
Probab=16.61 E-value=1.2e+02 Score=18.97 Aligned_cols=50 Identities=12% Similarity=0.054 Sum_probs=35.9
Q ss_pred eEEEeecCcceeeeeecCCCCChHHHHHHHHHhhccccccccccccCCCceeeEE
Q 044348 87 FVKVYMEGIPIGRKLDLFAHHGYNALVTTLSHMFTIKTTNILCKSYYSQHFCALT 141 (157)
Q Consensus 87 ~VKV~MdG~pigRKvDL~~~~~Y~~L~~~L~~MF~~~~~~~~~~e~~~~~e~v~t 141 (157)
.+++..+|.++- +|.. .-..|+..|.+-++...+...|..+.=|.|-|+.
T Consensus 4 ~i~~~lNG~~~~--~~v~---~~~~Ll~~LR~~lgltgtK~gC~~G~CGACTVlv 53 (81)
T d1rm6c2 4 ILRLTLNGRARE--DLVP---DNMLLLDYLRETVGLTGTKQGCDGGECGACTVLV 53 (81)
T ss_dssp EEEEEETTEEEE--EEEE---TTCBHHHHHHHTTCCTTSCCCSSSSSSCTTEEEE
T ss_pred eEEEEECCEEEE--EecC---CCCCHHHHHHHhhCCcccccCCccccCCccEEeE
Confidence 688999998874 4433 2345888888777776666788877777777753
No 10
>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.51 E-value=33 Score=24.63 Aligned_cols=43 Identities=21% Similarity=0.404 Sum_probs=29.9
Q ss_pred CCCChHHHHHHHHHhhccccccccccccCCCceeeEEeEEeechhhhccc
Q 044348 105 AHHGYNALVTTLSHMFTIKTTNILCKSYYSQHFCALTFIFICVPAKVLNF 154 (157)
Q Consensus 105 ~~~~Y~~L~~~L~~MF~~~~~~~~~~e~~~~~e~v~tYe~i~~~~~~~~~ 154 (157)
..-.|+.|+.+|-.-+.. +|..+ ..+ --++|.|+|.++.+..+
T Consensus 87 ~~MnYeKmSRALRyYY~k---~il~K--v~g--~rl~YkF~~~~~~l~~~ 129 (142)
T d1gvja_ 87 PKMNYEKLSRGLRYYYDK---NIIHK--TAG--KRYVYRFVCDLQSLLGY 129 (142)
T ss_dssp TTCCHHHHHHHHHHHHHT---TSEEE--CTT--SSSEEEECSCHHHHHSC
T ss_pred CCccHHHHhHHHHHHhhc---ceEEe--cCC--cEEEEecCCCHHHHhcc
Confidence 346899999999998873 34322 222 25789999988776554
Done!