BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044349
         (123 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2F07|A Chain A, Crystal Structure Of Yvdt From Bacillus Subtilis
 pdb|2F07|B Chain B, Crystal Structure Of Yvdt From Bacillus Subtilis
          Length = 197

 Score = 33.5 bits (75), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 70  HTMKRVSGQVKGDEDFMYVMLSLLDDNAELLPDRDSDSVI 109
           HT+ ++ G++ GDEDF + +L +L D   L+ +R  D ++
Sbjct: 68  HTLDQIKGRLHGDEDF-WTVLDILIDETFLITERHKDIIV 106


>pdb|3ZS7|A Chain A, Crystal Structure Of Pyridoxal Kinase From Trypanosoma
           Brucei
          Length = 300

 Score = 26.2 bits (56), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 11/101 (10%)

Query: 3   IIAGKRYTSQESSDFQE--QATNIFAFFGKLGASDALPFLRWMDIGGNERLMRKTAKEFD 60
           +I G R + QE  +  E  +A N  + +  +       ++  +DI G  R   K  +E  
Sbjct: 50  VIRGHRMSLQEYDELMEGVRANNFLSNYRYILTG----YINNVDIIGRIRDTLKEVRE-- 103

Query: 61  IVLQEWLDEHTMKRVSGQVKGDEDFMYVMLSLLDDNAELLP 101
             L+E  D+  +  +   V GD+  MY    +LD   EL+P
Sbjct: 104 --LREKEDK-KLTFICDPVMGDDGIMYCKKEVLDAYRELVP 141


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,348,276
Number of Sequences: 62578
Number of extensions: 121736
Number of successful extensions: 266
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 263
Number of HSP's gapped (non-prelim): 8
length of query: 123
length of database: 14,973,337
effective HSP length: 85
effective length of query: 38
effective length of database: 9,654,207
effective search space: 366859866
effective search space used: 366859866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)