BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044351
         (1172 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1EEP|A Chain A, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
           Inosine 5'- Monphosphate Dehydrogenase In Complex With A
           Sulfate Ion
 pdb|1EEP|B Chain B, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
           Inosine 5'- Monphosphate Dehydrogenase In Complex With A
           Sulfate Ion
          Length = 404

 Score = 33.1 bits (74), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 773 EALRRQISADKFSAISKELQVNGHPNFGSPMLFASDGHLEKAPILPNTLQKQ----AKGD 828
           EA R++I   K     K +  NG  N   P +F +  HLEK+    N   K+    A  D
Sbjct: 78  EAQRKEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKD 137

Query: 829 MNHALPQAKSLATDI 843
           +N+ L    +++ DI
Sbjct: 138 LNNKLRVGAAVSIDI 152


>pdb|1IHO|A Chain A, Crystal Apo-Structure Of Pantothenate Synthetase From E.
           Coli
 pdb|1IHO|B Chain B, Crystal Apo-Structure Of Pantothenate Synthetase From E.
           Coli
          Length = 283

 Score = 31.6 bits (70), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 13/56 (23%)

Query: 709 REKLKQYR-ESRVIAIHPKTRELHDGSVLTIDHDKCR------------VQFDRPE 751
           R+++++ R E + +A+ P    LHDG +  +D  K R            +QFDRPE
Sbjct: 11  RQQIRRLRMEGKRVALVPTMGNLHDGHMKLVDEAKARADVVVVSIFVNPMQFDRPE 66


>pdb|3GUZ|A Chain A, Structural And Substrate-Binding Studies Of Pantothenate
           Synthenate (Ps)provide Insights Into Homotropic
           Inhibition By Pantoate In Ps's
 pdb|3GUZ|B Chain B, Structural And Substrate-Binding Studies Of Pantothenate
           Synthenate (Ps)provide Insights Into Homotropic
           Inhibition By Pantoate In Ps's
          Length = 176

 Score = 30.8 bits (68), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 13/56 (23%)

Query: 709 REKLKQYR-ESRVIAIHPKTRELHDGSVLTIDHDKCR------------VQFDRPE 751
           R+++++ R E + +A+ P    LHDG +  +D  K R            +QFDRPE
Sbjct: 11  RQQIRRLRMEGKRVALVPTMGNLHDGHMKLVDEAKARADVVAVSIFVNPMQFDRPE 66


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.127    0.361 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,878,766
Number of Sequences: 62578
Number of extensions: 1231545
Number of successful extensions: 2607
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2606
Number of HSP's gapped (non-prelim): 11
length of query: 1172
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1062
effective length of database: 8,089,757
effective search space: 8591321934
effective search space used: 8591321934
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)